RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15044
(154 letters)
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 64.2 bits (157), Expect = 6e-14
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 45 GVCHLVSLSEECIPDGIERYEPLNWILIPVEEYH----APTMRQVIKFIEFCVNCRQKGE 100
G+ H+++++ E + L +P+++ +P + ++FIE + KG
Sbjct: 26 GITHVINVTNEVPNYNGSDFTYLG---VPIDDNTETKISPYFPEAVEFIE---DAESKGG 79
Query: 101 AVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPG 142
V VHC++G R+ + YL+ M+ A ++ RP
Sbjct: 80 KVLVHCQAGVSRSATLIIAYLMKTRNMSLNDAYDFVKDRRPI 121
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 60.4 bits (147), Expect = 2e-12
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 45 GVCHLVSLSEECIPDGIERYEPLNWILIPVEEYH----APTMRQVIKFIEFCVNCRQKGE 100
G+ H+++++ E + + ++ IPVE+ H + + + ++FI+ + QKG
Sbjct: 18 GITHVINVTREVPNSNL--NSGILYLGIPVEDNHETNISKYLPEAVEFID---DAIQKGG 72
Query: 101 AVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPG 142
V VHC++G R+ + YL+ ++ A + ++ RP
Sbjct: 73 KVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPI 114
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 60.5 bits (147), Expect = 4e-12
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 59 DGIERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118
IE + + + +P+ + P + + K ++F KG+ V VHC+ G GR+G + A
Sbjct: 65 VAIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIA 124
Query: 119 CYLVYFLG-MTPERAITTLRLARPG 142
YL+ + G + AI R RPG
Sbjct: 125 AYLMLYGGLSLADEAIAVKRRRRPG 149
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 59 DGIERY---EPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGV 115
DG++ E ++++ IP+ ++ PT+ Q+ + I + + ++V VHC GRGR+ +
Sbjct: 132 DGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVL 191
Query: 116 MAACYLVY 123
+ A YL+
Sbjct: 192 VLAAYLLC 199
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 45.7 bits (109), Expect = 5e-07
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 35 RDHLKTLSYRGVCHLVSLSEECIPDGIERYEPLNWILIPVE-EYHAPTMRQVIKFIEFCV 93
++ LK L G+ H++++++E + N++ +P+ + + ++F
Sbjct: 20 KELLKKL---GITHVLNVAKEVPNE-NLFLSDFNYLYVPILDLPSQDISKYFDEAVDFID 75
Query: 94 NCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARP 141
+ R+KG V VHC +G R+ + YL+ LG++ A ++ RP
Sbjct: 76 DAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP 123
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 44.9 bits (106), Expect = 3e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 79 APTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL 138
APT+ V ++ N + AV VHC +G GR V+A+ L+ F GM P AI +R
Sbjct: 150 APTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEF-GMDPIDAIVFIRD 208
Query: 139 ARPGSL 144
R G++
Sbjct: 209 RRKGAI 214
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 41.5 bits (98), Expect = 3e-05
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSL 144
E + VHC +G GR ++ A LV + GM P A+ +R R G++
Sbjct: 98 PETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI 143
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 37.4 bits (87), Expect = 0.001
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 72 IPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY 123
P E A + ++++ + + V +HC +G+ RTG++AA Y
Sbjct: 114 FPTREDAAERLVELLQLLA-----DAENGPVLIHCTAGKDRTGLVAALYRKL 160
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 82 MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVM-AACYLVYFLGMTP-----ERAITT 135
+ ++++ ++ +N + V VHC +G GRTG A L+ L +
Sbjct: 22 ILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKE 81
Query: 136 LRLARPGSLE 145
LR RPG ++
Sbjct: 82 LRSQRPGMVQ 91
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 82 MRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVM-AACYLVYFLGMTP-----ERAITT 135
+ ++++ ++ +N + V VHC +G GRTG A L+ L +
Sbjct: 22 ILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKE 81
Query: 136 LRLARPGSLE 145
LR RPG ++
Sbjct: 82 LRSQRPGMVQ 91
>gnl|CDD|203311 pfam05706, CDKN3, Cyclin-dependent kinase inhibitor 3 (CDKN3).
