Query psy15044
Match_columns 154
No_of_seqs 193 out of 1259
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:00:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1720|consensus 100.0 1.6E-31 3.5E-36 184.7 12.7 141 11-152 46-200 (225)
2 smart00195 DSPc Dual specifici 100.0 1.1E-29 2.4E-34 170.6 13.8 130 19-153 2-132 (138)
3 PTZ00242 protein tyrosine phos 100.0 1.5E-29 3.2E-34 174.4 13.7 134 16-151 9-149 (166)
4 cd00127 DSPc Dual specificity 100.0 6.7E-29 1.5E-33 166.7 13.3 133 18-153 2-135 (139)
5 PTZ00393 protein tyrosine phos 100.0 2E-28 4.4E-33 174.5 13.8 125 25-151 93-220 (241)
6 PF00782 DSPc: Dual specificit 99.9 4.4E-28 9.4E-33 161.8 7.3 125 26-153 1-127 (133)
7 PRK12361 hypothetical protein; 99.9 4.6E-26 1E-30 183.0 15.4 134 16-152 93-229 (547)
8 KOG1719|consensus 99.9 3.9E-25 8.4E-30 146.3 9.7 129 23-151 29-161 (183)
9 KOG1717|consensus 99.9 1.7E-23 3.6E-28 149.7 11.2 126 19-147 173-299 (343)
10 PF05706 CDKN3: Cyclin-depende 99.9 7.3E-23 1.6E-27 138.5 11.1 129 4-133 15-168 (168)
11 KOG1718|consensus 99.9 1.1E-22 2.4E-27 136.5 11.1 129 14-147 13-142 (198)
12 PF03162 Y_phosphatase2: Tyros 99.9 7.5E-23 1.6E-27 140.6 9.8 121 13-138 2-129 (164)
13 KOG1716|consensus 99.9 6.2E-22 1.3E-26 147.4 14.6 129 16-147 73-203 (285)
14 KOG2836|consensus 99.9 1.9E-20 4.2E-25 121.4 13.0 131 15-147 9-144 (173)
15 TIGR01244 conserved hypothetic 99.8 5.6E-19 1.2E-23 118.1 14.1 114 19-140 3-125 (135)
16 COG2453 CDC14 Predicted protei 99.8 1.1E-19 2.4E-24 127.1 9.9 89 63-151 69-158 (180)
17 PF04273 DUF442: Putative phos 99.7 2.9E-17 6.2E-22 105.6 10.1 96 18-120 2-106 (110)
18 PF13350 Y_phosphatase3: Tyros 99.7 4.3E-17 9.4E-22 112.4 9.6 117 19-136 14-160 (164)
19 PLN02727 NAD kinase 99.7 2.2E-16 4.7E-21 129.8 12.6 104 25-131 262-373 (986)
20 smart00012 PTPc_DSPc Protein t 99.7 9.5E-17 2.1E-21 102.2 8.1 84 68-151 4-97 (105)
21 smart00404 PTPc_motif Protein 99.7 9.5E-17 2.1E-21 102.2 8.1 84 68-151 4-97 (105)
22 cd00047 PTPc Protein tyrosine 99.7 9.3E-16 2E-20 111.1 13.0 136 16-151 29-223 (231)
23 PHA02740 protein tyrosine phos 99.7 2.9E-15 6.3E-20 112.1 14.2 136 16-151 79-278 (298)
24 PRK15375 pathogenicity island 99.7 3E-15 6.4E-20 116.7 13.0 135 18-153 328-522 (535)
25 smart00194 PTPc Protein tyrosi 99.6 2.2E-15 4.8E-20 110.9 8.7 136 16-151 57-250 (258)
26 PHA02738 hypothetical protein; 99.6 9.7E-15 2.1E-19 110.5 12.2 136 16-151 78-284 (320)
27 COG3453 Uncharacterized protei 99.6 9E-14 1.9E-18 88.6 13.5 114 18-139 3-125 (130)
28 PHA02742 protein tyrosine phos 99.6 1.3E-14 2.9E-19 109.0 8.7 135 17-151 82-286 (303)
29 KOG2283|consensus 99.6 3.2E-14 7E-19 110.5 10.6 139 9-151 6-165 (434)
30 KOG1572|consensus 99.6 3.6E-14 7.8E-19 100.6 9.7 122 12-138 54-186 (249)
31 KOG0792|consensus 99.6 3.4E-14 7.4E-19 117.5 10.5 79 73-151 1035-1120(1144)
32 PHA02747 protein tyrosine phos 99.5 3.4E-14 7.3E-19 107.2 9.0 135 17-151 82-286 (312)
33 PHA02746 protein tyrosine phos 99.5 5.1E-14 1.1E-18 106.7 9.0 136 16-151 101-304 (323)
34 KOG0790|consensus 99.4 5.9E-14 1.3E-18 107.2 3.1 84 68-151 416-511 (600)
35 PF00102 Y_phosphatase: Protei 99.4 1.5E-12 3.1E-17 94.1 7.3 136 16-151 30-227 (235)
36 COG5599 PTP2 Protein tyrosine 99.3 9.3E-13 2E-17 94.9 2.8 79 73-151 192-284 (302)
37 PF14566 PTPlike_phytase: Inos 99.3 7.3E-12 1.6E-16 85.0 5.9 59 64-123 90-148 (149)
38 KOG0793|consensus 99.2 8.1E-11 1.8E-15 94.5 8.4 116 35-151 817-985 (1004)
39 KOG0791|consensus 99.2 6.8E-11 1.5E-15 88.8 6.6 83 68-150 254-343 (374)
40 COG2365 Protein tyrosine/serin 99.1 1.2E-10 2.6E-15 85.4 5.7 127 15-144 44-181 (249)
41 KOG0789|consensus 99.1 5.5E-10 1.2E-14 87.3 7.4 82 69-150 267-356 (415)
42 COG5350 Predicted protein tyro 99.0 7.6E-09 1.7E-13 69.0 10.0 110 36-147 23-142 (172)
43 KOG4228|consensus 99.0 2.1E-10 4.5E-15 96.1 2.2 83 68-150 696-786 (1087)
44 KOG2386|consensus 99.0 1.6E-09 3.5E-14 82.9 6.2 117 35-151 51-176 (393)
45 KOG4228|consensus 98.9 5.7E-09 1.2E-13 87.8 7.6 128 23-151 894-1075(1087)
46 PF14671 DSPn: Dual specificit 97.5 0.00029 6.2E-09 47.2 5.7 66 75-140 39-111 (141)
47 PF04179 Init_tRNA_PT: Initiat 97.4 0.0021 4.5E-08 51.1 9.6 82 43-125 316-402 (451)
48 PLN02160 thiosulfate sulfurtra 97.3 0.0015 3.2E-08 43.7 6.6 85 35-128 19-107 (136)
49 cd01518 RHOD_YceA Member of th 96.7 0.018 3.9E-07 36.0 7.7 80 35-128 6-87 (101)
50 KOG4471|consensus 96.6 0.0043 9.4E-08 50.2 5.3 28 94-121 369-396 (717)
51 COG0607 PspE Rhodanese-related 96.0 0.039 8.5E-07 34.7 6.3 80 35-129 9-88 (110)
52 PF00581 Rhodanese: Rhodanese- 95.7 0.049 1.1E-06 34.2 6.0 90 35-128 2-98 (113)
53 PF06602 Myotub-related: Myotu 95.5 0.042 9.2E-07 42.5 6.0 27 97-123 229-255 (353)
54 PRK01415 hypothetical protein; 95.5 0.15 3.2E-06 37.6 8.5 80 35-128 116-197 (247)
55 cd01520 RHOD_YbbB Member of th 95.5 0.15 3.2E-06 33.4 7.8 31 96-128 83-113 (128)
56 cd01523 RHOD_Lact_B Member of 95.3 0.23 5E-06 30.8 7.7 29 97-128 59-87 (100)
57 KOG1089|consensus 95.1 0.065 1.4E-06 43.7 5.8 25 98-122 343-367 (573)
58 cd01448 TST_Repeat_1 Thiosulfa 95.1 0.22 4.9E-06 32.0 7.5 30 97-128 77-106 (122)
59 PRK00142 putative rhodanese-re 95.0 0.21 4.7E-06 38.1 8.1 80 35-128 116-197 (314)
60 TIGR03865 PQQ_CXXCW PQQ-depend 94.8 0.82 1.8E-05 31.4 9.9 29 98-128 115-143 (162)
61 PRK05320 rhodanese superfamily 94.4 0.31 6.7E-06 36.1 7.6 80 35-128 114-201 (257)
62 cd01522 RHOD_1 Member of the R 94.3 0.61 1.3E-05 30.0 8.1 85 36-128 4-90 (117)
63 cd01519 RHOD_HSP67B2 Member of 94.3 0.24 5.1E-06 31.0 6.0 84 36-128 4-92 (106)
64 cd01533 4RHOD_Repeat_2 Member 94.2 0.46 1E-05 30.0 7.3 77 35-128 14-92 (109)
65 KOG1530|consensus 94.2 0.19 4.1E-06 33.2 5.4 77 35-115 27-104 (136)
66 cd01528 RHOD_2 Member of the R 93.1 0.71 1.5E-05 28.6 6.6 28 98-128 57-84 (101)
67 PRK00162 glpE thiosulfate sulf 91.2 2.1 4.5E-05 26.9 7.1 76 35-128 9-84 (108)
68 cd01526 RHOD_ThiF Member of th 90.4 1.4 3.1E-05 28.4 6.0 28 97-127 70-97 (122)
69 cd01534 4RHOD_Repeat_3 Member 90.4 2.5 5.5E-05 25.7 6.9 27 99-128 56-82 (95)
70 PRK05600 thiamine biosynthesis 90.2 1.7 3.7E-05 34.0 7.1 83 35-128 275-358 (370)
71 cd01444 GlpE_ST GlpE sulfurtra 90.0 2.9 6.2E-05 25.3 7.4 30 96-128 53-82 (96)
72 cd01527 RHOD_YgaP Member of th 89.8 1.3 2.8E-05 27.2 5.2 75 35-128 6-80 (99)
73 smart00450 RHOD Rhodanese Homo 89.6 1.5 3.3E-05 26.3 5.4 29 97-128 54-82 (100)
74 COG1054 Predicted sulfurtransf 89.0 4.1 8.9E-05 30.9 8.0 79 35-127 117-197 (308)
75 cd01449 TST_Repeat_2 Thiosulfa 87.9 3.7 8.1E-05 26.0 6.5 28 98-128 77-104 (118)
76 PRK11784 tRNA 2-selenouridine 87.6 3.3 7.3E-05 32.1 7.1 29 98-128 87-115 (345)
77 cd01525 RHOD_Kc Member of the 87.4 2.9 6.3E-05 25.8 5.7 27 99-128 65-91 (105)
78 TIGR02981 phageshock_pspE phag 87.2 2.4 5.1E-05 26.7 5.1 72 40-128 12-84 (101)
79 PRK10287 thiosulfate:cyanide s 86.5 1.9 4.2E-05 27.2 4.5 28 98-128 59-86 (104)
80 cd01530 Cdc25 Cdc25 phosphatas 86.2 5.4 0.00012 25.8 6.6 25 97-123 66-91 (121)
81 PRK07411 hypothetical protein; 85.4 3.7 8.1E-05 32.3 6.4 81 35-128 286-368 (390)
82 cd01521 RHOD_PspE2 Member of t 83.8 8.4 0.00018 24.2 6.9 30 97-128 62-92 (110)
83 PRK01269 tRNA s(4)U8 sulfurtra 82.9 2.7 5.9E-05 34.1 4.8 28 97-127 447-474 (482)
84 TIGR03167 tRNA_sel_U_synt tRNA 82.3 6.1 0.00013 30.2 6.3 26 100-127 75-100 (311)
85 cd01532 4RHOD_Repeat_1 Member 80.7 3.8 8.3E-05 24.9 4.0 29 99-128 50-78 (92)
86 cd01529 4RHOD_Repeats Member o 79.4 3.4 7.3E-05 25.2 3.4 29 97-128 54-82 (96)
87 PRK08762 molybdopterin biosynt 79.1 12 0.00026 29.3 7.1 75 35-127 7-82 (376)
88 PF03861 ANTAR: ANTAR domain; 78.2 4 8.7E-05 22.6 3.2 23 116-138 17-39 (56)
89 cd01524 RHOD_Pyr_redox Member 77.9 12 0.00027 22.3 6.6 74 35-127 3-76 (90)
90 PRK09629 bifunctional thiosulf 77.0 27 0.00059 29.4 8.9 29 97-128 221-249 (610)
91 cd01531 Acr2p Eukaryotic arsen 76.1 17 0.00036 22.9 7.6 18 99-116 62-79 (113)
92 PF02673 BacA: Bacitracin resi 75.9 3.5 7.7E-05 30.6 3.2 27 107-135 159-185 (259)
93 PF03668 ATP_bind_2: P-loop AT 75.8 7.8 0.00017 29.2 5.0 18 101-118 244-261 (284)
94 COG1660 Predicted P-loop-conta 75.3 7 0.00015 29.2 4.5 34 85-118 222-262 (286)
95 PRK11493 sseA 3-mercaptopyruva 73.6 17 0.00037 27.1 6.5 30 97-128 85-114 (281)
96 PF02126 PTE: Phosphotriestera 73.4 15 0.00033 28.0 6.1 37 94-132 150-186 (308)
97 PF10302 DUF2407: DUF2407 ubiq 72.8 1.7 3.8E-05 27.2 0.8 10 100-109 86-95 (97)
98 PRK09629 bifunctional thiosulf 72.5 22 0.00048 29.9 7.3 89 34-127 12-107 (610)
99 PRK12554 undecaprenyl pyrophos 72.5 4.4 9.4E-05 30.5 3.0 26 107-134 165-190 (276)
100 TIGR00753 undec_PP_bacA undeca 71.6 4.8 0.0001 29.9 3.0 26 107-134 159-184 (255)
101 COG0794 GutQ Predicted sugar p 71.6 15 0.00033 26.3 5.4 27 96-125 36-62 (202)
102 smart00400 ZnF_CHCC zinc finge 71.1 6.1 0.00013 21.7 2.7 33 102-136 22-54 (55)
103 PRK00281 undecaprenyl pyrophos 71.0 5 0.00011 30.0 3.0 26 107-134 163-188 (268)
104 PRK07878 molybdopterin biosynt 70.8 19 0.00042 28.3 6.4 78 35-128 291-369 (392)
105 cd01447 Polysulfide_ST Polysul 69.0 8 0.00017 23.6 3.3 29 97-128 59-87 (103)
106 cd01443 Cdc25_Acr2p Cdc25 enzy 69.0 26 0.00056 22.0 7.9 18 99-116 66-83 (113)
107 PRK05416 glmZ(sRNA)-inactivati 68.7 14 0.0003 28.0 5.0 18 101-118 247-264 (288)
108 PRK11493 sseA 3-mercaptopyruva 67.8 42 0.00091 25.0 7.4 29 97-128 229-257 (281)
109 PLN02723 3-mercaptopyruvate su 63.8 64 0.0014 24.7 8.0 28 97-127 267-294 (320)
110 COG3564 Uncharacterized protei 61.2 15 0.00032 23.0 3.2 26 86-111 11-36 (116)
111 PF02302 PTS_IIB: PTS system, 61.0 7.7 0.00017 23.3 2.0 18 101-119 1-18 (90)
112 PRK05772 translation initiatio 60.2 25 0.00054 27.6 5.0 14 97-110 165-178 (363)
113 PF01807 zf-CHC2: CHC2 zinc fi 59.7 13 0.00028 23.1 2.9 35 103-139 54-88 (97)
114 PRK09875 putative hydrolase; P 59.7 75 0.0016 24.1 9.2 22 35-56 37-58 (292)
115 COG3707 AmiR Response regulato 59.2 13 0.00028 26.4 3.1 21 118-138 151-171 (194)
116 cd05567 PTS_IIB_mannitol PTS_I 59.0 12 0.00027 22.5 2.7 20 101-121 2-21 (87)
117 PF11871 DUF3391: Domain of un 58.4 13 0.00028 23.9 2.9 39 18-56 21-59 (128)
118 cd01535 4RHOD_Repeat_4 Member 56.7 57 0.0012 21.8 6.6 28 97-127 47-74 (145)
119 COG1968 BacA Undecaprenyl pyro 56.5 15 0.00032 27.6 3.1 26 107-134 164-189 (270)
120 PF12554 MOZART1: Mitotic-spin 56.4 31 0.00067 18.6 4.6 32 108-140 17-48 (48)
121 PLN02449 ferrochelatase 56.0 35 0.00076 27.9 5.4 64 32-98 338-415 (485)
122 TIGR00853 pts-lac PTS system, 55.9 11 0.00023 23.4 2.0 17 100-117 4-20 (95)
123 PHA03338 US22 family homolog; 55.3 14 0.00031 27.9 2.9 40 104-143 161-201 (344)
124 PRK06036 translation initiatio 53.5 36 0.00079 26.4 5.0 17 97-113 146-162 (339)
125 PF04364 DNA_pol3_chi: DNA pol 52.3 30 0.00066 22.9 3.9 25 85-109 15-39 (137)
126 PRK06646 DNA polymerase III su 52.1 40 0.00087 23.0 4.5 27 83-109 13-39 (154)
127 PRK08334 translation initiatio 51.8 41 0.00088 26.4 5.0 10 101-110 162-171 (356)
128 PF04343 DUF488: Protein of un 51.0 64 0.0014 20.7 6.9 39 36-74 4-52 (122)
129 PRK05728 DNA polymerase III su 50.4 44 0.00096 22.3 4.5 26 84-109 14-39 (142)
130 PRK10886 DnaA initiator-associ 50.3 64 0.0014 22.9 5.5 36 83-121 25-60 (196)
131 TIGR00512 salvage_mtnA S-methy 49.9 49 0.0011 25.6 5.2 13 97-109 141-157 (331)
132 TIGR03642 cas_csx13 CRISPR-ass 49.7 73 0.0016 20.9 5.7 52 72-126 59-116 (124)
133 cd00158 RHOD Rhodanese Homolog 49.6 45 0.00098 19.2 4.1 27 97-126 48-74 (89)
134 PRK13938 phosphoheptose isomer 49.3 74 0.0016 22.5 5.7 38 83-123 29-66 (196)
135 COG0381 WecB UDP-N-acetylgluco 48.9 58 0.0013 25.8 5.4 85 37-125 22-115 (383)
136 PF00762 Ferrochelatase: Ferro 48.5 71 0.0015 24.5 5.9 46 32-77 241-300 (316)
137 cd07212 Pat_PNPLA9 Patatin-lik 48.2 34 0.00074 26.1 4.1 39 99-140 26-66 (312)
138 PF01904 DUF72: Protein of unk 47.4 1.1E+02 0.0023 22.2 10.3 76 34-109 131-216 (230)
139 cd01674 Homoaconitase_Swivel H 46.8 49 0.0011 21.9 4.1 30 22-52 50-79 (129)
140 cd03174 DRE_TIM_metallolyase D 46.7 1.1E+02 0.0024 22.2 6.8 72 36-111 119-202 (265)
141 COG0276 HemH Protoheme ferro-l 46.6 94 0.002 24.0 6.2 61 32-95 243-317 (320)
142 PF12091 DUF3567: Protein of u 46.5 37 0.00079 20.7 3.2 26 78-105 60-85 (85)
143 PF14532 Sigma54_activ_2: Sigm 45.8 71 0.0015 20.8 5.0 31 84-114 6-36 (138)
144 COG2927 HolC DNA polymerase II 45.7 26 0.00056 23.7 2.7 23 86-108 16-38 (144)
145 COG0084 TatD Mg-dependent DNas 45.2 44 0.00095 24.9 4.1 28 86-113 112-139 (256)
146 COG2897 SseA Rhodanese-related 44.4 81 0.0018 23.9 5.5 22 35-56 160-181 (285)
147 PRK10499 PTS system N,N'-diace 43.4 25 0.00054 22.3 2.3 14 100-113 4-17 (106)
148 PRK10302 hypothetical protein; 43.2 1.4E+02 0.0031 22.4 10.3 80 39-121 148-248 (272)
149 PF05925 IpgD: Enterobacterial 42.3 8.3 0.00018 31.6 0.0 20 99-118 453-472 (559)
150 COG0182 Predicted translation 42.1 35 0.00076 26.4 3.2 17 97-113 148-164 (346)
151 PRK15378 inositol phosphate ph 40.9 48 0.001 27.2 3.9 18 102-119 459-476 (564)
152 smart00489 DEXDc3 DEAD-like he 40.4 1E+02 0.0022 23.2 5.5 36 86-121 14-49 (289)
153 smart00488 DEXDc2 DEAD-like he 40.4 1E+02 0.0022 23.2 5.5 36 86-121 14-49 (289)
154 PF01451 LMWPc: Low molecular 40.0 33 0.00071 22.4 2.6 21 102-123 1-21 (138)
155 PF10673 DUF2487: Protein of u 39.9 1.2E+02 0.0025 20.5 6.4 38 38-76 77-114 (142)
156 TIGR00640 acid_CoA_mut_C methy 39.3 58 0.0013 21.5 3.7 18 36-53 96-113 (132)
157 cd07944 DRE_TIM_HOA_like 4-hyd 39.3 1.6E+02 0.0034 21.9 8.7 74 36-111 113-195 (266)
158 TIGR02584 cas_NE0113 CRISPR-as 39.0 1.3E+02 0.0029 21.6 5.6 41 86-126 104-144 (209)
159 KOG1004|consensus 38.6 99 0.0021 22.4 4.8 38 99-138 185-222 (230)
160 PF10727 Rossmann-like: Rossma 38.3 28 0.00061 22.9 2.0 28 85-113 81-110 (127)
161 PRK05720 mtnA methylthioribose 38.3 1E+02 0.0022 24.0 5.4 16 97-112 145-160 (344)
162 PRK11391 etp phosphotyrosine-p 38.3 35 0.00075 22.8 2.5 21 100-121 3-23 (144)
163 PF09623 Cas_NE0113: CRISPR-as 37.5 1.3E+02 0.0029 21.9 5.5 39 88-126 100-138 (224)
164 PF13986 DUF4224: Domain of un 37.5 47 0.001 17.7 2.5 21 34-54 17-37 (47)
165 cd05565 PTS_IIB_lactose PTS_II 37.3 30 0.00066 21.7 2.0 18 101-120 2-19 (99)
166 cd07216 Pat17_PNPLA8_PNPLA9_li 36.5 33 0.00071 26.0 2.4 36 103-140 42-77 (309)
167 TIGR00204 dxs 1-deoxy-D-xylulo 36.4 56 0.0012 27.6 3.9 45 62-113 234-278 (617)
168 PRK12446 undecaprenyldiphospho 36.3 2E+02 0.0044 22.2 9.1 84 38-121 22-112 (352)
169 smart00226 LMWPc Low molecular 36.2 38 0.00082 22.2 2.5 20 102-122 1-20 (140)
170 PRK10126 tyrosine phosphatase; 36.1 33 0.00072 22.9 2.2 21 100-121 3-23 (147)
171 COG0279 GmhA Phosphoheptose is 35.4 92 0.002 21.8 4.2 28 84-114 26-53 (176)
172 cd01579 AcnA_Bact_Swivel Bacte 35.2 1E+02 0.0022 20.1 4.2 37 16-53 47-83 (121)
173 cd02071 MM_CoA_mut_B12_BD meth 35.0 80 0.0017 20.2 3.8 22 35-56 92-113 (122)
174 PRK00414 gmhA phosphoheptose i 35.0 1.3E+02 0.0028 21.1 5.1 31 83-116 28-58 (192)
175 PRK12435 ferrochelatase; Provi 34.8 92 0.002 23.8 4.6 61 32-95 232-306 (311)
176 PRK06371 translation initiatio 34.4 96 0.0021 24.1 4.6 15 96-110 134-148 (329)
177 PF11385 DUF3189: Protein of u 33.9 45 0.00097 22.6 2.5 20 101-121 1-20 (148)
178 PRK09590 celB cellobiose phosp 33.6 44 0.00095 21.1 2.3 11 101-111 3-13 (104)
179 TIGR03217 4OH_2_O_val_ald 4-hy 33.4 2.3E+02 0.0049 21.9 9.5 74 36-111 118-200 (333)
180 cd01445 TST_Repeats Thiosulfat 33.4 1.4E+02 0.0031 19.6 5.3 31 97-128 93-124 (138)
181 PF13580 SIS_2: SIS domain; PD 33.4 1.4E+02 0.003 19.5 5.8 34 82-118 18-51 (138)
182 PRK00665 petG cytochrome b6-f 33.4 51 0.0011 16.6 2.0 15 112-126 18-32 (37)
183 CHL00008 petG cytochrome b6/f 32.8 52 0.0011 16.5 2.0 15 112-126 18-32 (37)
184 PRK13530 arsenate reductase; P 32.6 69 0.0015 21.0 3.2 21 100-121 4-24 (133)
185 PRK10785 maltodextrin glucosid 32.4 85 0.0018 26.4 4.4 29 24-52 171-199 (598)
186 TIGR01133 murG undecaprenyldip 32.1 2.2E+02 0.0047 21.3 9.4 74 37-110 20-100 (348)
187 PF11256 DUF3055: Protein of u 32.0 34 0.00073 20.7 1.5 35 100-135 34-74 (81)
188 TIGR01550 DOC_P1 death-on-curi 31.9 94 0.002 20.1 3.7 50 85-139 51-104 (121)
189 TIGR00274 N-acetylmuramic acid 31.7 2.1E+02 0.0044 21.7 6.0 46 83-131 41-89 (291)
190 PF00733 Asn_synthase: Asparag 31.6 60 0.0013 23.1 3.1 25 89-113 7-31 (255)
191 TIGR02613 mob_myst_B mobile my 31.1 58 0.0013 22.8 2.8 27 102-128 120-147 (186)
192 cd07214 Pat17_isozyme_like Pat 30.8 84 0.0018 24.4 3.9 38 103-141 43-85 (349)
193 PRK08903 DnaA regulatory inact 30.7 1.6E+02 0.0035 20.8 5.2 22 98-119 41-62 (227)
194 COG1228 HutI Imidazolonepropio 30.6 2.4E+02 0.0052 22.5 6.4 44 92-136 299-345 (406)
195 PRK10310 PTS system galactitol 30.0 48 0.001 20.4 2.0 18 101-119 4-21 (94)
196 COG2230 Cfa Cyclopropane fatty 29.8 73 0.0016 24.1 3.3 39 83-121 153-195 (283)
197 KOG1905|consensus 29.7 1.2E+02 0.0026 23.4 4.3 33 81-113 37-69 (353)
198 PF00580 UvrD-helicase: UvrD/R 29.4 59 0.0013 24.0 2.8 32 99-130 13-46 (315)
199 PF10566 Glyco_hydro_97: Glyco 29.2 17 0.00038 27.3 -0.1 35 17-51 1-51 (273)
200 PF01503 PRA-PH: Phosphoribosy 28.5 1.3E+02 0.0028 17.9 3.7 19 121-139 64-82 (83)
201 cd00115 LMWPc Substituted upda 28.4 57 0.0012 21.4 2.3 21 101-122 2-22 (141)
202 PF13579 Glyco_trans_4_4: Glyc 28.2 57 0.0012 20.8 2.3 71 36-108 9-81 (160)
203 PF06415 iPGM_N: BPG-independe 28.2 80 0.0017 23.0 3.1 47 73-121 35-83 (223)
204 COG0394 Wzb Protein-tyrosine-p 28.1 60 0.0013 21.6 2.4 21 100-121 3-23 (139)
205 PRK11449 putative deoxyribonuc 28.1 1.4E+02 0.0029 22.1 4.5 24 88-111 116-139 (258)
206 PRK08195 4-hyroxy-2-oxovalerat 28.0 2.9E+02 0.0062 21.4 9.1 73 36-111 119-201 (337)
207 PRK00726 murG undecaprenyldiph 27.9 2.7E+02 0.0058 21.1 10.0 74 37-110 21-101 (357)
208 KOG3020|consensus 27.8 86 0.0019 23.9 3.3 25 85-109 159-184 (296)
209 KOG4388|consensus 27.8 91 0.002 26.5 3.7 45 65-109 352-405 (880)
210 COG3265 GntK Gluconate kinase 27.3 1E+02 0.0022 21.2 3.3 28 83-110 51-78 (161)
211 PRK00073 pgk phosphoglycerate 27.3 3.2E+02 0.007 21.8 7.7 73 72-144 22-108 (389)
212 KOG1529|consensus 27.3 73 0.0016 24.2 2.8 25 97-121 234-258 (286)
213 TIGR00109 hemH ferrochelatase. 27.3 1.7E+02 0.0037 22.4 5.0 24 32-55 246-269 (322)
214 PF10096 DUF2334: Uncharacteri 27.0 1.3E+02 0.0027 22.1 4.1 55 39-108 23-77 (243)
215 cd01906 proteasome_protease_Hs 26.9 1E+02 0.0022 20.9 3.5 34 105-138 128-161 (182)
216 PF14597 Lactamase_B_5: Metall 26.9 90 0.002 22.2 3.1 38 18-55 26-65 (199)
217 cd01294 DHOase Dihydroorotase 26.9 1.4E+02 0.0031 22.7 4.6 54 88-141 115-184 (335)
218 PF13378 MR_MLE_C: Enolase C-t 26.8 1.6E+02 0.0035 18.2 5.3 35 85-121 32-66 (111)
219 PRK12570 N-acetylmuramic acid- 26.5 1.5E+02 0.0032 22.5 4.5 30 84-116 43-72 (296)
220 cd00133 PTS_IIB PTS_IIB: subun 26.5 74 0.0016 18.0 2.4 20 101-121 1-20 (84)
221 TIGR02094 more_P_ylases alpha- 26.1 86 0.0019 26.5 3.4 35 100-137 161-198 (601)
222 COG3958 Transketolase, C-termi 26.0 1.5E+02 0.0031 22.8 4.2 40 97-138 268-310 (312)
223 COG1513 CynS Cyanate lyase [In 26.0 1.3E+02 0.0029 20.0 3.5 29 106-134 27-55 (151)
224 PF10354 DUF2431: Domain of un 25.9 2.2E+02 0.0049 19.5 6.4 82 30-111 38-130 (166)
225 cd05007 SIS_Etherase N-acetylm 25.8 1.1E+02 0.0025 22.5 3.7 33 83-118 33-65 (257)
226 PLN02225 1-deoxy-D-xylulose-5- 25.8 1.3E+02 0.0027 26.1 4.3 47 61-112 321-367 (701)
227 cd07213 Pat17_PNPLA8_PNPLA9_li 25.3 1.9E+02 0.0042 21.6 4.9 38 103-143 34-71 (288)
228 cd05564 PTS_IIB_chitobiose_lic 25.2 67 0.0015 19.7 2.1 13 101-113 1-13 (96)
229 cd01295 AdeC Adenine deaminase 25.2 3E+02 0.0066 21.8 6.2 46 89-137 124-174 (422)
230 PF14555 UBA_4: UBA-like domai 25.1 1.1E+02 0.0024 15.6 3.0 23 115-138 16-38 (43)
231 PF00931 NB-ARC: NB-ARC domain 25.0 1.2E+02 0.0027 22.1 3.8 36 85-120 5-40 (287)
232 PRK10933 trehalose-6-phosphate 25.0 1.8E+02 0.004 24.2 5.1 37 17-53 12-54 (551)
233 COG1099 Predicted metal-depend 24.9 2.9E+02 0.0063 20.4 8.5 23 34-56 13-35 (254)
234 PF00308 Bac_DnaA: Bacterial d 24.7 1.9E+02 0.0041 20.7 4.6 21 100-120 35-55 (219)
235 PTZ00005 phosphoglycerate kina 24.6 3.8E+02 0.0082 21.7 7.9 73 72-144 28-116 (417)
236 cd01701 PolY_Rev1 DNA polymera 24.2 27 0.00059 27.6 0.2 57 85-142 57-113 (404)
237 PRK08624 hypothetical protein; 24.1 46 0.00099 26.3 1.3 40 103-142 59-102 (373)
238 cd05006 SIS_GmhA Phosphoheptos 24.0 2.4E+02 0.0052 19.1 5.7 34 81-117 15-48 (177)
239 TIGR01460 HAD-SF-IIA Haloacid 23.8 1.8E+02 0.0039 21.0 4.4 42 85-127 16-57 (236)
240 cd00308 enolase_like Enolase-s 23.8 2.4E+02 0.0053 20.1 5.1 26 85-110 182-207 (229)
241 PF12637 TSCPD: TSCPD domain; 23.7 66 0.0014 19.9 1.8 18 124-141 52-69 (95)
242 PLN00072 3-isopropylmalate iso 23.6 1.8E+02 0.0039 21.6 4.3 33 18-52 130-163 (246)
243 TIGR01927 menC_gamma/gm+ o-suc 23.5 3.1E+02 0.0067 20.8 5.8 25 86-110 244-268 (307)
244 cd07211 Pat_PNPLA8 Patatin-lik 23.5 1.4E+02 0.0031 22.4 4.0 35 103-139 41-75 (308)
245 PRK05597 molybdopterin biosynt 23.4 1.2E+02 0.0026 23.6 3.6 29 97-128 312-340 (355)
246 cd00530 PTE Phosphotriesterase 23.2 1.5E+02 0.0033 21.9 4.0 21 35-55 35-55 (293)
247 cd01720 Sm_D2 The eukaryotic S 23.1 1.2E+02 0.0026 18.5 2.8 43 90-134 5-47 (87)
248 PF09345 DUF1987: Domain of un 23.1 1.7E+02 0.0037 18.3 3.6 31 77-107 54-84 (99)
249 PF13344 Hydrolase_6: Haloacid 22.9 2E+02 0.0042 17.8 4.1 43 86-130 17-59 (101)
250 cd01302 Cyclic_amidohydrolases 22.9 1.3E+02 0.0029 23.0 3.7 47 91-141 120-168 (337)
251 COG5495 Uncharacterized conser 22.9 95 0.0021 23.1 2.7 27 89-116 81-107 (289)
252 cd01310 TatD_DNAse TatD like p 22.9 1.1E+02 0.0024 21.7 3.2 18 92-109 114-131 (251)
253 PRK15129 L-Ala-D/L-Glu epimera 22.9 92 0.002 23.8 2.8 24 87-110 256-279 (321)
254 COG0126 Pgk 3-phosphoglycerate 22.8 1.5E+02 0.0032 23.7 3.8 41 71-111 24-64 (395)
255 PF12146 Hydrolase_4: Putative 22.7 1.8E+02 0.0038 17.1 3.9 32 83-114 27-58 (79)
256 cd01991 Asn_Synthase_B_C The C 22.7 1.5E+02 0.0032 21.6 3.8 25 90-114 6-30 (269)
257 TIGR00715 precor6x_red precorr 22.6 1.5E+02 0.0032 22.0 3.7 30 25-54 176-206 (256)
258 TIGR03675 arCOG00543 arCOG0054 22.6 2.2E+02 0.0048 24.2 5.2 36 83-119 386-421 (630)
259 PF02529 PetG: Cytochrome B6-F 22.4 84 0.0018 15.9 1.7 14 113-126 19-32 (37)
260 PHA02540 61 DNA primase; Provi 22.4 2E+02 0.0044 22.4 4.5 38 101-140 53-90 (337)
261 TIGR00236 wecB UDP-N-acetylglu 22.4 3.6E+02 0.0077 20.6 6.3 87 38-127 20-111 (365)
262 cd06543 GH18_PF-ChiA-like PF-C 22.3 3.5E+02 0.0077 20.5 7.6 61 35-96 57-134 (294)
263 PRK10812 putative DNAse; Provi 22.0 1.9E+02 0.0042 21.4 4.3 22 90-111 115-136 (265)
264 COG0369 CysJ Sulfite reductase 22.0 5E+02 0.011 22.1 11.3 58 83-140 518-577 (587)
265 PRK11773 uvrD DNA-dependent he 21.9 1.2E+02 0.0025 26.2 3.5 34 99-132 22-57 (721)
266 cd05563 PTS_IIB_ascorbate PTS_ 21.9 1.1E+02 0.0024 17.9 2.6 19 101-120 1-19 (86)
267 PF08114 PMP1_2: ATPase proteo 21.8 30 0.00065 18.0 -0.0 13 98-110 7-19 (43)
268 TIGR00010 hydrolase, TatD fami 21.6 2.1E+02 0.0044 20.4 4.4 21 89-109 111-131 (252)
269 cd00009 AAA The AAA+ (ATPases 21.5 2.1E+02 0.0046 17.6 5.1 21 99-119 19-39 (151)
270 KOG3354|consensus 21.3 1.4E+02 0.0031 20.8 3.1 37 72-110 59-95 (191)
271 cd03753 proteasome_alpha_type_ 21.3 1.4E+02 0.003 21.2 3.3 31 106-138 161-193 (213)
272 COG0140 HisI Phosphoribosyl-AT 21.3 1.7E+02 0.0036 18.2 3.2 23 119-141 67-89 (92)
273 cd03409 Chelatase_Class_II Cla 21.3 1.3E+02 0.0029 18.0 2.9 22 31-52 44-65 (101)
274 COG3414 SgaB Phosphotransferas 21.2 92 0.002 19.3 2.1 28 100-128 2-32 (93)
275 PRK02947 hypothetical protein; 21.2 2.5E+02 0.0054 20.5 4.7 34 82-118 23-56 (246)
276 TIGR02084 leud 3-isopropylmala 21.1 1.9E+02 0.0042 19.8 3.8 32 20-53 50-82 (156)
277 PRK05667 dnaG DNA primase; Val 21.1 1.3E+02 0.0029 25.2 3.6 38 101-140 55-92 (580)
278 COG1782 Predicted metal-depend 21.1 1.6E+02 0.0034 24.7 3.7 35 82-117 391-425 (637)
279 cd03756 proteasome_alpha_arche 20.9 1.5E+02 0.0033 20.9 3.5 34 105-138 156-189 (211)
280 PF06692 MNSV_P7B: Melon necro 20.9 1.6E+02 0.0034 16.4 2.6 24 83-106 19-42 (61)
281 PF00128 Alpha-amylase: Alpha 20.9 3.4E+02 0.0073 19.7 5.6 70 35-110 7-81 (316)
282 PF09435 DUF2015: Fungal prote 20.8 2.7E+02 0.0058 18.5 4.2 32 107-138 79-110 (128)
283 PRK07414 cob(I)yrinic acid a,c 20.8 1.5E+02 0.0032 20.9 3.2 24 98-121 20-43 (178)
284 PF13292 DXP_synthase_N: 1-deo 20.7 1.1E+02 0.0024 23.0 2.7 40 61-107 230-269 (270)
285 PF02629 CoA_binding: CoA bind 20.6 1.4E+02 0.003 18.1 2.9 20 35-54 76-95 (96)
286 PF01026 TatD_DNase: TatD rela 20.6 93 0.002 22.7 2.4 13 99-111 124-136 (255)
287 PRK11608 pspF phage shock prot 20.5 3.5E+02 0.0077 20.7 5.6 37 83-119 13-49 (326)
288 PF04309 G3P_antiterm: Glycero 20.4 3.1E+02 0.0068 19.2 5.1 33 90-123 35-69 (175)
289 COG1440 CelA Phosphotransferas 20.1 1E+02 0.0022 19.5 2.1 17 101-118 3-19 (102)
290 PF03701 UPF0181: Uncharacteri 20.1 1.6E+02 0.0035 16.1 2.5 12 125-136 26-37 (51)
No 1
>KOG1720|consensus
Probab=99.97 E-value=1.6e-31 Score=184.74 Aligned_cols=141 Identities=30% Similarity=0.498 Sum_probs=127.8
Q ss_pred hcCCCCceeEeecCceeeecCCCC--------------HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCC
Q psy15044 11 EKEGPRNFSWIVPDELAAMACPDT--------------RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEE 76 (154)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~~~p~~--------------~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d 76 (154)
+.....+|+||.|+++.....|.. ...+..++..++++++.|....|+...+...|+.++++++.|
T Consensus 46 e~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~D 125 (225)
T KOG1720|consen 46 EAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFAD 125 (225)
T ss_pred eccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCC
Confidence 566789999999998777766632 244677888899999999999877777788899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCcccccc
Q psy15044 77 YHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNKE 152 (154)
Q Consensus 77 ~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k~ 152 (154)
+..|+++.+.+|++.+++..+ +++|.|||.+|.||||+++|||||+.+|+++.||++++|..||++|++++|.+-
T Consensus 126 g~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l 200 (225)
T KOG1720|consen 126 GSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKL 200 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHH
Confidence 999999999999999999988 899999999999999999999999999999999999999999999999999874
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.1e-29 Score=170.56 Aligned_cols=130 Identities=20% Similarity=0.315 Sum_probs=113.1
Q ss_pred eEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCC-CCHHHHHHHHHHHHHHHh
Q psy15044 19 SWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHA-PTMRQVIKFIEFCVNCRQ 97 (154)
Q Consensus 19 ~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~-p~~~~~~~~~~~i~~~~~ 97 (154)
++|.|+ +|.|+.| ...++++++++||++||||+.+. +. ....++.|+++|+.|... +..+.+..++++++....
T Consensus 2 ~~I~~~-l~~G~~~-~~~~~~~l~~~gi~~Vi~l~~~~-~~--~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~ 76 (138)
T smart00195 2 SEILPH-LYLGSYS-SALNLALLKKLGITHVINVTNEV-PN--LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEK 76 (138)
T ss_pred cEEeCC-eEECChh-HcCCHHHHHHcCCCEEEEccCCC-CC--CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhc
Confidence 567777 8999999 55689999999999999999886 32 235689999999999543 445678999999999998
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccccc
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNKEE 153 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k~~ 153 (154)
++++|+|||.+|.||||+++++|+|...||++++|+++++++||...++..|.+++
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL 132 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQL 132 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHH
Confidence 99999999999999999999999999999999999999999999998887776654
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.97 E-value=1.5e-29 Score=174.42 Aligned_cols=134 Identities=21% Similarity=0.305 Sum_probs=114.3
Q ss_pred CceeEeecCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHH
Q psy15044 16 RNFSWIVPDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFC 92 (154)
Q Consensus 16 ~~~~~i~~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i 92 (154)
..++|+.+. |+.+..|.. ..+++.|++.||++||+++.+.++.......|+.+.++|++|+..|+.+.+..+++++
T Consensus 9 ~~~~~~~~r-~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i 87 (166)
T PTZ00242 9 RQIEYVLFK-FLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLL 87 (166)
T ss_pred cceeeeceE-EEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 457899555 888899955 4677999999999999998776333344556999999999999999988888999998
Q ss_pred HHHHhC----CCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 93 VNCRQK----GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 93 ~~~~~~----~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
+..... |++|+|||.+|+||||+++++|||...++++++|++.+|++||+++ +..|++
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~ 149 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQ 149 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHH
Confidence 887644 8999999999999999999999999888999999999999999998 566754
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=6.7e-29 Score=166.71 Aligned_cols=133 Identities=22% Similarity=0.355 Sum_probs=115.1
Q ss_pred eeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHH
Q psy15044 18 FSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPT-MRQVIKFIEFCVNCR 96 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~-~~~~~~~~~~i~~~~ 96 (154)
+++|.|+ +|.|++| ...+.+.|++.||++||||+.+. +.......++.|.++|+.|...+. ...+..+++++....
T Consensus 2 ~~~i~~~-l~~g~~~-~~~d~~~L~~~gi~~VI~l~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~ 78 (139)
T cd00127 2 LSEITPG-LYLGSYP-AASDKELLKKLGITHVLNVAKEV-PNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAR 78 (139)
T ss_pred cCEEcCC-eEECChh-HhcCHHHHHHcCCCEEEEcccCC-CCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHH
Confidence 4678666 8899999 56689999999999999999988 433445679999999999887554 446888999999988
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccccc
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNKEE 153 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k~~ 153 (154)
+++++|+|||.+|.||||+++++|+|...++++++|++++|++||....+..+.+++
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l 135 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQL 135 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHH
Confidence 888999999999999999999999999999999999999999999988887777654
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=2e-28 Score=174.51 Aligned_cols=125 Identities=26% Similarity=0.358 Sum_probs=110.9
Q ss_pred ceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q psy15044 25 ELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEA 101 (154)
Q Consensus 25 ~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~ 101 (154)
+|+....|.. ...++.|++.||++||+++...++.......|+.++++|++|+..|+.+.+.+++++++.....|++
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~ 172 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRA 172 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCe
Confidence 6788888854 5677999999999999998877554455677999999999999999999999999999988888999
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 102 VGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 102 vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
|+|||.+|+||||+++|+||+. .|+++++|++++|++||+++. ..|.+
T Consensus 173 VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAIn-~~Q~~ 220 (241)
T PTZ00393 173 VAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAIN-KRQLQ 220 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCCC-HHHHH
Confidence 9999999999999999999997 899999999999999999984 56654
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=4.4e-28 Score=161.77 Aligned_cols=125 Identities=30% Similarity=0.492 Sum_probs=107.8
Q ss_pred eeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCC-CcccCCCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhCCCcEE
Q psy15044 26 LAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPD-GIERYEPLNWILIPVEEY-HAPTMRQVIKFIEFCVNCRQKGEAVG 103 (154)
Q Consensus 26 ~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~-~~~~~~~~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~~~~~~~vl 103 (154)
+|.|+.| ... .+.++++||++|||++.+. +. ......++.++++|+.|. ..+....+..++++|+....+|++|+
T Consensus 1 lylG~~~-~a~-~~~l~~~~I~~Vin~~~~~-~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 77 (133)
T PF00782_consen 1 LYLGSYP-AAS-IAFLKNLGITHVINLQEEC-PNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVL 77 (133)
T ss_dssp EEEEEHH-HHC-HHHHHHTTEEEEEECSSSS-STSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CEEeCHH-HHh-HHHHHHCCCCEEEEccCCC-cCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeE
Confidence 5777887 455 8999999999999999987 33 334567899999999994 44445678999999999988999999
Q ss_pred EeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccccc
Q psy15044 104 VHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNKEE 153 (154)
Q Consensus 104 VHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k~~ 153 (154)
|||.+|.||||+++++|||...+|++++|+++++++||.+.++..|.+++
T Consensus 78 VHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L 127 (133)
T PF00782_consen 78 VHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQL 127 (133)
T ss_dssp EEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHH
T ss_pred EEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999998887766553
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.94 E-value=4.6e-26 Score=182.95 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=117.9
Q ss_pred CceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCC--cccCCCCeEEEeecCCCCCCCHHHHHHHHHHHH
Q psy15044 16 RNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDG--IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCV 93 (154)
Q Consensus 16 ~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~--~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~ 93 (154)
+.+++|.|+ +|.|+.| ...+++.|++.||++||||+.+. +.. .....++.|+++|+.|...|+.+.+.+++++|+
T Consensus 93 ~~~~~I~~~-l~lG~~~-~a~d~~~L~~~gI~~Vldlt~E~-~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~ 169 (547)
T PRK12361 93 PAIQKIDEN-LYLGCRL-FPADLEKLKSNKITAILDVTAEF-DGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIH 169 (547)
T ss_pred CcceEEcCc-EEECCCC-CcccHHHHHHcCCCEEEEccccc-ccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHH
Confidence 467889777 8888898 77899999999999999999775 321 122357999999999998888889999999999
Q ss_pred HHHhCCCcEEEeCCCCCChHHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCCCCcccccc
Q psy15044 94 NCRQKGEAVGVHCRSGRGRTGVMAACYLVYF-LGMTPERAITTLRLARPGSLECHFCNKE 152 (154)
Q Consensus 94 ~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~-~g~~~~~a~~~~r~~Rp~~i~~~~q~k~ 152 (154)
+..+++++|+|||.+|.|||++++++|||.. .++++++|++.+|++||.+.++..|.+.
T Consensus 170 ~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~ 229 (547)
T PRK12361 170 RQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRA 229 (547)
T ss_pred HHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 9999999999999999999999999999976 4899999999999999999999988764
No 8
>KOG1719|consensus
Probab=99.92 E-value=3.9e-25 Score=146.29 Aligned_cols=129 Identities=27% Similarity=0.432 Sum_probs=114.3
Q ss_pred cCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCc---CCCcccCCCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhC
Q psy15044 23 PDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECI---PDGIERYEPLNWILIPVEEY-HAPTMRQVIKFIEFCVNCRQK 98 (154)
Q Consensus 23 ~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~---~~~~~~~~~~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~~~~ 98 (154)
.+..+.+..|-...+.+.++++|+..|+++..+.+ +...+...|++++.+|..|. +.|+.+.+.+.++||......
T Consensus 29 ~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asL 108 (183)
T KOG1719|consen 29 DEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASL 108 (183)
T ss_pred cceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcccc
Confidence 56677778887778889999999999999998871 22344567999999999995 688999999999999999888
Q ss_pred CCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
|+.++|||.||.+||+|+++||||.+.+|++++|++++|+.||..+..+.|.+
T Consensus 109 GktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~ 161 (183)
T KOG1719|consen 109 GKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWD 161 (183)
T ss_pred CCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHH
Confidence 99999999999999999999999999999999999999999999988887765
No 9
>KOG1717|consensus
Probab=99.90 E-value=1.7e-23 Score=149.71 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=109.0
Q ss_pred eEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHH-HHHHHHHHHHHHHh
Q psy15044 19 SWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMR-QVIKFIEFCVNCRQ 97 (154)
Q Consensus 19 ~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~-~~~~~~~~i~~~~~ 97 (154)
..|.|. +|.|+.- +..+.+.|++.||++|||+++.. +..+.....+.|..+|+.|+-..... .|.+++.||++++.
T Consensus 173 V~ilp~-LYLg~a~-ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArs 249 (343)
T KOG1717|consen 173 VEILPN-LYLGCAK-DSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARS 249 (343)
T ss_pred hhhccc-hhccccc-ccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhc
Confidence 466677 6665555 67889999999999999999987 55555666799999999998766654 58999999999999
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECH 147 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~ 147 (154)
++..|||||-+|++||.|++++|||++..++..+|+++++.++.+.-++.
T Consensus 250 k~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNF 299 (343)
T KOG1717|consen 250 KNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNF 299 (343)
T ss_pred cCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCc
Confidence 98999999999999999999999999999999999999999988766553
No 10
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.90 E-value=7.3e-23 Score=138.49 Aligned_cols=129 Identities=28% Similarity=0.467 Sum_probs=80.4
Q ss_pred CCchhhhhcCCCCceeEeec------CceeeecCCCC---------HHHHHHHHHCCCcEEEEcCCCCcCCC--------
Q psy15044 4 RDPPEAKEKEGPRNFSWIVP------DELAAMACPDT---------RDHLKTLSYRGVCHLVSLSEECIPDG-------- 60 (154)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~------~~~~~~~~p~~---------~~~~~~l~~~gi~~Vv~l~~~~~~~~-------- 60 (154)
||++..+...-|..++|+.+ +.+..+..|.. ..|++.|++.|++.||.|.... |..
T Consensus 15 s~~~~~~~~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~ 93 (168)
T PF05706_consen 15 SDEEVVEEEQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDH-ELARLGVPDLG 93 (168)
T ss_dssp --------BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHH
T ss_pred CccCcccccCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHH
Confidence 56677777778999999974 46777788864 6889999999999999999886 211
Q ss_pred -cccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHc-CCCHHHHH
Q psy15044 61 -IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFL-GMTPERAI 133 (154)
Q Consensus 61 -~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~-g~~~~~a~ 133 (154)
.....|+.++|+|++|...|+.+.+.+++..+...+++|.+|+|||.+|.||||+++|++|+... ++++++|+
T Consensus 94 ~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 94 EAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 12346999999999999999877777788888888999999999999999999999999998743 47999886
No 11
>KOG1718|consensus
Probab=99.89 E-value=1.1e-22 Score=136.53 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=107.1
Q ss_pred CCCceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCC-HHHHHHHHHHH
Q psy15044 14 GPRNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPT-MRQVIKFIEFC 92 (154)
Q Consensus 14 ~~~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~-~~~~~~~~~~i 92 (154)
.-..+++|.|+.|+.-|. .+.+...|+++||++|||.+.+. +. ...++++|..+|+.|..... -++|+...+.|
T Consensus 13 ~~~~~SqIt~sLfl~~Gv--aA~~k~~l~~~~It~IiNat~E~-pn--~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGV--AANDKLLLKKRKITCIINATTEV-PN--TSLPDIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred CccchhhcCcceeEeccc--cccCHHHHHhcCceEEEEcccCC-CC--ccCCCceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 346789998885555233 34566789999999999999997 33 34568999999999975443 45688888999
Q ss_pred HHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Q psy15044 93 VNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECH 147 (154)
Q Consensus 93 ~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~ 147 (154)
+.....||.+||||.||++||+++|.+|||++.++++.||+.+++++||-.-++-
T Consensus 88 ~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~ 142 (198)
T KOG1718|consen 88 HSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV 142 (198)
T ss_pred HHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc
Confidence 9988899999999999999999999999999999999999999999998766554
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.89 E-value=7.5e-23 Score=140.62 Aligned_cols=121 Identities=22% Similarity=0.357 Sum_probs=80.8
Q ss_pred CCCCceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCC---cccCCCCeEEEeecCCCCC----CCHHHH
Q psy15044 13 EGPRNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDG---IERYEPLNWILIPVEEYHA----PTMRQV 85 (154)
Q Consensus 13 ~~~~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~---~~~~~~~~~~~~p~~d~~~----p~~~~~ 85 (154)
-||.||..|.++ +|+|++| +..++.+|+++|+++||+|+.+..... .....|++++++++..... .+.+.+
T Consensus 2 vpP~nF~~V~~~-vYRS~~P-~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v 79 (164)
T PF03162_consen 2 VPPLNFGMVEPG-VYRSAQP-TPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQV 79 (164)
T ss_dssp ---TT-EEEETT-EEEESS---HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHH
T ss_pred cCCccccCCCCC-ccCCCCC-ChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHH
Confidence 378999999885 9999999 789999999999999999999861111 2345799999999876543 345567
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
.++++.+.+. .+.||||||..|.+|||++++||. +.+||+...|++.++.
T Consensus 80 ~~aL~~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 80 AEALEIILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHHHHHHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHHHHHHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 7777776553 348999999999999999999999 6699999999998875
No 13
>KOG1716|consensus
Probab=99.89 E-value=6.2e-22 Score=147.44 Aligned_cols=129 Identities=24% Similarity=0.417 Sum_probs=111.2
Q ss_pred CceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCc-ccCCCCeEEEeecCCCCCCCH-HHHHHHHHHHH
Q psy15044 16 RNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGI-ERYEPLNWILIPVEEYHAPTM-RQVIKFIEFCV 93 (154)
Q Consensus 16 ~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~-~~~~~~~~~~~p~~d~~~p~~-~~~~~~~~~i~ 93 (154)
.+++.|.|+ +|.|+.+ ...+...+++.||++|+|+.... +... ....+++|.++|+.|....+. .++.+++.||+
T Consensus 73 ~~~~~i~p~-l~lg~~~-~~~~~~~l~~~~it~vln~~~~~-~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~ 149 (285)
T KOG1716|consen 73 NPIVEILPN-LYLGSQG-VASDPDLLKKLGITHVLNVSSSC-PNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIE 149 (285)
T ss_pred CCceeecCC-ceecCcc-cccchhhHHHcCCCEEEEecccC-CccccccccCceEEeccccCCccccHHHHHHHHHHHHH
Confidence 467888777 6666666 67888999999999999999997 4432 333489999999999876664 46999999999
Q ss_pred HHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Q psy15044 94 NCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECH 147 (154)
Q Consensus 94 ~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~ 147 (154)
.+..+++.|||||.+|++||++++.+|+|+..+|++++|+++++++||...++.
T Consensus 150 ~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~ 203 (285)
T KOG1716|consen 150 KAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNF 203 (285)
T ss_pred HHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCH
Confidence 999999999999999999999999999999999999999999999999885553
No 14
>KOG2836|consensus
Probab=99.86 E-value=1.9e-20 Score=121.41 Aligned_cols=131 Identities=23% Similarity=0.336 Sum_probs=109.8
Q ss_pred CCceeEeecCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHH
Q psy15044 15 PRNFSWIVPDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEF 91 (154)
Q Consensus 15 ~~~~~~i~~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~ 91 (154)
|..++|- .=+|++...|.. ..-++.|+++|+++||.+|+..|+.......||....+|.+|...|+.+.++.++++
T Consensus 9 PveIsy~-~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l 87 (173)
T KOG2836|consen 9 PVEISYK-NMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSL 87 (173)
T ss_pred Ceeeecc-ceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHH
Confidence 4455554 335777788854 466789999999999999999977777788999999999999988888888888888
Q ss_pred HHHHHh--CCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Q psy15044 92 CVNCRQ--KGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECH 147 (154)
Q Consensus 92 i~~~~~--~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~ 147 (154)
+..... .|.-|.|||.+|.||+++++|+-|+. .|+.+++|++++|++|.+++++.
T Consensus 88 ~~~~f~e~p~~cvavhcvaglgrapvlvalalie-~gmkyedave~ir~krrga~n~k 144 (173)
T KOG2836|consen 88 VKTKFREEPGCCVAVHCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKRRGAINSK 144 (173)
T ss_pred HHHHHhhCCCCeEEEEeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHhhccccHH
Confidence 765543 35679999999999999999988876 99999999999999999999763
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.82 E-value=5.6e-19 Score=118.08 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=89.5
Q ss_pred eEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCcc---------cCCCCeEEEeecCCCCCCCHHHHHHHH
Q psy15044 19 SWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIE---------RYEPLNWILIPVEEYHAPTMRQVIKFI 89 (154)
Q Consensus 19 ~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~---------~~~~~~~~~~p~~d~~~p~~~~~~~~~ 89 (154)
..|.++ +|++++| +.++++.|+++||++||||+.+.+....+ ...|+.|+++|+.... ++.+.+..|.
T Consensus 3 ~~i~~~-~~~s~ql-t~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~ 79 (135)
T TIGR01244 3 RKLTEH-LYVSPQL-TKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFR 79 (135)
T ss_pred eEcCCC-eeEcCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHH
Confidence 455444 9999999 88999999999999999999876211111 1369999999987654 4666677777
Q ss_pred HHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 90 EFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 90 ~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
+.++. ..+|||+||.+|. |||++++.++.. .|++.+++++..+...
T Consensus 80 ~~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G 125 (135)
T TIGR01244 80 AAIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAG 125 (135)
T ss_pred HHHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcC
Confidence 77763 2389999999999 999888877755 8999999999997654
No 16
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-19 Score=127.06 Aligned_cols=89 Identities=26% Similarity=0.487 Sum_probs=80.2
Q ss_pred cCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHH-cCCCHHHHHHHHHHhCC
Q psy15044 63 RYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYF-LGMTPERAITTLRLARP 141 (154)
Q Consensus 63 ~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~-~g~~~~~a~~~~r~~Rp 141 (154)
...++.+.++|+.|+..|+.+.+.+++++|....++|++|+|||.+|+|||||++++|||.. .++..++++..++..||
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred ccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999999999999999999999999999999999999999998 45688888899999999
Q ss_pred CCCCCccccc
Q psy15044 142 GSLECHFCNK 151 (154)
Q Consensus 142 ~~i~~~~q~k 151 (154)
+.+.+..|.+
T Consensus 149 ~~v~~~~q~~ 158 (180)
T COG2453 149 GAVVTEIQHL 158 (180)
T ss_pred cccccHHHHH
Confidence 8887776654
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.74 E-value=2.9e-17 Score=105.60 Aligned_cols=96 Identities=26% Similarity=0.344 Sum_probs=62.6
Q ss_pred eeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCc---------ccCCCCeEEEeecCCCCCCCHHHHHHH
Q psy15044 18 FSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGI---------ERYEPLNWILIPVEEYHAPTMRQVIKF 88 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~---------~~~~~~~~~~~p~~d~~~p~~~~~~~~ 88 (154)
+..|. +.++.+++| +.++++.|++.|+++|||++++.+++.. ....|+.|+++|+... .++.+.+..|
T Consensus 2 i~~i~-~~~~vs~Q~-~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~~~~~~v~~f 78 (110)
T PF04273_consen 2 IRQIS-DDLSVSGQP-SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-AITEEDVEAF 78 (110)
T ss_dssp -EEEE-TTEEEECS---HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T--HHHHHHH
T ss_pred CEecC-CCeEECCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-CCCHHHHHHH
Confidence 56674 459999999 8999999999999999999998732221 1246999999999754 4677778888
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCChHHHHHHHH
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSGRGRTGVMAACY 120 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~ 120 (154)
.+.+... .+|||+||..|. |++++.++.
T Consensus 79 ~~~l~~~---~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 79 ADALESL---PKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHHHHTT---TTSEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHhC---CCCEEEECCCCh-hHHHHHHHH
Confidence 8777763 379999999995 998887654
No 18
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.72 E-value=4.3e-17 Score=112.43 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=64.5
Q ss_pred eEeecCceeeecCCCC--HHHHHHHHHCCCcEEEEcCCCCc--CCCcccCCCCeEEEeecCCCCCCCHH-----------
Q psy15044 19 SWIVPDELAAMACPDT--RDHLKTLSYRGVCHLVSLSEECI--PDGIERYEPLNWILIPVEEYHAPTMR----------- 83 (154)
Q Consensus 19 ~~i~~~~~~~~~~p~~--~~~~~~l~~~gi~~Vv~l~~~~~--~~~~~~~~~~~~~~~p~~d~~~p~~~----------- 83 (154)
..|.+|.||+++.+.. .++.+.|.++||++||||+.+.+ ..+.....++.++++|+.+.......
T Consensus 14 ~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (164)
T PF13350_consen 14 RRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSAD 93 (164)
T ss_dssp -TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHH
T ss_pred eeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccc
Confidence 3677999999999954 78899999999999999999872 11122345899999999775433100
Q ss_pred ---HH------------HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy15044 84 ---QV------------IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTL 136 (154)
Q Consensus 84 ---~~------------~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~ 136 (154)
.+ ..+.+++.....+.+|+|+||++|++|||.++|+.| ...|++.+++++..
T Consensus 94 ~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~DY 160 (164)
T PF13350_consen 94 APRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIADY 160 (164)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHHHH
Confidence 00 011111222222347999999999999997776666 44999999887643
No 19
>PLN02727 NAD kinase
Probab=99.70 E-value=2.2e-16 Score=129.85 Aligned_cols=104 Identities=24% Similarity=0.295 Sum_probs=86.7
Q ss_pred ceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCccc--------CCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q psy15044 25 ELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIER--------YEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR 96 (154)
Q Consensus 25 ~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~--------~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~ 96 (154)
.+|++++| ++++++.+.++||++||||+.+.++..... ..|++|+++|+.+...|+.+.+.++.+.+.+..
T Consensus 262 ~~~rsgQp-spe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 262 AFWRGGQV-TEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eEEEeCCC-CHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhc
Confidence 58999999 899999999999999999999883222221 259999999998888899999999999995533
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHH
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPER 131 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~ 131 (154)
.+|||+||.+|.+|||+++|+|+.+..+-....
