RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1504
         (153 letters)



>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
           meningitidis, (serogroup A) [TaxId: 487]}
          Length = 371

 Score = 28.7 bits (64), Expect = 0.23
 Identities = 16/79 (20%), Positives = 26/79 (32%)

Query: 11  LGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVF 70
           +  F      A+       A  G A  L  F  + + +  +T    I    + +   LV 
Sbjct: 224 IQDFYEKVSPATLKLKGAGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVI 283

Query: 71  RKCLKLDMVSTRETAPGQI 89
               +LD  S    AP  +
Sbjct: 284 VGEGRLDRQSLAGKAPIGV 302


>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 123

 Score = 28.1 bits (61), Expect = 0.28
 Identities = 6/48 (12%), Positives = 13/48 (27%)

Query: 80  STRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKD 127
           S+  + PG    +  +       ++       S  I+       I   
Sbjct: 2   SSGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTA 49


>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 117

 Score = 25.5 bits (54), Expect = 2.3
 Identities = 7/52 (13%), Positives = 17/52 (32%)

Query: 79  VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGN 130
           V+T++T P Q    V  + +   ++              +    + Y+    
Sbjct: 11  VTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62


>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 106

 Score = 24.8 bits (53), Expect = 3.1
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 78  MVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSP 114
           +V T E  PG + +L  +++     + V+    W  P
Sbjct: 3   LVRTHEDVPGPVGHLSFSEILD-TSLKVS----WQEP 34


>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein
           phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 102

 Score = 24.3 bits (52), Expect = 4.6
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 79  VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIY 125
           V T+   PGQ +N  +   S    + ++    W+ P    I  Y + 
Sbjct: 4   VITQTGVPGQPLNFKAEPESE-TSILLS----WTPPRSDTIANYELV 45


>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 25.0 bits (54), Expect = 5.1
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 110 MWSSPIISLIVTYIIYKDIGNAAFFGLAAAF 140
            +S P I    +++ +    N      A   
Sbjct: 364 FFSRPEIRFYTSWMDWSKKLNNYASDDALGS 394


>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
           {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 72  KCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNA 131
             +  D + +++ APG ++ L   +V       ++ H +       L       +     
Sbjct: 57  HLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQL--GLADVLSALRFTGEFPKKL 114

Query: 132 AFFGLAAA 139
              G+   
Sbjct: 115 TLVGVIPE 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,677
Number of extensions: 19966
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.1 bits)