BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15045
(363 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345490453|ref|XP_001602436.2| PREDICTED: TAR DNA-binding protein 43-like [Nasonia vitripennis]
Length = 476
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/330 (43%), Positives = 194/330 (58%), Gaps = 23/330 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ +E+P+EDD T+LL+TL AQ+P GLKY+ ESR R V+L +G L+
Sbjct: 3 YIQVAEDEGEEPIELPTEDDSTLLLTTLSAQFPGTCGLKYRNPESRAMRGVRLVEGRLHP 62
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW VY+C F D + +S ++KR ++ TDL+VLG+PW T+
Sbjct: 63 PENGWGKAVYFCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
+L+EYFE FG + A VK D +G+SKGFGFIRF S+ES L+ + ++H I R CDV++
Sbjct: 119 QNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKV 178
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELD 237
P S K G + V KVFVG T DLT DLR++F +G V DV IPKPFR F+FVTF
Sbjct: 179 PNS-KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPFRAFSFVTFLDP 237
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSR----SPMSNSRQY 293
VA+SL G+ IK V V A PK + N R N NN N R+R P+ N+ Q
Sbjct: 238 EVAQSLCGEDHIIKGVSVHVSNAAPKSEGNNR-TNFNNQINSNMRARGMSGGPIDNNMQG 296
Query: 294 G-GGNGYYDNRQQQQG--GYNNKRRRNDYD 320
GN Y + G G+NN R + D
Sbjct: 297 NYQGNRYMGHSGNNMGPNGWNNPGNRGNLD 326
>gi|193620359|ref|XP_001948343.1| PREDICTED: TAR DNA-binding protein 43-like [Acyrthosiphon pisum]
Length = 365
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 205/357 (57%), Gaps = 28/357 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESRYRAVKLADGHLYAPL 67
Y+ V+ + D +++P+EDD ++LLSTL+AQYP IGLKY+V +R R V+L +G LY P
Sbjct: 2 YVQVSASENSDPIDMPTEDDNSLLLSTLEAQYPGVIGLKYRVNNRLRIVRLNEGKLYPPE 61
Query: 68 DGWQDRVYYCTF-----DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKE 122
DGW DR+Y C F + +S ++ DNS V + DLVVLG+PW T+ DLK+
Sbjct: 62 DGWLDRMYMCNFRNTPTEKRKHSEVDDCNKAEDDNS--VSDMDLVVLGLPWKVTEEDLKK 119
Query: 123 YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTK 182
YF +FG +E+ +K D N G+SKG+GF+RF +S ++ ML++H I R CDVRIP S
Sbjct: 120 YFTKFGQVEYTQIKTDLN-GKSKGYGFVRFKHKKSQVRVMLERHNIEGRWCDVRIPNSKD 178
Query: 183 IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKS 242
+ V KVF+G ++ D+ E L+ +F +G + D+ +P+P R FAFVTF A+
Sbjct: 179 KHVNK-VPRKVFIGQVSEDVDEDALKNYFIKFGEISDLFLPRPHRGFAFVTFTDPLSAQK 237
Query: 243 LIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ-------YGG 295
+IG+ + D VV EA PKK+M + ++ ++ DR DR R N Q +
Sbjct: 238 VIGKDHKVGDCCVVCTEAIPKKEMAPKWNDYDSRDRVKDRRRERSPNQPQAWSQDHIWDY 297
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSPDVLQAVVSKAVSEVL 352
YYD + G+ + N +N+ ++ D++ A V+KAV V+
Sbjct: 298 DQEYYDRLYSRGSGHQSV------------NNSYANDKNINSDMVAAAVNKAVMGVI 342
>gi|189065487|dbj|BAG35326.1| unnamed protein product [Homo sapiens]
Length = 414
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 176/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D +A+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|90074958|dbj|BAE87159.1| unnamed protein product [Macaca fascicularis]
Length = 298
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 182/299 (60%), Gaps = 33/299 (11%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
TF D +A+SL G+ + IK V + A PK ND S +PMS+S+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHTF-------------NDSSVTPMSSSQ 278
>gi|197097374|ref|NP_001127597.1| TAR DNA-binding protein 43 [Pongo abelii]
gi|75070499|sp|Q5R5W2.1|TADBP_PONAB RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|55732302|emb|CAH92854.1| hypothetical protein [Pongo abelii]
Length = 414
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|6678271|ref|NP_031401.1| TAR DNA-binding protein 43 [Homo sapiens]
gi|114553910|ref|XP_514380.2| PREDICTED: TAR DNA-binding protein 43 isoform 3 [Pan troglodytes]
gi|397503024|ref|XP_003822136.1| PREDICTED: TAR DNA-binding protein 43 [Pan paniscus]
gi|20140568|sp|Q13148.1|TADBP_HUMAN RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|901998|gb|AAA70033.1| TAR DNA-binding protein-43 [Homo sapiens]
gi|4886441|emb|CAB43367.1| hypothetical protein [Homo sapiens]
gi|47939520|gb|AAH71657.1| TARDBP protein [Homo sapiens]
gi|49065494|emb|CAG38565.1| TARDBP [Homo sapiens]
gi|63100767|gb|AAH95435.1| TAR DNA binding protein [Homo sapiens]
gi|119592076|gb|EAW71670.1| TAR DNA binding protein, isoform CRA_b [Homo sapiens]
gi|119592077|gb|EAW71671.1| TAR DNA binding protein, isoform CRA_b [Homo sapiens]
gi|130750566|gb|ABO32291.1| TDP43 splice variant 1 [Homo sapiens]
gi|167774073|gb|ABZ92471.1| TAR DNA binding protein [synthetic construct]
gi|208965598|dbj|BAG72813.1| TAR DNA binding protein [synthetic construct]
gi|410251008|gb|JAA13471.1| TAR DNA binding protein [Pan troglodytes]
gi|410302770|gb|JAA29985.1| TAR DNA binding protein [Pan troglodytes]
gi|410342291|gb|JAA40092.1| TAR DNA binding protein [Pan troglodytes]
gi|410342293|gb|JAA40093.1| TAR DNA binding protein [Pan troglodytes]
Length = 414
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|355763816|gb|EHH62216.1| hypothetical protein EGM_20453 [Macaca fascicularis]
Length = 414
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|332250292|ref|XP_003274288.1| PREDICTED: TAR DNA-binding protein 43 [Nomascus leucogenys]
gi|402852911|ref|XP_003891150.1| PREDICTED: TAR DNA-binding protein 43 [Papio anubis]
gi|380783713|gb|AFE63732.1| TAR DNA-binding protein 43 [Macaca mulatta]
gi|384941330|gb|AFI34270.1| TAR DNA-binding protein 43 [Macaca mulatta]
Length = 414
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|130750552|gb|ABO32290.1| TDP43 [Homo sapiens]
Length = 416
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 174/277 (62%), Gaps = 20/277 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER 269
TF D +A+SL G+ + IK V + A PK N +
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQ 269
>gi|108996989|ref|XP_001102660.1| PREDICTED: TAR DNA-binding protein 43 [Macaca mulatta]
Length = 414
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|62897067|dbj|BAD96474.1| TAR DNA binding protein variant [Homo sapiens]
Length = 414
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|119592079|gb|EAW71673.1| TAR DNA binding protein, isoform CRA_d [Homo sapiens]
Length = 298
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 176/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D +A+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|117644607|emb|CAL37794.1| hypothetical protein [synthetic construct]
Length = 414
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQLPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|348571397|ref|XP_003471482.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Cavia
porcellus]
Length = 413
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHSSN-RQLERS 273
>gi|296206694|ref|XP_002750326.1| PREDICTED: TAR DNA-binding protein 43 isoform 2 [Callithrix
jacchus]
gi|403289910|ref|XP_003936082.1| PREDICTED: TAR DNA-binding protein 43 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LR+ F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSADEPLRSRKVFVGRCTEDMTEDELRQFFSQYGEVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|338722162|ref|XP_001492915.3| PREDICTED: TAR DNA-binding protein 43 [Equus caballus]
gi|349602995|gb|AEP98963.1| TAR DNA-binding protein 43-like protein [Equus caballus]
Length = 414
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|345794484|ref|XP_535409.3| PREDICTED: TAR DNA-binding protein 43 [Canis lupus familiaris]
gi|395521863|ref|XP_003765034.1| PREDICTED: TAR DNA-binding protein 43 [Sarcophilus harrisii]
Length = 414
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|345327668|ref|XP_001515396.2| PREDICTED: TAR DNA-binding protein 43 isoform 2 [Ornithorhynchus
anatinus]
Length = 414
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|432098123|gb|ELK28010.1| TAR DNA-binding protein 43 [Myotis davidii]
Length = 414
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|344283523|ref|XP_003413521.1| PREDICTED: TAR DNA-binding protein 43 [Loxodonta africana]
Length = 414
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|348571401|ref|XP_003471484.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Cavia
porcellus]
Length = 295
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHSSNRQLERSGRF 276
>gi|444728185|gb|ELW68649.1| TAR DNA-binding protein 43 [Tupaia chinensis]
Length = 468
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 55 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 114
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 115 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 167
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 168 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 227
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 228 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 286
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 287 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 327
>gi|224079936|ref|XP_002186638.1| PREDICTED: TAR DNA-binding protein 43 [Taeniopygia guttata]
Length = 414
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/271 (47%), Positives = 171/271 (63%), Gaps = 20/271 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFAQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
TF D VA+SL G+ + IK V + A PK
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPK 263
>gi|281349254|gb|EFB24838.1| hypothetical protein PANDA_011802 [Ailuropoda melanoleuca]
Length = 414
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/271 (47%), Positives = 171/271 (63%), Gaps = 20/271 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