T Consensus 341 --pkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~ 373 (986)
T PLN02727 341 --KKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERL 373 (986)
T ss_pred --CCCEEEECCCCCchHHHHHHHHHHHHcccchhh
Confidence 379999999999999999999998866654333
No 20
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.70 E-value=9.5e-17 Score=102.22 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=69.0
Q ss_pred eEEEeecCCCCCCCH-HHHHHHHHHHHHHHh---CCCcEEEeCCCCCChHHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy15044 68 NWILIPVEEYHAPTM-RQVIKFIEFCVNCRQ---KGEAVGVHCRSGRGRTGVMAACYLVYFL------GMTPERAITTLR 137 (154)
Q Consensus 68 ~~~~~p~~d~~~p~~-~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rsg~~~a~~l~~~~------g~~~~~a~~~~r 137 (154)
.|.+.+|+|...|.. ..+.++++.+..... .++||+|||.+|.||||++++++++... -.+..+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 455668888887765 567777777776653 3679999999999999999999988753 268889999999
Q ss_pred HhCCCCCCCccccc
Q psy15044 138 LARPGSLECHFCNK 151 (154)
Q Consensus 138 ~~Rp~~i~~~~q~k 151 (154)
..|++++++..|+.
T Consensus 84 ~~r~~~~~~~~q~~ 97 (105)
T smart00012 84 KQRPGMVQTFEQYL 97 (105)
T ss_pred hhhhhhCCcHHHHH
Confidence 99999999998874
No 21
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.70 E-value=9.5e-17 Score=102.22 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=69.0
Q ss_pred eEEEeecCCCCCCCH-HHHHHHHHHHHHHHh---CCCcEEEeCCCCCChHHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy15044 68 NWILIPVEEYHAPTM-RQVIKFIEFCVNCRQ---KGEAVGVHCRSGRGRTGVMAACYLVYFL------GMTPERAITTLR 137 (154)
Q Consensus 68 ~~~~~p~~d~~~p~~-~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rsg~~~a~~l~~~~------g~~~~~a~~~~r 137 (154)
.|.+.+|+|...|.. ..+.++++.+..... .++||+|||.+|.||||++++++++... -.+..+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 455668888887765 567777777776653 3679999999999999999999988753 268889999999
Q ss_pred HhCCCCCCCccccc
Q psy15044 138 LARPGSLECHFCNK 151 (154)
Q Consensus 138 ~~Rp~~i~~~~q~k 151 (154)
..|++++++..|+.
T Consensus 84 ~~r~~~~~~~~q~~ 97 (105)
T smart00404 84 KQRPGMVQTFEQYL 97 (105)
T ss_pred hhhhhhCCcHHHHH
Confidence 99999999998874
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.69 E-value=9.3e-16 Score=111.14 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=97.1
Q ss_pred CceeEee----cCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCc------CCCccc-------------------
Q psy15044 16 RNFSWIV----PDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECI------PDGIER------------------- 63 (154)
Q Consensus 16 ~~~~~i~----~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~------~~~~~~------------------- 63 (154)
.|.+||. ..+++.+..|.. .+-++.+.+.+++.||.|+...+ ..+++.
T Consensus 29 inA~~v~~~~~~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~ 108 (231)
T cd00047 29 INASYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVSEEK 108 (231)
T ss_pred EEeeeEecCCCCcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCCCCCCCeEecCEEEEEEEEEE
Confidence 4557774 345677777743 33456678889999999987531 000000
Q ss_pred ------------------CCCCeEEEe-ecCCCCCCCH-HHHHHHHHHHHHHHh--CCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 64 ------------------YEPLNWILI-PVEEYHAPTM-RQVIKFIEFCVNCRQ--KGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 64 ------------------~~~~~~~~~-p~~d~~~p~~-~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
...+.++++ .|+|...|+. ..+.++++.+..... .++||+|||.+|.||||+++|+++
T Consensus 109 ~~~~~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~ 188 (231)
T cd00047 109 LDDYTVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDI 188 (231)
T ss_pred cCCEEEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHH
Confidence 012334444 5778777764 567777777776642 357999999999999999999987
Q ss_pred HHHc-----CCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 122 VYFL-----GMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 122 ~~~~-----g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
+... .+++.+++..+|++|++++++.+|+.
T Consensus 189 ~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~ 223 (231)
T cd00047 189 LLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYI 223 (231)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHH
Confidence 6543 58999999999999999999999985
No 23
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.67 E-value=2.9e-15 Score=112.14 Aligned_cols=136 Identities=12% Similarity=0.055 Sum_probs=92.1
Q ss_pred CceeEee----cCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCc---C-CCcccC--------------------
Q psy15044 16 RNFSWIV----PDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECI---P-DGIERY-------------------- 64 (154)
Q Consensus 16 ~~~~~i~----~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~---~-~~~~~~-------------------- 64 (154)
-|.+||. +.+++....|.. .+-++.+.++++..||.|+...+ . .+++..
T Consensus 79 INAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e~kc~~~YWP~~~~~~~~~g~f~V~~~~~~~~ 158 (298)
T PHA02740 79 LDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHADKKCFNQFWSLKEGCVITSDKFQIETLEIIIK 158 (298)
T ss_pred EEEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEccccccccccccCCCCCCCCeEEECCEEEEEEEEEec
Confidence 3456662 346777777732 23346678889999999987541 0 111100
Q ss_pred -----------------CCCeEE-EeecCCCCCCC-HHHHHHHHHHHHHHH---------hCCCcEEEeCCCCCChHHHH
Q psy15044 65 -----------------EPLNWI-LIPVEEYHAPT-MRQVIKFIEFCVNCR---------QKGEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 65 -----------------~~~~~~-~~p~~d~~~p~-~~~~~~~~~~i~~~~---------~~~~~vlVHC~~G~~Rsg~~ 116 (154)
..+.++ ...|+|++.|. ...+.+++..+.+.. ...+||+|||++|+||||++
T Consensus 159 ~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtF 238 (298)
T PHA02740 159 PHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVF 238 (298)
T ss_pred CCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHH
Confidence 012222 23778888775 445666665554321 12379999999999999999
Q ss_pred HHHHHHHH-----cCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 117 AACYLVYF-----LGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 117 ~a~~l~~~-----~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
||+..+.. ..++..+++..+|++|++++++.+||.
T Consensus 239 caiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~ 278 (298)
T PHA02740 239 CVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYV 278 (298)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHH
Confidence 99876543 256999999999999999999999985
No 24
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.65 E-value=3e-15 Score=116.69 Aligned_cols=135 Identities=21% Similarity=0.184 Sum_probs=96.7
Q ss_pred eeEeecCceeeecCCCC-----HHHHHHHHHCCCcEEEEcCCCC------cCCCccc-----------------------
Q psy15044 18 FSWIVPDELAAMACPDT-----RDHLKTLSYRGVCHLVSLSEEC------IPDGIER----------------------- 63 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~-----~~~~~~l~~~gi~~Vv~l~~~~------~~~~~~~----------------------- 63 (154)
++|...++++.+.+|.. .+.++.+.++++..||-|+... +.+++..
T Consensus 328 I~~~~k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW~~s~tYGdItVts~seesls~g~iI 407 (535)
T PRK15375 328 LTFDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAI 407 (535)
T ss_pred eeecCccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccCCCcceeccEEEEEEEEEeccCCceE
Confidence 34545668999999943 2556778999999999999853 0111000
Q ss_pred ----------C-C-CCeEEEe-ecCCCCCCC-HHHHHHHHHHHHHHHhC----------CCcEEEeCCCCCChHHHHHHH
Q psy15044 64 ----------Y-E-PLNWILI-PVEEYHAPT-MRQVIKFIEFCVNCRQK----------GEAVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 64 ----------~-~-~~~~~~~-p~~d~~~p~-~~~~~~~~~~i~~~~~~----------~~~vlVHC~~G~~Rsg~~~a~ 119 (154)
. . .+.++|+ .|+|++.|+ ...+..+++.+...... ++| +|||++|+||||+++|+
T Consensus 408 R~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi 486 (535)
T PRK15375 408 DQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAA 486 (535)
T ss_pred EEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHH
Confidence 0 0 1333344 788988664 44577777777664321 234 79999999999999999
Q ss_pred HHHHHcC-CCHHHHHHHHHHhCCC-CCCCccccccc
Q psy15044 120 YLVYFLG-MTPERAITTLRLARPG-SLECHFCNKEE 153 (154)
Q Consensus 120 ~l~~~~g-~~~~~a~~~~r~~Rp~-~i~~~~q~k~~ 153 (154)
+++...+ .++++++..+|..|++ ++++.+||..+
T Consensus 487 ~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l 522 (535)
T PRK15375 487 LVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQL 522 (535)
T ss_pred HHHhccccCCHHHHHHHHHhcCCccccccHHHHHHH
Confidence 9987544 5999999999999999 99999998643
No 25
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.62 E-value=2.2e-15 Score=110.89 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=96.4
Q ss_pred CceeEeec----CceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCc------CCCcccC------------------
Q psy15044 16 RNFSWIVP----DELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECI------PDGIERY------------------ 64 (154)
Q Consensus 16 ~~~~~i~~----~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~------~~~~~~~------------------ 64 (154)
.|.+||.. ..++....|.. .+-++.+.+.+++.||.|+...+ ..+++..
T Consensus 57 InAs~v~~~~~~~~fI~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~ 136 (258)
T smart00194 57 INASYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEK 136 (258)
T ss_pred eeeeeEecCCCccceEEeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEe
Confidence 45677742 34666666632 23456678889999999998541 0000000
Q ss_pred -------------------CCCeEEE-eecCCCCCC-CHHHHHHHHHHHHHHHhC-CCcEEEeCCCCCChHHHHHHHHHH
Q psy15044 65 -------------------EPLNWIL-IPVEEYHAP-TMRQVIKFIEFCVNCRQK-GEAVGVHCRSGRGRTGVMAACYLV 122 (154)
Q Consensus 65 -------------------~~~~~~~-~p~~d~~~p-~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~a~~l~ 122 (154)
..+.+++ ..|+|.+.| +...+.+++..+...... ++||+|||.+|.||||++++++++
T Consensus 137 ~~~~~~~~l~v~~~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~ 216 (258)
T smart00194 137 VDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDIL 216 (258)
T ss_pred cCCEEEEEEEEEECCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHH
Confidence 0133333 367788877 455677788777776543 689999999999999999999876
Q ss_pred HH-----cCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 123 YF-----LGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 123 ~~-----~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
.. ..+++.+++..+|++|++++++..|+.
T Consensus 217 ~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~ 250 (258)
T smart00194 217 LQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYI 250 (258)
T ss_pred HHHHHHcCCCCHHHHHHHHHhccccccCCHHHHH
Confidence 43 267999999999999999999999975
No 26
>PHA02738 hypothetical protein; Provisional
Probab=99.62 E-value=9.7e-15 Score=110.45 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=92.6
Q ss_pred CceeEee----cCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCc------CCCcccC------------------
Q psy15044 16 RNFSWIV----PDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECI------PDGIERY------------------ 64 (154)
Q Consensus 16 ~~~~~i~----~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~------~~~~~~~------------------ 64 (154)
.|.+||. +.+++....|.. .+-++.+.++++..||.|+...+ ..+++..
T Consensus 78 INAsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~~~ 157 (320)
T PHA02738 78 INANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVE 157 (320)
T ss_pred eEeEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEEEE
Confidence 3557773 235777777743 23345677889999999997531 0111100
Q ss_pred ---------------C----CCeEE-EeecCCCCCCC-HHHHHHHHHHHHHHHh--------------CCCcEEEeCCCC
Q psy15044 65 ---------------E----PLNWI-LIPVEEYHAPT-MRQVIKFIEFCVNCRQ--------------KGEAVGVHCRSG 109 (154)
Q Consensus 65 ---------------~----~~~~~-~~p~~d~~~p~-~~~~~~~~~~i~~~~~--------------~~~~vlVHC~~G 109 (154)
. .+.++ ...|+|.+.|. ...+.+++..+....+ ..+||+|||++|
T Consensus 158 ~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~G 237 (320)
T PHA02738 158 THPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAG 237 (320)
T ss_pred ecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCC
Confidence 0 12222 33778888775 4456666666654321 136999999999
Q ss_pred CChHHHHHHHHHHHHc-----CCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 110 RGRTGVMAACYLVYFL-----GMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 110 ~~Rsg~~~a~~l~~~~-----g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
.||||++||+..+..+ .++..+++..+|++|+++++|..||.
T Consensus 238 iGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~ 284 (320)
T PHA02738 238 LGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYF 284 (320)
T ss_pred CChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHH
Confidence 9999999998864432 56999999999999999999999984
No 27
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=9e-14 Score=88.65 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=88.9
Q ss_pred eeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCccc---------CCCCeEEEeecCCCCCCCHHHHHHH
Q psy15044 18 FSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIPDGIER---------YEPLNWILIPVEEYHAPTMRQVIKF 88 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~---------~~~~~~~~~p~~d~~~p~~~~~~~~ 88 (154)
+..| .+.+..++++ +.+|+..++.+|+++|||.+++.+++..+. ..|+.|.++|+.... .+.+.+..+
T Consensus 3 i~~I-~d~lsVsgQi-~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-iT~~dV~~f 79 (130)
T COG3453 3 IRRI-NDRLSVSGQI-SPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-ITEADVEAF 79 (130)
T ss_pred ceec-ccceeecCCC-CHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-CCHHHHHHH
Confidence 4455 5669999999 899999999999999999999984433221 259999999996544 466667777
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLA 139 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~ 139 (154)
.+.+++.. +|||.||+.| .||-++...-. ...||+.+++.++-+..
T Consensus 80 ~~Al~eae---gPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 80 QRALDEAE---GPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHhC---CCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 77777653 8999999999 69987766655 44799999988776543
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.57 E-value=1.3e-14 Score=109.00 Aligned_cols=135 Identities=15% Similarity=0.103 Sum_probs=91.6
Q ss_pred ceeEee----cCceeeecCCCC--H-HHHHHHHHCCCcEEEEcCCCCc------CCCcccC-------------------
Q psy15044 17 NFSWIV----PDELAAMACPDT--R-DHLKTLSYRGVCHLVSLSEECI------PDGIERY------------------- 64 (154)
Q Consensus 17 ~~~~i~----~~~~~~~~~p~~--~-~~~~~l~~~gi~~Vv~l~~~~~------~~~~~~~------------------- 64 (154)
|.++|. +..++....|.. . +-++.+.++++..||.|+...+ ..+++..
T Consensus 82 NAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~ 161 (303)
T PHA02742 82 NASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKS 161 (303)
T ss_pred EEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEEEE
Confidence 456663 235666666632 3 3456678889999999987430 0111100
Q ss_pred ---------------C----CCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHh------------CCCcEEEeCCCCCC
Q psy15044 65 ---------------E----PLNWIL-IPVEEYHAPT-MRQVIKFIEFCVNCRQ------------KGEAVGVHCRSGRG 111 (154)
Q Consensus 65 ---------------~----~~~~~~-~p~~d~~~p~-~~~~~~~~~~i~~~~~------------~~~~vlVHC~~G~~ 111 (154)
. .+.+++ ..|+|++.|. ...+.+++..+..... ..+||+|||++|.|
T Consensus 162 ~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvG 241 (303)
T PHA02742 162 FRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLD 241 (303)
T ss_pred cCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCc
Confidence 0 122223 3778888775 4456667766654321 13799999999999
Q ss_pred hHHHHHHHHHHHHc-----CCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 112 RTGVMAACYLVYFL-----GMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 112 Rsg~~~a~~l~~~~-----g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
|||+++|+..+..+ .++..+++..+|++|+++++|.+||.
T Consensus 242 RTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~ 286 (303)
T PHA02742 242 RAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYI 286 (303)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHH
Confidence 99999998865532 56899999999999999999999985
No 29
>KOG2283|consensus
Probab=99.56 E-value=3.2e-14 Score=110.53 Aligned_cols=139 Identities=23% Similarity=0.314 Sum_probs=104.4
Q ss_pred hhhcCCCCceeEeecCceeeecCCCCH----------HHHHHHHHC--CCcEEEEcCCCC-cCCCcccCCCCeEEEeecC
Q psy15044 9 AKEKEGPRNFSWIVPDELAAMACPDTR----------DHLKTLSYR--GVCHLVSLSEEC-IPDGIERYEPLNWILIPVE 75 (154)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~p~~~----------~~~~~l~~~--gi~~Vv~l~~~~-~~~~~~~~~~~~~~~~p~~ 75 (154)
....+-..++++|. .+|+.+++|... +-..+|... |-..|.||+.+. ++. ... .-....++|+
T Consensus 6 ~~~~~~DLDltYIT-~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~--~~f-~g~V~~~~~~ 81 (434)
T KOG2283|consen 6 YNEGGFDLDLTYIT-SRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDP--SRF-HGRVARFGFD 81 (434)
T ss_pred hhhccccccceeee-eeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCc--ccc-ccceeecCCC
Confidence 44566778899995 559999999541 223455443 666799999654 222 222 2356679999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC--CcEEEeCCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHHhC---C--CCCCCc
Q psy15044 76 EYHAPTMRQVIKFIEFCVNCRQKG--EAVGVHCRSGRGRTGVMAACYLVYFLGM-TPERAITTLRLAR---P--GSLECH 147 (154)
Q Consensus 76 d~~~p~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~Rsg~~~a~~l~~~~g~-~~~~a~~~~r~~R---p--~~i~~~ 147 (154)
|+.+|+++.+..+++-+++|+... ..++|||.+|++|||+++++||++.... ++++|++++-.+| . ..+..+
T Consensus 82 Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~P 161 (434)
T KOG2283|consen 82 DHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIP 161 (434)
T ss_pred CCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCc
Confidence 999999999999999999998754 5699999999999999999999995444 5999999999988 3 234555
Q ss_pred cccc
Q psy15044 148 FCNK 151 (154)
Q Consensus 148 ~q~k 151 (154)
-|+|
T Consensus 162 Sq~R 165 (434)
T KOG2283|consen 162 SQRR 165 (434)
T ss_pred hhhH
Confidence 5544
No 30
>KOG1572|consensus
Probab=99.56 E-value=3.6e-14 Score=100.58 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=96.0
Q ss_pred cCCCCceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCCcC---CCcccCCCCeEEEeecCCCC----CC---C
Q psy15044 12 KEGPRNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEECIP---DGIERYEPLNWILIPVEEYH----AP---T 81 (154)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~p~~d~~----~p---~ 81 (154)
.-+|.||+-|.+ .||++++| ...++.+|+.++.++|+.|+++.++ ..+....+|+++++-+...- .| .
T Consensus 54 lipPlnFs~V~~-~lyRSg~P-~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~ 131 (249)
T KOG1572|consen 54 LIPPLNFSMVDN-GLYRSGFP-RPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNI 131 (249)
T ss_pred ecCCcccccccc-ceeecCCC-CccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCC
Confidence 467899998866 59999999 7889999999999999999999632 22445679999999887643 22 2
Q ss_pred HH-HHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 82 MR-QVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 82 ~~-~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
.. .+..+++++-. ..+.|+|+||..|..|||++++|.- +.++|+..-.++..+.
T Consensus 132 ~~~~i~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 132 PDHSIRKALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred hHHHHHHHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHH
Confidence 22 36666666433 4568999999999999999999988 6689999888876654
No 31
>KOG0792|consensus
Probab=99.55 E-value=3.4e-14 Score=117.47 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=66.9
Q ss_pred ecCCCCCCC-HHHHHHHHHHHHHHHhC-CCcEEEeCCCCCChHHHHHHHHHHHH-----cCCCHHHHHHHHHHhCCCCCC
Q psy15044 73 PVEEYHAPT-MRQVIKFIEFCVNCRQK-GEAVGVHCRSGRGRTGVMAACYLVYF-----LGMTPERAITTLRLARPGSLE 145 (154)
Q Consensus 73 p~~d~~~p~-~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~a~~l~~~-----~g~~~~~a~~~~r~~Rp~~i~ 145 (154)
.|+|++.|+ ...|..|++.+...+.. +.||+|||++|+||||+++.+-++.. ..+...+.++.+|.+|-.+|+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 677999886 45688888888888765 67999999999999999886544332 267999999999999999999
Q ss_pred Cccccc
Q psy15044 146 CHFCNK 151 (154)
Q Consensus 146 ~~~q~k 151 (154)
|..|||
T Consensus 1115 T~~QYk 1120 (1144)
T KOG0792|consen 1115 TLSQYK 1120 (1144)
T ss_pred chHHhh
Confidence 999997
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.54 E-value=3.4e-14 Score=107.22 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=91.5
Q ss_pred ceeEee----cCceeeecCCCC--H-HHHHHHHHCCCcEEEEcCCCC-cC------CCcccC------------------
Q psy15044 17 NFSWIV----PDELAAMACPDT--R-DHLKTLSYRGVCHLVSLSEEC-IP------DGIERY------------------ 64 (154)
Q Consensus 17 ~~~~i~----~~~~~~~~~p~~--~-~~~~~l~~~gi~~Vv~l~~~~-~~------~~~~~~------------------ 64 (154)
|.+||. +..++....|.. . +-++.+.++++..||.|+... +. .+++..
T Consensus 82 NAsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~ 161 (312)
T PHA02747 82 HANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLKTS 161 (312)
T ss_pred EeeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEEEEE
Confidence 457773 345667777732 2 334566788999999998743 10 111100
Q ss_pred --------------------CCCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHh-----------CCCcEEEeCCCCCC
Q psy15044 65 --------------------EPLNWIL-IPVEEYHAPT-MRQVIKFIEFCVNCRQ-----------KGEAVGVHCRSGRG 111 (154)
Q Consensus 65 --------------------~~~~~~~-~p~~d~~~p~-~~~~~~~~~~i~~~~~-----------~~~~vlVHC~~G~~ 111 (154)
..+.+++ ..|+|++.|. ...+.+++..++...+ ..+||+|||++|.|
T Consensus 162 ~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvG 241 (312)
T PHA02747 162 VRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVG 241 (312)
T ss_pred ecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCc
Confidence 0122222 3778888775 4456666666654321 12699999999999
Q ss_pred hHHHHHHHHHHHH-----cCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 112 RTGVMAACYLVYF-----LGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 112 Rsg~~~a~~l~~~-----~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
|||+++|+..+.. ..++..+++..+|.+|+++++|..||.
T Consensus 242 RtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~ 286 (312)
T PHA02747 242 KTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYL 286 (312)
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHH
Confidence 9999999875443 256999999999999999999999985
No 33
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.53 E-value=5.1e-14 Score=106.66 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=91.8
Q ss_pred CceeEee----cCceeeecCCCC---HHHHHHHHHCCCcEEEEcCCCCc-----CCCcccC-------------------
Q psy15044 16 RNFSWIV----PDELAAMACPDT---RDHLKTLSYRGVCHLVSLSEECI-----PDGIERY------------------- 64 (154)
Q Consensus 16 ~~~~~i~----~~~~~~~~~p~~---~~~~~~l~~~gi~~Vv~l~~~~~-----~~~~~~~------------------- 64 (154)
.|.+||. +..++....|.. .+-++.+.++++..||.|+.... ..+++..
T Consensus 101 INAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~~~kc~~YWP~~~~~~~~~g~~~V~~~~~~~ 180 (323)
T PHA02746 101 IHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDDDEKCFELWTKEEDSELAFGRFVAKILDIIE 180 (323)
T ss_pred EEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccCCccCCCCCCCCCCCCeEEcCEEEEEEEEEE
Confidence 3556663 346666666632 24456677889999999986420 0011000
Q ss_pred -------------------CCCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHh-----------CCCcEEEeCCCCCCh
Q psy15044 65 -------------------EPLNWIL-IPVEEYHAPT-MRQVIKFIEFCVNCRQ-----------KGEAVGVHCRSGRGR 112 (154)
Q Consensus 65 -------------------~~~~~~~-~p~~d~~~p~-~~~~~~~~~~i~~~~~-----------~~~~vlVHC~~G~~R 112 (154)
..+.+++ ..|+|.+.|. ...+.+++..+..... ..+||+|||++|.||
T Consensus 181 ~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR 260 (323)
T PHA02746 181 ELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGR 260 (323)
T ss_pred cCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCc
Confidence 0122222 3777888775 4556777766654321 127999999999999
Q ss_pred HHHHHHHHHHHH-----cCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 113 TGVMAACYLVYF-----LGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 113 sg~~~a~~l~~~-----~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
||++||+..+.. ..++..+++..+|.+|+++++|.+||.
T Consensus 261 TGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~ 304 (323)
T PHA02746 261 AGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYA 304 (323)
T ss_pred chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHH
Confidence 999999776442 257999999999999999999999984
No 34
>KOG0790|consensus
Probab=99.43 E-value=5.9e-14 Score=107.24 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=66.3
Q ss_pred eEEEeecCCCCCCCHH-HHHHHHHHHHHHH---hCCCcEEEeCCCCCChHHHHHHHHHHH----Hc----CCCHHHHHHH
Q psy15044 68 NWILIPVEEYHAPTMR-QVIKFIEFCVNCR---QKGEAVGVHCRSGRGRTGVMAACYLVY----FL----GMTPERAITT 135 (154)
Q Consensus 68 ~~~~~p~~d~~~p~~~-~~~~~~~~i~~~~---~~~~~vlVHC~~G~~Rsg~~~a~~l~~----~~----g~~~~~a~~~ 135 (154)
+|+.+.|+|++.|... .+..|++-++... ...+||+|||+||+||||++++.-.+. .. .++....++.
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqm 495 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQM 495 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHH
Confidence 5666788899988754 4677777766542 234799999999999999998766443 22 4588899999
Q ss_pred HHHhCCCCCCCccccc
Q psy15044 136 LRLARPGSLECHFCNK 151 (154)
Q Consensus 136 ~r~~Rp~~i~~~~q~k 151 (154)
+|++|.++++|..|||
T Consensus 496 VRsqRSGmVQTEaQYk 511 (600)
T KOG0790|consen 496 VRSQRSGMVQTEAQYK 511 (600)
T ss_pred HHHHhcchhhhHHhHH
Confidence 9999999999999997
No 35
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.38 E-value=1.5e-12 Score=94.13 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=94.7
Q ss_pred CceeEee----cCceeeecCCC--CH-HHHHHHHHCCCcEEEEcCCCCc------CCCcccC------------------
Q psy15044 16 RNFSWIV----PDELAAMACPD--TR-DHLKTLSYRGVCHLVSLSEECI------PDGIERY------------------ 64 (154)
Q Consensus 16 ~~~~~i~----~~~~~~~~~p~--~~-~~~~~l~~~gi~~Vv~l~~~~~------~~~~~~~------------------ 64 (154)
.|.++|. ...++.+..|. +. +-++.+.+.+++.||.|+.... ...++..
T Consensus 30 i~A~~v~~~~~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P~~~~~~~~~g~~~V~~~~~~ 109 (235)
T PF00102_consen 30 INASYVDGYKNGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWPLKEGESLKFGDYTVKCKEKI 109 (235)
T ss_dssp ESEEEEEESSSTEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TSTSSSSSEEEETTEEEEEEEEE
T ss_pred hhhhhhccccchhhheeecccccccccceehheeeccccceecccccccccccccccccccccccccccccccccccccc
Confidence 4667773 44677777772 22 3346678889999999998751 0111100
Q ss_pred ------------------CC-----CeEEEe-ecCCCCCC-CHHHHHHHHHHHHHHH-hCCCcEEEeCCCCCChHHHHHH
Q psy15044 65 ------------------EP-----LNWILI-PVEEYHAP-TMRQVIKFIEFCVNCR-QKGEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 65 ------------------~~-----~~~~~~-p~~d~~~p-~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~a 118 (154)
.+ +.++++ .|++...| +...+..+++.+.... ..++|++|||..|.||||++++
T Consensus 110 ~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~ 189 (235)
T PF00102_consen 110 EENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCA 189 (235)
T ss_dssp EEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHH
T ss_pred cccccceEEeeccccccccccccccccceeeeeccccccccccchhhhhhhhccccccCCccceEeeccccccccccccc
Confidence 01 223333 67777666 3455666777776665 3458999999999999999999
Q ss_pred HHHHHHc-----CCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 119 CYLVYFL-----GMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 119 ~~l~~~~-----g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
+.++..+ .++..+++..+|++|++++++..|+.
T Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~ 227 (235)
T PF00102_consen 190 IDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYR 227 (235)
T ss_dssp HHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHH
T ss_pred chhhccccccccchhhHHHHHHHHhhCCCccCCHHHHH
Confidence 8876533 46999999999999999999999974
No 36
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.31 E-value=9.3e-13 Score=94.88 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=57.4
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCC--------------CHHHHHHHHHH
Q psy15044 73 PVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGM--------------TPERAITTLRL 138 (154)
Q Consensus 73 p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~--------------~~~~a~~~~r~ 138 (154)
.|.|...|+...+.+++..+.....+++|++|||+||.||||||+|...+...-- ...+.+..+|+
T Consensus 192 nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRs 271 (302)
T COG5599 192 NWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRS 271 (302)
T ss_pred CccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHH
Confidence 6778888854444444444443322568999999999999999999887664411 13456778899
Q ss_pred hCCCCCCCccccc
Q psy15044 139 ARPGSLECHFCNK 151 (154)
Q Consensus 139 ~Rp~~i~~~~q~k 151 (154)
+|-.++++..|.|
T Consensus 272 QRmkmVQn~~Qf~ 284 (302)
T COG5599 272 QRMKMVQNKTQFK 284 (302)
T ss_pred HHHHHHHhHHHHH
Confidence 9999999999876
No 37
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=99.28 E-value=7.3e-12 Score=85.03 Aligned_cols=59 Identities=29% Similarity=0.512 Sum_probs=47.1
Q ss_pred CCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHH
Q psy15044 64 YEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY 123 (154)
Q Consensus 64 ~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~ 123 (154)
..|+.|+++|+.|...|..+.+++|++++... .++..+.+||.+|.|||.+++++|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999999999999999999998 667899999999999999999998765
No 38
>KOG0793|consensus
Probab=99.19 E-value=8.1e-11 Score=94.48 Aligned_cols=116 Identities=20% Similarity=0.296 Sum_probs=82.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCC------cccC--------------------------------------CCC-eE
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDG------IERY--------------------------------------EPL-NW 69 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~------~~~~--------------------------------------~~~-~~ 69 (154)
++-++.+.+.|...||+|+... +.. ++.. .-+ +|
T Consensus 817 A~FWQmvWe~G~~vIV~Lt~l~-Engv~qc~rYWPdeGselyhiyEV~LVSEHIWceDfLVRSFYLKNlqtseTRTvTQF 895 (1004)
T KOG0793|consen 817 ADFWQMVWESGCVVIVMLTPLA-ENGVRQCYRYWPDEGSELYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSETRTVTQF 895 (1004)
T ss_pred HHHHHHHHHcCcEEEEEecChh-hcchhhhhhcCCCCCcceeeeEEeeeehhhhhhhhHHHHHHHHhhcccccceeeeee
Confidence 3445778899999999999865 111 1110 122 45
Q ss_pred EEeecCCCCCCCHH-HHHHHHHHHHHHH-hCCCcEEEeCCCCCChHHHHHHHHHHHHc---C---CCHHHHHHHHHHhCC
Q psy15044 70 ILIPVEEYHAPTMR-QVIKFIEFCVNCR-QKGEAVGVHCRSGRGRTGVMAACYLVYFL---G---MTPERAITTLRLARP 141 (154)
Q Consensus 70 ~~~p~~d~~~p~~~-~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~---g---~~~~~a~~~~r~~Rp 141 (154)
+.+.|++.+.|... .+..|-..+.... -...||+|||+.|.||||+.++.-++... | ++....++++|.+||
T Consensus 896 HfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~ 975 (1004)
T KOG0793|consen 896 HFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRP 975 (1004)
T ss_pred eeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCC
Confidence 55688888888654 3666666665543 23479999999999999998876654422 3 477778999999999
Q ss_pred CCCCCccccc
Q psy15044 142 GSLECHFCNK 151 (154)
Q Consensus 142 ~~i~~~~q~k 151 (154)
+++.|.+|-|
T Consensus 976 GmVaTkdQFe 985 (1004)
T KOG0793|consen 976 GMVATKDQFE 985 (1004)
T ss_pred cceeehhhhH
Confidence 9999998864
No 39
>KOG0791|consensus
Probab=99.17 E-value=6.8e-11 Score=88.79 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=64.2
Q ss_pred eEEEeecCCCCCCCH-HHHHHHHHHHHHHHh-CCCcEEEeCCCCCChHHHHHHHHHHHHc-----CCCHHHHHHHHHHhC
Q psy15044 68 NWILIPVEEYHAPTM-RQVIKFIEFCVNCRQ-KGEAVGVHCRSGRGRTGVMAACYLVYFL-----GMTPERAITTLRLAR 140 (154)
Q Consensus 68 ~~~~~p~~d~~~p~~-~~~~~~~~~i~~~~~-~~~~vlVHC~~G~~Rsg~~~a~~l~~~~-----g~~~~~a~~~~r~~R 140 (154)
+++...|+|++.|+. ..+.+++..+.+... ..+|++|||++|.|||||++|+..+..+ -++...++..+|+.|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 344557889998853 336666666666653 3479999999999999999998865533 346778888999999
Q ss_pred CCCCCCcccc
Q psy15044 141 PGSLECHFCN 150 (154)
Q Consensus 141 p~~i~~~~q~ 150 (154)
+.+++|..||
T Consensus 334 ~~mVqte~Qy 343 (374)
T KOG0791|consen 334 MLMVQTEDQY 343 (374)
T ss_pred ccccchHHHH
Confidence 9999999987
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-10 Score=85.39 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=73.4
Q ss_pred CCceeEeecCceeeecCCCCHHH-HHHHHHCCCcEEEEcCCCC-cCCCccc--------CCCCeEEEeecCCCCCCCHHH
Q psy15044 15 PRNFSWIVPDELAAMACPDTRDH-LKTLSYRGVCHLVSLSEEC-IPDGIER--------YEPLNWILIPVEEYHAPTMRQ 84 (154)
Q Consensus 15 ~~~~~~i~~~~~~~~~~p~~~~~-~~~l~~~gi~~Vv~l~~~~-~~~~~~~--------~~~~~~~~~p~~d~~~p~~~~ 84 (154)
+.++.-+.+...|+++.|...+- .+....+++++++++..+. ....... ...+....++........