This family consists of cyclin-dependent kinase
inhibitor 3 or kinase associated phosphatase proteins
from several mammalian species. The cyclin-dependent
kinase (Cdk)-associated protein phosphatase (KAP) is a
human dual specificity protein phosphatase that
dephosphorylates Cdk2 on threonine 160 in a
cyclin-dependent manner.
Length = 168
Score = 34.2 bits (78), Expect = 0.011
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 47 CHLVSLSEECIPDGIERYEPLNWILI--PVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGV 104
C LS+ +P+ ++ Y+ I P+ + P + + +E C + +
Sbjct: 79 CTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLI 138
Query: 105 HCRSGRGRTGVMAACYLVYFL-GMTPERAI 133
HC G GR+ ++AAC L+Y ++PE+AI
Sbjct: 139 HCYGGLGRSCLVAACLLLYLSDTISPEQAI 168
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 34.9 bits (80), Expect = 0.013
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 34 TRDHLKTLSYRGVCHLVSLSEECIPDGIERYEP----------LNWILIPVEEYHAPTMR 83
T + LK L +G +V L E + D Y+ + + IPVE AP+
Sbjct: 270 TEEGLKWLLEKGFKTIVDLRAEIVKDNF--YQAAVDDAISSGKIEVVKIPVEVRTAPSAE 327
Query: 84 QVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRLA 139
QV KF + +K + +H + G RT M + + Y MT R+ L
Sbjct: 328 QVEKFASLVSDSSKK--PIYLHSKEGVWRTSAMVSRWKQY---MT--RSAERLLGQ 376
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 33.2 bits (77), Expect = 0.021
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 78 HAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118
A R +++ + V HC +G+ RTGV AA
Sbjct: 108 DAAAYRALLELL------ADPDGPVLFHCTAGKDRTGVAAA 142
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 32.2 bits (74), Expect = 0.063
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 104 VHCRSGRGRTGV-MAACYLVYFLG----MTPERAITTLRLARPGSLE 145
VHC +G GRTG +A L+ L + + + LR RPG ++
Sbjct: 171 VHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 32.3 bits (74), Expect = 0.064
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 88 FIEFCVNCRQKGEAVG-----VHCRSGRGRTGVM-AACYLVYFL----GMTPERAITTLR 137
++ R+ VHC +G GRTG A L+ L + + + LR
Sbjct: 152 LLDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQIVKELR 211
Query: 138 LARPGSLE 145
RPG ++
Sbjct: 212 SQRPGMVQ 219
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 31.0 bits (70), Expect = 0.20
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 61 IERYEPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAA 118
I ++ +NW+ +++ P +R + + I + + + VHC +G GRTG A
Sbjct: 185 IHHFQYINWV-----DFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIA 237
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 29.5 bits (67), Expect = 0.55
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 85 VIKFIEFCVNCRQKGEA-VGVHCRSGRGRTGVMAACYLVY-----FLGMTPERAITTLRL 138
++ I + + VHC +G GRTG A ++ + + LR
Sbjct: 179 ILDLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 238
Query: 139 ARPGS 143
RPG
Sbjct: 239 QRPGM 243
>gnl|CDD|129801 TIGR00718, sda_alpha, L-serine dehydratase, iron-sulfur-dependent,
alpha subunit. This enzyme is also called serine
deaminase. L-serine dehydratase converts serine into
pyruvate in the gluconeogenesis pathway from serine.