TF D VA+SL G+ + IK V + A PK
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPK 263
>gi|126328726|ref|XP_001364580.1| PREDICTED: TAR DNA-binding protein 43-like isoform 4 [Monodelphis
domestica]
Length = 295
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|355723255|gb|AES07833.1| TAR DNA binding protein isoform 4 [Mustela putorius furo]
Length = 280
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|348571399|ref|XP_003471483.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Cavia
porcellus]
Length = 304
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHSSN-RQLERS 273
>gi|410966016|ref|XP_003989534.1| PREDICTED: TAR DNA-binding protein 43 [Felis catus]
Length = 414
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|164448723|ref|NP_001039950.2| TAR DNA-binding protein 43 [Bos taurus]
gi|296479176|tpg|DAA21291.1| TPA: TAR DNA binding protein [Bos taurus]
gi|440901447|gb|ELR52388.1| TAR DNA-binding protein 43 [Bos grunniens mutus]
Length = 414
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|443686443|gb|ELT89721.1| hypothetical protein CAPTEDRAFT_175992 [Capitella teleta]
Length = 444
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/274 (45%), Positives = 165/274 (60%), Gaps = 6/274 (2%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGH 62
M QY+ V + E+ +E+PSE+DGT+LLSTL AQ+P + GLKY+ R ++LADG
Sbjct: 1 MNQYLQVAEDENEEPIELPSEEDGTLLLSTLAAQFPGSCGLKYRNPDSGVLRGIRLADGR 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN---TDLVVLGIPWTFTDND 119
L+ P W + ++YC F + + + V+ +DL+VLG+PW T++D
Sbjct: 61 LHPPDGMWGNHIFYCVFPKENKRKGEEGLENPMAKTKRVEKHKCSDLIVLGLPWKSTEDD 120
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L+ YF QFG L VK D TG+SKGFGF+RF+ +E+ LK + +H I R CDVRIP
Sbjct: 121 LQAYFSQFGELLMVQVKRDLKTGQSKGFGFVRFADYEAQLKCLAVRHMIDGRWCDVRIPN 180
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
S + GT+ V KVF+G T D+T DLR +F +G VVDV IPKPFR FAFVTF V
Sbjct: 181 SRE-GTQHIVNRKVFIGRCTEDMTADDLRSYFNKFGEVVDVFIPKPFRAFAFVTFADPEV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
A +L G+ IK V V A PK QDNR
Sbjct: 240 AHALCGEDHIIKGASVHVSNAAPKSFDKHNQDNR 273
>gi|328783809|ref|XP_392590.4| PREDICTED: TAR DNA-binding protein 43-like [Apis mellifera]
gi|340729558|ref|XP_003403067.1| PREDICTED: TAR DNA-binding protein 43-like [Bombus terrestris]
gi|350411720|ref|XP_003489432.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Bombus
impatiens]
gi|350411723|ref|XP_003489433.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Bombus
impatiens]
gi|380018789|ref|XP_003693304.1| PREDICTED: TAR DNA-binding protein 43-like [Apis florea]
gi|383859208|ref|XP_003705088.1| PREDICTED: TAR DNA-binding protein 43-like [Megachile rotundata]
Length = 467
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 191/329 (58%), Gaps = 18/329 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V + ++ +E+P+EDD T+LL+T+ AQ+P GLKY+ ESR R ++L DG
Sbjct: 1 MSSYIQVAEDEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGR 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
L+ P +GW +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 61 LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLPWK 116
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ +L+EYFE FG + A VK D +G+SKGFGFIRF S+ES L+ + ++H I R CD
Sbjct: 117 TTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCD 176
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
V++P S K G + V KVFVG T DLT DLR++F YG V DV IPKPFR F+FVTF
Sbjct: 177 VKVPNS-KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTF 235
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
VA+SL G+ IK V V A PK + N + N + P+ N+ Q
Sbjct: 236 LDPEVAQSLCGEDHIIKGVSVHVSNAAPKSEGNNKNFNNQVNSNMRRGAPGPVENNVQGN 295
Query: 295 -GGNGYYDNRQQQQG--GYNNKRRRNDYD 320
GN Y + G G+NN R + D
Sbjct: 296 YQGNRYMGHSGNNMGPNGWNNPGNRGNLD 324
>gi|126328722|ref|XP_001364507.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Monodelphis
domestica]
Length = 302
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|326932427|ref|XP_003212319.1| PREDICTED: TAR DNA-binding protein 43-like [Meleagris gallopavo]
Length = 414
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 173/277 (62%), Gaps = 20/277 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER 269
TF D VA+SL G+ + IK V + A PK N +
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQ 269
>gi|126328724|ref|XP_001364432.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Monodelphis
domestica]
Length = 304
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|86824038|gb|AAI05528.1| TAR DNA binding protein [Bos taurus]
Length = 298
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|38174066|gb|AAH61336.1| TAR DNA-binding protein 43 [Xenopus (Silurana) tropicalis]
Length = 407
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 171/278 (61%), Gaps = 20/278 (7%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 2 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 61
Query: 65 APLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
AP +GW + VY + D + SSA + KR+ + +DL+VLG+PW T
Sbjct: 62 APENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAV------TKTSDLIVLGLPWKTT 115
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD +
Sbjct: 116 EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK 175
Query: 177 IPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
+P S +EP+ S KVFVG T D++ +LR+ F YG VVDV IPKPFR FAFVTF
Sbjct: 176 LPNSKS--PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFA 233
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
D VA+SL G+ + IK V V A PK N RQ R
Sbjct: 234 DDQVAQSLCGEDLIIKGVSVHVSTAEPKHN-NNRQLER 270
>gi|348041333|ref|NP_989054.2| TAR DNA-binding protein 43 isoform 1 [Xenopus (Silurana)
tropicalis]
gi|123915948|sp|Q28F51.1|TADBP_XENTR RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|89269046|emb|CAJ81570.1| TAR DNA binding protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 171/278 (61%), Gaps = 20/278 (7%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 4 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 63
Query: 65 APLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
AP +GW + VY + D + SSA + KR+ + +DL+VLG+PW T
Sbjct: 64 APENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAV------TKTSDLIVLGLPWKTT 117
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD +
Sbjct: 118 EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK 177
Query: 177 IPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
+P S +EP+ S KVFVG T D++ +LR+ F YG VVDV IPKPFR FAFVTF
Sbjct: 178 LPNSKS--PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFA 235
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
D VA+SL G+ + IK V V A PK N RQ R
Sbjct: 236 DDQVAQSLCGEDLIIKGVSVHVSTAEPKHN-NNRQLER 272
>gi|301774739|ref|XP_002922789.1| PREDICTED: TAR DNA-binding protein 43-like [Ailuropoda melanoleuca]
Length = 302
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK + + + F
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSSRQLERSGRF 276
>gi|449268445|gb|EMC79309.1| TAR DNA-binding protein 43, partial [Columba livia]
Length = 340
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 175/281 (62%), Gaps = 21/281 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
TF D VA+SL G+ + IK V + A PK N RQ R
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLER 272
>gi|21704096|ref|NP_663531.1| TAR DNA-binding protein 43 isoform 1 [Mus musculus]
gi|20140642|sp|Q921F2.1|TADBP_MOUSE RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|15277550|gb|AAH12873.1| TAR DNA binding protein [Mus musculus]
gi|19343817|gb|AAH25544.1| TAR DNA binding protein [Mus musculus]
gi|20379859|gb|AAH27772.1| TAR DNA binding protein [Mus musculus]
gi|21410360|gb|AAH31126.1| TAR DNA binding protein [Mus musculus]
gi|23271460|gb|AAH33475.1| TAR DNA binding protein [Mus musculus]
gi|26328025|dbj|BAC27753.1| unnamed protein product [Mus musculus]
gi|74222000|dbj|BAE26823.1| unnamed protein product [Mus musculus]
gi|148682884|gb|EDL14831.1| mCG16669, isoform CRA_b [Mus musculus]
gi|257222464|gb|ACV52542.1| TDP-43 variant 1 [Mus musculus]
Length = 414
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|58865526|ref|NP_001011979.1| TAR DNA binding protein [Rattus norvegicus]
gi|53734262|gb|AAH83752.1| Tardbp protein [Rattus norvegicus]
gi|149024637|gb|EDL81134.1| rCG31562, isoform CRA_c [Rattus norvegicus]
Length = 285
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 179/293 (61%), Gaps = 20/293 (6%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRS 285
TF D VA+SL G+ + IK V + A PK N + + F ++ RS
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGKSPFGRS 285
>gi|149024635|gb|EDL81132.1| rCG31562, isoform CRA_b [Rattus norvegicus]
Length = 414
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|148682887|gb|EDL14834.1| mCG16669, isoform CRA_e [Mus musculus]
Length = 416
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 62
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 63 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 115
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 116 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 175
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 176 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 234
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 235 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 275
>gi|74223342|dbj|BAE21557.1| unnamed protein product [Mus musculus]
Length = 414