T Consensus 44 ~~~~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 120 (249)
T COG2365 44 PLNFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDA--- 120 (249)
T ss_pred ccccccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhh---
Confidence 34455555778999999944222 2477788999999999722 0111111 111222222221122222
Q ss_pred HHHHHHHHHHHHhC-CCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy15044 85 VIKFIEFCVNCRQK-GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSL 144 (154)
Q Consensus 85 ~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i 144 (154)
.+.+..++.-.+.. ++|||+||.+|++|||.++|+|+....+.+...+-+++..-+++..
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~ 181 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEP 181 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccch
Confidence 23333333333333 4899999999999999999999988444444456666666555543
No 41
>KOG0789|consensus
Probab=99.05 E-value=5.5e-10 Score=87.33 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=56.3
Q ss_pred EEEeecCCCCCCCH-HHHHHHHHH-HHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHc------CCCHHHHHHHHHHhC
Q psy15044 69 WILIPVEEYHAPTM-RQVIKFIEF-CVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFL------GMTPERAITTLRLAR 140 (154)
Q Consensus 69 ~~~~p~~d~~~p~~-~~~~~~~~~-i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~------g~~~~~a~~~~r~~R 140 (154)
|++..|+|.+.|.. ..+..++.. ........+|++|||++|.||||++++...+... ..+..+.+..+|.+|
T Consensus 267 ~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR 346 (415)
T KOG0789|consen 267 YHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQR 346 (415)
T ss_pred EeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence 44447777766652 223333332 1222234589999999999999999986632222 235888889999999
Q ss_pred CCCCCCcccc
Q psy15044 141 PGSLECHFCN 150 (154)
Q Consensus 141 p~~i~~~~q~ 150 (154)
++++++..|+
T Consensus 347 ~~~vqt~~Qy 356 (415)
T KOG0789|consen 347 PGAVQSPLQY 356 (415)
T ss_pred hhcccchhHH
Confidence 9999999997
No 42
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.00 E-value=7.6e-09 Score=69.02 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHCCCcEEEEcCCCCcCCCc-----ccCCCCe--EEEeecCCC--CCCCHHHHHHHHHHHHHHHhCCCcEEEeC
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECIPDGI-----ERYEPLN--WILIPVEEY--HAPTMRQVIKFIEFCVNCRQKGEAVGVHC 106 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~~~~~-----~~~~~~~--~~~~p~~d~--~~p~~~~~~~~~~~i~~~~~~~~~vlVHC 106 (154)
.-.+...+.|-+++|+|.... .... .....+. +-.+..+|. ..|...++...++|++++-+. .|++|||
T Consensus 23 ~~ae~~~rh~~t~mlsl~a~~-t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC 100 (172)
T COG5350 23 VIAETAARHGPTHMLSLLAKG-TYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHC 100 (172)
T ss_pred HHHHHHhhcCCceEEEeeccc-ccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeee
Confidence 344566677999999999875 2111 1111222 222222222 356778899999999998654 6999999
Q ss_pred CCCCChHHHHHHH-HHHHHcCCCHHHHHHHHHHhCCCCCCCc
Q psy15044 107 RSGRGRTGVMAAC-YLVYFLGMTPERAITTLRLARPGSLECH 147 (154)
Q Consensus 107 ~~G~~Rsg~~~a~-~l~~~~g~~~~~a~~~~r~~Rp~~i~~~ 147 (154)
.+|+|||.+.+.. -+.....++..+..+.+|..+|.+-+++
T Consensus 101 ~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~ 142 (172)
T COG5350 101 YAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNP 142 (172)
T ss_pred ccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCCh
Confidence 9999999765433 2233468899999999999999885553
No 43
>KOG4228|consensus
Probab=98.97 E-value=2.1e-10 Score=96.14 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=60.8
Q ss_pred eEEEe-ecCCCCCCCHH-HHHHHHHHHHHHHh-CCCcEEEeCCCCCChHHHHHHHHHHHH-----cCCCHHHHHHHHHHh
Q psy15044 68 NWILI-PVEEYHAPTMR-QVIKFIEFCVNCRQ-KGEAVGVHCRSGRGRTGVMAACYLVYF-----LGMTPERAITTLRLA 139 (154)
Q Consensus 68 ~~~~~-p~~d~~~p~~~-~~~~~~~~i~~~~~-~~~~vlVHC~~G~~Rsg~~~a~~l~~~-----~g~~~~~a~~~~r~~ 139 (154)
..+|+ .|+|++.|... .+.+|+.-+..... ..||++|||++|.||||++++.-.|.. ..++.-.-+..+|.+
T Consensus 696 ~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~Q 775 (1087)
T KOG4228|consen 696 RQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQ 775 (1087)
T ss_pred eeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhc
Confidence 33343 78899887643 35555544444331 338999999999999999887654442 255888889999999
Q ss_pred CCCCCCCcccc
Q psy15044 140 RPGSLECHFCN 150 (154)
Q Consensus 140 Rp~~i~~~~q~ 150 (154)
|..+++|.+||
T Consensus 776 R~~mVQt~eQY 786 (1087)
T KOG4228|consen 776 RNNMVQTEEQY 786 (1087)
T ss_pred cccccccHHHH
Confidence 99999999997
No 44
>KOG2386|consensus
Probab=98.95 E-value=1.6e-09 Score=82.93 Aligned_cols=117 Identities=22% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHHC--CCcEEEEcCCCC--cCCCcccCCCCeEEEeecCCCC-CCCHHHHHHHHHHHHHHHh----CCCcEEEe
Q psy15044 35 RDHLKTLSYR--GVCHLVSLSEEC--IPDGIERYEPLNWILIPVEEYH-APTMRQVIKFIEFCVNCRQ----KGEAVGVH 105 (154)
Q Consensus 35 ~~~~~~l~~~--gi~~Vv~l~~~~--~~~~~~~~~~~~~~~~p~~d~~-~p~~~~~~~~~~~i~~~~~----~~~~vlVH 105 (154)
.+.+..++.+ .+.-+++|+... ++.......|+.|+.+...... .|+......|++.++.... .+.-|+||
T Consensus 51 ~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vh 130 (393)
T KOG2386|consen 51 KDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVH 130 (393)
T ss_pred HHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEe
Confidence 4566777776 455689998876 4344456678999988777765 6666666666666665443 45779999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCccccc
Q psy15044 106 CRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 106 C~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
|..|++|||-++++||+...+++..+|++.+...|+..+......+
T Consensus 131 cthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~ 176 (393)
T KOG2386|consen 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYID 176 (393)
T ss_pred CCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHH
Confidence 9999999999999999999999999999999999999887665443
No 45
>KOG4228|consensus
Probab=98.89 E-value=5.7e-09 Score=87.76 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=82.4
Q ss_pred cCceeeecCC--CCHHH-HHHHHHCCCcEEEEcCCCCcCC-----CcccC------------------------------
Q psy15044 23 PDELAAMACP--DTRDH-LKTLSYRGVCHLVSLSEECIPD-----GIERY------------------------------ 64 (154)
Q Consensus 23 ~~~~~~~~~p--~~~~~-~~~l~~~gi~~Vv~l~~~~~~~-----~~~~~------------------------------ 64 (154)
+..+..+..| .+.+| ++.+.+++.++||.|.... +. +....
T Consensus 894 ~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~-~~~~C~qyw~~~g~~~yg~i~Ve~~~~~~~~~~t~r~f~i~n 972 (1087)
T KOG4228|consen 894 PKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELK-HPEKCPQYWPPEGSQRYGPIEVEDMNEHINPQYTAREFGVTN 972 (1087)
T ss_pred cceEEEecCCcccchHHHHHHhhccceeEEEEecccC-cccccccccCCcCceecCcEEEEecccccchhhhhhhheeee
Confidence 4556666666 34444 4667888999999998765 21 00000
Q ss_pred ---------CCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCChHHHHHHHHHHHHc-----CCC
Q psy15044 65 ---------EPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQ--KGEAVGVHCRSGRGRTGVMAACYLVYFL-----GMT 128 (154)
Q Consensus 65 ---------~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rsg~~~a~~l~~~~-----g~~ 128 (154)
..++|..+|..+....+...+.........+.+ ..+|+.|||..|.||||+++|+-++..+ -++
T Consensus 973 ~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vD 1052 (1087)
T KOG4228|consen 973 EREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVD 1052 (1087)
T ss_pred ccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCcee
Confidence 022333344433222222223333333333332 2589999999999999999987765432 359
Q ss_pred HHHHHHHHHHhCCCCCCCccccc
Q psy15044 129 PERAITTLRLARPGSLECHFCNK 151 (154)
Q Consensus 129 ~~~a~~~~r~~Rp~~i~~~~q~k 151 (154)
..++++.+|..||+++++.+||+
T Consensus 1053 Vfq~vk~Lr~~rp~mv~t~~QY~ 1075 (1087)
T KOG4228|consen 1053 VFQTVKTLRFQRPGMVDTSDQYQ 1075 (1087)
T ss_pred eehhhhhhhhcCccccCcHHHHH
Confidence 99999999999999999999986
No 46
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.54 E-value=0.00029 Score=47.21 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC---CCcEEEeCCCCCCh----HHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 75 EEYHAPTMRQVIKFIEFCVNCRQK---GEAVGVHCRSGRGR----TGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 75 ~d~~~p~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~R----sg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
.|+++.++..+-+++..+++.+++ .++.+|||++.-.+ ++.++++|.+..+|||+++|++-+.+.-
T Consensus 39 ~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 39 ADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp S------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 588888999999999999888765 46888998876543 4678899999999999999999987664
No 47
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.38 E-value=0.0021 Score=51.11 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred HCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCC--H-HHHHHHHHHHHHHHhC--CCcEEEeCCCCCChHHHHH
Q psy15044 43 YRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPT--M-RQVIKFIEFCVNCRQK--GEAVGVHCRSGRGRTGVMA 117 (154)
Q Consensus 43 ~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~--~-~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rsg~~~ 117 (154)
...+..||++.... ...........++++++...-.-+ + ..+.+++.++...+.+ +.+|+|+|..|.+.|..++
T Consensus 316 ~~~~~~vI~~s~~~-~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVa 394 (451)
T PF04179_consen 316 ESEFDCVINCSESP-TPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVA 394 (451)
T ss_pred CCCcCEEEEcCCCc-ccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHH
Confidence 34788899998876 222333456789999987653222 2 3578888888888776 7899999999999999888
Q ss_pred HHHHHHHc
Q psy15044 118 ACYLVYFL 125 (154)
Q Consensus 118 a~~l~~~~ 125 (154)
.+.|+..+
T Consensus 395 LaILc~~F 402 (451)
T PF04179_consen 395 LAILCKLF 402 (451)
T ss_pred HHHHHHhc
Confidence 88887765
No 48
>PLN02160 thiosulfate sulfurtransferase
Probab=97.27 E-value=0.0015 Score=43.67 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCC----CCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYH----APTMRQVIKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~----~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
.+++..+.+.+ ..|||+++.. +-.....+|-..+++|+.+.. ..+.+ +...+......+.+|++||..|
T Consensus 19 ~~e~~~~~~~~-~~lIDVR~~~-E~~~ghIpgA~~iniP~~~~~~~~~l~~~~----~~~~~~~~~~~~~~IivyC~sG- 91 (136)
T PLN02160 19 VSQAKTLLQSG-HQYLDVRTQD-EFRRGHCEAAKIVNIPYMLNTPQGRVKNQE----FLEQVSSLLNPADDILVGCQSG- 91 (136)
T ss_pred HHHHHHHHhCC-CEEEECCCHH-HHhcCCCCCcceecccchhcCcccccCCHH----HHHHHHhccCCCCcEEEECCCc-
Confidence 45565555556 4699999987 322223333334556653221 11112 2222222234567999999999
Q ss_pred ChHHHHHHHHHHHHcCCC
Q psy15044 111 GRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 111 ~Rsg~~~a~~l~~~~g~~ 128 (154)
.||. .++..| ...|++
T Consensus 92 ~RS~-~Aa~~L-~~~G~~ 107 (136)
T PLN02160 92 ARSL-KATTEL-VAAGYK 107 (136)
T ss_pred HHHH-HHHHHH-HHcCCC
Confidence 5887 444444 446764
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=96.71 E-value=0.018 Score=35.99 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHH--HhCCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNC--RQKGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~R 112 (154)
.+++..+.+.+=..|||+++.. +-.....+| -+++|+.+. ..+...+... ...+.+|+|+|..| .|
T Consensus 6 ~~~l~~~~~~~~~~iiDvR~~~-e~~~ghi~g--A~~ip~~~~--------~~~~~~~~~~~~~~~~~~ivvyC~~G-~r 73 (101)
T cd01518 6 PAEWNELLEDPEVVLLDVRNDY-EYDIGHFKG--AVNPDVDTF--------REFPFWLDENLDLLKGKKVLMYCTGG-IR 73 (101)
T ss_pred HHHHHHHHcCCCEEEEEcCChh-hhhcCEecc--ccCCCcccH--------hHhHHHHHhhhhhcCCCEEEEECCCc-hh
Confidence 4555554444445789999876 322222222 233444321 1111112111 14557999999998 58
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15044 113 TGVMAACYLVYFLGMT 128 (154)
Q Consensus 113 sg~~~a~~l~~~~g~~ 128 (154)
|.. ++.+| ...|.+
T Consensus 74 s~~-a~~~L-~~~G~~ 87 (101)
T cd01518 74 CEK-ASAYL-KERGFK 87 (101)
T ss_pred HHH-HHHHH-HHhCCc
Confidence 874 44455 446764
No 50
>KOG4471|consensus
Probab=96.63 E-value=0.0043 Score=50.23 Aligned_cols=28 Identities=25% Similarity=0.467 Sum_probs=21.9
Q ss_pred HHHhCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 94 NCRQKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 94 ~~~~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.....+.+|||||+-|.+||+.++++-.
T Consensus 369 kVe~~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 369 KVESESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred HHhcCCceEEEEcCCCccchHHHHHHHH
Confidence 3334568999999999999998876543
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.039 Score=34.68 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
......+...+-..+++++... +......++- ..++|+.+..... .... ...+.+++|+|..|. ||.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e~~~~~i~~~-~~~ip~~~~~~~~--~~~~--------~~~~~~ivv~C~~G~-rS~ 75 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-EYERGHIPGA-AINIPLSELKAAE--NLLE--------LPDDDPIVVYCASGV-RSA 75 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-HhhhcCCCcc-eeeeecccchhhh--cccc--------cCCCCeEEEEeCCCC-ChH
Confidence 3444556666778899999986 3222222221 5556654432110 0000 456689999999994 886
Q ss_pred HHHHHHHHHHcCCCH
Q psy15044 115 VMAACYLVYFLGMTP 129 (154)
Q Consensus 115 ~~~a~~l~~~~g~~~ 129 (154)
.++.+|.. .|++.
T Consensus 76 -~aa~~L~~-~G~~~ 88 (110)
T COG0607 76 -AAAAALKL-AGFTN 88 (110)
T ss_pred -HHHHHHHH-cCCcc
Confidence 55666644 66543
No 52
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=95.75 E-value=0.049 Score=34.21 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCC----CCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEY----HAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~----~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
++++..+...+=..|||+++.. +-.....+|- +++|+... .......+.............+..|+++|..|.
T Consensus 2 ~~el~~~l~~~~~~liD~R~~~-~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~ 78 (113)
T PF00581_consen 2 PEELKEMLENESVLLIDVRSPE-EYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW 78 (113)
T ss_dssp HHHHHHHHTTTTEEEEEESSHH-HHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC
T ss_pred HHHHHhhhhCCCeEEEEeCCHH-HHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 3455554455677899999876 2112222333 55666332 222233344444444443455678999997774
Q ss_pred ChHHHHHHH---HHHHHcCCC
Q psy15044 111 GRTGVMAAC---YLVYFLGMT 128 (154)
Q Consensus 111 ~Rsg~~~a~---~l~~~~g~~ 128 (154)
|++..+++ +.+...|++
T Consensus 79 -~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 79 -RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp -HHHHHHHHHHHHHHHHTTTS
T ss_pred -ccchhHHHHHHHHHHHcCCC
Confidence 67665554 223434653
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=95.55 E-value=0.042 Score=42.53 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=20.1
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHH
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVY 123 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~ 123 (154)
.+|.+|+|||..|.+||+.++++..+.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 467899999999999998877655433
No 54
>PRK01415 hypothetical protein; Validated
Probab=95.55 E-value=0.15 Score=37.59 Aligned_cols=80 Identities=11% Similarity=0.234 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHH--HHhCCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVN--CRQKGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~--~~~~~~~vlVHC~~G~~R 112 (154)
+.++..+.+..=..|||+++.. +......+|. ..++...+.++-.++.. ....+.+|+++|.+|. |
T Consensus 116 p~e~~~ll~~~~~vvIDVRn~~-E~~~Ghi~gA----------inip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-R 183 (247)
T PRK01415 116 PKDWDEFITKQDVIVIDTRNDY-EVEVGTFKSA----------INPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-R 183 (247)
T ss_pred HHHHHHHHhCCCcEEEECCCHH-HHhcCCcCCC----------CCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-H
Confidence 4556555555456799999987 3322222221 11222233333322221 1245679999999995 8
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15044 113 TGVMAACYLVYFLGMT 128 (154)
Q Consensus 113 sg~~~a~~l~~~~g~~ 128 (154)
|. .++.+|.. .|++
T Consensus 184 s~-kAa~~L~~-~Gf~ 197 (247)
T PRK01415 184 CE-KSTSLLKS-IGYD 197 (247)
T ss_pred HH-HHHHHHHH-cCCC
Confidence 86 55666644 7774
No 55
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=95.54 E-value=0.15 Score=33.43 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred HhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 96 RQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 96 ~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..++.+|+|.|..|-.||...+ +++...|.+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 3456799999975435776433 555656763
No 56
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=95.26 E-value=0.23 Score=30.80 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=20.0
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..| .||. .++..| ...|++
T Consensus 59 ~~~~~ivv~C~~G-~rs~-~aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQ-FVAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCC-CcHH-HHHHHH-HHcCce
Confidence 4567999999999 4886 444444 346764
No 57
>KOG1089|consensus
Probab=95.09 E-value=0.065 Score=43.67 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=20.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHH
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLV 122 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~ 122 (154)
+|-+|||||+-|.+||..++.+.-+
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLaQl 367 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLAQL 367 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHHHH
Confidence 5689999999999999987776543
No 58
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=95.06 E-value=0.22 Score=32.02 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=19.6
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..| ++++..++..| ...|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 3457999999997 44544555444 446764
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=94.97 E-value=0.21 Score=38.05 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH--hCCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR--QKGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~--~~~~~vlVHC~~G~~R 112 (154)
..++..+.+.+=..|||+++.. +-.....+|. +++|+. .+.++...+.... ..+.+|+|+|.+| .|
T Consensus 116 ~~el~~~l~~~~~vlIDVR~~~-E~~~GhI~GA--i~ip~~--------~~~~~~~~l~~~~~~~kdk~IvvyC~~G-~R 183 (314)
T PRK00142 116 PKEVNELLDDPDVVFIDMRNDY-EYEIGHFENA--IEPDIE--------TFREFPPWVEENLDPLKDKKVVMYCTGG-IR 183 (314)
T ss_pred HHHHHHHhcCCCeEEEECCCHH-HHhcCcCCCC--EeCCHH--------HhhhhHHHHHHhcCCCCcCeEEEECCCC-cH
Confidence 4555444333335799999876 3222222231 223332 2332333332221 2457999999999 48
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15044 113 TGVMAACYLVYFLGMT 128 (154)
Q Consensus 113 sg~~~a~~l~~~~g~~ 128 (154)
|. .++.+|.. .|++
T Consensus 184 s~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 184 CE-KASAWMKH-EGFK 197 (314)
T ss_pred HH-HHHHHHHH-cCCC
Confidence 86 55666644 7774
No 60
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=94.77 E-value=0.82 Score=31.36 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=19.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.+.+|++.|..|..||.. +++++...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 557999999998767764 33443446664
No 61
>PRK05320 rhodanese superfamily protein; Provisional
Probab=94.40 E-value=0.31 Score=36.11 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHHHCC------CcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH--hCCCcEEEeC
Q psy15044 35 RDHLKTLSYRG------VCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR--QKGEAVGVHC 106 (154)
Q Consensus 35 ~~~~~~l~~~g------i~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~--~~~~~vlVHC 106 (154)
..++..+.+.+ -..|||+++.. +-.....+| -+++|+ ..+..+...+.... ..+.+|+++|
T Consensus 114 ~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~~Ghi~G--AiniPl--------~~f~~~~~~l~~~~~~~kdk~IvvyC 182 (257)
T PRK05320 114 AATLKRWLDQGHDDAGRPVVMLDTRNAF-EVDVGTFDG--ALDYRI--------DKFTEFPEALAAHRADLAGKTVVSFC 182 (257)
T ss_pred HHHHHHHHhccccccCCCeEEEECCCHH-HHccCccCC--CEeCCh--------hHhhhhHHHHHhhhhhcCCCeEEEEC
Confidence 45555544443 24689999987 322222222 223333 22222322222221 1457999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCC
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..|. ||. .++.+|.. .|++
T Consensus 183 ~~G~-Rs~-~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 183 TGGI-RCE-KAAIHMQE-VGID 201 (257)
T ss_pred CCCH-HHH-HHHHHHHH-cCCc
Confidence 9994 886 55666644 6764
No 62
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=94.28 E-value=0.61 Score=29.96 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=42.1
Q ss_pred HHHHHHHHC-CCcEEEEcCCCCcCCC-cccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 36 DHLKTLSYR-GVCHLVSLSEECIPDG-IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 36 ~~~~~l~~~-gi~~Vv~l~~~~~~~~-~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
+++..+.+. .=..|||+++.. +-. ....++ -+++|+.+....... ..+...+......+.+|+|+|..| .||
T Consensus 4 ~el~~~l~~~~~~~vIDvR~~~-e~~~~ghIpg--A~~ip~~~~~~~~~~--~~~~~~l~~~~~~~~~ivv~C~~G-~rs 77 (117)
T cd01522 4 AEAWALLQADPQAVLVDVRTEA-EWKFVGGVPD--AVHVAWQVYPDMEIN--PNFLAELEEKVGKDRPVLLLCRSG-NRS 77 (117)
T ss_pred HHHHHHHHhCCCeEEEECCCHH-HHhcccCCCC--ceecchhhccccccC--HHHHHHHHhhCCCCCeEEEEcCCC-ccH
Confidence 344444333 346699999876 322 222333 234444332111100 112223332224567899999998 478
Q ss_pred HHHHHHHHHHHcCCC
Q psy15044 114 GVMAACYLVYFLGMT 128 (154)
Q Consensus 114 g~~~a~~l~~~~g~~ 128 (154)
... +..| ...|.+
T Consensus 78 ~~a-a~~L-~~~G~~ 90 (117)
T cd01522 78 IAA-AEAA-AQAGFT 90 (117)
T ss_pred HHH-HHHH-HHCCCC
Confidence 643 4444 346653
No 63
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=94.26 E-value=0.24 Score=30.96 Aligned_cols=84 Identities=20% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHH-CCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCC---CCCHHHHHHHHHHHHHH-HhCCCcEEEeCCCCC
Q psy15044 36 DHLKTLSY-RGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYH---APTMRQVIKFIEFCVNC-RQKGEAVGVHCRSGR 110 (154)
Q Consensus 36 ~~~~~l~~-~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~---~p~~~~~~~~~~~i~~~-~~~~~~vlVHC~~G~ 110 (154)
+++..+.+ .+=..|||++... +-.....++- +++|+.+.. .++.+.+.+ .+... ...+.+|+|+|..|.
T Consensus 4 ~~~~~~l~~~~~~~iiDvR~~~-e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ivv~c~~g~ 77 (106)
T cd01519 4 EEVKNLPNPHPNKVLIDVREPE-ELKTGKIPGA--INIPLSSLPDALALSEEEFEK---KYGFPKPSKDKELIFYCKAGV 77 (106)
T ss_pred HHHHHhcCCCCCEEEEECCCHH-HHhcCcCCCc--EEechHHhhhhhCCCHHHHHH---HhcccCCCCCCeEEEECCCcH
Confidence 34444433 3336799999875 2222223332 334443321 112222322 22222 134579999999985
Q ss_pred ChHHHHHHHHHHHHcCCC
Q psy15044 111 GRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 111 ~Rsg~~~a~~l~~~~g~~ 128 (154)
||. .++..| ...|.+
T Consensus 78 -~s~-~~~~~l-~~~G~~ 92 (106)
T cd01519 78 -RSK-AAAELA-RSLGYE 92 (106)
T ss_pred -HHH-HHHHHH-HHcCCc
Confidence 765 334443 556763
No 64
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=94.23 E-value=0.46 Score=29.97 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHHHCC-CcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH-hCCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRG-VCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR-QKGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~g-i~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~R 112 (154)
.+++..+.+.+ -..+||+++.. +-.....+| -+++|+ ..+. ..+.... ..+.+|+|+|..|. |
T Consensus 14 ~~~l~~~~~~~~~~~liDvR~~~-e~~~ghIpg--ainip~--------~~l~---~~~~~l~~~~~~~ivv~C~~G~-r 78 (109)
T cd01533 14 ADELAALQARGAPLVVLDGRRFD-EYRKMTIPG--SVSCPG--------AELV---LRVGELAPDPRTPIVVNCAGRT-R 78 (109)
T ss_pred HHHHHHHHhcCCCcEEEeCCCHH-HHhcCcCCC--ceeCCH--------HHHH---HHHHhcCCCCCCeEEEECCCCc-h
Confidence 45555544444 34689999876 211111112 112222 2222 2233322 23579999999995 8
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15044 113 TGVMAACYLVYFLGMT 128 (154)
Q Consensus 113 sg~~~a~~l~~~~g~~ 128 (154)
|. .++..| ...|++
T Consensus 79 s~-~a~~~L-~~~G~~ 92 (109)
T cd01533 79 SI-IGAQSL-INAGLP 92 (109)
T ss_pred HH-HHHHHH-HHCCCC
Confidence 85 444444 447763
No 65
>KOG1530|consensus
Probab=94.22 E-value=0.19 Score=33.17 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhC-CCcEEEeCCCCCChH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQK-GEAVGVHCRSGRGRT 113 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs 113 (154)
-+..+.|.+.+-...||++.+. |-..... -.-+++|...........-.+|.+.+...... ...|+++|..|. ||
T Consensus 27 ~~qvk~L~~~~~~~llDVRepe-Efk~gh~--~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs 102 (136)
T KOG1530|consen 27 VEQVKNLLQHPDVVLLDVREPE-EFKQGHI--PASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV-RS 102 (136)
T ss_pred HHHHHHHhcCCCEEEEeecCHH-HhhccCC--cceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc-ch
Confidence 4667788888878899999887 3222111 24556665322111110123344444444333 348999999995 88
Q ss_pred HH
Q psy15044 114 GV 115 (154)
Q Consensus 114 g~ 115 (154)
..
T Consensus 103 ~~ 104 (136)
T KOG1530|consen 103 LK 104 (136)
T ss_pred hH
Confidence 64
No 66
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=93.05 E-value=0.71 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=19.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.+.++++.|..| .||. .++.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~-~~~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSM-QVAQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHH-HHHHHHHH-cCCc
Confidence 357999999998 5875 44555544 6764
No 67
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=91.15 E-value=2.1 Score=26.86 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
.+++..+.+.+-..|||++... +-.....+|- +++| ...+..++ .. ...+.+++|+|..|. ||.