This model describes the alpha chain of an
iron-sulfur-dependent L-serine dehydratase, found in
Bacillus subtilis. A fairly deep split in a UPGMA tree
separates members of this family of alpha chains from
the homologous region of single chain forms such as
found in Escherichia coli. This family of enzymes is not
homologous to the pyridoxal phosphate-dependent
threonine deaminases and eukaryotic serine deaminases
[Energy metabolism, Amino acids and amines, Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 294
Score = 28.8 bits (64), Expect = 0.94
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 70 ILIPVEEYHAPTMRQVIKF------IEFCV--NCRQKGEAVGVHCRSGRGRTGVMAACYL 121
+L +E Q+I F F + N G A G C++ G MAA +
Sbjct: 125 MLFAAKEKLNFDREQIINFFFTAGAFGFVIAKNASFAGAAGG--CQAECGSASAMAAAAI 182
Query: 122 VYFLGMTPERAI 133
V G TPE+A
Sbjct: 183 VEMAGGTPEQAA 194
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 27.7 bits (62), Expect = 2.0
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 31/122 (25%)
Query: 15 PRNFSWIVPDELAAMACPDTRDH--LKTLSYRGVCHLVSLSEE---------CIPDGIER 63
P NFS + L + P + L++L + ++SLS E + I+
Sbjct: 4 PLNFSPVES-GLYRSSYPRANNFSFLRSLRLK---TIISLSPEPYPQDNLQFLESEHIKL 59
Query: 64 Y------EPLNWILIPVEEYHAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMA 117
Y ++ IP +R+ +K + +N + V +HC G+ RTG++
Sbjct: 60 YHIHMEGNKDPFVNIPSHL-----LRRALKLL---LN--KDNYPVLIHCNRGKHRTGLVI 109
Query: 118 AC 119
C
Sbjct: 110 GC 111
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 27.8 bits (62), Expect = 2.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 72 IPVEEY---HAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACY 120
I VE +AP + V+K + F V +K +G+ R+G G++ ++ A +
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEK---IGIVGRTGAGKSTLILALF 55
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 28.0 bits (62), Expect = 2.5
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 99 GEAVGVHCRSGRGRTGVMAACYLVYFLGMTPERAITTLRL-ARPGSLECH 147
G AVGV CR+GR G + A + V LG T R A +L H
Sbjct: 85 GRAVGVMCRNGR---GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAH 131
>gnl|CDD|237759 PRK14589, PRK14589, tRNA pseudouridine synthase ACD; Provisional.
Length = 265
Score = 27.4 bits (61), Expect = 3.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 108 SGRGRTGVMAACYLVYFLGMTPERAITTLRLARPGSLEC 146
+GR GV A ++ F PERA+ L P + C
Sbjct: 51 AGRTDRGVHARGQVLAFSTHKPERAVEALNGQLPPDIWC 89
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 27.3 bits (60), Expect = 3.4
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 61 IERYEPLNWILIPVEEYHAPT-MRQVIKFIEFCVNCRQKGEA-----------VGVHCRS 108
I ++ W E P+ IKFI+ R+K + VHC
Sbjct: 184 ISHFQCSEWF-----EDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSD 238
Query: 109 GRGRTGVMAA 118
G G+TG+ A
Sbjct: 239 GVGKTGIFCA 248
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 27.5 bits (60), Expect = 3.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 104 VHCRSGRGRTGVMAACYLV 122
+HC G GRTG MAA ++
Sbjct: 471 IHCLGGVGRTGTMAAALVL 489
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 27.0 bits (60), Expect = 3.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 78 HAPTMRQVIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVMAACYLVY 123
V+K + VN GE V + SG G++ ++ + Y Y
Sbjct: 16 QGGVRLPVLKNVSLTVN---AGECVALSGPSGAGKSTLLKSLYANY 58
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 26.6 bits (58), Expect = 5.7
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 82 MRQ-VIKFIEFCVNCRQKGEAVGVHCRSGRGRTGVM 116
MRQ + F + C C+ KG+ + C++ +G+T ++
Sbjct: 170 MRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYIL 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.453
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,088,476
Number of extensions: 716164
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 33
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)