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|56682931|ref|NP_001003899.1| TAR DNA-binding protein 43 isoform 3 [Mus musculus]
gi|354496954|ref|XP_003510588.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Cricetulus
griseus]
gi|20071690|gb|AAH27105.1| TAR DNA binding protein [Mus musculus]
gi|33086850|gb|AAP92688.1| TARDBP S6 [Mus musculus]
gi|148682883|gb|EDL14830.1| mCG16669, isoform CRA_a [Mus musculus]
Length = 295
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|56682935|ref|NP_001003898.1| TAR DNA-binding protein 43 isoform 5 [Mus musculus]
gi|26337419|dbj|BAC32395.1| unnamed protein product [Mus musculus]
gi|33086852|gb|AAP92689.1| TARDBP S7 [Mus musculus]
gi|148682888|gb|EDL14835.1| mCG16669, isoform CRA_f [Mus musculus]
gi|257222466|gb|ACV52543.1| TDP-43 variant 5 [Mus musculus]
Length = 298
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|149024634|gb|EDL81131.1| rCG31562, isoform CRA_a [Rattus norvegicus]
gi|149024636|gb|EDL81133.1| rCG31562, isoform CRA_a [Rattus norvegicus]
Length = 295
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|148682886|gb|EDL14833.1| mCG16669, isoform CRA_d [Mus musculus]
Length = 300
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 62
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 63 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 115
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 116 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 175
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 176 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 234
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 235 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 278
>gi|148682889|gb|EDL14836.1| mCG16669, isoform CRA_g [Mus musculus]
Length = 288
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 180/298 (60%), Gaps = 22/298 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNS 290
TF D VA+SL G+ + IK V + A PK N + + F + +SP S
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFG--GNPGKSPFGRS 288
>gi|281494221|gb|ADA71972.1| TDP-43 variant 2 [Mus musculus]
Length = 304
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H + R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMVDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K G +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQGPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK + + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISMHISNAEPKHNSN-RQLERS 273
>gi|71894865|ref|NP_001026049.1| TAR DNA-binding protein 43 [Gallus gallus]
gi|82233907|sp|Q5ZLN5.1|TADBP_CHICK RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|53129069|emb|CAG31358.1| hypothetical protein RCJMB04_5g9 [Gallus gallus]
Length = 414
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 174/281 (61%), Gaps = 21/281 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
TF D VA+SL G+ + IK V + A PK N RQ R
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLER 272
>gi|56682933|ref|NP_001008546.1| TAR DNA-binding protein 43 isoform 4 [Mus musculus]
gi|33086854|gb|AAP92690.1| TARDBP S8 [Mus musculus]
Length = 302
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|354496958|ref|XP_003510590.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Cricetulus
griseus]
Length = 302
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 175/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|56682929|ref|NP_001008545.1| TAR DNA-binding protein 43 isoform 2 [Mus musculus]
gi|354496956|ref|XP_003510589.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Cricetulus
griseus]
gi|33086856|gb|AAP92691.1| TARDBP S9 [Mus musculus]
Length = 304
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|26350443|dbj|BAC38861.1| unnamed protein product [Mus musculus]
Length = 301
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|74149067|dbj|BAE32189.1| unnamed protein product [Mus musculus]
Length = 414
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 175/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI V + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVKEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVXNYPKDNKRKMDETDASSAVKGKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|351713714|gb|EHB16633.1| TAR DNA-binding protein 43 [Heterocephalus glaber]
Length = 414
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 174/282 (61%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIP+EDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPAEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG V DV IP PFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFSQYGEVEDVFIPIPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>gi|427797245|gb|JAA64074.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 517
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 171/274 (62%), Gaps = 14/274 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M+ +I V+ + E+ +E+P EDDGT+LL+TL AQ+P+ GLKY+ R V+L DG
Sbjct: 27 MSCFIQVSEDESEEPIELPCEDDGTLLLTTLSAQFPATCGLKYRNPESGTMRGVRLVDGR 86
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-------SGPVQN----TDLVVLGI 111
+ P +GW + VYYC F +++KR + + ++N +DL+VLG+
Sbjct: 87 FHPPDNGWGNVVYYCVFPKDACLHNSENKRKSDEQLENSTAKTKRLENRQKCSDLIVLGL 146
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
PW ++ DL++YFE FG + A VK D TG+SKGFGFIRFSS+ES ++A+ K+H I R
Sbjct: 147 PWKTSEQDLRQYFETFGEVLMAQVKKDPKTGQSKGFGFIRFSSYESQVRALSKRHLIDGR 206
Query: 172 ICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAF 231
CDV+IP S K G ++ KVFVG T DL+ DLR++F YG V DV IPKPFR FAF
Sbjct: 207 WCDVKIPNS-KDGQASELSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIPKPFRAFAF 265
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
VTF VA+SL G+ I+ + V A PK +
Sbjct: 266 VTFVDPDVAQSLCGEDHIIRGTSIHVSNAVPKSE 299
>gi|242023524|ref|XP_002432182.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
gi|212517579|gb|EEB19444.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
Length = 456
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 176/290 (60%), Gaps = 21/290 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V+ E+ +E+P+EDDGT+LLSTL AQ+P GLKY+ ES R V+L +G
Sbjct: 1 MSSYIQVSEVEGEEPIELPTEDDGTLLLSTLAAQFPGTCGLKYRNPESMGLRGVRLVEGR 60
Query: 63 LYAPLDGWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPW 113
L+ P +GW VYYC F D NS+A ++KR ++ +DL+VLG+PW
Sbjct: 61 LHPPDNGWGSVVYYCVFPKENKRKSDDLLENSTA-KTKRMETK----LKCSDLIVLGLPW 115
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ L+EYFE +G + A VK D +G+SKGFGF+RF S+E+ + + ++H I +R C
Sbjct: 116 KTTEQQLREYFETYGEVLMAQVKKDPKSGQSKGFGFVRFGSYEAQARVLTQRHMIDSRWC 175
Query: 174 DVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
DV++P S K G + V KVFVG T D+T DLRE+F +G V DV IPKPFR FAFVT
Sbjct: 176 DVKVPNS-KEGMVQQVPCKVFVGRCTEDITAEDLREYFSKFGEVTDVFIPKPFRAFAFVT 234
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRS 283
F VA+SL G+ IK V V A PK D+R F + + S
Sbjct: 235 FLDPEVAQSLCGEDHIIKGTSVHVSNAAPKSA----NDHRGGFGSQKNMS 280
>gi|20977028|gb|AAM33247.1| mitotic phosphoprotein 39 [Xenopus laevis]
Length = 412
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 170/282 (60%), Gaps = 20/282 (7%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 2 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 61
Query: 65 APLDGWQDRVYYCTFDA---------SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
AP +GW + VY + + SSA + KR+ ++ DL+VLG+PW
Sbjct: 62 APENGWGNLVYVVNYPKDNKRKDGMKTDASSAVKLKRAV------QKHQDLIVLGLPWKT 115
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD
Sbjct: 116 TEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFTEYETQVKVMSQRHMINGRWCDC 175
Query: 176 RIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
++P S +EP+ S KVFVG T D++ +LR+ F YG VVDV IPKPFR F+FVTF
Sbjct: 176 KLPNSKS--PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFSFVTF 233
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
D VA+SL G+ + IK V V A PK N + + F
Sbjct: 234 ADDQVAQSLCGEDLIIKGVSVHVSTAEPKHNNNRQLEREGRF 275
>gi|427797249|gb|JAA64076.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 521
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 171/277 (61%), Gaps = 16/277 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M+ +I V+ + E+ +E+P EDDGT+LL+TL AQ+P+ GLKY+ R V+L DG
Sbjct: 27 MSCFIQVSEDESEEPIELPCEDDGTLLLTTLSAQFPATCGLKYRNPESGTMRGVRLVDGR 86
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-------SGPVQN----TDLVVLGI 111
+ P +GW + VYYC F +++KR + + ++N +DL+VLG+
Sbjct: 87 FHPPDNGWGNVVYYCVFPKDACLHNSENKRKSDEQLENSTAKTKRLENRQKCSDLIVLGL 146
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
PW ++ DL++YFE FG + A VK D TG+SKGFGFIRFSS+ES ++A+ K+H I R
Sbjct: 147 PWKTSEQDLRQYFETFGEVLMAQVKKDPKTGQSKGFGFIRFSSYESQVRALSKRHLIDGR 206
Query: 172 ICDVRIPE---STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE 228
CDV+IP S + G ++ KVFVG T DL+ DLR++F YG V DV IPKPFR
Sbjct: 207 WCDVKIPNSKVSAQDGQASELSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIPKPFRA 266
Query: 229 FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
FAFVTF VA+SL G+ I+ + V A PK +
Sbjct: 267 FAFVTFVDPDVAQSLCGEDHIIRGTSIHVSNAVPKSE 303
>gi|355557536|gb|EHH14316.1| hypothetical protein EGK_00221 [Macaca mulatta]
Length = 270
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 165/258 (63%), Gaps = 18/258 (6%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
L+AP GW + VY + D + SSA + KR+ S DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAGQKPS------DLIVLGLPWK 114
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD
Sbjct: 115 TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCD 174
Query: 175 VRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFVT
Sbjct: 175 CKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT 233
Query: 234 FELDSVAKSLIGQHVNIK 251
F D +A+SL G+ + IK
Sbjct: 234 FADDQIAQSLCGEDLMIK 251
>gi|405957161|gb|EKC23392.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 457
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 174/306 (56%), Gaps = 41/306 (13%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVE--SRYRAVKLADGH 62
M+QYI V E+ ME+PSE+DGT+LLSTL AQ+P A GLKY+ R ++LADG
Sbjct: 1 MSQYIQVAEEEGEEPMEVPSEEDGTLLLSTLSAQFPGACGLKYRNPDTGSMRGIRLADGR 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN------------------- 103
LY P W +R+Y F + N K+ P N+ V
Sbjct: 61 LYPPDIEWSNRIYVAVFPKTENK-----KKQGPGNNASVSTGSPDEQEGGHHKSKKFERQ 115
Query: 104 --TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+DL+VLG+PW T+ DL++YF QFG L VKVD T +SKGFGFIRF+ ++S K
Sbjct: 116 RCSDLIVLGLPWKSTEEDLRKYFSQFGELLMVQVKVDPRTRQSKGFGFIRFADYDSQFKC 175
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
M ++H I R CDVRIP S K G ++ + KVFVG T D+T DLR +F +G VVDV
Sbjct: 176 MSQRHMIDGRWCDVRIPNS-KEGAQQIMNRKVFVGRCTEDMTAEDLRNYFGKFGEVVDVF 234
Query: 222 IPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRND 281
IPKPFR FAFVTF V+++L G+ IK V + A PK N+DR ND
Sbjct: 235 IPKPFRAFAFVTFADPEVSQNLCGEDHIIKGASVHISSAAPK-----------NYDRHND 283
Query: 282 -RSRSP 286
+S SP
Sbjct: 284 KKSTSP 289
>gi|91087839|ref|XP_967837.1| PREDICTED: similar to TBPH CG10327-PA [Tribolium castaneum]
Length = 450
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 193/333 (57%), Gaps = 27/333 (8%)
Query: 4 IMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADG 61
+ +Y+ V + E+ +E+P+EDDGT+LLSTL AQ+P + GLKY+ E++ R V+L++G
Sbjct: 1 MSVEYLQVAEDEGEEPIELPTEDDGTLLLSTLAAQFPGSSGLKYRNPETKAMRGVRLSEG 60
Query: 62 HLYAPLD-GWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIP 112
L+ P + GW +++YC F D + +S ++KR ++ TDL+VLG+P
Sbjct: 61 RLHPPPEIGWGTQIFYCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLP 116
Query: 113 WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRI 172
W T+ +L+EYFE FG + A VK D TG+SKGFGFIRF+S+ES ++ + ++H I R
Sbjct: 117 WKTTEQNLREYFETFGEVLMAQVKKDPKTGQSKGFGFIRFASYESQMRVLAQRHMIDGRW 176
Query: 173 CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
CDV++P S K G + V KVF+G T +LT DLRE+F YG V DV IPKPFR F+FV
Sbjct: 177 CDVKVPNS-KEGLIQQVPCKVFIGRCTEELTADDLREYFGKYGEVTDVFIPKPFRAFSFV 235
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ 292
TF VA+SL G+ IK V V A PK + N N+R
Sbjct: 236 TFLDPEVAQSLCGEDHIIKGVSVHVSNAAPKSETRGGGYGGGGPRGANH------GNNRS 289
Query: 293 YGG--GNGYYDNR---QQQQGGYNNKRRRNDYD 320
G G G Y R QG ++N+ R + D
Sbjct: 290 GPGPDGPGMYQQRYNPGPNQGNWSNQGPRGNID 322
>gi|270011960|gb|EFA08408.1| hypothetical protein TcasGA2_TC006055 [Tribolium castaneum]
Length = 479
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 193/333 (57%), Gaps = 27/333 (8%)
Query: 4 IMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADG 61
+ +Y+ V + E+ +E+P+EDDGT+LLSTL AQ+P + GLKY+ E++ R V+L++G
Sbjct: 1 MSVEYLQVAEDEGEEPIELPTEDDGTLLLSTLAAQFPGSSGLKYRNPETKAMRGVRLSEG 60
Query: 62 HLYAPLD-GWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIP 112
L+ P + GW +++YC F D + +S ++KR ++ TDL+VLG+P
Sbjct: 61 RLHPPPEIGWGTQIFYCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLP 116
Query: 113 WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRI 172
W T+ +L+EYFE FG + A VK D TG+SKGFGFIRF+S+ES ++ + ++H I R
Sbjct: 117 WKTTEQNLREYFETFGEVLMAQVKKDPKTGQSKGFGFIRFASYESQMRVLAQRHMIDGRW 176
Query: 173 CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
CDV++P S K G + V KVF+G T +LT DLRE+F YG V DV IPKPFR F+FV
Sbjct: 177 CDVKVPNS-KEGLIQQVPCKVFIGRCTEELTADDLREYFGKYGEVTDVFIPKPFRAFSFV 235
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ 292
TF VA+SL G+ IK V V A PK + N N+R
Sbjct: 236 TFLDPEVAQSLCGEDHIIKGVSVHVSNAAPKSETRGGGYGGGGPRGANH------GNNRS 289
Query: 293 YGG--GNGYYDNR---QQQQGGYNNKRRRNDYD 320
G G G Y R QG ++N+ R + D
Sbjct: 290 GPGPDGPGMYQQRYNPGPNQGNWSNQGPRGNID 322
>gi|426239738|ref|XP_004013776.1| PREDICTED: TAR DNA-binding protein 43 [Ovis aries]
Length = 415
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 183/321 (57%), Gaps = 21/321 (6%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDS-VAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
TF D A+S G+ + IK V + A PK N + + F +
Sbjct: 233 TFADDQESAQSFCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGN 292
Query: 292 QYGGGNGYYDNRQQQQGGYNN 312
GG G +N+ GG N
Sbjct: 293 SRRGGAGLGNNQGSNMGGGMN 313
>gi|257222468|gb|ACV52544.1| TDP-43 variant 3 [Mus musculus]
Length = 295
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 174/284 (61%), Gaps = 20/284 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +E+PSEDDGT+LLST+ AQ+P + L+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEMPSEDDGTVLLSTVTAQFPRGMRLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
TF D VA+SL G+ + IK V + A PK N + + F
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF 276
>gi|148682885|gb|EDL14832.1| mCG16669, isoform CRA_c [Mus musculus]
Length = 289
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 166/259 (64%), Gaps = 20/259 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 62
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 63 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 115
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 116 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 175
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 176 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 234
Query: 233 TFELDSVAKSLIGQHVNIK 251
TF D VA+SL G+ + IK
Sbjct: 235 TFADDKVAQSLCGEDLIIK 253
>gi|307199474|gb|EFN80087.1| TAR DNA-binding protein 43 [Harpegnathos saltator]
Length = 467
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 171/271 (63%), Gaps = 15/271 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V + E+ +E+P+EDD T+LL+TL AQ+P GLKY+ ESR R V+L DG
Sbjct: 1 MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
L+ P +GW +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 61 LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLPWK 116
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ +L+EYFEQFG + A VK D +G+SKGFGFIRF S+ES L+ + ++H I R CD
Sbjct: 117 TTEQNLREYFEQFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCD 176
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
V++P S K G + V KVFVG T DLT DLR++F +G V DV IPKPFR F+FVTF
Sbjct: 177 VKVPNS-KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPFRAFSFVTF 235
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
VA+SL G+ IK V V A PK +
Sbjct: 236 LDPEVAQSLCGEDHIIKGVSVHVSNAAPKSE 266
>gi|116283521|gb|AAH29728.1| Tardbp protein [Mus musculus]
Length = 288
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 166/259 (64%), Gaps = 20/259 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIK 251
TF D VA+SL G+ + IK
Sbjct: 233 TFADDKVAQSLCGEDLIIK 251
>gi|332029556|gb|EGI69445.1| TAR DNA-binding protein 43 [Acromyrmex echinatior]
Length = 469
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V + E+ +E+P+EDD T+LL+TL AQ+P GLKY+ ESR R V+L DG
Sbjct: 1 MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
L+ P +GW +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 61 LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETK----LRCTDLIVLGLPWK 116
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ +L+EYFE FG + A VK D +G+SKGFGFIRF S+ES L+ + ++H I R CD
Sbjct: 117 TTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCD 176
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
V++P S K G + V KVFVG T DLT DLRE+F +G V DV IPKPFR F+FVTF
Sbjct: 177 VKVPNS-KEGMIQQVPCKVFVGRCTEDLTADDLREYFSKFGEVTDVFIPKPFRAFSFVTF 235
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
VA+SL G+ IK V V A PK +
Sbjct: 236 LDPEVAQSLCGEDHIIKGVSVHVSNAAPKSE 266
>gi|42542491|gb|AAH66430.1| Tardbpl protein [Danio rerio]
Length = 298
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 164/267 (61%), Gaps = 18/267 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V + E+ MEIPSE+DGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P W + VY + D +SA + KR G + +DL+VLG+PW T+
Sbjct: 65 PEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKR------GIQKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D +G SKGFGF+RF+ +E+ +K M ++H I R CD ++
Sbjct: 119 QDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S KVFVG T D+T +LR+ F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
D VA+SL G+ + IK V + A PK
Sbjct: 238 DQVAQSLCGEDLIIKGTSVHISNAEPK 264
>gi|209154888|gb|ACI33676.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 399
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 124/274 (45%), Positives = 164/274 (59%), Gaps = 19/274 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEGILHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W VY + D +SA + KRS S DL++LG+PW ++
Sbjct: 65 PENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRSIEKTS------DLIILGLPWKTSE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S K+FVG T D+T +LR+ F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
D VA +L G+ + IK V + A PK N RQ
Sbjct: 238 DQVASALCGEDLIIKGVSVHISNAEPKHN-NSRQ 270
>gi|348521706|ref|XP_003448367.1| PREDICTED: TAR DNA-binding protein 43-like [Oreochromis niloticus]
Length = 402
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 165/267 (61%), Gaps = 18/267 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+LLST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW + VY + D SSA + KR G ++ +DL+VLG+PW T+
Sbjct: 65 PENGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKR------GDMKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S KVFVG T D+T DLR+ F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