T Consensus 9 ~~el~~~l~~~~~~ivDvR~~~-e~~~ghi~gA--~~ip--------~~~l~~~~---~~-~~~~~~ivv~c~~g~-~s~ 72 (108)
T PRK00162 9 VEQAHQKLQEGGAVLVDIRDPQ-SFAMGHAPGA--FHLT--------NDSLGAFM---RQ-ADFDTPVMVMCYHGN-SSQ 72 (108)
T ss_pred HHHHHHHHHcCCCEEEEcCCHH-HHhcCCCCCC--eECC--------HHHHHHHH---Hh-cCCCCCEEEEeCCCC-CHH
Confidence 4555444333335799999876 2111111221 2222 12233333 22 344578999999984 664
Q ss_pred HHHHHHHHHHcCCC
Q psy15044 115 VMAACYLVYFLGMT 128 (154)
Q Consensus 115 ~~~a~~l~~~~g~~ 128 (154)
.++..| +..|++
T Consensus 73 -~a~~~L-~~~G~~ 84 (108)
T PRK00162 73 -GAAQYL-LQQGFD 84 (108)
T ss_pred -HHHHHH-HHCCch
Confidence 444444 446664
No 68
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=90.42 E-value=1.4 Score=28.38 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..+.+++|+|..|. ||. .++..| ...|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~-~aa~~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQ-TAVRKL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHH-HHHHHH-HHcCC
Confidence 34579999999994 876 444444 44677
No 69
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=90.37 E-value=2.5 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=18.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
+.+|+++|..|. ||. .++.+| ...|++
T Consensus 56 ~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 56 GARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 568999999984 776 444455 446764
No 70
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.20 E-value=1.7 Score=34.00 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCC-CeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEP-LNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~-~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
.+++..+.+.+=..+||++++. +-.....++ ..-+++|..+.... ......+.. ... .+|+|||..| .||
T Consensus 275 ~~el~~~l~~~~~~lIDVR~~~-E~~~ghI~~~~gAinIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~sG-~RS 345 (370)
T PRK05600 275 TTSLIDATLNGSATLLDVREPH-EVLLKDLPEGGASLKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCASG-IRS 345 (370)
T ss_pred HHHHHHHHhcCCeEEEECCCHH-HhhhccCCCCCccEeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCCC-hhH
Confidence 3444444334423689999987 322222221 12445554332110 001111111 122 3899999999 588
Q ss_pred HHHHHHHHHHHcCCC
Q psy15044 114 GVMAACYLVYFLGMT 128 (154)
Q Consensus 114 g~~~a~~l~~~~g~~ 128 (154)
. .++..|.. .|++
T Consensus 346 ~-~Aa~~L~~-~G~~ 358 (370)
T PRK05600 346 A-DFIEKYSH-LGHE 358 (370)
T ss_pred H-HHHHHHHH-cCCC
Confidence 7 45555543 6763
No 71
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=90.04 E-value=2.9 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=19.1
Q ss_pred HhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 96 RQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 96 ~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
...+.+++|+|..| .||. .++..| ...|.+
T Consensus 53 ~~~~~~ivv~c~~g-~~s~-~a~~~l-~~~G~~ 82 (96)
T cd01444 53 LDRDRPVVVYCYHG-NSSA-QLAQAL-REAGFT 82 (96)
T ss_pred cCCCCCEEEEeCCC-ChHH-HHHHHH-HHcCCc
Confidence 34568999999977 4665 444444 346653
No 72
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=89.82 E-value=1.3 Score=27.21 Aligned_cols=75 Identities=25% Similarity=0.184 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
.+++..+.+.+ ..|||+++.. +-.....+| -+++|..+.. ... .....+.+|+++|..|. ||.
T Consensus 6 ~~el~~~~~~~-~~liDvR~~~-e~~~~hi~g--a~~ip~~~~~--------~~~----~~~~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 6 PNDACELLAQG-AVLVDIREPD-EYLRERIPG--ARLVPLSQLE--------SEG----LPLVGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred HHHHHHHHHCC-CEEEECCCHH-HHHhCcCCC--CEECChhHhc--------ccc----cCCCCCCcEEEEeCCCc-hHH
Confidence 45565555556 6899999876 211111222 2234432211 100 01344579999999984 665
Q ss_pred HHHHHHHHHHcCCC
Q psy15044 115 VMAACYLVYFLGMT 128 (154)
Q Consensus 115 ~~~a~~l~~~~g~~ 128 (154)
.++..|.. .|..
T Consensus 69 -~~~~~L~~-~g~~ 80 (99)
T cd01527 69 -QNAERLAA-ISAG 80 (99)
T ss_pred -HHHHHHHH-cCCc
Confidence 34444433 4553
No 73
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=89.62 E-value=1.5 Score=26.28 Aligned_cols=29 Identities=45% Similarity=0.599 Sum_probs=17.7
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..| .|+. .++.+| ...|.+
T Consensus 54 ~~~~~iv~~c~~g-~~a~-~~~~~l-~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSG-NRSA-KAAWLL-RELGFK 82 (100)
T ss_pred CCCCeEEEEeCCC-cHHH-HHHHHH-HHcCCC
Confidence 3457899999666 4664 333333 446664
No 74
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=89.01 E-value=4.1 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQ--KGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~R 112 (154)
++++..+-...=..||+.++.. +-.... + .+-..|....|.++..++.+... .+++|+.-|.+|+ |
T Consensus 117 p~~wn~~l~D~~~vviDtRN~Y-E~~iG~--------F--~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-R 184 (308)
T COG1054 117 PKDWNELLSDPDVVVIDTRNDY-EVAIGH--------F--EGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-R 184 (308)
T ss_pred HHHHHHHhcCCCeEEEEcCcce-eEeeee--------e--cCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-e
Confidence 3444444333336677777765 322211 1 12234666778888888876543 4579999999998 8
Q ss_pred HHHHHHHHHHHHcCC
Q psy15044 113 TGVMAACYLVYFLGM 127 (154)
Q Consensus 113 sg~~~a~~l~~~~g~ 127 (154)
.= -+.+|+. ..|+
T Consensus 185 CE-Kas~~m~-~~GF 197 (308)
T COG1054 185 CE-KASAWMK-ENGF 197 (308)
T ss_pred eh-hhHHHHH-Hhcc
Confidence 75 4455553 3666
No 75
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=87.90 E-value=3.7 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=18.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.+.+|+++|..|. ||..+ + +.+...|.+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~-~-~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL-L-LALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHHH-H-HHHHHcCCC
Confidence 4579999999874 77543 3 333556763
No 76
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=87.61 E-value=3.3 Score=32.08 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=19.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.+.+|+|+|..|-.||+.+ +.+| ...|++
T Consensus 87 ~~~~ivvyC~rgG~RS~~a-a~~L-~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSV-QQWL-KEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHH-HHHH-HHcCCC
Confidence 5678999997554698854 3333 346653
No 77
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=87.42 E-value=2.9 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=17.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
+.+|+++|..|. ||..+ +..| ...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~-a~~L-~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF-AAFL-VKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH-HHHH-HHcCCC
Confidence 468999999985 77644 3334 446663
No 78
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=87.17 E-value=2.4 Score=26.66 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH-hCCCcEEEeCCCCCChHHHHHH
Q psy15044 40 TLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR-QKGEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 40 ~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~a 118 (154)
.|.-..-..+||+++.. +-.....+|- +++|. ..+... +.... ..+.+|+|+|..| .||... +
T Consensus 12 ~~~~~~~~~lIDvR~~~-ef~~ghIpgA--inip~--------~~l~~~---l~~~~~~~~~~vvlyC~~G-~rS~~a-a 75 (101)
T TIGR02981 12 ALPLFAAEHWIDVRIPE-QYQQEHIQGA--INIPL--------KEIKEH---IATAVPDKNDTVKLYCNAG-RQSGMA-K 75 (101)
T ss_pred hhhhccCCEEEECCCHH-HHhcCCCCCC--EECCH--------HHHHHH---HHHhCCCCCCeEEEEeCCC-HHHHHH-H
Confidence 34444667799999876 2111111221 22332 222222 22221 2346899999999 477644 4
Q ss_pred HHHHHHcCCC
Q psy15044 119 CYLVYFLGMT 128 (154)
Q Consensus 119 ~~l~~~~g~~ 128 (154)
..| ...|.+
T Consensus 76 ~~L-~~~G~~ 84 (101)
T TIGR02981 76 DIL-LDMGYT 84 (101)
T ss_pred HHH-HHcCCC
Confidence 444 346663
No 79
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=86.49 E-value=1.9 Score=27.24 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=17.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.+.+++++|..| .||... +..|. ..|.+
T Consensus 59 ~~~~IVlyC~~G-~rS~~a-a~~L~-~~G~~ 86 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA-KEILS-EMGYT 86 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH-HHHHH-HcCCC
Confidence 346799999988 477644 44443 35653
No 80
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=86.24 E-value=5.4 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=17.1
Q ss_pred hCCCcEEEeCC-CCCChHHHHHHHHHHH
Q psy15044 97 QKGEAVGVHCR-SGRGRTGVMAACYLVY 123 (154)
Q Consensus 97 ~~~~~vlVHC~-~G~~Rsg~~~a~~l~~ 123 (154)
....+|+|||. +| .||+ .++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~-~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGP-RMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHH-HHHHHHHH
Confidence 34578999997 66 5886 45555544
No 81
>PRK07411 hypothetical protein; Validated
Probab=85.37 E-value=3.7 Score=32.33 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=42.0
Q ss_pred HHHHHHHHHCC--CcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCh
Q psy15044 35 RDHLKTLSYRG--VCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGR 112 (154)
Q Consensus 35 ~~~~~~l~~~g--i~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 112 (154)
.+++..+.+.+ -..+||+++.. +......+| -+++|+.+..... ..+.+... .++.+|+|+|..|. |
T Consensus 286 ~~el~~~l~~~~~~~vlIDVR~~~-E~~~ghIpG--AiniP~~~l~~~~------~~~~l~~l-~~d~~IVvyC~~G~-R 354 (390)
T PRK07411 286 VTELKALLDSGADDFVLIDVRNPN-EYEIARIPG--SVLVPLPDIENGP------GVEKVKEL-LNGHRLIAHCKMGG-R 354 (390)
T ss_pred HHHHHHHHhCCCCCeEEEECCCHH-HhccCcCCC--CEEccHHHhhccc------chHHHhhc-CCCCeEEEECCCCH-H
Confidence 45555544444 23689999876 322222233 2345554321110 01112222 24579999999885 8
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15044 113 TGVMAACYLVYFLGMT 128 (154)
Q Consensus 113 sg~~~a~~l~~~~g~~ 128 (154)
|. .++..| ...|++
T Consensus 355 S~-~aa~~L-~~~G~~ 368 (390)
T PRK07411 355 SA-KALGIL-KEAGIE 368 (390)
T ss_pred HH-HHHHHH-HHcCCC
Confidence 86 455555 457775
No 82
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=83.83 E-value=8.4 Score=24.16 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=19.1
Q ss_pred hCCCcEEEeCCCCCC-hHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRG-RTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~-Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..|.. ||. .++..| ...|.+
T Consensus 62 ~~~~~vvvyc~~g~~~~s~-~~a~~l-~~~G~~ 92 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGAT-KAALKL-AELGFP 92 (110)
T ss_pred CCCCeEEEEECCCCCchHH-HHHHHH-HHcCCe
Confidence 456899999998853 554 444333 446763
No 83
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=82.89 E-value=2.7 Score=34.06 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.7
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..+.+++++|..|. ||. .++.+|. ..|+
T Consensus 447 ~~~~~iivyC~~G~-rS~-~aa~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSR-LQALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHH-HHHHHHH-HcCC
Confidence 45579999999995 886 5555553 3665
No 84
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=82.35 E-value=6.1 Score=30.19 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=16.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..|+|+|..|-.||..+ +.+| ...|+
T Consensus 75 ~~vvvyC~~gG~RS~~a-a~~L-~~~G~ 100 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSL-AWLL-AQIGF 100 (311)
T ss_pred CcEEEEECCCChHHHHH-HHHH-HHcCC
Confidence 34999997544688744 4444 44676
No 85
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=80.74 E-value=3.8 Score=24.87 Aligned_cols=29 Identities=28% Similarity=0.142 Sum_probs=18.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
+.+|+|.|..|...++..++..| ...|.+
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L-~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRL-SELGYT 78 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHH-HHcCcc
Confidence 57999999998533344544444 445653
No 86
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.39 E-value=3.4 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=19.5
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..| +||.. ++.+| ...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 4457899999987 57764 44455 446763
No 87
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.11 E-value=12 Score=29.29 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH-hCCCcEEEeCCCCCChH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR-QKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rs 113 (154)
.+++..+.+.+ ..|||+++.. +-.....+|- +++|. ..+.. .+.... ..+.+|+|+|..| .||
T Consensus 7 ~~el~~~l~~~-~~ivDvR~~~-e~~~ghIpgA--i~ip~--------~~l~~---~~~~~~~~~~~~IvvyC~~G-~rs 70 (376)
T PRK08762 7 PAEARARAAQG-AVLIDVREAH-ERASGQAEGA--LRIPR--------GFLEL---RIETHLPDRDREIVLICASG-TRS 70 (376)
T ss_pred HHHHHHHHhCC-CEEEECCCHH-HHhCCcCCCC--EECCH--------HHHHH---HHhhhcCCCCCeEEEEcCCC-cHH
Confidence 45555555556 5799999875 2111112221 22232 22222 222222 4567999999988 477
Q ss_pred HHHHHHHHHHHcCC
Q psy15044 114 GVMAACYLVYFLGM 127 (154)
Q Consensus 114 g~~~a~~l~~~~g~ 127 (154)
. .++..| ...|.
T Consensus 71 ~-~aa~~L-~~~G~ 82 (376)
T PRK08762 71 A-HAAATL-RELGY 82 (376)
T ss_pred H-HHHHHH-HHcCC
Confidence 5 344444 44565
No 88
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=78.19 E-value=4 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 116 MAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 116 ~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
-+...||...|++.++|++.++.
T Consensus 17 ~AkgiLm~~~g~~e~~A~~~Lr~ 39 (56)
T PF03861_consen 17 QAKGILMARYGLSEDEAYRLLRR 39 (56)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHH
Confidence 44567888899999999999975
No 89
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=77.87 E-value=12 Score=22.33 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
+++++.+.+.+. .|||+++.. +-.....+| -+++|. +.+...+. ....+.++++.|..|. |+.
T Consensus 3 ~~e~~~~~~~~~-~iiD~R~~~-~~~~~hipg--A~~ip~--------~~~~~~~~----~~~~~~~vvl~c~~g~-~a~ 65 (90)
T cd01524 3 WHELDNYRADGV-TLIDVRTPQ-EFEKGHIKG--AINIPL--------DELRDRLN----ELPKDKEIIVYCAVGL-RGY 65 (90)
T ss_pred HHHHHHHhcCCC-EEEECCCHH-HHhcCCCCC--CEeCCH--------HHHHHHHH----hcCCCCcEEEEcCCCh-hHH
Confidence 455666655554 589999775 211111122 122332 22322222 1345579999999873 554
Q ss_pred HHHHHHHHHHcCC
Q psy15044 115 VMAACYLVYFLGM 127 (154)
Q Consensus 115 ~~~a~~l~~~~g~ 127 (154)
.++..| ...|.
T Consensus 66 -~~a~~L-~~~G~ 76 (90)
T cd01524 66 -IAARIL-TQNGF 76 (90)
T ss_pred -HHHHHH-HHCCC
Confidence 444444 34565
No 90
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=76.98 E-value=27 Score=29.36 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=18.7
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+++|..|. ||+.+ + +.+...|.+
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~-~-~~L~~lG~~ 249 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFT-Y-LVAKALGYP 249 (610)
T ss_pred CCCCCEEEECCCCh-HHHHH-H-HHHHHcCCC
Confidence 44579999999985 66533 3 333456663
No 91
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=76.08 E-value=17 Score=22.87 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.8
Q ss_pred CCcEEEeCCCCCChHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~ 116 (154)
+.+++++|..+-.|+...
T Consensus 62 ~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 62 KDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCeEEEEeecCCcchHHH
Confidence 468999998444577643
No 92
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=75.87 E-value=3.5 Score=30.62 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAITT 135 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~ 135 (154)
..|.+|||+.+++-+. .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 5799999988887763 69999999763
No 93
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=75.76 E-value=7.8 Score=29.24 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=15.1
Q ss_pred cEEEeCCCCCChHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a 118 (154)
.|-|=|.+|..||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 488999999999986653
No 94
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=75.33 E-value=7 Score=29.22 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH----hCCC---cEEEeCCCCCChHHHHHH
Q psy15044 85 VIKFIEFCVNCR----QKGE---AVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 85 ~~~~~~~i~~~~----~~~~---~vlVHC~~G~~Rsg~~~a 118 (154)
+.++.+++..++ ++|. .|-|=|.+|..||.+++=
T Consensus 222 ~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 222 YEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred HHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHH
Confidence 444445544443 3443 388899999999987763
No 95
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=73.61 E-value=17 Score=27.08 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=17.7
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
.++.+|+|+|..|. ++++.+ .+++...|..
T Consensus 85 ~~d~~VVvyc~~~~-~~a~~~-~~~l~~~G~~ 114 (281)
T PRK11493 85 NQDKHLVVYDEGNL-FSAPRA-WWMLRTFGVE 114 (281)
T ss_pred CCCCEEEEECCCCC-chHHHH-HHHHHHhcCC
Confidence 44579999998764 444333 3333446654
No 96
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=73.36 E-value=15 Score=28.04 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred HHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHH
Q psy15044 94 NCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERA 132 (154)
Q Consensus 94 ~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a 132 (154)
...+.|-||.+||..|. |.|.=.+-+| ...|++++..
T Consensus 150 A~~~TG~pI~~H~~~g~-~~~~e~~~il-~e~Gv~~~rv 186 (308)
T PF02126_consen 150 AHKETGAPISTHTGRGT-RMGLEQLDIL-EEEGVDPSRV 186 (308)
T ss_dssp HHHHHT-EEEEEESTTG-TCHHHHHHHH-HHTT--GGGE
T ss_pred HHHHhCCeEEEcCCCCC-cCHHHHHHHH-HHcCCChhHe
Confidence 33456889999998874 4564545554 4577765543
No 97
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=72.78 E-value=1.7 Score=27.21 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.8
Q ss_pred CcEEEeCCCC
Q psy15044 100 EAVGVHCRSG 109 (154)
Q Consensus 100 ~~vlVHC~~G 109 (154)
..+||||+-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5799999987
No 98
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=72.53 E-value=22 Score=29.92 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=43.8
Q ss_pred CHHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecC-------CCCCCCHHHHHHHHHHHHHHHhCCCcEEEeC
Q psy15044 34 TRDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVE-------EYHAPTMRQVIKFIEFCVNCRQKGEAVGVHC 106 (154)
Q Consensus 34 ~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~-------d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC 106 (154)
+.+++..+.+.+=-.|||++... +-.....+|-.++.+... ....|+.+.+.+.+..+. ..++.+|+|.|
T Consensus 12 s~~eL~~~l~~~~vvIIDvR~~~-eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG--I~~d~~VVvYd 88 (610)
T PRK09629 12 EPNDLLERLDAPELILVDLTSSA-RYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG--HNPDAVYVVYD 88 (610)
T ss_pred cHHHHHHHhcCCCEEEEECCChH-HHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC--CCCCCEEEEEC
Confidence 35555555444334689998754 211122334333322110 112344444554443322 24457899999
Q ss_pred CCCCChHHHHHHHHHHHHcCC
Q psy15044 107 RSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..|..+++ -+ +|.+...|.
T Consensus 89 ~~g~~~A~-R~-~w~L~~~G~ 107 (610)
T PRK09629 89 DEGGGWAG-RF-IWLLDVIGH 107 (610)
T ss_pred CCCCchHH-HH-HHHHHHcCC
Confidence 98865554 22 344454654
No 99
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=72.48 E-value=4.4 Score=30.46 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
..|.+|||+.+++-++ .|++.++|.+
T Consensus 165 iPGiSRSG~TI~a~l~--~G~~r~~Aa~ 190 (276)
T PRK12554 165 IPGVSRSGATIIAGLL--LGLTREAAAR 190 (276)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHH
Confidence 4799999988777663 5999999976
No 100
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=71.64 E-value=4.8 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
..|.+|||+.+++-+. .|++.++|.+
T Consensus 159 iPGiSRSG~TI~a~l~--~G~~r~~Aa~ 184 (255)
T TIGR00753 159 IPGVSRSGSTISGGLF--IGLNRKAAAE 184 (255)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHH
Confidence 4799999988877663 6999999976
No 101
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=71.57 E-value=15 Score=26.26 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.5
Q ss_pred HhCCCcEEEeCCCCCChHHHHHHHHHHHHc
Q psy15044 96 RQKGEAVGVHCRSGRGRTGVMAACYLVYFL 125 (154)
Q Consensus 96 ~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~ 125 (154)
....++|+|- |.||||.++-.+.|...
T Consensus 36 ~~~~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 36 LECKGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred HhcCCcEEEE---cCChhHHHHHHHHHHHH
Confidence 3445788885 89999988877666543
No 102
>smart00400 ZnF_CHCC zinc finger.
Probab=71.07 E-value=6.1 Score=21.70 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=22.7
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy15044 102 VGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTL 136 (154)
Q Consensus 102 vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~ 136 (154)
=..||.+ -++.|-++.. ++...|++..+|++.+
T Consensus 22 n~~~Cf~-cg~gGd~i~f-v~~~~~~sf~eA~~~L 54 (55)
T smart00400 22 QFFHCFG-CGAGGNVISF-LMKYDKLSFVEAVKKL 54 (55)
T ss_pred CEEEEeC-CCCCCCHHHH-HHHHHCcCHHHHHHHh
Confidence 3578885 3566655444 4455899999999875
No 103
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=70.95 E-value=5 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
..|.+|||+.+++-+. .|++.++|.+
T Consensus 163 iPGiSRSG~TI~~~l~--~G~~r~~Aa~ 188 (268)
T PRK00281 163 IPGTSRSGATISGGLL--LGLSREAAAE 188 (268)
T ss_pred CCCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 4799999988877663 6999999976
No 104
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=70.76 E-value=19 Score=28.35 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCC-cEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 35 RDHLKTLSYRGV-CHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 35 ~~~~~~l~~~gi-~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
.+++..+.+.+- -.|||+++.. +-.....+|- +++|+.+... . ..+.. ...+.+++|+|..| .||
T Consensus 291 ~~el~~~l~~~~~~~lIDvR~~~-ef~~ghIpGA--inip~~~l~~--~-------~~~~~-l~~d~~iVvyC~~G-~rS 356 (392)
T PRK07878 291 PRELKEWLDSGKKIALIDVREPV-EWDIVHIPGA--QLIPKSEILS--G-------EALAK-LPQDRTIVLYCKTG-VRS 356 (392)
T ss_pred HHHHHHHHhCCCCeEEEECCCHH-HHhcCCCCCC--EEcChHHhcc--h-------hHHhh-CCCCCcEEEEcCCC-hHH
Confidence 455555555443 3689999876 3222222232 2344432210 0 01111 24567999999998 477
Q ss_pred HHHHHHHHHHHcCCC
Q psy15044 114 GVMAACYLVYFLGMT 128 (154)
Q Consensus 114 g~~~a~~l~~~~g~~ 128 (154)
. .++..| ...|++
T Consensus 357 ~-~aa~~L-~~~G~~ 369 (392)
T PRK07878 357 A-EALAAL-KKAGFS 369 (392)
T ss_pred H-HHHHHH-HHcCCC
Confidence 5 445444 446764
No 105
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=68.96 E-value=8 Score=23.59 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|+|..| .||. .++..| ...|.+
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~~~~~l-~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-LAGKTL-QDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-HHHHHH-HHcChH
Confidence 4567999999988 5774 444433 446653
No 106
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=68.95 E-value=26 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=13.3
Q ss_pred CCcEEEeCCCCCChHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~ 116 (154)
..+|++||..|-.||...
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 368999999865677643
No 107
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=68.72 E-value=14 Score=27.97 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=14.8
Q ss_pred cEEEeCCCCCChHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a 118 (154)
.|-|=|.+|..||.+++=
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 388999999999986653
No 108
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=67.79 E-value=42 Score=25.02 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=18.8
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+++|..|. |++ .++.+| ...|..
T Consensus 229 ~~~~~ii~yC~~G~-~A~-~~~~~l-~~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAA-VVVLAL-ATLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HHH-HHHHHH-HHcCCC
Confidence 44578999999985 554 444444 346764
No 109
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=63.76 E-value=64 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=17.7
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..+.+|+++|..|. |++ +++..| ...|.
T Consensus 267 ~~~~~iv~yC~sG~-~A~-~~~~~L-~~~G~ 294 (320)
T PLN02723 267 SLDSPIVASCGTGV-TAC-ILALGL-HRLGK 294 (320)
T ss_pred CCCCCEEEECCcHH-HHH-HHHHHH-HHcCC
Confidence 44579999998875 554 433333 34665
No 110
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.15 E-value=15 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCC
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRG 111 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~ 111 (154)
.+++.+|.....+.+||++|=+.|..
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 45677888888888999999777753
No 111
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=61.01 E-value=7.7 Score=23.27 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=12.7
Q ss_pred cEEEeCCCCCChHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~ 119 (154)
+|++-|.+|.+-| ++++.
T Consensus 1 kIlvvC~~Gi~TS-~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTS-LMVAN 18 (90)
T ss_dssp EEEEEESSSSHHH-HHHHH
T ss_pred CEEEECCChHHHH-HHHHH
Confidence 4789999999744 45533
No 112
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=60.23 E-value=25 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=10.9
Q ss_pred hCCCcEEEeCCCCC
Q psy15044 97 QKGEAVGVHCRSGR 110 (154)
Q Consensus 97 ~~~~~vlVHC~~G~ 110 (154)
..|..||.||.+|.
T Consensus 165 ~dg~~ILThcnsg~ 178 (363)
T PRK05772 165 NDGDTVLTQCNAGG 178 (363)
T ss_pred CCCCEEEEecCCcc
Confidence 35678999998873
No 113
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=59.69 E-value=13 Score=23.11 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=22.9
Q ss_pred EEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q psy15044 103 GVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLA 139 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~ 139 (154)
..||.+ -|.+|-++.. ++...|++..+|++.+.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~-v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDF-VMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-HHHH-HHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhH-HHHHhCCCHHHHHHHHHHH
Confidence 688985 4778866554 4677899999999998654
No 114
>PRK09875 putative hydrolase; Provisional
Probab=59.65 E-value=75 Score=24.10 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEEC 56 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~ 56 (154)
.+++..+++.|+++||++++..
T Consensus 37 ~~el~~~~~~Gg~tiVd~T~~g 58 (292)
T PRK09875 37 CQEMNDLMTRGVRNVIEMTNRY 58 (292)
T ss_pred HHHHHHHHHhCCCeEEecCCCc
Confidence 3567888999999999999765
No 115
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=59.21 E-value=13 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q psy15044 118 ACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 118 a~~l~~~~g~~~~~a~~~~r~ 138 (154)
=..||..+|+|-++|++++|.
T Consensus 151 KglLM~~~g~sE~EAy~~lR~ 171 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRR 171 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 457889899999999999985
No 116
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=58.99 E-value=12 Score=22.48 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=14.3
Q ss_pred cEEEeCCCCCChHHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.|++.|.+|.|= +++++.-+
T Consensus 2 kilvvCg~G~gt-S~ml~~ki 21 (87)
T cd05567 2 KIVFACDAGMGS-SAMGASVL 21 (87)
T ss_pred EEEEECCCCccH-HHHHHHHH
Confidence 689999999984 45544433
No 117
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=58.44 E-value=13 Score=23.94 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=27.3
Q ss_pred eeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcCCCC
Q psy15044 18 FSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLSEEC 56 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~ 56 (154)
..|...-++.-+....+..+++.|++.||..|+--....
T Consensus 21 ~~w~~~pfl~~~f~I~s~~~I~~L~~~gi~~V~Id~~k~ 59 (128)
T PF11871_consen 21 RSWLEHPFLFQGFLIKSQADIEKLRRLGIQEVYIDPDKS 59 (128)
T ss_pred CCccCCCeeeeceeECCHHHHHHHHHCCCcEEEEECCCC
Confidence 346643334345555678999999999999988765554
No 118
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=56.69 E-value=57 Score=21.76 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=17.6
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
..+.+|+|+|..| .+|. .++..|.. .|.
T Consensus 47 ~~~~~vVv~c~~g-~~a~-~aa~~L~~-~G~ 74 (145)
T cd01535 47 PAAERYVLTCGSS-LLAR-FAAADLAA-LTV 74 (145)
T ss_pred CCCCCEEEEeCCC-hHHH-HHHHHHHH-cCC
Confidence 3457999999986 3554 55555533 444
No 119
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=56.50 E-value=15 Score=27.60 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=20.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
..|.+|||+.+.+-+. .|++.+.|.+
T Consensus 164 ~PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 164 IPGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred cCCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 4799999988777663 5999888865
No 120
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=56.36 E-value=31 Score=18.63 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 108 SGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 108 ~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
.|.+|.. +..|.-+...|++++.--..++..|
T Consensus 17 tgLd~et-L~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRET-LSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHHH-HHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 3899997 4444444559999986655666544
No 121
>PLN02449 ferrochelatase
Probab=55.96 E-value=35 Score=27.90 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHCCCcEEEEcCCCCcCC-------------CcccCCCC-eEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q psy15044 32 PDTRDHLKTLSYRGVCHLVSLSEECIPD-------------GIERYEPL-NWILIPVEEYHAPTMRQVIKFIEFCVNCRQ 97 (154)
Q Consensus 32 p~~~~~~~~l~~~gi~~Vv~l~~~~~~~-------------~~~~~~~~-~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~ 97 (154)
|.+.+.++.|.+.|++.|+-+....... ......|+ .|.++|..+. +...+..+.+.+.+.+.
T Consensus 338 P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~---~p~FI~~La~lV~~~l~ 414 (485)
T PLN02449 338 PYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGC---EPTFISDLADAVIEALP 414 (485)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCC---CHHHHHHHHHHHHHHhh
Confidence 4457888999999999998887665100 01223577 5888887554 33445555666666654
Q ss_pred C
Q psy15044 98 K 98 (154)
Q Consensus 98 ~ 98 (154)
.
T Consensus 415 ~ 415 (485)
T PLN02449 415 Y 415 (485)
T ss_pred c
Confidence 3
No 122
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=55.86 E-value=11 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=13.2
Q ss_pred CcEEEeCCCCCChHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMA 117 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~ 117 (154)
..|++-|.+|.+ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 579999999998 55444
No 123
>PHA03338 US22 family homolog; Provisional
Probab=55.27 E-value=14 Score=27.88 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=26.1
Q ss_pred EeCCCCCChHHHHHHHHH-HHHcCCCHHHHHHHHHHhCCCC
Q psy15044 104 VHCRSGRGRTGVMAACYL-VYFLGMTPERAITTLRLARPGS 143 (154)
Q Consensus 104 VHC~~G~~Rsg~~~a~~l-~~~~g~~~~~a~~~~r~~Rp~~ 143 (154)
+||.+|.+-||.+.-.+. +..++..++....++...+...
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe~ 201 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGES 201 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCce
Confidence 599999999997776554 3445655555555665544433
No 124
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=53.50 E-value=36 Score=26.43 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=13.3
Q ss_pred hCCCcEEEeCCCCCChH
Q psy15044 97 QKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rs 113 (154)
..|..||.||.+|.-+|
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 35678999999997654
No 125
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=52.33 E-value=30 Score=22.92 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G 109 (154)
...++.++.+..++|..|+|+|..-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4667788888889999999999643
No 126
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=52.11 E-value=40 Score=22.97 Aligned_cols=27 Identities=4% Similarity=-0.015 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G 109 (154)
..+.-++.++.+...+|..|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 345667888899999999999999654
No 127
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=51.83 E-value=41 Score=26.37 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=8.5
Q ss_pred cEEEeCCCCC
Q psy15044 101 AVGVHCRSGR 110 (154)
Q Consensus 101 ~vlVHC~~G~ 110 (154)
.||.||.+|.
T Consensus 162 ~ILTHcnaG~ 171 (356)
T PRK08334 162 NVLTHCNAGS 171 (356)
T ss_pred CEEEecCcch
Confidence 4999999875
No 128
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=51.00 E-value=64 Score=20.69 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHCCCcEEEEcCCCCcCC--Ccc--------cCCCCeEEEeec
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECIPD--GIE--------RYEPLNWILIPV 74 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~~~--~~~--------~~~~~~~~~~p~ 74 (154)
+-++.+++.||+.+||++...... ... ...||.|.+++-
T Consensus 4 ~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 4 RFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 345678999999999988764111 111 125899999874
No 129
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=50.44 E-value=44 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy15044 84 QVIKFIEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 84 ~~~~~~~~i~~~~~~~~~vlVHC~~G 109 (154)
...-++.++.+...+|..|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45667888888889999999999654
No 130
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=50.34 E-value=64 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
+.+.++.+.+.+.+.+++.|++- |.|+|+..+.-+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 44777778888888888888884 7778886654443
No 131
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=49.94 E-value=49 Score=25.62 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=10.4
Q ss_pred hCCC----cEEEeCCCC
Q psy15044 97 QKGE----AVGVHCRSG 109 (154)
Q Consensus 97 ~~~~----~vlVHC~~G 109 (154)
..|. .||.||.+|
T Consensus 141 ~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 141 KKGVAAPLRVLTHCNTG 157 (331)
T ss_pred cCCCCCCceEEeecCCc
Confidence 3466 799999987
No 132
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=49.72 E-value=73 Score=20.94 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=27.1
Q ss_pred eecCCCCCCCHHHHHHHHHH----HHHHHhCCC--cEEEeCCCCCChHHHHHHHHHHHHcC
Q psy15044 72 IPVEEYHAPTMRQVIKFIEF----CVNCRQKGE--AVGVHCRSGRGRTGVMAACYLVYFLG 126 (154)
Q Consensus 72 ~p~~d~~~p~~~~~~~~~~~----i~~~~~~~~--~vlVHC~~G~~Rsg~~~a~~l~~~~g 126 (154)
+|++|.. +.+....+.++ +.+..++++ .+++ |-+|--++-++.+++.+..+|
T Consensus 59 ~~~~DI~--t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~-~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 59 LKFDDIL--SDEDILTFMSIAAKEVKKERENYGCERIIV-NISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred cCccccC--CHHHHHHHHHHHHHHHHHHhhCCCcceEEE-EecCCHHHHHHHHHHHHHHhC
Confidence 4555544 33333344444 444444443 3444 556644677777777776666
No 133
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=49.55 E-value=45 Score=19.20 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=17.4
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLG 126 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g 126 (154)
..+.+|+|+|..| .|+. .++..| ...|
T Consensus 48 ~~~~~vv~~c~~~-~~a~-~~~~~l-~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSG-NRSA-RAAKLL-RKAG 74 (89)
T ss_pred CCCCeEEEEeCCC-chHH-HHHHHH-HHhC
Confidence 4557999999997 4554 444444 3355
No 134
>PRK13938 phosphoheptose isomerase; Provisional
Probab=49.34 E-value=74 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY 123 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~ 123 (154)
+.+.++.+.+.+.+.+++.|++- |.|+|+.++..+...
T Consensus 29 ~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 44666777777778888888874 677888666555443
No 135
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.94 E-value=58 Score=25.80 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=44.4
Q ss_pred HHHHHHHCC-CcEEEEcCCCCcCCCc----ccCCCCeE--EEeecCCCCCCCHHHHHHHHHHHHHHHhCCC--cEEEeCC
Q psy15044 37 HLKTLSYRG-VCHLVSLSEECIPDGI----ERYEPLNW--ILIPVEEYHAPTMRQVIKFIEFCVNCRQKGE--AVGVHCR 107 (154)
Q Consensus 37 ~~~~l~~~g-i~~Vv~l~~~~~~~~~----~~~~~~~~--~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~--~vlVHC~ 107 (154)
-+..+.+.+ +..+|..+...+.... ....++.. +.+.+.+.+....+..-.++..+...+.+-+ -|+||
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVh-- 99 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVH-- 99 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEe--
Confidence 346677775 9999999988732111 12223332 1122221122222335555555665554434 49999
Q ss_pred CCCChHHHHHHHHHHHHc
Q psy15044 108 SGRGRTGVMAACYLVYFL 125 (154)
Q Consensus 108 ~G~~Rsg~~~a~~l~~~~ 125 (154)
| +++.+++++......
T Consensus 100 -G-DT~t~lA~alaa~~~ 115 (383)
T COG0381 100 -G-DTNTTLAGALAAFYL 115 (383)
T ss_pred -C-CcchHHHHHHHHHHh
Confidence 4 677777755544433
No 136
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=48.49 E-value=71 Score=24.46 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHCCCcEEEEcCCCC--------cCCC-----cccCCCC-eEEEeecCCC
Q psy15044 32 PDTRDHLKTLSYRGVCHLVSLSEEC--------IPDG-----IERYEPL-NWILIPVEEY 77 (154)
Q Consensus 32 p~~~~~~~~l~~~gi~~Vv~l~~~~--------~~~~-----~~~~~~~-~~~~~p~~d~ 77 (154)
|.+.+.++.|.+.|++.|+-++... ++.. .....|+ .|.++|..+.
T Consensus 241 P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 241 PSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp SBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred ccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 3357889999999999999988765 1111 1122477 8888887554
No 137
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=48.18 E-value=34 Score=26.11 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCcE--EEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 99 GEAV--GVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 99 ~~~v--lVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
|.|+ ++++.+|.+ ||.++|+.+.. |++.+++.+...+.-
T Consensus 26 g~~i~~~fD~i~GTS-tGgiIA~~la~--g~s~~e~~~~y~~~~ 66 (312)
T cd07212 26 GRPIRELFDWIAGTS-TGGILALALLH--GKSLREARRLYLRMK 66 (312)
T ss_pred CCCchhhccEEEeeC-hHHHHHHHHHc--CCCHHHHHHHHHHhh
Confidence 4554 488889976 66677776643 999999998876543
No 138
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=47.40 E-value=1.1e+02 Score=22.20 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=41.1
Q ss_pred CHHHHHHHHHCCCcEEEEcCCCC--cCCCcccC-CCCeEEEeecCCCC-----CCCHHHHHHHHHHHHHHHhCCCcE--E
Q psy15044 34 TRDHLKTLSYRGVCHLVSLSEEC--IPDGIERY-EPLNWILIPVEEYH-----APTMRQVIKFIEFCVNCRQKGEAV--G 103 (154)
Q Consensus 34 ~~~~~~~l~~~gi~~Vv~l~~~~--~~~~~~~~-~~~~~~~~p~~d~~-----~p~~~~~~~~~~~i~~~~~~~~~v--l 103 (154)
..+-.+.|+++|+..|++-.... .+...... .++.|+++--.+.. .-+.+.++++.+.|..+.+++..| +
T Consensus 131 ~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~ 210 (230)
T PF01904_consen 131 TEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVF 210 (230)
T ss_dssp CHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred hHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35667889999999998776662 02222112 36778777433322 125677899999999988766554 4
Q ss_pred EeCCCC
Q psy15044 104 VHCRSG 109 (154)
Q Consensus 104 VHC~~G 109 (154)
+|+..+
T Consensus 211 fnN~~~ 216 (230)
T PF01904_consen 211 FNNDYE 216 (230)
T ss_dssp E-SBCC
T ss_pred EeCCcc
Confidence 454444
No 139
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=46.81 E-value=49 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=17.7
Q ss_pred ecCceeeecCCCCHHHHHHHHHCCCcEEEEc
Q psy15044 22 VPDELAAMACPDTRDHLKTLSYRGVCHLVSL 52 (154)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l 52 (154)
+.|.-|+++.. .......|+..||+.||--
T Consensus 50 VaG~nFG~GSS-RE~A~~al~~~Gi~~VIA~ 79 (129)
T cd01674 50 VSGFNFGTGSS-REQAATALLAKGIPLVVSG 79 (129)
T ss_pred EeCCccCCCCc-HHHHHHHHHHcCccEEEec
Confidence 34444444443 2333456889999988854
No 140
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.68 E-value=1.1e+02 Score=22.17 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCcEEEEcCCCCcC--CCc---------ccCCCCeEEEeecCC-CCCCCHHHHHHHHHHHHHHHhCCCcEE
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECIP--DGI---------ERYEPLNWILIPVEE-YHAPTMRQVIKFIEFCVNCRQKGEAVG 103 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~~--~~~---------~~~~~~~~~~~p~~d-~~~p~~~~~~~~~~~i~~~~~~~~~vl 103 (154)
+.++.+++.|+...+++.... . ... ....|...+.+. | .+..+++.+.++++.+.+...+ .++-
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~-~~~~ 194 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAF-GCKTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD-VPLG 194 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeec-CCCCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC-CeEE
Confidence 445677889999999995444 2 111 112355555543 4 3445667788888888876543 6888
Q ss_pred EeCCCCCC
Q psy15044 104 VHCRSGRG 111 (154)
Q Consensus 104 VHC~~G~~ 111 (154)
+||+.-.|
T Consensus 195 ~H~Hn~~g 202 (265)
T cd03174 195 LHTHNTLG 202 (265)
T ss_pred EEeCCCCC
Confidence 88875544
No 141
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=46.57 E-value=94 Score=24.01 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHCCCcEEEEcCCCCc--------CCC-----cccCC-CCeEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy15044 32 PDTRDHLKTLSYRGVCHLVSLSEECI--------PDG-----IERYE-PLNWILIPVEEYHAPTMRQVIKFIEFCVNC 95 (154)
Q Consensus 32 p~~~~~~~~l~~~gi~~Vv~l~~~~~--------~~~-----~~~~~-~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~ 95 (154)
|.+.+.++.|.+.|++.|+-++.... +.. ..... |..|.++|.... +.+.+..+.+.+.+.
T Consensus 243 P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~---~p~fi~~la~lv~~~ 317 (320)
T COG0276 243 PYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND---SPEFIDALADLVREL 317 (320)
T ss_pred CCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC---CHHHHHHHHHHHHHH
Confidence 44577788899999999888876651 100 01123 488988887544 344445555555443
No 142
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=46.53 E-value=37 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEe
Q psy15044 78 HAPTMRQVIKFIEFCVNCRQKGEAVGVH 105 (154)
Q Consensus 78 ~~p~~~~~~~~~~~i~~~~~~~~~vlVH 105 (154)
..|+.+.+++++.-...+.. .|+++|
T Consensus 60 ~~Pt~EevDdfL~~y~~l~~--qPvv~H 85 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDALMQ--QPVVLH 85 (85)
T ss_pred cCCCHHHHHHHHHHHHHHHh--CCeecC
Confidence 45788888888887777655 688887
No 143
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=45.79 E-value=71 Score=20.76 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 84 QVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 84 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
.+.++.+.+....+.+.||++..-.|.|++-
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~ 36 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSL 36 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHH
Confidence 4566777777777788999999999999995
No 144
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=45.67 E-value=26 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCC
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRS 108 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~ 108 (154)
..++.++.+....|.+|+|+|..
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 37788899999999999999954
No 145
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=45.22 E-value=44 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
.-|..++.-+.+.+.||.|||..-...+
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A~~d~ 139 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDAHEDT 139 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccHHHH
Confidence 3344444444455577777776644433
No 146
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=44.37 E-value=81 Score=23.90 Aligned_cols=22 Identities=5% Similarity=-0.142 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEEC 56 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~ 56 (154)
........+.+-..+|+.+...
T Consensus 160 ~~~~~~~~~~~~~~liDaR~~~ 181 (285)
T COG2897 160 ATLVADALEVPAVLLIDARSPE 181 (285)
T ss_pred HHHHHHHhcCCCeEEEecCCHH
Confidence 4555666666666699999875
No 147
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=43.36 E-value=25 Score=22.27 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=11.4
Q ss_pred CcEEEeCCCCCChH
Q psy15044 100 EAVGVHCRSGRGRT 113 (154)
Q Consensus 100 ~~vlVHC~~G~~Rs 113 (154)
.+|++-|.+|.|-|
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 46999999999744
No 148
>PRK10302 hypothetical protein; Provisional
Probab=43.23 E-value=1.4e+02 Score=22.42 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHCCCcEEEEcCC-------------------CCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy15044 39 KTLSYRGVCHLVSLSE-------------------ECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKG 99 (154)
Q Consensus 39 ~~l~~~gi~~Vv~l~~-------------------~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~ 99 (154)
+.|+++|+..|+.=.. ...+........+.|+++--.+....+.+.+..+.+.|..+. ++
T Consensus 148 ~lL~~~~~~~v~~D~~~~~~~~~~~~~~~daq~~~~~~P~~~~~T~~~~yvRlhG~~~~~y~~~~L~~wa~~i~~w~-~~ 226 (272)
T PRK10302 148 RGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVVTADNPLVRFIGSDDMAQNLELFQVWLQKLPQWH-QT 226 (272)
T ss_pred HHHHHcCCEEEecCccccccCCCCcHHHHHHhhcCCCCCCCeecCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHHH-hC
Confidence 5889999987743331 111111112235667766433333346677888999998874 33
Q ss_pred Cc--EEEeCCCCCChHHHHHHHHH
Q psy15044 100 EA--VGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 100 ~~--vlVHC~~G~~Rsg~~~a~~l 121 (154)
+. |++|+..+ +.+. --|..|
T Consensus 227 ~~~yvff~n~~~-~~A~-~nA~~l 248 (272)
T PRK10302 227 TTPYLFIHTPDI-AQAP-ELVQTL 248 (272)
T ss_pred CCEEEEEeCCch-hhHH-HHHHHH
Confidence 33 67777765 4454 334444
No 149
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=42.34 E-value=8.3 Score=31.55 Aligned_cols=20 Identities=40% Similarity=0.793 Sum_probs=0.0
Q ss_pred CCcEEEeCCCCCChHHHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a 118 (154)
|......|.+|++|||.+-+
T Consensus 453 Gavp~~NCKSGKDRTG~lD~ 472 (559)
T PF05925_consen 453 GAVPCWNCKSGKDRTGMLDA 472 (559)
T ss_dssp --------------------
T ss_pred CCeeeccCccCCccccccHH
Confidence 45678899999999997654
No 150
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=42.09 E-value=35 Score=26.38 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=12.7
Q ss_pred hCCCcEEEeCCCCCChH
Q psy15044 97 QKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rs 113 (154)
.++..||-||.+|.=-|
T Consensus 148 ~~~~~VLThCNaGaLAt 164 (346)
T COG0182 148 PDGDTVLTHCNAGALAT 164 (346)
T ss_pred ccCCeEEeeecCCceee
Confidence 45778999999985433
No 151
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=40.86 E-value=48 Score=27.16 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=14.7
Q ss_pred EEEeCCCCCChHHHHHHH
Q psy15044 102 VGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 102 vlVHC~~G~~Rsg~~~a~ 119 (154)
-...|.+|++|||.+=+.
T Consensus 459 P~wNCkSGKDRTGmmD~e 476 (564)
T PRK15378 459 PAWNCKSGKDRTGMMDSE 476 (564)
T ss_pred eeeccCCCCccccchHHH
Confidence 468999999999976553
No 152
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=40.42 E-value=1e+02 Score=23.24 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.++.+.+.....+|+.+++.--.|.|.|-++....+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 445566666667788999999999999965554443
No 153
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=40.42 E-value=1e+02 Score=23.24 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.++.+.+.....+|+.+++.--.|.|.|-++....+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 445566666667788999999999999965554443
No 154
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=40.05 E-value=33 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=15.5
Q ss_pred EEEeCCCCCChHHHHHHHHHHH
Q psy15044 102 VGVHCRSGRGRTGVMAACYLVY 123 (154)
Q Consensus 102 vlVHC~~G~~Rsg~~~a~~l~~ 123 (154)
||+=|.++..||. ++-+++-.
T Consensus 1 ILFvC~~N~cRS~-mAEai~~~ 21 (138)
T PF01451_consen 1 ILFVCTGNICRSP-MAEAILRH 21 (138)
T ss_dssp EEEEESSSSSHHH-HHHHHHHH
T ss_pred CEEEeCCCcchHH-HHHHHHHH
Confidence 6778999999998 55555433
No 155
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=39.91 E-value=1.2e+02 Score=20.51 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=24.1
Q ss_pred HHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCC
Q psy15044 38 LKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEE 76 (154)
Q Consensus 38 ~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d 76 (154)
.+.+++.|++||+-++.+. .-.......-..+++|.-.
T Consensus 77 ~~~l~~~GFkhV~~lT~D~-~Wk~~~~~~~~liwlPaip 114 (142)
T PF10673_consen 77 CEELKESGFKHVFYLTSDS-EWKQEEELEGSLIWLPAIP 114 (142)
T ss_pred HHHHHhcCCcEEEEEecCc-ccccccCCCCcEEEEeCcc
Confidence 4678899999999999986 3221112233466666543
No 156
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.32 E-value=58 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCcEEEEcC
Q psy15044 36 DHLKTLSYRGVCHLVSLS 53 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~ 53 (154)
++.+.+++.|+..++...
T Consensus 96 ~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 96 QDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HhHHHHHHCCCCEEECCC
Confidence 334444444444444433
No 157
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.31 E-value=1.6e+02 Score=21.88 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCcEEEEcCCCC-cCCCc-------ccCCCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEeC
Q psy15044 36 DHLKTLSYRGVCHLVSLSEEC-IPDGI-------ERYEPLNWILIPVEEY-HAPTMRQVIKFIEFCVNCRQKGEAVGVHC 106 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~-~~~~~-------~~~~~~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~~~~~~~vlVHC 106 (154)
+.++..+++|.+..+++.... .+... ....|...+.++ |. +.-.+..+.+.+..+.+....+.++-+||
T Consensus 113 ~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 113 PLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV--DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 445677778888888877654 11110 011355554443 64 45566778888888877654446899999
Q ss_pred CCCCC
Q psy15044 107 RSGRG 111 (154)
Q Consensus 107 ~~G~~ 111 (154)
+.-.|
T Consensus 191 Hn~~G 195 (266)
T cd07944 191 HNNLQ 195 (266)
T ss_pred CCCcc
Confidence 85443
No 158
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=39.04 E-value=1.3e+02 Score=21.64 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcC
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLG 126 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g 126 (154)
+-+...+.+.....+..+.-|-+|--+|..+.+.|.+..+|
T Consensus 104 ~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~g 144 (209)
T TIGR02584 104 NFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFG 144 (209)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhC
Confidence 34444455554333444444667744566666666655544
No 159
>KOG1004|consensus
Probab=38.56 E-value=99 Score=22.44 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=30.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
+|.|.|||..- +....++-++|...+++-++++..+++
T Consensus 185 NGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 185 NGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred CceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 58999999874 566778888888889999998866654
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=38.33 E-value=28 Score=22.87 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=13.5
Q ss_pred HHHHHHHHHHH--HhCCCcEEEeCCCCCChH
Q psy15044 85 VIKFIEFCVNC--RQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 85 ~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs 113 (154)
+..+.+.+... .. .++++|||++..+-.
T Consensus 81 I~~va~~La~~~~~~-~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWR-PGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHCC--S--TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHhccCC-CCcEEEECCCCChHH
Confidence 44455554432 12 268999999876533
No 161
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=38.28 E-value=1e+02 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=12.1
Q ss_pred hCCCcEEEeCCCCCCh
Q psy15044 97 QKGEAVGVHCRSGRGR 112 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~R 112 (154)
..|..||.||.+|.-.
T Consensus 145 ~~g~~ILThc~sg~la 160 (344)
T PRK05720 145 RKGQGILTHCNAGWLA 160 (344)
T ss_pred cCCCEEEEecCCCcce
Confidence 3567799999998543
No 162
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=38.26 E-value=35 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=16.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
..||+=|.+...||. ++-+++
T Consensus 3 ~~ILfVC~gN~cRSp-mAEa~~ 23 (144)
T PRK11391 3 NSILVVCTGNICRSP-IGERLL 23 (144)
T ss_pred CeEEEEcCCcHhHHH-HHHHHH
Confidence 368999999999998 555554
No 163
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=37.48 E-value=1.3e+02 Score=21.90 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcC
Q psy15044 88 FIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLG 126 (154)
Q Consensus 88 ~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g 126 (154)
+.+.+.+.....+..+.-|-+|--+|..+.+.|.+..+|
T Consensus 100 I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 100 IYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred HHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 334444444442344444667745677777777666565
No 164
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=37.47 E-value=47 Score=17.70 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=17.3
Q ss_pred CHHHHHHHHHCCCcEEEEcCC
Q psy15044 34 TRDHLKTLSYRGVCHLVSLSE 54 (154)
Q Consensus 34 ~~~~~~~l~~~gi~~Vv~l~~ 54 (154)
.....+.|+++||..+++-..
T Consensus 17 ~~~Q~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 17 PSKQIRWLRRNGIPFVVRADG 37 (47)
T ss_pred HHHHHHHHHHCCCeeEECCCC
Confidence 467889999999999987643
No 165
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=37.26 E-value=30 Score=21.68 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=11.9
Q ss_pred cEEEeCCCCCChHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACY 120 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~ 120 (154)
.|++-|.+| .|.++++--
T Consensus 2 ~Ill~C~~G--aSSs~la~k 19 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANA 19 (99)
T ss_pred EEEEECCCC--CCHHHHHHH
Confidence 489999887 455555533
No 166
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=36.48 E-value=33 Score=25.99 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=26.6
Q ss_pred EEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 103 GVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
+++..+|.+ ||.++|+.|.. .+++.+++++.+++.-
T Consensus 42 ~fDli~GTS-tGgiiA~~l~~-~~~t~~e~~~~y~~~~ 77 (309)
T cd07216 42 YFDLIGGTS-TGGLIAIMLGR-LRMTVDECIDAYTRLA 77 (309)
T ss_pred hcCeeeecc-HHHHHHHHhcc-cCCCHHHHHHHHHHHh
Confidence 377788976 77787776643 6899999998765543
No 167
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=36.39 E-value=56 Score=27.56 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=25.8
Q ss_pred ccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 62 ERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 62 ~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
+...|+.|.. |++.+ +.+.+.++++.+ ...++|++|||..=+|+-
T Consensus 234 f~~~G~~~~~-~vDGh---d~~~l~~al~~a---k~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 234 FEELGFNYIG-PVDGH---DLLELIETLKNA---KKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred HHHcCCcEEc-ccCCC---CHHHHHHHHHHH---hcCCCCEEEEEEecCCCC
Confidence 4445776654 66433 444444454433 334579999998655554
No 168
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.28 E-value=2e+02 Score=22.20 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=42.4
Q ss_pred HHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCC-CCHHHHHHHHHHHH------HHHhCCCcEEEeCCCCC
Q psy15044 38 LKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHA-PTMRQVIKFIEFCV------NCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 38 ~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~-p~~~~~~~~~~~i~------~~~~~~~~vlVHC~~G~ 110 (154)
.+.|++.|....+--+....+.......|+.+..++.....- .+...+.....++. ...++-.|=+|||.+|.
T Consensus 22 a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy 101 (352)
T PRK12446 22 IPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGF 101 (352)
T ss_pred HHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCch
Confidence 467777777666655544434444445578888776533221 12222222222221 22344467788887775
Q ss_pred ChHHHHHHHHH
Q psy15044 111 GRTGVMAACYL 121 (154)
Q Consensus 111 ~Rsg~~~a~~l 121 (154)
---+.+.++.+
T Consensus 102 ~s~p~~~aa~~ 112 (352)
T PRK12446 102 VSVPVVIGGWL 112 (352)
T ss_pred hhHHHHHHHHH
Confidence 32233444443
No 169
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=36.21 E-value=38 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.7
Q ss_pred EEEeCCCCCChHHHHHHHHHH
Q psy15044 102 VGVHCRSGRGRTGVMAACYLV 122 (154)
Q Consensus 102 vlVHC~~G~~Rsg~~~a~~l~ 122 (154)
||+=|.+..+||. ++.+++-
T Consensus 1 vLFVC~~N~cRSp-mAEa~~~ 20 (140)
T smart00226 1 ILFVCTGNICRSP-MAEALFK 20 (140)
T ss_pred CEEEeCChhhhHH-HHHHHHH
Confidence 4667999999998 5555553
No 170
>PRK10126 tyrosine phosphatase; Provisional
Probab=36.10 E-value=33 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=16.3
Q ss_pred CcEEEeCCCCCChHHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
..||+=|.+...||+ ++-+++
T Consensus 3 ~~iLFVC~gN~cRSp-mAEa~~ 23 (147)
T PRK10126 3 NNILVVCVGNICRSP-TAERLL 23 (147)
T ss_pred CeEEEEcCCcHhHHH-HHHHHH
Confidence 368889999999998 544444
No 171
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=35.40 E-value=92 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 84 QVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 84 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
.+.++...+-+.+.+|++|++ | |.|+|.
T Consensus 26 ~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSa 53 (176)
T COG0279 26 AIERAAQLLVQSLLNGNKVLA-C--GNGGSA 53 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEE-E--CCCcch
Confidence 355555666677788888887 5 444554
No 172
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=35.24 E-value=1e+02 Score=20.12 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=22.8
Q ss_pred CceeEeecCceeeecCCCCHHHHHHHHHCCCcEEEEcC
Q psy15044 16 RNFSWIVPDELAAMACPDTRDHLKTLSYRGVCHLVSLS 53 (154)
Q Consensus 16 ~~~~~i~~~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l~ 53 (154)
.+...|+.|+=++++.. .......++..||+.||-=.
T Consensus 47 ~~~~iiVaG~nFG~GSS-RE~A~~al~~~Gi~aVIA~S 83 (121)
T cd01579 47 AGPGFIVGGENYGQGSS-REHAALAPMYLGVRAVLAKS 83 (121)
T ss_pred CCCeEEEcCCcCCCCcc-HHHHHHHHHHHCCCEEEEcc
Confidence 34445666666666554 23334458888999998543
No 173
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.04 E-value=80 Score=20.23 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCcEEEEcCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEEC 56 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~ 56 (154)
.++.+.+++.|+..++......
T Consensus 92 ~~~~~~~~~~G~d~~~~~~~~~ 113 (122)
T cd02071 92 PEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred HHHHHHHHHCCCCEEECCCCCH
Confidence 4556777777777777666543
No 174
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=35.03 E-value=1.3e+02 Score=21.09 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~ 116 (154)
+.+.++++.+.+.+.+++.|++- |.|.|+.+
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 55888899999998888888774 55567653
No 175
>PRK12435 ferrochelatase; Provisional
Probab=34.83 E-value=92 Score=23.83 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHC-CCcEEEEcCCCC--------cCC-----CcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy15044 32 PDTRDHLKTLSYR-GVCHLVSLSEEC--------IPD-----GIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNC 95 (154)
Q Consensus 32 p~~~~~~~~l~~~-gi~~Vv~l~~~~--------~~~-----~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~ 95 (154)
|.+.+.++.|.+. |++.|+-+.... ++. ......|+.|.+.|..+. +...+..+.+.+.+.
T Consensus 232 P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~lN~---~p~fi~~La~lv~~~ 306 (311)
T PRK12435 232 PDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMPNA---DPLFIDALADVVLKK 306 (311)
T ss_pred CCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCCCC---CHHHHHHHHHHHHHH
Confidence 3356778888777 999988877654 111 112335778777665332 334445555555544
No 176
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.43 E-value=96 Score=24.07 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=11.8
Q ss_pred HhCCCcEEEeCCCCC
Q psy15044 96 RQKGEAVGVHCRSGR 110 (154)
Q Consensus 96 ~~~~~~vlVHC~~G~ 110 (154)
...|..||.||.+|.
T Consensus 134 I~~g~~ILThcnsg~ 148 (329)
T PRK06371 134 IKNGARILTHCNAGA 148 (329)
T ss_pred cCCCCEEEEeCCCCc
Confidence 345678999999885
No 177
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=33.86 E-value=45 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=13.4
Q ss_pred cEEEeCCCCCChHHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l 121 (154)
+|.-||-.|..-| ++||++-
T Consensus 1 kiIY~c~gg~hsS-vvAAaiH 20 (148)
T PF11385_consen 1 KIIYHCYGGAHSS-VVAAAIH 20 (148)
T ss_pred CEEEEeCCChhHH-HHHHHHH
Confidence 3678999997655 4555543
No 178
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.61 E-value=44 Score=21.13 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=9.7
Q ss_pred cEEEeCCCCCC
Q psy15044 101 AVGVHCRSGRG 111 (154)
Q Consensus 101 ~vlVHC~~G~~ 111 (154)
+|++-|.+|.+
T Consensus 3 kILlvCg~G~S 13 (104)
T PRK09590 3 KALIICAAGMS 13 (104)
T ss_pred EEEEECCCchH
Confidence 58999999994
No 179
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.42 E-value=2.3e+02 Score=21.95 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCcEEEEcCCCCc-CCCc-------ccCCCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEeC
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECI-PDGI-------ERYEPLNWILIPVEEY-HAPTMRQVIKFIEFCVNCRQKGEAVGVHC 106 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~-~~~~-------~~~~~~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~~~~~~~vlVHC 106 (154)
+.++..++.|....+++..... ++.. ....|...+ -+.|. +.-.+..+.+.+..+.+.....-++-+||
T Consensus 118 ~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 118 QHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV--YIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred HHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE--EEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 4456666667766666654430 1000 011244433 33353 44456667778888777664446899999
Q ss_pred CCCCC
Q psy15044 107 RSGRG 111 (154)
Q Consensus 107 ~~G~~ 111 (154)
+...|
T Consensus 196 HnnlG 200 (333)
T TIGR03217 196 HHNLS 200 (333)
T ss_pred CCCCc
Confidence 85444
No 180
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=33.41 E-value=1.4e+02 Score=19.59 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=17.3
Q ss_pred hCCCcEEEeCCC-CCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRS-GRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~-G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+|+|.|.. +.+..++.+ .|++...|.+
T Consensus 93 ~~~~~vVvY~~~~~~g~~A~r~-~~~l~~~G~~ 124 (138)
T cd01445 93 DLDKHLIATDGDDLGGFTACHI-ALAARLCGHP 124 (138)
T ss_pred CCCCeEEEECCCCCcchHHHHH-HHHHHHcCCC
Confidence 345799999975 123343333 3444556653
No 181
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.41 E-value=1.4e+02 Score=19.52 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHH
Q psy15044 82 MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a 118 (154)
.+.+.++.+.+.+.+.+|+.|++ |-. |-|+.++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~-~G~--G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFV-CGN--GHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEE-EES--THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE-EcC--chhhhHHH
Confidence 34577788888888888888877 444 45665443
No 182
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=33.39 E-value=51 Score=16.58 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHcC
Q psy15044 112 RTGVMAACYLVYFLG 126 (154)
Q Consensus 112 Rsg~~~a~~l~~~~g 126 (154)
-.|.++++|+-+.+|
T Consensus 18 l~GlfvaAylQYrRg 32 (37)
T PRK00665 18 LAGLFVAAWNQYKRG 32 (37)
T ss_pred HHHHHHHHHHHHhcc
Confidence 357788888866544
No 183
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=32.84 E-value=52 Score=16.54 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHcC
Q psy15044 112 RTGVMAACYLVYFLG 126 (154)
Q Consensus 112 Rsg~~~a~~l~~~~g 126 (154)
-.|.++++|+-+.+|
T Consensus 18 l~GlfvaAylQYrRg 32 (37)
T CHL00008 18 LAGLFVTAYLQYRRG 32 (37)
T ss_pred HHHHHHHHHHHHhhc
Confidence 357788888866554
No 184
>PRK13530 arsenate reductase; Provisional
Probab=32.58 E-value=69 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
..||+=|.+...||. ++-+++
T Consensus 4 ~~vLFvC~~N~cRS~-mAEal~ 24 (133)
T PRK13530 4 KTIYFLCTGNSCRSQ-MAEGWG 24 (133)
T ss_pred CEEEEEcCCchhHHH-HHHHHH
Confidence 468888888888887 555554
No 185
>PRK10785 maltodextrin glucosidase; Provisional
Probab=32.38 E-value=85 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=21.8
Q ss_pred CceeeecCCCCHHHHHHHHHCCCcEEEEc
Q psy15044 24 DELAAMACPDTRDHLKTLSYRGVCHLVSL 52 (154)
Q Consensus 24 ~~~~~~~~p~~~~~~~~l~~~gi~~Vv~l 52 (154)
..+++|....-.+.+..|+++||++|--.