D VA+SL G+ + IK V + A PK
Sbjct: 238 DQVAQSLCGEDLIIKGVSVHISNAEPK 264
>gi|432857373|ref|XP_004068664.1| PREDICTED: TAR DNA-binding protein 43-like [Oryzias latipes]
Length = 402
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 164/267 (61%), Gaps = 18/267 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+LLST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P GW + VY + D SSA + KR G ++ +DL+VLG+PW T+
Sbjct: 65 PETGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKR------GDMKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S KVFVG T D+T DLR+ F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
D VA+SL G+ + IK V + A PK
Sbjct: 238 DQVAQSLCGEDLIIKGVSVHISNAEPK 264
>gi|357603649|gb|EHJ63861.1| hypothetical protein KGM_07603 [Danaus plexippus]
Length = 411
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 13/261 (4%)
Query: 27 DGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYAPLDGWQDRVYYCTFDA--- 81
DGT++L+T+ AQ+P GLKY+ E++ +R ++L DG LY P +GW +++Y C+F
Sbjct: 24 DGTLMLTTVSAQFPGCCGLKYRHPETKTFRGIRLRDGRLYPPPEGWGNQLYICSFPKENK 83
Query: 82 --SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
SG++S T S +S +++ +DL+VLG+PW T+ ++EYFE+FG + A +K D
Sbjct: 84 RKSGDNSETSSVKSKRNDN---LCSDLIVLGLPWKATEQTVREYFEKFGEVLMAQLKRDP 140
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLT 199
TG SKGF FIRFSS+ S ++ + ++H I R CDVRIP S K G+ + KVFVG T
Sbjct: 141 KTGMSKGFAFIRFSSYTSQMRVLAQRHMIDGRWCDVRIPNS-KEGSVTSMPCKVFVGRCT 199
Query: 200 PDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVME 259
DLT +DLRE+F +G V DV IPKPFR F+F+TF VA+SL GQ IK V V
Sbjct: 200 EDLTANDLREYFSQFGEVTDVFIPKPFRAFSFITFLDPEVAQSLCGQDHIIKGVSVNVSN 259
Query: 260 ATPKKKMNERQDNRNNFDRRN 280
A+PK+ N+ N+ N RN
Sbjct: 260 ASPKQ--NKSGSNQRNLPSRN 278
>gi|432864812|ref|XP_004070429.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Oryzias
latipes]
Length = 396
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 168/274 (61%), Gaps = 19/274 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ ES+ R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W + VY + +SA + KR + S DL+VLG+PW T+
Sbjct: 65 PENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTS------DLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K+ +EP+ S K+FVG T D+T +LR++F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KVCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
D VA++L G+ + IK V + A PK N RQ
Sbjct: 238 DQVAQALCGEDLIIKGVSVHISNAEPKHN-NSRQ 270
>gi|41393063|ref|NP_958884.1| TAR DNA-binding protein 43 [Danio rerio]
gi|29387090|gb|AAH49348.1| TAR DNA binding protein [Danio rerio]
Length = 412
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 167/282 (59%), Gaps = 27/282 (9%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+LLST+ AQ+P A GL+++ V R V+L DG L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVLLSTVSAQFPGACGLRFRSPVSQCMRGVRLVDGILHA 64
Query: 66 PLDGWQDRVYYCTF-------------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIP 112
P +GW + VY + D SSAT+ KR G + +DL+VLG+P
Sbjct: 65 PENGWGNLVYVVNYPKETVLPDNKRKMDEIDASSATKIKR------GDQKTSDLIVLGLP 118
Query: 113 WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRI 172
W ++ DLK+YF FG + VK D TG SKGFGF+RF E+ K M ++H I R
Sbjct: 119 WKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQRHMIDGRW 178
Query: 173 CDVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAF 231
CD ++P S K G +EP+ S KVFVG T D+T +LR+ F YG V DV IPKPFR FAF
Sbjct: 179 CDCKLPNS-KQGIDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAF 237
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATPK----KKMNER 269
VTF D VA +L G+ + IK V + A PK ++M ER
Sbjct: 238 VTFADDQVAAALCGEDLIIKGVSVHISNAEPKHNNTRQMMER 279
>gi|38198639|ref|NP_938178.1| TAR DNA-binding protein 43 [Danio rerio]
gi|27882272|gb|AAH44405.1| TAR DNA binding protein, like [Danio rerio]
gi|182888816|gb|AAI64253.1| Tardbpl protein [Danio rerio]
Length = 303
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 164/271 (60%), Gaps = 21/271 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V + E+ MEIPSE+DGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P W + VY + D +SA + KR G + +DL+VLG+PW T+
Sbjct: 65 PEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKR------GIQKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D +G SKGFGF+RF+ +E+ +K M ++H I R CD ++
Sbjct: 119 QDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKL 178
Query: 178 PEST----KIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
P S + G +EP+ S KVFVG T D+T +LR+ F YG V DV IPKPFR FAFV
Sbjct: 179 PNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFV 238
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
TF D VA+SL G+ + IK V + A PK
Sbjct: 239 TFADDQVAQSLCGEDLIIKGTSVHISNAEPK 269
>gi|432864810|ref|XP_004070428.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Oryzias
latipes]
Length = 299
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 165/267 (61%), Gaps = 18/267 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ ES+ R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W + VY + +SA + KR + S DL+VLG+PW T+
Sbjct: 65 PENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTS------DLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K+ +EP+ S K+FVG T D+T +LR++F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KVCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
D VA++L G+ + IK V + A PK
Sbjct: 238 DQVAQALCGEDLIIKGVSVHISNAEPK 264
>gi|209154032|gb|ACI33248.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 405
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 169/276 (61%), Gaps = 21/276 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDG++LLST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGSVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGILHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW + VY + D +SA + KR G ++ +DL+VLG+PW T+
Sbjct: 65 PENGWGNLVYVVNYPKDNKRKMDEIDAASAVKMKR------GDMKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQDKVISQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S KVFVG T DL+ +LR+ F YG V DV IPKPFR FAFV+F
Sbjct: 179 PNS-KQGPDEPMRSRKVFVGRCTEDLSADELRQFFMQYGEVTDVFIPKPFRAFAFVSFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK---KKMNER 269
D VA SL G+ + IK V + A PK ++M ER
Sbjct: 238 DQVASSLCGEDLIIKGVSVHISNAEPKHGSRQMTER 273
>gi|225708396|gb|ACO10044.1| TAR DNA-binding protein 43 [Osmerus mordax]
Length = 304
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 175/303 (57%), Gaps = 27/303 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ + R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRSPASQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTFDASG--------------NSSATQSKRSYPDNSGPVQNTDLVVLGI 111
P W + VY + G +SA + KR G + +DL+VLG+
Sbjct: 65 PESDWGNLVYVVNYPKVGVILPDNKRKMDEMDAASAVKIKR------GIQKTSDLIVLGL 118
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
PW ++ DLK+YF FG + +K D TG SKGFGF+RF+ +E+ K + ++H I R
Sbjct: 119 PWKTSEQDLKDYFSTFGEVIMVQIKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGR 178
Query: 172 ICDVRIPESTKIGTEEPV-ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFA 230
CD ++P S K+G +EP K+FVG T D+T +LR+ F YG V DV IPKPFR FA
Sbjct: 179 WCDCKLPNS-KVGPDEPQRCRKIFVGRCTEDMTTDELRQFFMQYGEVTDVFIPKPFRAFA 237
Query: 231 FVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNS 290
FVTF D VA++L G+ + IK V + A PK N Q +NF R+ S + M +
Sbjct: 238 FVTFADDQVAQALCGEDLIIKGVSVHISNAEPKH--NNIQQLFSNFPGRSP-SLAAMFDR 294
Query: 291 RQY 293
QY
Sbjct: 295 SQY 297
>gi|195431559|ref|XP_002063804.1| GK15864 [Drosophila willistoni]
gi|194159889|gb|EDW74790.1| GK15864 [Drosophila willistoni]
Length = 556
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 199/343 (58%), Gaps = 35/343 (10%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNMDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVDSGWGEYIYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T++ L+EYFE FG + A +K D +G+SKGFGF+RF S+E+ ++ + +H I R C+V
Sbjct: 119 TEDSLREYFESFGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN + +S N+ G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNHQGQSYNYNTGNSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDY--DDWHHGNGGNSNNATVS 336
+ Y+ QG + N R + ++ H+ +GG N+A V+
Sbjct: 286 MHSYH----HPQGNHINSGRSGHHRGNNQHNAHGGGDNSAIVN 324
>gi|223647646|gb|ACN10581.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 406
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 169/282 (59%), Gaps = 21/282 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+LLST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGILHA 64
Query: 66 PLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW + Y + D SSA + KR G ++ +DL+VLG+PW ++
Sbjct: 65 PENGWGNLAYVVNYPKDNKRKMDEIDASSAVKMKR------GDMKTSDLIVLGLPWKTSE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQDKVISQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K G +EP+ S KVFVG T D++ +LR+ F YG V DV IPKPFR FAFV+F
Sbjct: 179 PNS-KQGPDEPMRSRKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPFRAFAFVSFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK---KKMNERQDNRNN 275
D VA SL G+ + IK V + A PK ++M ER N
Sbjct: 238 DQVASSLCGEDLIIKGVSVHISNAEPKHGSRQMMERAGRFGN 279
>gi|347970001|ref|XP_309663.5| AGAP003497-PA [Anopheles gambiae str. PEST]
gi|333466662|gb|EAA05403.6| AGAP003497-PA [Anopheles gambiae str. PEST]
Length = 569
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 164/266 (61%), Gaps = 19/266 (7%)
Query: 15 LEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADG--HLYAPL 67
+EE+G +EIP E+DGT+LLSTLQAQ+ A GLKY+ R V+L D H ++P