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~ 199 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLN 199 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeC
Confidence 34666666555788999999999987654
No 186
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.06 E-value=2.2e+02 Score=21.31 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCH-HHH------HHHHHHHHHHHhCCCcEEEeCCCC
Q psy15044 37 HLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTM-RQV------IKFIEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 37 ~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~-~~~------~~~~~~i~~~~~~~~~vlVHC~~G 109 (154)
-.+.|.+.|....+-..+...........|+.++.++......... ..+ ...+..+.+..++.+|=+|||..+
T Consensus 20 La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 20 VAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3567888887765543322211122233578888888754221221 111 112223344445557888888765
Q ss_pred C
Q psy15044 110 R 110 (154)
Q Consensus 110 ~ 110 (154)
.
T Consensus 100 ~ 100 (348)
T TIGR01133 100 Y 100 (348)
T ss_pred c
Confidence 4
No 187
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=32.03 E-value=34 Score=20.72 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.1
Q ss_pred CcEEEeCCCCCChHHHHHH------HHHHHHcCCCHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAA------CYLVYFLGMTPERAITT 135 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a------~~l~~~~g~~~~~a~~~ 135 (154)
|+.+|-|... ||++.+.. -|+-...|++.++|-+.
T Consensus 34 GK~LV~~mQt-gr~ailg~dDlee~gyl~~~f~l~~eea~eL 74 (81)
T PF11256_consen 34 GKPLVLCMQT-GRFAILGPDDLEEPGYLEHAFGLSEEEAEEL 74 (81)
T ss_pred CceEEEEecC-CceEEEChhhcccccHHHHHhCCCHHHHHHH
Confidence 6788888876 79986654 56666678988888653
No 188
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=31.86 E-value=94 Score=20.10 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCC----CHHHHHHHHHHh
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGM----TPERAITTLRLA 139 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~----~~~~a~~~~r~~ 139 (154)
+..+..++....+ +.|. ..|--|||.+++..++...|. +.+++.+.+...
T Consensus 51 ~~kAa~l~~~l~~-~HpF----~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~v 104 (121)
T TIGR01550 51 FEVSAVLLYALIR-SHPF----NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGV 104 (121)
T ss_pred HHHHHHHHHHHHH-hCCC----ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHH
Confidence 4444444444433 2344 467779999988888887775 566677666543
No 189
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=31.69 E-value=2.1e+02 Score=21.73 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHH---HHHHHHcCCCHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA---CYLVYFLGMTPER 131 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a---~~l~~~~g~~~~~ 131 (154)
+.+.++++.+.+.+++++.+++ | |.|-||.+++ .-+....|+++..
T Consensus 41 ~~I~~av~~~~~~l~~gGrl~~-~--G~G~Sg~l~~~DA~e~~~t~g~~~~~ 89 (291)
T TIGR00274 41 PDIAAAVEQIVQAFQQGGRLIY-I--GAGTSGRLGVLDASECPPTFGVSPEL 89 (291)
T ss_pred HHHHHHHHHHHHHHhcCCEEEE-E--CCcHHHHHHHHHHHHhhhhcCCCHHH
Confidence 3455566666666677777665 3 3444665433 2233445665443
No 190
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=31.62 E-value=60 Score=23.13 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
.+.+...+..+++|.+..++|++=|
T Consensus 7 ~~av~~rl~~~~~i~~~LSGGlDSs 31 (255)
T PF00733_consen 7 EEAVARRLRSDKPIGILLSGGLDSS 31 (255)
T ss_dssp HHHHHHHCGCTSEEEEE--SSHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCChhHH
Confidence 3345555567789999999999843
No 191
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=31.11 E-value=58 Score=22.80 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.6
Q ss_pred EEEeC-CCCCChHHHHHHHHHHHHcCCC
Q psy15044 102 VGVHC-RSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 102 vlVHC-~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
+.||. .-|-||||-+..-+++...|.+
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 67888 5899999999988888878864
No 192
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=30.85 E-value=84 Score=24.39 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=26.6
Q ss_pred EEeCCCCCChHHHHHHHHHHHHc-----CCCHHHHHHHHHHhCC
Q psy15044 103 GVHCRSGRGRTGVMAACYLVYFL-----GMTPERAITTLRLARP 141 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l~~~~-----g~~~~~a~~~~r~~Rp 141 (154)
+++..+|.+ ||.++|+.|..-. .++.+++++......+
T Consensus 43 ~FDliaGTS-tGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~~ 85 (349)
T cd07214 43 YFDVIAGTS-TGGLITAMLTAPNENKRPLFAAKDIVQFYLENGP 85 (349)
T ss_pred hCCEEeeCC-HHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhH
Confidence 789999976 6667777664421 3688998887765443
No 193
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=30.66 E-value=1.6e+02 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHH
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~ 119 (154)
.+.+++++...|.|.|-.+.++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4568999999999999755443
No 194
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.59 E-value=2.4e+02 Score=22.55 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHhCCCcEEEeCCCCCChH---HHHHHHHHHHHcCCCHHHHHHHH
Q psy15044 92 CVNCRQKGEAVGVHCRSGRGRT---GVMAACYLVYFLGMTPERAITTL 136 (154)
Q Consensus 92 i~~~~~~~~~vlVHC~~G~~Rs---g~~~a~~l~~~~g~~~~~a~~~~ 136 (154)
+..+.+.|-+|.+.+-.|.+.+ -.+.+.++ ...||+++||++.+
T Consensus 299 ~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~-~~~gmtp~EaL~a~ 345 (406)
T COG1228 299 ARKLIDAGVKVAIGTDHNPGTSHGSLALEMALA-VRLGMTPEEALKAA 345 (406)
T ss_pred HHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHH-HHcCCCHHHHHHHH
Confidence 5556678889999999998873 22333333 44789999999876
No 195
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=29.99 E-value=48 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=13.1
Q ss_pred cEEEeCCCCCChHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~ 119 (154)
+|++-|.+|.+-| ++++.
T Consensus 4 kILvvCgsG~~TS-~m~~~ 21 (94)
T PRK10310 4 KIIVACGGAVATS-TMAAE 21 (94)
T ss_pred eEEEECCCchhHH-HHHHH
Confidence 5999999999744 45443
No 196
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=29.85 E-value=73 Score=24.14 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCC----hHHHHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRG----RTGVMAACYL 121 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~----Rsg~~~a~~l 121 (154)
+....+++.+...++.||.++.|+..+.. +.+.++.-|.
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yi 195 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYI 195 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhC
Confidence 34567788888889999999999999988 6666666665
No 197
>KOG1905|consensus
Probab=29.73 E-value=1.2e+02 Score=23.41 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChH
Q psy15044 81 TMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRT 113 (154)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 113 (154)
+++.+..-++.+.++..++++++||-.||++-+
T Consensus 37 ~~e~l~~kv~elA~li~~sk~lvv~tGAGISTa 69 (353)
T KOG1905|consen 37 PPEVLRTKVEELAQLIQQSKHLVVYTGAGISTA 69 (353)
T ss_pred CHHHHHHHHHHHHHHHhhCCcEEEEeCCccccc
Confidence 445577777777777788899999999999744
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=29.44 E-value=59 Score=23.96 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCChHHHHHH--HHHHHHcCCCHH
Q psy15044 99 GEAVGVHCRSGRGRTGVMAA--CYLVYFLGMTPE 130 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a--~~l~~~~g~~~~ 130 (154)
.++++|-..+|-|-|.+++. ++++...+++++
T Consensus 13 ~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~ 46 (315)
T PF00580_consen 13 EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPE 46 (315)
T ss_dssp SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG
T ss_pred CCCEEEEeCCCCCchHHHHHHHHHhhccccCChH
Confidence 48999999999999988875 456664445543
No 199
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.21 E-value=17 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred ceeEeecCcee----eecCC--------CC----HHHHHHHHHCCCcEEEE
Q psy15044 17 NFSWIVPDELA----AMACP--------DT----RDHLKTLSYRGVCHLVS 51 (154)
Q Consensus 17 ~~~~i~~~~~~----~~~~p--------~~----~~~~~~l~~~gi~~Vv~ 51 (154)
+.+||.||+.. .+... .+ ..-+++..++|+..|+-
T Consensus 1 DtSWIkPGk~~W~Ww~~~~~~~~~~~~g~~t~~~k~yIDfAa~~G~eYvlv 51 (273)
T PF10566_consen 1 DTSWIKPGKAAWSWWSMHNGKGVGFKHGATTETQKRYIDFAAEMGIEYVLV 51 (273)
T ss_dssp -HCC---EEEEECTCCCCTTSSBSS-BSSSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCCCcCCceEEEeecccCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 35788888665 11111 11 35567888999999887
No 200
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=28.51 E-value=1.3e+02 Score=17.85 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHcCCCHHHHHHHHHHh
Q psy15044 121 LVYFLGMTPERAITTLRLA 139 (154)
Q Consensus 121 l~~~~g~~~~~a~~~~r~~ 139 (154)
++...|++++++++.+.+.
T Consensus 64 ~~~~~gi~~~~v~~ev~~~ 82 (83)
T PF01503_consen 64 LLASMGIDLDEVFDEVHRR 82 (83)
T ss_dssp HHHHTT--HHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhc
Confidence 4456799999999998653
No 201
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=28.41 E-value=57 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=16.2
Q ss_pred cEEEeCCCCCChHHHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACYLV 122 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l~ 122 (154)
.||+=|.+...||. ++.+++-
T Consensus 2 ~iLfvc~~N~~RS~-mAEai~~ 22 (141)
T cd00115 2 KVLFVCTGNICRSP-MAEAIFR 22 (141)
T ss_pred eEEEEecChhhhhH-HHHHHHH
Confidence 58888999999998 5555543
No 202
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=28.20 E-value=57 Score=20.82 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCC--HHHHHHHHHHHHHHHhCCCcEEEeCCC
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPT--MRQVIKFIEFCVNCRQKGEAVGVHCRS 108 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~--~~~~~~~~~~i~~~~~~~~~vlVHC~~ 108 (154)
+-.+.|.+.|.+..|-..............++.+..+|+.....+. ...+..+..++ ...+..+=+|||..
T Consensus 9 ~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~Dvv~~~~ 81 (160)
T PF13579_consen 9 ELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLL--AARRERPDVVHAHS 81 (160)
T ss_dssp HHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHC--HHCT---SEEEEEH
T ss_pred HHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHH--hhhccCCeEEEecc
Confidence 3456788888876554443331222233468888888877654211 11222333333 11444677888876
No 203
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=28.18 E-value=80 Score=23.04 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=25.0
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCC-CcEEEeCCC-CCChHHHHHHHHH
Q psy15044 73 PVEEYHAPTMRQVIKFIEFCVNCRQKG-EAVGVHCRS-GRGRTGVMAACYL 121 (154)
Q Consensus 73 p~~d~~~p~~~~~~~~~~~i~~~~~~~-~~vlVHC~~-G~~Rsg~~~a~~l 121 (154)
-+.|++..+. +..+..++.-+.++| .+|+|||-. |.+-.+.-+..|+
T Consensus 35 LlSdGGVHSh--~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl 83 (223)
T PF06415_consen 35 LLSDGGVHSH--IDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYL 83 (223)
T ss_dssp EESS-SSS----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHH
T ss_pred EecCCCcccc--HHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHH
Confidence 3456666552 344444555555565 569999975 7764444444444
No 204
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=28.11 E-value=60 Score=21.62 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=16.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.+||+=|.+...||. ++-+++
T Consensus 3 ~kVLFVC~gN~cRSp-mAE~l~ 23 (139)
T COG0394 3 MKVLFVCTGNICRSP-MAEALL 23 (139)
T ss_pred ceEEEEcCCCcccCH-HHHHHH
Confidence 479999999999998 444444
No 205
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=28.07 E-value=1.4e+02 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCC
Q psy15044 88 FIEFCVNCRQKGEAVGVHCRSGRG 111 (154)
Q Consensus 88 ~~~~i~~~~~~~~~vlVHC~~G~~ 111 (154)
|...+.-+.+.+.||.+||....+
T Consensus 116 f~~ql~lA~~~~~Pv~iH~r~a~~ 139 (258)
T PRK11449 116 LDEQLKLAKRYDLPVILHSRRTHD 139 (258)
T ss_pred HHHHHHHHHHhCCCEEEEecCccH
Confidence 333444444456889999876443
No 206
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.95 E-value=2.9e+02 Score=21.41 Aligned_cols=73 Identities=14% Similarity=-0.005 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCcEEEEcCCCCcCCCc---------ccCCCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEe
Q psy15044 36 DHLKTLSYRGVCHLVSLSEECIPDGI---------ERYEPLNWILIPVEEY-HAPTMRQVIKFIEFCVNCRQKGEAVGVH 105 (154)
Q Consensus 36 ~~~~~l~~~gi~~Vv~l~~~~~~~~~---------~~~~~~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~~~~~~~vlVH 105 (154)
+.++..++.|....+++.... .... ....|...+ -+.|. +.-.+..+.+.+..+.+....+.++-+|
T Consensus 119 ~~i~~ak~~G~~v~~~l~~a~-~~~~e~l~~~a~~~~~~Ga~~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 119 QHIGLARELGMDTVGFLMMSH-MAPPEKLAEQAKLMESYGAQCV--YVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHCCCeEEEEEEecc-CCCHHHHHHHHHHHHhCCCCEE--EeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 445666677777777666543 1110 011344443 34453 4445667788888887766445688999
Q ss_pred CCCCCC
Q psy15044 106 CRSGRG 111 (154)
Q Consensus 106 C~~G~~ 111 (154)
|+.-.|
T Consensus 196 ~HnnlG 201 (337)
T PRK08195 196 GHNNLG 201 (337)
T ss_pred eCCCcc
Confidence 884443
No 207
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=27.93 E-value=2.7e+02 Score=21.06 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=37.6
Q ss_pred HHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCC-CCCHH------HHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy15044 37 HLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYH-APTMR------QVIKFIEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 37 ~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~-~p~~~------~~~~~~~~i~~~~~~~~~vlVHC~~G 109 (154)
-.+.|.+.|....+-..............|+.++.++..... ..... .+...+..+.+..++..|=+|||..+
T Consensus 21 la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~ 100 (357)
T PRK00726 21 LAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGG 100 (357)
T ss_pred HHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 345678888887665444421122223358888888764321 11111 11222222333444446888888864
Q ss_pred C
Q psy15044 110 R 110 (154)
Q Consensus 110 ~ 110 (154)
.
T Consensus 101 ~ 101 (357)
T PRK00726 101 Y 101 (357)
T ss_pred c
Confidence 3
No 208
>KOG3020|consensus
Probab=27.78 E-value=86 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCC-cEEEeCCCC
Q psy15044 85 VIKFIEFCVNCRQKGE-AVGVHCRSG 109 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~-~vlVHC~~G 109 (154)
...+++.+.+...... ++.|||-.|
T Consensus 159 ~~d~~eIl~~~~~~~~~~vvvHsFtG 184 (296)
T KOG3020|consen 159 HEDLLEILKRFLPECHKKVVVHSFTG 184 (296)
T ss_pred hHHHHHHHHHhccccCCceEEEeccC
Confidence 3444555554443334 789999888
No 209
>KOG4388|consensus
Probab=27.77 E-value=91 Score=26.51 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCeEEEeecCCCC-CCCHHHHHHHHHHH-----HHHH---hCCCcEEEeCCCC
Q psy15044 65 EPLNWILIPVEEYH-APTMRQVIKFIEFC-----VNCR---QKGEAVGVHCRSG 109 (154)
Q Consensus 65 ~~~~~~~~p~~d~~-~p~~~~~~~~~~~i-----~~~~---~~~~~vlVHC~~G 109 (154)
++-.+++++..+.. .++.+..-.++..- .-|- .....++|||++|
T Consensus 352 p~pv~vri~s~~~r~g~~~~~sssllss~g~~~~~~wh~P~p~S~sli~HcHGG 405 (880)
T KOG4388|consen 352 PGPVLVRIISYDLREGQDSEESSSLLSSNGQRSLELWHRPAPRSRSLIVHCHGG 405 (880)
T ss_pred CCCeEEEeechhhhcCCCchhhHHHHhhcCccccccCCCCCCCCceEEEEecCC
Confidence 34566677766643 34433333232221 1111 1235699999988
No 210
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=27.31 E-value=1e+02 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
.++..+-..+....+.|..++|-|++=+
T Consensus 51 pWL~~l~~~~~~~~~~~~~~vi~CSALK 78 (161)
T COG3265 51 PWLEALGDAAASLAQKNKHVVIACSALK 78 (161)
T ss_pred HHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence 4566666666666666667889998744
No 211
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=27.29 E-value=3.2e+02 Score=21.79 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=45.1
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCC------hHHHHHHHHHHHHcCCC--------HHHHHHHHH
Q psy15044 72 IPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRG------RTGVMAACYLVYFLGMT--------PERAITTLR 137 (154)
Q Consensus 72 ~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~------Rsg~~~a~~l~~~~g~~--------~~~a~~~~r 137 (154)
+|+.+....+...+.+.+..|....++|.+|++--+-|+- -|-.-++-+|-...+.. -+++.+.+.
T Consensus 22 vPi~~g~I~dd~RI~~~lpTI~~l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~i~ 101 (389)
T PRK00073 22 VPVKDGKITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIA 101 (389)
T ss_pred CCCcCCcCCChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHh
Confidence 4665544456667999999999999888887775555532 23334445554444322 245666677
Q ss_pred HhCCCCC
Q psy15044 138 LARPGSL 144 (154)
Q Consensus 138 ~~Rp~~i 144 (154)
...++.|
T Consensus 102 ~l~~G~i 108 (389)
T PRK00073 102 ALKDGEV 108 (389)
T ss_pred cCCCCcE
Confidence 7777754
No 212
>KOG1529|consensus
Probab=27.27 E-value=73 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=18.3
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
..+.|+++-|..|++-+-...++++
T Consensus 234 ~~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 234 KLSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred ccCCCEEEeeccchhHHHHHHHHHh
Confidence 4468999999999976655555544
No 213
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=27.27 E-value=1.7e+02 Score=22.45 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHCCCcEEEEcCCC
Q psy15044 32 PDTRDHLKTLSYRGVCHLVSLSEE 55 (154)
Q Consensus 32 p~~~~~~~~l~~~gi~~Vv~l~~~ 55 (154)
|...+.++.|.+.|++.|+-+...
T Consensus 246 P~~~~~l~~l~~~G~k~V~vvP~g 269 (322)
T TIGR00109 246 PYTEELLEKLGEQGVQHIVVVPIG 269 (322)
T ss_pred CCHHHHHHHHHHcCCceEEEECCc
Confidence 444566677777777777776654
No 214
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.98 E-value=1.3e+02 Score=22.09 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCC
Q psy15044 39 KTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRS 108 (154)
Q Consensus 39 ~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 108 (154)
+.|.++||...|.+.+.. ..+.. +. + .+...-.++++.++.+..+|+.|..|--.
T Consensus 23 d~l~~~~ipf~v~vIP~~-~d~~~---~~--------~---~~l~~~~~f~~~L~~~~~~Gg~I~lHGYt 77 (243)
T PF10096_consen 23 DYLYKYGIPFSVAVIPVY-VDPNG---GI--------T---VNLSDNPEFVEYLRYLQARGGEIVLHGYT 77 (243)
T ss_pred HHHHHCCCCEEEEEEecc-cCCCC---cc--------c---ccchhhHHHHHHHHHHHhcCCEEEEEecc
Confidence 456667887777776665 11111 11 1 12233466788888888899999999653
No 215
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=26.90 E-value=1e+02 Score=20.87 Aligned_cols=34 Identities=24% Similarity=0.134 Sum_probs=20.1
Q ss_pred eCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 105 HCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 105 HC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
.|..|.++.-+...+--....+++.++|++.++.
T Consensus 128 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~ 161 (182)
T cd01906 128 ATAIGSGSQYALGILEKLYKPDMTLEEAIELALK 161 (182)
T ss_pred EEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 3556666553333333333457899999987754
No 216
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=26.88 E-value=90 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred eeEee-cCceeeecCCCCHHHHHHHHHC-CCcEEEEcCCC
Q psy15044 18 FSWIV-PDELAAMACPDTRDHLKTLSYR-GVCHLVSLSEE 55 (154)
Q Consensus 18 ~~~i~-~~~~~~~~~p~~~~~~~~l~~~-gi~~Vv~l~~~ 55 (154)
+.|+. .|++++-+-|.+.++.+.|... |+..||--..+
T Consensus 26 ~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~d 65 (199)
T PF14597_consen 26 HAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRD 65 (199)
T ss_dssp EEE--TT--EEES-----HHHHHHHHHTT--SEEE-SSGG
T ss_pred EEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeCCh
Confidence 35665 4688888888889999999996 78887755444
No 217
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=26.86 E-value=1.4e+02 Score=22.71 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCChH--------HHHHHHHHHHHc--------CCCHHHHHHHHHHhCC
Q psy15044 88 FIEFCVNCRQKGEAVGVHCRSGRGRT--------GVMAACYLVYFL--------GMTPERAITTLRLARP 141 (154)
Q Consensus 88 ~~~~i~~~~~~~~~vlVHC~~G~~Rs--------g~~~a~~l~~~~--------g~~~~~a~~~~r~~Rp 141 (154)
+...+....+.|.+|+|||-...-.. .+..+..+.... .++..++++.+++.|.
T Consensus 115 l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~ 184 (335)
T cd01294 115 IYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE 184 (335)
T ss_pred HHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC
Confidence 34444445566789999996542100 011122232321 6788999999988773
No 218
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=26.75 E-value=1.6e+02 Score=18.15 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
+.++++.+.-+...|-++.+||. + +.-+..+.+.+
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~-~-~~i~~aa~~hl 66 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM-E-SGIGLAASLHL 66 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS-S-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEecCC-C-CcHHHHHHHHH
Confidence 56677777777788899999997 4 33443444433
No 219
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=26.49 E-value=1.5e+02 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHH
Q psy15044 84 QVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 84 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~ 116 (154)
.+.++++.+.+.+++|+.|++ |-+| -||.+
T Consensus 43 ~I~~a~~~~~~~l~~ggrl~~-~GaG--~Sg~l 72 (296)
T PRK12570 43 QIAQAVDKIVAAFKKGGRLIY-MGAG--TSGRL 72 (296)
T ss_pred HHHHHHHHHHHHHHcCCeEEE-ECCc--hhHHH
Confidence 355666666667778877665 4444 45544
No 220
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=26.46 E-value=74 Score=18.03 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=13.4
Q ss_pred cEEEeCCCCCChHHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l 121 (154)
.+++-|..|.+-|. ++..-+
T Consensus 1 ~il~vc~~G~~~s~-~l~~~l 20 (84)
T cd00133 1 KILVVCGSGIGSSS-MLAEKL 20 (84)
T ss_pred CEEEECCCcHhHHH-HHHHHH
Confidence 37888999987554 444433
No 221
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=26.07 E-value=86 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHHHH---HcCCCHHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACYLVY---FLGMTPERAITTLR 137 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~l~~---~~g~~~~~a~~~~r 137 (154)
.|.+|||.-|. |+ ++..+|++ ..+++.++|+..++
T Consensus 161 ~pdviH~ND~H--ta-l~~~el~r~l~~~~~~~~~a~~~~~ 198 (601)
T TIGR02094 161 DPDVYHLNEGH--AA-FVTLERIRELIAQGLSFEEAWEAVR 198 (601)
T ss_pred CceEEEeCCch--HH-HHHHHHHHHHHHcCCCHHHHHHhcC
Confidence 78999999986 54 66667643 35788888876543
No 222
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=26.01 E-value=1.5e+02 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=27.9
Q ss_pred hCCCcEEEeCC---CCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 97 QKGEAVGVHCR---SGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 97 ~~~~~vlVHC~---~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
.+++|+-++=. ...+|||.. .+|..++|++.+..++.+++
T Consensus 268 se~~p~~~~riGvp~~fg~sg~~--~~Ll~~ygl~~~~I~~~v~~ 310 (312)
T COG3958 268 SENGPTPMRRIGVPDTFGRSGKA--DELLDYYGLDPESIAARVLE 310 (312)
T ss_pred HhcCCcceEEecCCchhccccch--HHHHHHhCCCHHHHHHHHHh
Confidence 34456655522 334788876 67778899999999988765
No 223
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=25.99 E-value=1.3e+02 Score=19.99 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 106 CRSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 106 C~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
-..|.||+-+++++.+......+.++|-+
T Consensus 27 l~~~lG~~ev~vaa~~ygqa~~~~~ear~ 55 (151)
T COG1513 27 LADGLGLAEVFVAAALYGQAALPADEARA 55 (151)
T ss_pred HHhhcCccHHHHHHHHHhhccCCHHHHHH
Confidence 45788999999998887766777776644
No 224
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=25.92 E-value=2.2e+02 Score=19.48 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHHCCCcEEEEcCCCCcCCCc-ccCCCCe--EEEeecCCCCCCC--------HHHHHHHHHHHHHHHhC
Q psy15044 30 ACPDTRDHLKTLSYRGVCHLVSLSEECIPDGI-ERYEPLN--WILIPVEEYHAPT--------MRQVIKFIEFCVNCRQK 98 (154)
Q Consensus 30 ~~p~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~-~~~~~~~--~~~~p~~d~~~p~--------~~~~~~~~~~i~~~~~~ 98 (154)
.+|.....++.|++.|++.+.++-........ .....+. +.++|-......+ ...+..|+......+..
T Consensus 38 kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~ 117 (166)
T PF10354_consen 38 KYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP 117 (166)
T ss_pred hcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44434578899999999999888877622211 1222344 3344544311111 12355555556666666
Q ss_pred CCcEEEeCCCCCC
Q psy15044 99 GEAVGVHCRSGRG 111 (154)
Q Consensus 99 ~~~vlVHC~~G~~ 111 (154)
+|.|+|-=..|..
T Consensus 118 ~G~IhVTl~~~~p 130 (166)
T PF10354_consen 118 DGEIHVTLKDGQP 130 (166)
T ss_pred CCEEEEEeCCCCC
Confidence 6777765555544
No 225
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.84 E-value=1.1e+02 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a 118 (154)
+.+.++++.+.+.+++++.+++ | |.|-||.++.
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la~ 65 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLGV 65 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHHH
Confidence 3466666677777777777654 4 4446776554
No 226
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.80 E-value=1.3e+02 Score=26.09 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=27.1
Q ss_pred cccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCh
Q psy15044 61 IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGR 112 (154)
Q Consensus 61 ~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 112 (154)
.++.-|+.|+ -|++.+ +.+.+.++++.+.+. ...+||+||-..-+|+
T Consensus 321 lFe~lG~~Y~-GpvDGH---di~~Li~~l~~~k~~-~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 321 LFEELGLYYI-GPVDGH---NIEDLVCVLREVSSL-DSMGPVLVHVITEENR 367 (701)
T ss_pred cHHHcCCeEE-CccCCC---CHHHHHHHHHHHHcC-CCCCCEEEEEEecCCC
Confidence 4555577774 465444 444445455444432 1137999999876665
No 227
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=25.26 E-value=1.9e+02 Score=21.58 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy15044 103 GVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGS 143 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~~ 143 (154)
++...+|.+ +|.++|+.+. .|.+.+++++.........
T Consensus 34 ~fD~i~GTS-aGaiia~~la--~g~~~~e~~~~~~~~~~~i 71 (288)
T cd07213 34 QIDLFAGTS-AGSLIALGLA--LGYSPRQVLKLYEEVGLKV 71 (288)
T ss_pred ceeEEEEeC-HHHHHHHHHH--cCcCHHHHHHHHHHhCccc
Confidence 466678876 6667776663 5889999999888765543
No 228
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.21 E-value=67 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=10.4
Q ss_pred cEEEeCCCCCChH
Q psy15044 101 AVGVHCRSGRGRT 113 (154)
Q Consensus 101 ~vlVHC~~G~~Rs 113 (154)
+|++-|.+|.+-|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999644
No 229
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=25.18 E-value=3e+02 Score=21.80 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHH-----HcCCCHHHHHHHHH
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY-----FLGMTPERAITTLR 137 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~-----~~g~~~~~a~~~~r 137 (154)
.+.+....+.+.+|.+||..-. +.-+..|+.. +...+.+++++.++
T Consensus 124 ~~~i~~A~~~g~~v~~Ha~g~~---~~~L~a~l~aGi~~dH~~~~~eea~e~l~ 174 (422)
T cd01295 124 LAKIQAAKKAGKPVDGHAPGLS---GEELNAYMAAGISTDHEAMTGEEALEKLR 174 (422)
T ss_pred HHHHHHHHhCCCEEEEeCCCCC---HHHHHHHHHcCCCCCcCCCcHHHHHHHHH
Confidence 3444445567789999995432 2333334321 23567888888774
No 230
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=25.15 E-value=1.1e+02 Score=15.62 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 115 VMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 115 ~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
..+.-|| ...+|+++.|+...=.
T Consensus 16 ~~A~~~L-~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYL-EANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHH-HHTTT-HHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHh
Confidence 3555555 5589999999986643
No 231
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.05 E-value=1.2e+02 Score=22.08 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHH
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACY 120 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~ 120 (154)
+.++.+.+.........|.||-.+|.|-|......+
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 445555554433344679999999999997554443
No 232
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=25.04 E-value=1.8e+02 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=24.1
Q ss_pred ceeEeecCceeeecCC------CCHHHHHHHHHCCCcEEEEcC
Q psy15044 17 NFSWIVPDELAAMACP------DTRDHLKTLSYRGVCHLVSLS 53 (154)
Q Consensus 17 ~~~~i~~~~~~~~~~p------~~~~~~~~l~~~gi~~Vv~l~ 53 (154)
-+++|.|+.+..+..- .-.+.+..|+++||++|.-.-
T Consensus 12 v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P 54 (551)
T PRK10933 12 VIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTP 54 (551)
T ss_pred eEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECC
Confidence 3567777777643211 114667899999999986543
No 233
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.89 E-value=2.9e+02 Score=20.45 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=19.7
Q ss_pred CHHHHHHHHHCCCcEEEEcCCCC
Q psy15044 34 TRDHLKTLSYRGVCHLVSLSEEC 56 (154)
Q Consensus 34 ~~~~~~~l~~~gi~~Vv~l~~~~ 56 (154)
+-+|++.|+..||+.|+.+..+.
T Consensus 13 ~~eDlekMa~sGI~~Vit~AhdP 35 (254)
T COG1099 13 GFEDLEKMALSGIREVITLAHDP 35 (254)
T ss_pred cHHHHHHHHHhChhhhhhcccCC
Confidence 36788999999999999998775
No 234
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=24.68 E-value=1.9e+02 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCChHHHHHHHH
Q psy15044 100 EAVGVHCRSGRGRTGVMAACY 120 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~ 120 (154)
.|+++|+..|.|.|=.+-|+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~ 55 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIA 55 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 589999999999998766654
No 235
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=24.56 E-value=3.8e+02 Score=21.65 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=46.7
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCCc-EEEeCCCCCC-------hHHHHHHHHHHHHcC--------CCHHHHHHH
Q psy15044 72 IPVEEYHAPTMRQVIKFIEFCVNCRQKGEA-VGVHCRSGRG-------RTGVMAACYLVYFLG--------MTPERAITT 135 (154)
Q Consensus 72 ~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~-vlVHC~~G~~-------Rsg~~~a~~l~~~~g--------~~~~~a~~~ 135 (154)
+|+.+....+...+.+.+..|....++|.+ |++--+-|.- -|-.-++.+|-...+ +..+++.+.
T Consensus 28 vPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~ 107 (417)
T PTZ00005 28 VPIKEGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEA 107 (417)
T ss_pred CCCcCCcCCChHhHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHHH
Confidence 455444455666799999999999998885 6555554541 244455666655442 334566777
Q ss_pred HHHhCCCCC
Q psy15044 136 LRLARPGSL 144 (154)
Q Consensus 136 ~r~~Rp~~i 144 (154)
++..+++.|
T Consensus 108 i~~l~~GeV 116 (417)
T PTZ00005 108 CANAKNGSV 116 (417)
T ss_pred HHcCCCCCE
Confidence 778888754
No 236
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=24.21 E-value=27 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPG 142 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~Rp~ 142 (154)
|...++...+..-.+.|+.| +..+..|+-++++.|-.+.+|+..-..+...++.-|+
T Consensus 57 FyasvE~~~~p~L~~kPv~V-~~~~~~~~~V~a~sy~AR~~GV~~gM~~~~A~~lcP~ 113 (404)
T cd01701 57 FFVSVSIRNRPDLKGKPVAV-CHGKGPNSEIASCNYEARSYGIKNGMWVGQAKKLCPQ 113 (404)
T ss_pred HHHHHHhhhCccccCCCEEE-ecCCCCCeEEEecCHHHHhcCCCCCCcHHHHHHHCCC
Confidence 34444544444445789988 4444346656677887777765443333333334444
No 237
>PRK08624 hypothetical protein; Provisional
Probab=24.10 E-value=46 Score=26.26 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=28.7
Q ss_pred EEeCCCCCChHHHHHHHHH----HHHcCCCHHHHHHHHHHhCCC
Q psy15044 103 GVHCRSGRGRTGVMAACYL----VYFLGMTPERAITTLRLARPG 142 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l----~~~~g~~~~~a~~~~r~~Rp~ 142 (154)
..||-+|.|-+|=++--+. |...++++.+|++.+...-.-
T Consensus 59 ~yhCF~GCGa~GDVf~Fv~~~~~me~~~lsF~eAve~LA~~aGI 102 (373)
T PRK08624 59 NFHCYTRCGDIFDVFELLCKRLKMEGKALSFSKAIRKITKILGL 102 (373)
T ss_pred EEEEeCCCCCCCceeeehhhhhhccccCCCHHHHHHHHHHHhCc
Confidence 6899988888886655432 124579999999999765443
No 238
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.97 E-value=2.4e+02 Score=19.15 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHH
Q psy15044 81 TMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMA 117 (154)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~ 117 (154)
+.+.+.++++.+.+...+++.|++. |.|.|+.++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3456888888888877667777775 556676544
No 239
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=23.85 E-value=1.8e+02 Score=20.98 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCC
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGM 127 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~ 127 (154)
+..+.+++....++|.++.+....+ +||..-.+-.|....|+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGV 57 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCC
Confidence 3455677777777788888876655 67877777777664554
No 240
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=23.83 E-value=2.4e+02 Score=20.07 Aligned_cols=26 Identities=15% Similarity=-0.066 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 85 VIKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 85 ~~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
+..+.+.+..+...|-++.+||..+-
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 44555666666677889999998664
No 241
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=23.74 E-value=66 Score=19.86 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=13.9
Q ss_pred HcCCCHHHHHHHHHHhCC
Q psy15044 124 FLGMTPERAITTLRLARP 141 (154)
Q Consensus 124 ~~g~~~~~a~~~~r~~Rp 141 (154)
..|++++++++.++..+-
T Consensus 52 r~G~~~~~ii~~L~gi~~ 69 (95)
T PF12637_consen 52 RSGVPPEEIIDQLRGIRC 69 (95)
T ss_pred HcCCCHHHHHHHhcCCCC
Confidence 368899999888876653
No 242
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=23.64 E-value=1.8e+02 Score=21.59 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred eeEeecCceeeecCCCCHHH-HHHHHHCCCcEEEEc
Q psy15044 18 FSWIVPDELAAMACPDTRDH-LKTLSYRGVCHLVSL 52 (154)
Q Consensus 18 ~~~i~~~~~~~~~~p~~~~~-~~~l~~~gi~~Vv~l 52 (154)
..-|+.|.=|+++.- .++ ...|+..||+.||-=
T Consensus 130 ~~IIVaG~NFGcGSS--REhA~~AL~~~GI~aVIA~ 163 (246)
T PLN00072 130 YSIIIGGENFGCGSS--REHAPVALGAAGAKAVVAE 163 (246)
T ss_pred ceEEEecCcccCCCc--HHHHHHHHHHcCCCEEEEC
Confidence 455566666666554 344 345889999999853
No 243
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=23.49 E-value=3.1e+02 Score=20.78 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
..+.+.++.+...|-++.+||..+-
T Consensus 244 ~~~~~i~~~a~~~gi~~~~~~~~es 268 (307)
T TIGR01927 244 AKLRDLAQKAHRLGLQAVFSSVFES 268 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEECccch
Confidence 3444455555567889999997753
No 244
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=23.48 E-value=1.4e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=25.2
Q ss_pred EEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q psy15044 103 GVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLA 139 (154)
Q Consensus 103 lVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~ 139 (154)
+++..+|-+ +|.++|+.+.. .+++.+++.+.....
T Consensus 41 ~fDli~GTS-tGgiiA~~la~-~~~~~~e~~~~y~~~ 75 (308)
T cd07211 41 LFDYICGVS-TGAILAFLLGL-KKMSLDECEELYRKL 75 (308)
T ss_pred hcCEEEecC-hhHHHHHHHhc-ccccHHHHHHHHHHH
Confidence 467778865 77787777644 589999998877543
No 245
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.43 E-value=1.2e+02 Score=23.61 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=19.1
Q ss_pred hCCCcEEEeCCCCCChHHHHHHHHHHHHcCCC
Q psy15044 97 QKGEAVGVHCRSGRGRTGVMAACYLVYFLGMT 128 (154)
Q Consensus 97 ~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~ 128 (154)
..+.+++++|..| .||. .++..| ...|.+
T Consensus 312 ~~~~~IvvyC~~G-~rS~-~Aa~~L-~~~G~~ 340 (355)
T PRK05597 312 SAGDEVVVYCAAG-VRSA-QAVAIL-ERAGYT 340 (355)
T ss_pred CCCCeEEEEcCCC-HHHH-HHHHHH-HHcCCC
Confidence 3457899999998 4776 444444 446663
No 246
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=23.23 E-value=1.5e+02 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCCcEEEEcCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEE 55 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~ 55 (154)
...++.+++.|++++++....
T Consensus 35 ~~~~~~~~~~Gvttiv~~~~~ 55 (293)
T cd00530 35 KEELKRFRAHGGRTIVDATPP 55 (293)
T ss_pred HHHHHHHHHcCCCeEEEcCCc
Confidence 345667777888888888864
No 247
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=23.12 E-value=1.2e+02 Score=18.54 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHH
Q psy15044 90 EFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAIT 134 (154)
Q Consensus 90 ~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~ 134 (154)
+++......+.+|+|++..|..=.|++.+.-- ++++-+++|.+
T Consensus 5 ~~L~~~~~~~~~V~V~lr~~r~~~G~L~~fD~--hmNlvL~d~~E 47 (87)
T cd01720 5 SLLTQAVKNNTQVLINCRNNKKLLGRVKAFDR--HCNMVLENVKE 47 (87)
T ss_pred HHHHHHHcCCCEEEEEEcCCCEEEEEEEEecC--ccEEEEcceEE
Confidence 45566666678999999999877776644332 23444555533
No 248
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=23.05 E-value=1.7e+02 Score=18.29 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEeCC
Q psy15044 77 YHAPTMRQVIKFIEFCVNCRQKGEAVGVHCR 107 (154)
Q Consensus 77 ~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~ 107 (154)
+...+...+..+++.+.+..++|.+|.|+..
T Consensus 54 fNTSSsk~l~~i~~~Le~~~~~g~~V~v~Wy 84 (99)
T PF09345_consen 54 FNTSSSKALMDIFDLLEDAAQKGGKVTVNWY 84 (99)
T ss_pred EecHhHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3444566688888888888788888888754
No 249
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.94 E-value=2e+02 Score=17.75 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHHHcCCCHH
Q psy15044 86 IKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPE 130 (154)
Q Consensus 86 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~ 130 (154)
..+.++++...+.|.++++--..+ +||..-.+..| ...|++..
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCC
Confidence 345677777777788888865554 67766666666 44777543
No 250
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=22.93 E-value=1.3e+02 Score=22.99 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHhCCCcEEEeCCCCCChHHHHHHHHHHH--HcCCCHHHHHHHHHHhCC
Q psy15044 91 FCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY--FLGMTPERAITTLRLARP 141 (154)
Q Consensus 91 ~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~--~~g~~~~~a~~~~r~~Rp 141 (154)
.+....+.+.+|.+||. |...++...=.. ...++..++++.++..|.
T Consensus 120 ~~~~~~~~g~~v~~H~E----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~ 168 (337)
T cd01302 120 TFLEIASRGGPVMVHAE----RAAQLAEEAGANVHIAHVSSGEALELIKFAKN 168 (337)
T ss_pred HHHHHHhcCCeEEEeHH----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHH
Confidence 33444445789999998 443332221100 125688888888876653
No 251
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=22.91 E-value=95 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.459 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCChHHHH
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSGRGRTGVM 116 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G~~Rsg~~ 116 (154)
.......+..++.|++||+.-.+ ++.+
T Consensus 81 s~vaa~~~~rpg~iv~HcSga~~-~~il 107 (289)
T COG5495 81 SGVAATSLNRPGTIVAHCSGANG-SGIL 107 (289)
T ss_pred HHHHHhcccCCCeEEEEccCCCc-hhhh
Confidence 34444555566899999986543 4433
No 252
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=22.88 E-value=1.1e+02 Score=21.72 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHHHHhCCCcEEEeCCCC
Q psy15044 92 CVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 92 i~~~~~~~~~vlVHC~~G 109 (154)
+.-+.+.+.||.+||..+
T Consensus 114 ~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 114 LELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHhCCCeEEEeeCc
Confidence 344445568999999755
No 253
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=22.87 E-value=92 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 87 KFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 87 ~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
.+.+.+..+.+.|-++.+||..+-
T Consensus 256 ~a~~i~~~a~~~gi~~~~g~~~es 279 (321)
T PRK15129 256 EALALATEARAQGFALMLGCMLCT 279 (321)
T ss_pred HHHHHHHHHHHcCCcEEEecchHH
Confidence 334444445566889999998543
No 254
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=22.82 E-value=1.5e+02 Score=23.71 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=31.8
Q ss_pred EeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q psy15044 71 LIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRG 111 (154)
Q Consensus 71 ~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 111 (154)
+.|+.|....+...+.+.+..|..+.++|..|++-.+-|+-
T Consensus 24 NvP~~dG~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGRP 64 (395)
T COG0126 24 NVPVDDGKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRP 64 (395)
T ss_pred CCcccCCeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCCC
Confidence 45777766667777999999999999988677777776653
No 255
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=22.69 E-value=1.8e+02 Score=17.12 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
+....+-++...+.++|-.|+.+=.-|.|+|.
T Consensus 27 eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 27 EHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 44455566666666788899999999999996
No 256
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=22.66 E-value=1.5e+02 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCcEEEeCCCCCChHH
Q psy15044 90 EFCVNCRQKGEAVGVHCRSGRGRTG 114 (154)
Q Consensus 90 ~~i~~~~~~~~~vlVHC~~G~~Rsg 114 (154)
+.+......+.||.+..++|++=|.
T Consensus 6 ~av~~~~~~~~~v~~~LSGGlDSs~ 30 (269)
T cd01991 6 DAVRRRLRSDVPVGVLLSGGLDSSL 30 (269)
T ss_pred HHHHHHhccCCceEEeecccHHHHH
Confidence 3445545677899999999998443
No 257
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.63 E-value=1.5e+02 Score=22.04 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=19.5
Q ss_pred ceeeecCCCC-HHHHHHHHHCCCcEEEEcCC
Q psy15044 25 ELAAMACPDT-RDHLKTLSYRGVCHLVSLSE 54 (154)
Q Consensus 25 ~~~~~~~p~~-~~~~~~l~~~gi~~Vv~l~~ 54 (154)
.++.+..|.+ ..+.+.+++.||+.+|+=..
T Consensus 176 ~iia~~gPfs~e~n~al~~~~~i~~lVtK~S 206 (256)
T TIGR00715 176 RIIAMRGPFSEELEKALLREYRIDAVVTKAS 206 (256)
T ss_pred cEEEEeCCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 3566666654 45566777788888876544
No 258
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=22.59 E-value=2.2e+02 Score=24.23 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~ 119 (154)
+...++++.+.+..++||+|+|-|-+ .||+--++..
T Consensus 386 ~~e~~l~~~I~~tl~~gG~VLIP~fa-vGR~QEll~~ 421 (630)
T TIGR03675 386 EAEKELIKVVNETIKRGGKVLIPVFA-VGRAQEVMLV 421 (630)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEech-hHHHHHHHHH
Confidence 44678889999999999999999988 6898766543
No 259
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.45 E-value=84 Score=15.88 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHcC
Q psy15044 113 TGVMAACYLVYFLG 126 (154)
Q Consensus 113 sg~~~a~~l~~~~g 126 (154)
.|.++++|+.+.+|
T Consensus 19 ~Glfv~Ay~QY~Rg 32 (37)
T PF02529_consen 19 AGLFVAAYLQYRRG 32 (37)
T ss_dssp HHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHhcc
Confidence 46777788766544
No 260
>PHA02540 61 DNA primase; Provisional
Probab=22.41 E-value=2e+02 Score=22.42 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=28.3
Q ss_pred cEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 101 AVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
....||-+ .|-+|- +.-+||...+++..||+..+.+..
T Consensus 53 ~~~yhCFg-CGa~Gd-~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHN-CGYHRP-FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecC-CCCCCC-HHHHHHHhcCCChHHHHHHHHHHh
Confidence 57889974 355663 456888989999999999775544
No 261
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=22.37 E-value=3.6e+02 Score=20.56 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHC-CCcEEEEcCCCCcC--CCcccCCCCeE-EEeecCCCCCCC-HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCh
Q psy15044 38 LKTLSYR-GVCHLVSLSEECIP--DGIERYEPLNW-ILIPVEEYHAPT-MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGR 112 (154)
Q Consensus 38 ~~~l~~~-gi~~Vv~l~~~~~~--~~~~~~~~~~~-~~~p~~d~~~p~-~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 112 (154)
++.|++. ++...+-.+...+. .......++.. +.+.+.+ ...+ ......++..+.+..++..|=+|||. | +|
T Consensus 20 ~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~-g-d~ 96 (365)
T TIGR00236 20 IRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQ-G-DT 96 (365)
T ss_pred HHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEe-C-Cc
Confidence 4556554 66666666655411 11111234432 2333333 2222 23344444445555555567677776 3 45
Q ss_pred HHHHHHHHHHHHcCC
Q psy15044 113 TGVMAACYLVYFLGM 127 (154)
Q Consensus 113 sg~~~a~~l~~~~g~ 127 (154)
..+++++......|+
T Consensus 97 ~~~la~a~aa~~~~i 111 (365)
T TIGR00236 97 TTTLAGALAAFYLQI 111 (365)
T ss_pred hHHHHHHHHHHHhCC
Confidence 555555554444443
No 262
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=22.28 E-value=3.5e+02 Score=20.49 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcc-----------------cCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIE-----------------RYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCR 96 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~-----------------~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~ 96 (154)
..++..|++.|.+.+|++.... ..... ...++..+.+.|......+......+.+.+....
T Consensus 57 ~~~i~~lk~~G~kViiS~GG~~-g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 57 KSDIAALRAAGGDVIVSFGGAS-GTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred HHHHHHHHHcCCeEEEEecCCC-CCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 4568899999999999998765 21111 1247777777776544333222333444444333
No 263
>PRK10812 putative DNAse; Provisional
Probab=22.03 E-value=1.9e+02 Score=21.44 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCcEEEeCCCCCC
Q psy15044 90 EFCVNCRQKGEAVGVHCRSGRG 111 (154)
Q Consensus 90 ~~i~~~~~~~~~vlVHC~~G~~ 111 (154)
..+.-+.+.+.||.+||..+..
T Consensus 115 ~ql~lA~e~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 115 HHIQIGRELNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHhCCCeEEEeeCchH
Confidence 3334344456889999876543
No 264
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=21.97 E-value=5e+02 Score=22.06 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeC-CCCCChHHHHH-HHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHC-RSGRGRTGVMA-ACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC-~~G~~Rsg~~~-a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
+.+.+--+.+.+++.+|+.+||+- ..|+.+-..-+ .-.+....+++.++|-++++..+
T Consensus 518 d~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 518 DRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 346666777888888888899954 34443332211 12233445778888877776544
No 265
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=21.94 E-value=1.2e+02 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCcEEEeCCCCCChHHHHHH--HHHHHHcCCCHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVMAA--CYLVYFLGMTPERA 132 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a--~~l~~~~g~~~~~a 132 (154)
.+|++|--.+|-|.|-+++. +||+...|++++.+
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~I 57 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSI 57 (721)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHe
Confidence 47999999999998887775 56665567776443
No 266
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.88 E-value=1.1e+02 Score=17.92 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=13.2
Q ss_pred cEEEeCCCCCChHHHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAACY 120 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~ 120 (154)
+++|-|.+|.+=|. ++..-
T Consensus 1 kilvvC~~G~~tS~-ll~~k 19 (86)
T cd05563 1 KILAVCGSGLGSSL-MLKMN 19 (86)
T ss_pred CEEEECCCCccHHH-HHHHH
Confidence 37888999998554 54433
No 267
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.77 E-value=30 Score=17.96 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.9
Q ss_pred CCCcEEEeCCCCC
Q psy15044 98 KGEAVGVHCRSGR 110 (154)
Q Consensus 98 ~~~~vlVHC~~G~ 110 (154)
.+|.|+|-|--|.
T Consensus 7 p~GVIlVF~lVgl 19 (43)
T PF08114_consen 7 PGGVILVFCLVGL 19 (43)
T ss_pred CCCeeeehHHHHH
Confidence 4689999999886
No 268
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=21.59 E-value=2.1e+02 Score=20.38 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCC
Q psy15044 89 IEFCVNCRQKGEAVGVHCRSG 109 (154)
Q Consensus 89 ~~~i~~~~~~~~~vlVHC~~G 109 (154)
...+..+.+.|.||.+||...
T Consensus 111 ~~~~~~a~~~~~pv~iH~~~~ 131 (252)
T TIGR00010 111 RAQLQLAEELNLPVIIHARDA 131 (252)
T ss_pred HHHHHHHHHhCCCeEEEecCc
Confidence 333444455678999999743
No 269
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=21.50 E-value=2.1e+02 Score=17.63 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCChHHHHHHH
Q psy15044 99 GEAVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 99 ~~~vlVHC~~G~~Rsg~~~a~ 119 (154)
+..++|+-..|.|.|.++-.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 567999999999998644443
No 270
>KOG3354|consensus
Probab=21.33 E-value=1.4e+02 Score=20.81 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=23.2
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy15044 72 IPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGR 110 (154)
Q Consensus 72 ~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 110 (154)
+|..|.+ -..++.++-..+...+..+..+++-|++=+
T Consensus 59 ipLnD~D--R~pWL~~i~~~~~~~l~~~q~vVlACSaLK 95 (191)
T KOG3354|consen 59 IPLNDDD--RWPWLKKIAVELRKALASGQGVVLACSALK 95 (191)
T ss_pred CCCCccc--ccHHHHHHHHHHHHHhhcCCeEEEEhHHHH
Confidence 3554442 234566666666666667788999998754
No 271
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.32 E-value=1.4e+02 Score=21.18 Aligned_cols=31 Identities=32% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCCCCChHHHHHHHHHH--HHcCCCHHHHHHHHHH
Q psy15044 106 CRSGRGRTGVMAACYLV--YFLGMTPERAITTLRL 138 (154)
Q Consensus 106 C~~G~~Rsg~~~a~~l~--~~~g~~~~~a~~~~r~ 138 (154)
|..|.+..- +-.+|- +..+++.+||++.+..
T Consensus 161 ~a~G~~~~~--~~~~L~~~~~~~ls~eeai~l~~~ 193 (213)
T cd03753 161 KAIGSGSEG--AQSSLQEKYHKDMTLEEAEKLALS 193 (213)
T ss_pred EEECCCcHH--HHHHHHhhccCCCCHHHHHHHHHH
Confidence 445655443 333432 2347899999987754
No 272
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=21.27 E-value=1.7e+02 Score=18.20 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=17.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Q psy15044 119 CYLVYFLGMTPERAITTLRLARP 141 (154)
Q Consensus 119 ~~l~~~~g~~~~~a~~~~r~~Rp 141 (154)
..+|...|+++++.++.+..++.
T Consensus 67 lVlL~~~gv~l~dV~~eL~~R~~ 89 (92)
T COG0140 67 LVLLAAQGLSLEDVLRELERRHG 89 (92)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhh
Confidence 34556679999999999977653
No 273
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.27 E-value=1.3e+02 Score=17.99 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHCCCcEEEEc
Q psy15044 31 CPDTRDHLKTLSYRGVCHLVSL 52 (154)
Q Consensus 31 ~p~~~~~~~~l~~~gi~~Vv~l 52 (154)
.|...+-++.+.+.|++.|+-+
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEE
Confidence 4433444555555565555443
No 274
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.25 E-value=92 Score=19.27 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCChHHHHHHHH---HHHHcCCC
Q psy15044 100 EAVGVHCRSGRGRTGVMAACY---LVYFLGMT 128 (154)
Q Consensus 100 ~~vlVHC~~G~~Rsg~~~a~~---l~~~~g~~ 128 (154)
.+|++-|-+|.|-| +++..- ++..+|++
T Consensus 2 ~KIL~aCG~GvgSS-~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSS-TMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHH-HHHHHHHHHHHHHcCCC
Confidence 36899999999855 454433 23344654
No 275
>PRK02947 hypothetical protein; Provisional
Probab=21.22 E-value=2.5e+02 Score=20.54 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHH
Q psy15044 82 MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a 118 (154)
.+.+.++.+.+.+.+.+++.|++. |.|.|+.++.
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA~ 56 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILAE 56 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHH
Confidence 345778888888888888888875 5566765443
No 276
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=21.10 E-value=1.9e+02 Score=19.76 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=19.5
Q ss_pred EeecCceeeecCCCCHHH-HHHHHHCCCcEEEEcC
Q psy15044 20 WIVPDELAAMACPDTRDH-LKTLSYRGVCHLVSLS 53 (154)
Q Consensus 20 ~i~~~~~~~~~~p~~~~~-~~~l~~~gi~~Vv~l~ 53 (154)
-|+.|.=|+++.. .++ ...++..||+.||-=.
T Consensus 50 iiVaG~NFG~GSS--RE~A~~al~~~Gi~aVIA~S 82 (156)
T TIGR02084 50 IIVAGENFGCGSS--REHAPIAIKASGISCVIAKS 82 (156)
T ss_pred EEEccCcccCCCc--HHHHHHHHHHhCCCEEEEeh
Confidence 3445555555443 333 3458889999998533
No 277
>PRK05667 dnaG DNA primase; Validated
Probab=21.09 E-value=1.3e+02 Score=25.20 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.7
Q ss_pred cEEEeCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy15044 101 AVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLAR 140 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~~R 140 (154)
+=..||.+ .|.+|-+ .-++|...|++..+|++.+...-
T Consensus 55 k~~~~CF~-Cg~~Gd~-i~fv~~~~~~sf~eAv~~La~~~ 92 (580)
T PRK05667 55 KQFYHCFG-CGAGGDV-IKFLMEYEGLSFVEAVEELADRA 92 (580)
T ss_pred CCeEEECC-CCCCCCH-HHHHHHHhCCCHHHHHHHHHHHh
Confidence 34688874 3556644 44566778999999999996543
No 278
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=21.06 E-value=1.6e+02 Score=24.65 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHH
Q psy15044 82 MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMA 117 (154)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~ 117 (154)
.+.-.++++.+.+..+.||+|||=-. ..||+--++
T Consensus 391 ~eaE~~L~~vi~~t~~rGGKvLIP~f-AVGR~QEvM 425 (637)
T COG1782 391 EEAEKELIKVINDTLKRGGKVLIPVF-AVGRSQEVM 425 (637)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEee-eccccceeh
Confidence 34578889999999999999999854 468886443
No 279
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.92 E-value=1.5e+02 Score=20.91 Aligned_cols=34 Identities=26% Similarity=0.155 Sum_probs=20.0
Q ss_pred eCCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 105 HCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 105 HC~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
+|..|.+...+...+--.+..+++.+||++.++.
T Consensus 156 ~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~ 189 (211)
T cd03756 156 ATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALK 189 (211)
T ss_pred EEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 4556655554333222223358999999987754
No 280
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.89 E-value=1.6e+02 Score=16.44 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeC
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHC 106 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC 106 (154)
..+..++-++-..+.+.+++++|=
T Consensus 19 iliis~~f~lI~~l~qq~~~y~HH 42 (61)
T PF06692_consen 19 ILIISFVFFLITSLGQQGNTYVHH 42 (61)
T ss_pred HHHHHHHHHHHhhhccCCCeeEEe
Confidence 334444444444556668999884
No 281
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.87 E-value=3.4e+02 Score=19.70 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCcCCCcccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEE-----eCCCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGV-----HCRSG 109 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlV-----HC~~G 109 (154)
.+.++.|+++||++|--.-.-. .+. ...|.....+--.|...-+ ..++.++++.+.+.|-.|++ |++.+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~-~~~--~~~gY~~~d~~~vd~~~Gt---~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE-SPN--GYHGYDPSDYYAVDPRFGT---MEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE-SSS--STTTTSESEEEEESTTTBH---HHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred HHhhHHHHHcCCCceecccccc-ccc--ccccccceeeeccccccch---hhhhhhhhhccccccceEEEeeeccccccc
Confidence 4567899999999987664333 111 2223222222111211112 34555666666666666554 76555
Q ss_pred C
Q psy15044 110 R 110 (154)
Q Consensus 110 ~ 110 (154)
.
T Consensus 81 ~ 81 (316)
T PF00128_consen 81 H 81 (316)
T ss_dssp S
T ss_pred c
Confidence 3
No 282
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=20.78 E-value=2.7e+02 Score=18.48 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy15044 107 RSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138 (154)
Q Consensus 107 ~~G~~Rsg~~~a~~l~~~~g~~~~~a~~~~r~ 138 (154)
.+|.+-.+.--..-+|+..+++.++|-....+
T Consensus 79 R~GLD~~ak~EI~~IM~~~~v~FDeARliy~~ 110 (128)
T PF09435_consen 79 RAGLDDAAKREIRRIMKRRRVNFDEARLIYTE 110 (128)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56666666666777899999999999765543
No 283
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=20.76 E-value=1.5e+02 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.025 Sum_probs=18.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHH
Q psy15044 98 KGEAVGVHCRSGRGRTGVMAACYL 121 (154)
Q Consensus 98 ~~~~vlVHC~~G~~Rsg~~~a~~l 121 (154)
..|-|.|+|..|+|-|.+....-+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlal 43 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQAL 43 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHH
Confidence 347899999999998876554443
No 284
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=20.70 E-value=1.1e+02 Score=22.99 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=21.7
Q ss_pred cccCCCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEeCC
Q psy15044 61 IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCR 107 (154)
Q Consensus 61 ~~~~~~~~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~ 107 (154)
.++.-|+.|+ -|++.+ + +.++++.+....+-.+||+||..
T Consensus 230 lFe~LG~~Y~-GPiDGH---d---l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 230 LFEELGFDYI-GPIDGH---D---LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCHHCT-EEE-EEEETT-------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHcCCeEE-eccCCC---C---HHHHHHHHHHHhcCCCCEEEEEe
Confidence 3444466664 466444 3 33444555555555689999963
No 285
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=20.58 E-value=1.4e+02 Score=18.12 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCcEEEEcCC
Q psy15044 35 RDHLKTLSYRGVCHLVSLSE 54 (154)
Q Consensus 35 ~~~~~~l~~~gi~~Vv~l~~ 54 (154)
++-...+.+.||+.|+|+++
T Consensus 76 ~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 76 QEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHHHHHTT-SEEEEESS
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 45567788899999999875
No 286
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=20.55 E-value=93 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=7.4
Q ss_pred CCcEEEeCCCCCC
Q psy15044 99 GEAVGVHCRSGRG 111 (154)
Q Consensus 99 ~~~vlVHC~~G~~ 111 (154)
+.||.+||.....
T Consensus 124 ~~pv~iH~r~a~~ 136 (255)
T PF01026_consen 124 NLPVSIHCRKAHE 136 (255)
T ss_dssp TCEEEEEEESHHH
T ss_pred CCcEEEecCCcHH
Confidence 4566666665543
No 287
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.51 E-value=3.5e+02 Score=20.66 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCChHHHHHHH
Q psy15044 83 RQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAAC 119 (154)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~ 119 (154)
..+.++.+.+......+.||+|.--.|.|.+-+.-++
T Consensus 13 ~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~i 49 (326)
T PRK11608 13 NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRL 49 (326)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH
Confidence 3567778888888788899999999999998644333
No 288
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.42 E-value=3.1e+02 Score=19.16 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCcEEEeCC--CCCChHHHHHHHHHHH
Q psy15044 90 EFCVNCRQKGEAVGVHCR--SGRGRTGVMAACYLVY 123 (154)
Q Consensus 90 ~~i~~~~~~~~~vlVHC~--~G~~Rsg~~~a~~l~~ 123 (154)
+.++...+.|+.++||-- .|.++-- .+.-||..
T Consensus 35 ~~v~~~~~~gK~vfVHiDli~Gl~~D~-~~i~~L~~ 69 (175)
T PF04309_consen 35 DIVKRLKAAGKKVFVHIDLIEGLSRDE-AGIEYLKE 69 (175)
T ss_dssp HHHHHHHHTT-EEEEECCGEETB-SSH-HHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEehhcCCCCCCH-HHHHHHHH
Confidence 334444566789999976 5665542 33445433
No 289
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.09 E-value=1e+02 Score=19.53 Aligned_cols=17 Identities=12% Similarity=0.432 Sum_probs=12.2
Q ss_pred cEEEeCCCCCChHHHHHH
Q psy15044 101 AVGVHCRSGRGRTGVMAA 118 (154)
Q Consensus 101 ~vlVHC~~G~~Rsg~~~a 118 (154)
.++.-|.+|.+-| .++.
T Consensus 3 ~IlLvC~aGmSTS-lLV~ 19 (102)
T COG1440 3 KILLVCAAGMSTS-LLVT 19 (102)
T ss_pred eEEEEecCCCcHH-HHHH
Confidence 6888899999744 4443
No 290
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=20.07 E-value=1.6e+02 Score=16.08 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=7.8
Q ss_pred cCCCHHHHHHHH
Q psy15044 125 LGMTPERAITTL 136 (154)
Q Consensus 125 ~g~~~~~a~~~~ 136 (154)
.|+|.-+|++.+
T Consensus 26 qGmSsgEAI~~V 37 (51)
T PF03701_consen 26 QGMSSGEAIAIV 37 (51)
T ss_pred hcccHHHHHHHH
Confidence 566666666655
Done!