Sbjct: 14 VEEEGDEAVEIPLEEDGTLLLSTLQAQFYGACGLKYRNPDNKAIRGVRLNDNKLHPFSPD 73
Query: 68 DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDND 119
GW + VY C F D +S ++KR N TDL+VLG+PW T+
Sbjct: 74 SGWGNHVYICVFPKENKRKSDDKLENSTPKTKRIESRNR---TTTDLIVLGLPWKTTEES 130
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L+EYFE FG L +K D TG+SKG+GFIRF+ ES +KA+ K+H I +R CDV++P
Sbjct: 131 LREYFETFGELLVVQIKKDSKTGQSKGYGFIRFARFESQMKALSKRHLIDSRWCDVKVP- 189
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
S+K T+ + SK+F+G LT D+ D+R++F YG V DV IPKPFR FAFVTF V
Sbjct: 190 SSKDQTQHQMPSKIFLGRLTEDINSDDIRDYFSKYGEVTDVFIPKPFRAFAFVTFIDPHV 249
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKK 265
A+SL G+ IK V V A+P+ +
Sbjct: 250 AQSLCGEDHLIKGTSVYVSTASPRPE 275
>gi|194752716|ref|XP_001958665.1| GF12452 [Drosophila ananassae]
gi|190619963|gb|EDV35487.1| GF12452 [Drosophila ananassae]
Length = 529
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 189/330 (57%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G +
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRFFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + VY+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVDSGWGEYVYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
+++ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 SEDSLREYFESYGEVLMAQIKKDNKSGQSKGFGFVRFGSYDAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN ++++ NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNSQAQNYNYNSGNSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
N Y GG N R N+ + H G
Sbjct: 286 MNSYPPQGNHMNGGRNGHHRGNNQHNVHGG 315
>gi|194885691|ref|XP_001976478.1| GG19989 [Drosophila erecta]
gi|190659665|gb|EDV56878.1| GG19989 [Drosophila erecta]
Length = 533
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 189/330 (57%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYLYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN +++S NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNQQAQSYNYNSANSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+ Y+ G N R N+ + H G
Sbjct: 286 MHSYHPQGNHMNPGRNGHHRGNNQHNAHGG 315
>gi|195489341|ref|XP_002092695.1| GE11522 [Drosophila yakuba]
gi|194178796|gb|EDW92407.1| GE11522 [Drosophila yakuba]
Length = 534
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 188/330 (56%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNMDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYLYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN +++S NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNQQAQSYNYNSANSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+ Y+ G N R N+ H G
Sbjct: 286 MHSYHPQGNHMNPGRNGHHRGNNQHSAHGG 315
>gi|321476369|gb|EFX87330.1| hypothetical protein DAPPUDRAFT_97182 [Daphnia pulex]
Length = 266
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 159/262 (60%), Gaps = 15/262 (5%)
Query: 6 AQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV-ESR-YRAVKLADGHL 63
YI V + E+ +E+P+EDD +LLSTL AQ+P GLKY+ ESR R V+L +G
Sbjct: 3 CSYIQVAEDETEEPIELPTEDDSALLLSTLAAQFPGVSGLKYRAPESRSMRGVRLLEGRF 62
Query: 64 YAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGP--------VQNTDLVVLGIPWTF 115
P DGW + VY C F + +P+NS ++ +DL+VLG+PW
Sbjct: 63 QPPEDGWGNHVYICVFPKENKRKSD----DHPENSTAKTKRMEMRLKCSDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ DL+ YFE FG L A VK D TG+SKGFGFIRF++++S ++ + ++H I R CDV
Sbjct: 119 SEQDLRVYFENFGELLMAQVKKDAKTGQSKGFGFIRFANYDSQVRVLSQRHLIDGRWCDV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
+IP S GT + V KVFVG T D+T DLR++F +G V DV IPKPFR F+FVTF
Sbjct: 179 KIPNSKAGGTPQ-VPCKVFVGRCTEDITADDLRDYFCKFGEVTDVFIPKPFRAFSFVTFL 237
Query: 236 LDSVAKSLIGQHVNIKDKKVVV 257
VA+SL G+ IK + +
Sbjct: 238 DPEVAQSLCGEDHIIKGSRCAL 259
>gi|195347229|ref|XP_002040156.1| GM15502 [Drosophila sechellia]
gi|195586189|ref|XP_002082860.1| GD25005 [Drosophila simulans]
gi|194135505|gb|EDW57021.1| GM15502 [Drosophila sechellia]
gi|194194869|gb|EDX08445.1| GD25005 [Drosophila simulans]
Length = 531
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 187/330 (56%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN + +S NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNQQVQSYNYNSANSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+ Y+ G N R N+ + H G
Sbjct: 286 MHSYHPQGNHMNPGRNGHHRGNNQHNAHGG 315
>gi|17137616|ref|NP_477400.1| TAR DNA-binding protein-43 homolog, isoform B [Drosophila
melanogaster]
gi|19549788|ref|NP_599145.1| TAR DNA-binding protein-43 homolog, isoform C [Drosophila
melanogaster]
gi|24762415|ref|NP_726373.1| TAR DNA-binding protein-43 homolog, isoform D [Drosophila
melanogaster]
gi|281364145|ref|NP_001163280.1| TAR DNA-binding protein-43 homolog, isoform E [Drosophila
melanogaster]
gi|281364147|ref|NP_001163281.1| TAR DNA-binding protein-43 homolog, isoform F [Drosophila
melanogaster]
gi|19528241|gb|AAL90235.1| GH09868p [Drosophila melanogaster]
gi|21626670|gb|AAF47079.2| TAR DNA-binding protein-43 homolog, isoform B [Drosophila
melanogaster]
gi|21626671|gb|AAF47078.2| TAR DNA-binding protein-43 homolog, isoform C [Drosophila
melanogaster]
gi|21626672|gb|AAM68274.1| TAR DNA-binding protein-43 homolog, isoform D [Drosophila
melanogaster]
gi|63108407|gb|AAY33499.1| RH39704p [Drosophila melanogaster]
gi|220946666|gb|ACL85876.1| TBPH-PB [synthetic construct]
gi|220956308|gb|ACL90697.1| TBPH-PB [synthetic construct]
gi|272432674|gb|ACZ94552.1| TAR DNA-binding protein-43 homolog, isoform E [Drosophila
melanogaster]
gi|272432675|gb|ACZ94553.1| TAR DNA-binding protein-43 homolog, isoform F [Drosophila
melanogaster]
Length = 531
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 187/330 (56%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN + +S NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNQQVQSYNYNSANSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+ Y+ G N R N+ + H G
Sbjct: 286 MHSYHPQGNHMNPGRNGHHRGNNQHNAHGG 315
>gi|195028318|ref|XP_001987023.1| GH20198 [Drosophila grimshawi]
gi|193903023|gb|EDW01890.1| GH20198 [Drosophila grimshawi]
Length = 545
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 192/340 (56%), Gaps = 36/340 (10%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+L+STLQAQ+P + GLKY+ ++S+ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLISTLQAQFPGSCGLKYRNMDSKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + VY+C F D + +S ++KR ++ TDL+VLG+ W
Sbjct: 63 PCVDSGWGEYVYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLAWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T++ L+EYFE +G + A +K D +G+SKGFGF+RF S+E+ ++ + +H I R C+V
Sbjct: 119 TEDSLREYFESYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLANRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RS + + Y
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN----------------RSHQAQNYSYNT 280
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDY--DDWHHGNGGNSNNA 333
GN Y + QG + N R + ++ H +GG N A
Sbjct: 281 GNSYGMHSYHPQGNHMNSGRSGHHRGNNQHIAHGGGDNTA 320
>gi|260793326|ref|XP_002591663.1| hypothetical protein BRAFLDRAFT_223429 [Branchiostoma floridae]
gi|229276872|gb|EEN47674.1| hypothetical protein BRAFLDRAFT_223429 [Branchiostoma floridae]
Length = 431
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 164/281 (58%), Gaps = 12/281 (4%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
QY+ VT++ ++ +E+PSEDDGT+LLST+ AQ+P A GLK++ R ++L DG L+
Sbjct: 2 QYVRVTDDENDEPIELPSEDDGTMLLSTIMAQFPGACGLKFRNPETQTMRGIRLVDGILH 61
Query: 65 APLDGWQDRVYYCTFDASGNSSATQSKRSYPDNS------GPVQNTDLVVLGIPWTFTDN 118
P W ++ F +S P+N+ ++ +DL+VLG+PW T+
Sbjct: 62 PPEGVWGSHLFIVVFPKDNKRKIDES----PENNLVKRPREKLKCSDLIVLGLPWKTTEQ 117
Query: 119 DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIP 178
+L+EY EQ+G + +K D TG SKGFGF+RF+ +E LK M ++H I R CDV+IP
Sbjct: 118 ELREYMEQYGEVLMVQIKKDPKTGNSKGFGFVRFAEYEVQLKVMTQRHMIDGRWCDVKIP 177
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238
S + ++ KVF+G T D++ DLR +F+ +G V DV IPKPFR FAFVTF+
Sbjct: 178 HSKGVNMNALLSRKVFIGRCTEDMSAEDLRAYFQQFGEVTDVFIPKPFRAFAFVTFQDGE 237
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRR 279
A++L G+ IK V V A PK + + NF +
Sbjct: 238 TAQNLCGEDHIIKGASVHVSNAEPKHYQQQMMQQQGNFGHQ 278
>gi|410899380|ref|XP_003963175.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Takifugu
rubripes]
Length = 383
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 162/273 (59%), Gaps = 21/273 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ E++ R V+L +G LYA
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPETQCLRGVRLLEGVLYA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W + VY + +SA + KR + S DL+VLG+PW T+
Sbjct: 65 PENDWGNLVYIVNYPKDNKRKMEEIDAASAVKVKRGFQKTS------DLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDLKTGNSKGFGFVRFTDYETQIKVIAQRHLIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELD 237
P S P KVFVG T D+T +LR++F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNSKAC----PDDRKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPFRAFAFVTFADH 234
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
VA++L G+ + IK V + A PK N RQ
Sbjct: 235 QVAQALCGEDLIIKGVSVHISNAEPKHN-NSRQ 266
>gi|312373745|gb|EFR21436.1| hypothetical protein AND_17061 [Anopheles darlingi]
Length = 609
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 160/263 (60%), Gaps = 19/263 (7%)
Query: 16 EEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADG--HLYAPLD 68
EE+G +EIP E+DGT+LLSTLQAQ+ A GLKY+ R V+L DG H ++P
Sbjct: 15 EEEGDEAVEIPLEEDGTLLLSTLQAQFYGACGLKYRNPENKVIRGVRLNDGKLHPFSPDS 74
Query: 69 GWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDL 120
GW + VY C F D +S ++KR N TDL+VLG+PW T+ L
Sbjct: 75 GWGNHVYICVFPKENKRKSDDRLENSTPKTKRIESRNR---TTTDLIVLGLPWKTTEERL 131
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
+EYFE FG L +K D NTG+SKG+GFIRF+ E +K + K+H I +R CDV++P S
Sbjct: 132 REYFESFGELLVVQLKKDANTGQSKGYGFIRFARFECQMKVLSKRHLIDSRWCDVKVP-S 190
Query: 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVA 240
+K + + SK+F+G LT D+ D+R +F YG V DV IPKPFR FAFVTF VA
Sbjct: 191 SKDQMQHQMPSKIFLGRLTEDINADDIRGYFSKYGEVADVFIPKPFRAFAFVTFMDPHVA 250
Query: 241 KSLIGQHVNIKDKKVVVMEATPK 263
+SL G+ IK V V A+P+
Sbjct: 251 QSLCGEDHLIKSTSVYVSTASPR 273
>gi|3882096|dbj|BAA34421.1| TAR-binding protein [Drosophila melanogaster]
gi|3882126|dbj|BAA34428.1| TAR-binding protein [Drosophila melanogaster]
gi|3882128|dbj|BAA34429.1| TAR-binding protein [Drosophila melanogaster]
Length = 531
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 187/330 (56%), Gaps = 29/330 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +++P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIQLPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK + N RN + +S NS G
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN-----------RNQQVQSYNYNSANSFG 285
Query: 296 GNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+ Y+ G N R N+ + H G
Sbjct: 286 MHSYHPQGNHMNPGRNGHHRGNNQHNAHGG 315
>gi|149024638|gb|EDL81135.1| rCG31562, isoform CRA_d [Rattus norvegicus]
Length = 271
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 159/252 (63%), Gaps = 20/252 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLI 244
TF D V LI
Sbjct: 233 TFADDKVFFLLI 244
>gi|170057997|ref|XP_001864728.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
gi|167877238|gb|EDS40621.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
Length = 540
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 162/272 (59%), Gaps = 16/272 (5%)
Query: 23 PSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADG--HLYAPLDGWQDRVYYCT 78
P EDDGT+ LSTLQAQ+ A GLKY+ E+R R V+L D H +AP GW +Y C
Sbjct: 33 PLEDDGTLSLSTLQAQFYGACGLKYRNPENRAIRGVRLNDNKLHPFAPEQGWGSHIYICV 92
Query: 79 FDASGNSSATQSKRSYPDNSGPVQN-----TDLVVLGIPWTFTDNDLKEYFEQFGTLEFA 133
F + + + ++N TDL+VLG+PW T+ L+EYF+ FG L
Sbjct: 93 FPKENKRKSDDKLENSTPKTKRIENRNRTTTDLIVLGLPWKTTEEGLREYFDVFGDLLVV 152
Query: 134 NVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K D TG+SKG+GFIRF+ ES +KA+ K+H I R CDV++P S+K + + SK+
Sbjct: 153 QIKKDAKTGQSKGYGFIRFAKFESQMKALSKRHLIDGRWCDVKVP-SSKDQMQHQMPSKI 211
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDK 253
F+G +T D+T D+RE+F YG V DV IPKPFR FAFVTF VA+SL G+ IK
Sbjct: 212 FLGRVTEDMTADDIREYFSKYGEVTDVFIPKPFRAFAFVTFIDPHVAQSLCGEDHLIKGA 271
Query: 254 KVVVMEATPKKKMNERQD------NRNNFDRR 279
V V A+P+ + N Q N +N+D R
Sbjct: 272 SVYVSTASPRPEHNRNQQKNQMGGNFSNYDER 303
>gi|195122786|ref|XP_002005892.1| GI20724 [Drosophila mojavensis]
gi|193910960|gb|EDW09827.1| GI20724 [Drosophila mojavensis]
Length = 536
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 184/317 (58%), Gaps = 25/317 (7%)
Query: 15 LEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYAPL-- 67
EE+G +E+P+E+DGT+L+STLQAQ+P + GLKY+ ++S+ R V+ +G L+ P
Sbjct: 7 CEEEGDEPIELPAEEDGTLLISTLQAQFPGSCGLKYRNMDSKAVRGVRSNEGRLFPPNVD 66
Query: 68 DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDND 119
GW + VY+C F D + +S ++KR ++ TDL+VLG+ W T++
Sbjct: 67 SGWGEYVYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLAWKTTEDS 122
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L+EYFE +G + A +K D +G+SKGFGF+RF S+E+ ++ + +H I R C+V++P
Sbjct: 123 LREYFESYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLANRHLIDGRWCEVKVPN 182
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF V
Sbjct: 183 SKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDV 240
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN-NFDRRND---RSRSPMSNSRQYGG 295
A+SL G+ IK V V A PK + N +N N++ N+ S P N G
Sbjct: 241 AQSLCGEDHIIKGVSVHVSNAAPKAEQNRTHQGQNYNYNSGNNFGMHSYHPQGNHMNSGR 300
Query: 296 GNGYYDNRQQQQGGYNN 312
+ N Q G +N
Sbjct: 301 SGHHRGNNQHNLHGGDN 317
>gi|256080303|ref|XP_002576421.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645466|emb|CCD59818.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 417
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 179/344 (52%), Gaps = 26/344 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+ +Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKY+ YR V+L D
Sbjct: 3 LTRYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTF------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
L+ P DG W + C F A +S ++ K D TDL+VL +PW
Sbjct: 63 LFPPTDGQWHGNTFCCVFPKCSKRKADEDSLDSKMKLKRFDKK---TCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYTAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + V+ KV +G LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGDRQEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ V A PK + RQ N NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISVGSAVPKLPPSARQSNTNNQRIPVTSMQAALQSTMMGTQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
Q+G Y Q N Y H G S N ++
Sbjct: 300 QWGAWPPAYGGMVQN----------NRYGGQHSSGKGGSRNGSM 333
>gi|17137614|ref|NP_477399.1| TAR DNA-binding protein-43 homolog, isoform A [Drosophila
melanogaster]
gi|21626673|gb|AAF47080.2| TAR DNA-binding protein-43 homolog, isoform A [Drosophila
melanogaster]
Length = 332
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 183/313 (58%), Gaps = 23/313 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRI----ETRLRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD----NRNNFDRRNDRSRSPMSNSR 291
VA+SL G+ IK V V A PK + N Q N N+ + S P N
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHM 296
Query: 292 QYGGGNGYYDNRQ 304
G NG++ RQ
Sbjct: 297 N-PGRNGHHRGRQ 308
>gi|256080307|ref|XP_002576423.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645467|emb|CCD59819.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 457
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 178/344 (51%), Gaps = 26/344 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+ +Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKY+ YR V+L D
Sbjct: 3 LTRYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN------TDLVVLGIPWTF 115
L+ P DG W + C F A + D+ ++ TDL+VL +PW
Sbjct: 63 LFPPTDGQWHGNTFCCVFPKCSKRKADEDSL---DSKMKLKRFDKKTCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYTAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + V+ KV +G LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGDRQEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ V A PK + RQ N NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISVGSAVPKLPPSARQSNTNNQRIPVTSMQAALQSTMMGTQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
Q+G Y Q N Y H G S N ++
Sbjct: 300 QWGAWPPAYGGMVQN----------NRYGGQHSSGKGGSRNGSM 333
>gi|350645464|emb|CCD59816.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 450
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 178/344 (51%), Gaps = 26/344 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+ +Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKY+ YR V+L D
Sbjct: 3 LTRYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN------TDLVVLGIPWTF 115
L+ P DG W + C F A + D+ ++ TDL+VL +PW
Sbjct: 63 LFPPTDGQWHGNTFCCVFPKCSKRKADEDSL---DSKMKLKRFDKKTCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYTAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + V+ KV +G LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGDRQEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ V A PK + RQ N NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISVGSAVPKLPPSARQSNTNNQRIPVTSMQAALQSTMMGTQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
Q+G Y Q N Y H G S N ++
Sbjct: 300 QWGAWPPAYGGMVQN----------NRYGGQHSSGKGGSRNGSM 333
>gi|256080305|ref|XP_002576422.1| tar DNA-binding protein [Schistosoma mansoni]
Length = 446
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 178/344 (51%), Gaps = 26/344 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+ +Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKY+ YR V+L D
Sbjct: 3 LTRYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN------TDLVVLGIPWTF 115
L+ P DG W + C F A + D+ ++ TDL+VL +PW
Sbjct: 63 LFPPTDGQWHGNTFCCVFPKCSKRKADEDSL---DSKMKLKRFDKKTCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYTAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + V+ KV +G LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGDRQEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ V A PK + RQ N NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISVGSAVPKLPPSARQSNTNNQRIPVTSMQAALQSTMMGTQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
Q+G Y Q N Y H G S N ++
Sbjct: 300 QWGAWPPAYGGMVQN----------NRYGGQHSSGKGGSRNGSM 333
>gi|257215902|emb|CAX83103.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 183/342 (53%), Gaps = 24/342 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+++Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKYK +R V+L D
Sbjct: 3 LSKYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYKSGDSGCFRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTF------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
L+ P DG W + C F A +S ++ K+ D TDL+VL +PW
Sbjct: 63 LFPPADGHWYKNTFCCVFPKCSKRKADEDSWDSKMKQKRFDKK---TCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYAAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + VA KV VG LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGNRQDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ + A PK RQ+ NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISIGSAVPKLPHTARQNINNNQRVPITSMQAALQSTMMGNQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNA 333
+G + Y G +N R R D + GGN N +
Sbjct: 300 PWGAWSPAYG------GMIHNNRYRG--DQYSSSKGGNRNGS 333
>gi|3882097|dbj|BAA34422.1| TAR-binding protein [Drosophila melanogaster]
gi|3882130|dbj|BAA34430.1| TAR-binding protein [Drosophila melanogaster]
Length = 332
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 183/313 (58%), Gaps = 23/313 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +++P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIQLPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRI----ETRLRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD----NRNNFDRRNDRSRSPMSNSR 291
VA+SL G+ IK V V A PK + N Q N N+ + S P N
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHM 296
Query: 292 QYGGGNGYYDNRQ 304
G NG++ RQ
Sbjct: 297 N-PGRNGHHRGRQ 308
>gi|47228815|emb|CAG07547.1| unnamed protein product [Tetraodon nigroviridis]
Length = 362
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 166/283 (58%), Gaps = 25/283 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ E++ R V+L +G LYA
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPETQCLRGVRLLEGVLYA 64
Query: 66 PLDGWQDRVYYCTF-DASGNSSATQSKRSY-PDNS----------------GPVQNTDLV 107
P + W + VY + S S A+++ Y DN G + +DL+
Sbjct: 65 PENDWGNLVYIVNYPKVSTRSDASEAASIYVSDNKRKMEEIDAASAVKVKRGFQKTSDLI 124
Query: 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHK 167
VLG+PW T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K + ++H
Sbjct: 125 VLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDLKTGNSKGFGFVRFTDYETQIKVIAQRHL 184
Query: 168 IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR 227
I R CD ++P S P KVFVG T D+T +LR++F YG V DV IPKPFR
Sbjct: 185 IDGRWCDCKLPNSKAC----PDDRKVFVGRCTEDMTADELRQYFMQYGEVTDVFIPKPFR 240
Query: 228 EFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
FAFVTF VA++L G+ + IK V + A PK N RQ
Sbjct: 241 AFAFVTFADHQVAQALCGEDLIIKGVSVHISNAEPKHN-NSRQ 282
>gi|195149343|ref|XP_002015617.1| GL10927 [Drosophila persimilis]
gi|198462059|ref|XP_001352323.2| GA10247 [Drosophila pseudoobscura pseudoobscura]
gi|194109464|gb|EDW31507.1| GL10927 [Drosophila persimilis]
gi|198139765|gb|EAL29286.2| GA10247 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 190/337 (56%), Gaps = 41/337 (12%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNMDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P GW + +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 63 PSVDSGWGEYIYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLPWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T++ L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V
Sbjct: 119 TEDSLREYFESYGEVLMAQIKKDVKSGQSKGFGFVRFGSYDAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGVGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFF 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGG 295
VA+SL G+ IK V V A PK ++SRS + Y
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKA----------------EQSRSHQGQNYNYSS 280
Query: 296 GNGYYDNRQQQQG-------GYNNKRRRNDYDDWHHG 325
GN Y + QG G + + R N+ + H G
Sbjct: 281 GNSYGMHSYHPQGNHMSSHPGRSGQHRGNNQHNAHGG 317
>gi|257215904|emb|CAX83104.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 183/342 (53%), Gaps = 24/342 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGH 62
+++Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKYK +R V+L D
Sbjct: 3 LSKYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYKSGDSGCFRGVRLLDDR 62
Query: 63 LYAPLDG-WQDRVYYCTF------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
L+ P DG W + C F A +S ++ K+ D TDL+VL +PW
Sbjct: 63 LFPPADGHWYKNTFCCVFPKCSKRKADEDSWDSKMKQKRFDKK---TCTDLIVLNLPWRA 119
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDV
Sbjct: 120 DEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYAAQVMCLAERHTIENRQCDV 179
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
RIP S G + VA KV VG LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 180 RIPISKMEGDRQDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFD 239
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSR 291
VA SL+G+ I+ ++ + A PK RQ+ NN +S M ++
Sbjct: 240 DPEVAASLLGKDQEIQGVRISIGSAVPKLPHTARQNINNNQRVPITSMQAALQSTMMGNQ 299
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNA 333
+G + Y G +N R R D + GGN N +
Sbjct: 300 PWGAWSPAYG------GMIHNNRYRG--DQYSSSKGGNRNGS 333
>gi|410899382|ref|XP_003963176.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Takifugu
rubripes]
Length = 294
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 159/266 (59%), Gaps = 20/266 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ E++ R V+L +G LYA
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPETQCLRGVRLLEGVLYA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W + VY + +SA + KR + S DL+VLG+PW T+
Sbjct: 65 PENDWGNLVYIVNYPKDNKRKMEEIDAASAVKVKRGFQKTS------DLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDLKTGNSKGFGFVRFTDYETQIKVIAQRHLIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELD 237
P S P KVFVG T D+T +LR++F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNSKAC----PDDRKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPFRAFAFVTFADH 234
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPK 263
VA++L G+ + IK V + A PK
Sbjct: 235 QVAQALCGEDLIIKGVSVHISNAEPK 260
>gi|112983234|ref|NP_001037606.1| TAR DNA binding protein homolog [Bombyx mori]
gi|95115208|gb|ABF55970.1| TBPH [Bombyx mori]
Length = 286
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 160/261 (61%), Gaps = 14/261 (5%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESRYRAVKLADGHLY 64
M +Y+ V+ +++ +E+P+E+DG++LLST+ AQ+ A GLKY+V R R V+L D L
Sbjct: 1 MTEYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQFAGASGLKYRVNGRLRGVRLVDERLS 60
Query: 65 APLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYF 124
P +GW Y+C F + +S P + +DL+VLG+PW T+ +++YF
Sbjct: 61 PPAEGWPAYRYWCAFPRA------ESPPPRP------RCSDLIVLGLPWKTTEEAVRDYF 108
Query: 125 EQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIG 184
FG L VK D TG SKGFGFI+F+ +E+ L+A+ ++H I R CDVRIP K G
Sbjct: 109 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNG-KDG 167
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
+ KVFVG T ++T DLRE+F +G V DV +P+PFR F+FVTF VA+SL
Sbjct: 168 SST-AHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLC 226
Query: 245 GQHVNIKDKKVVVMEATPKKK 265
GQ IK V + A+PK++
Sbjct: 227 GQDHIIKGVSVNISTASPKRE 247
>gi|195382465|ref|XP_002049950.1| GJ21868 [Drosophila virilis]
gi|194144747|gb|EDW61143.1| GJ21868 [Drosophila virilis]
Length = 539
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 188/319 (58%), Gaps = 23/319 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+L+STLQAQ+P + GLKY+ ++S+ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIELPAEEDGTLLISTLQAQFPGSCGLKYRNMDSKAVRGVRSNEGRLFP 62
Query: 66 P-LDG-WQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P +D W D VY+C F D + +S ++KR ++ TDL+VLG+ W
Sbjct: 63 PNVDSDWGDYVYFCVFPKENKRKSDDNLENSTAKTKRIETR----LRCTDLIVLGLAWKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T++ L+EYFE +G + A +K D +G+SKGFGF+RF S+E+ ++ + +H I R C+V
Sbjct: 119 TEDSLREYFEGYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLSNRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF
Sbjct: 179 KVPNSKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN-NFDRRND---RSRSPMSNSR 291
VA+SL G+ IK V V A PK + N +N N++ N+ S P N
Sbjct: 237 DPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRTHQGQNYNYNSGNNFGMHSYHPQGNHM 296
Query: 292 QYG-GGNGYYDNRQQQQGG 309
G G+ +N+ GG
Sbjct: 297 NSGRSGHHRGNNQHNAHGG 315
>gi|148225398|ref|NP_001080637.1| TAR DNA binding protein [Xenopus laevis]
gi|28278686|gb|AAH44271.1| Tardbp-prov protein [Xenopus laevis]
Length = 245
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 152/242 (62%), Gaps = 19/242 (7%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 4 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 63
Query: 65 APLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
AP +GW + VY + D + SSA + KR+ + +DL+VLG+PW T
Sbjct: 64 APENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAV------TKTSDLIVLGLPWKTT 117
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD +
Sbjct: 118 EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK 177
Query: 177 IPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
+P S +EP+ S KVFVG T D++ +LR+ F YG VVDV IPKPFR F+FVTF
Sbjct: 178 LPNSK--SPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFSFVTFA 235
Query: 236 LD 237
D
Sbjct: 236 DD 237
>gi|410919809|ref|XP_003973376.1| PREDICTED: TAR DNA-binding protein 43-like [Takifugu rubripes]
Length = 399
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 161/267 (60%), Gaps = 18/267 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+ LST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVRLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW + VY + SSA + KR G ++ +DL+VLG+PW T+
Sbjct: 65 PENGWGNVVYVVNYPKDNKRKMEEIDASSAVKMKR------GDMKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK + TG SKGFGF+RF+ +++ K + ++H I R CD +
Sbjct: 119 QDLKDYFSTFGEVIMVQVKREGRTGSSKGFGFVRFAEYDAQEKVISQRHMIDGRWCDCKF 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K +EP+ S KVFVG T D+T DLR+ F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KQPLDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
D VA+SL G+ + IK V + A PK
Sbjct: 238 DQVAQSLCGEDLIIKGISVHISNAEPK 264
>gi|357616936|gb|EHJ70495.1| hypothetical protein KGM_10405 [Danaus plexippus]
Length = 441
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 164/274 (59%), Gaps = 19/274 (6%)
Query: 5 MAQYIYVTNNLEE-DGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADG 61
+ +YI V+ + ++ + +EIP E DGT+LLSTL AQ+P A GLKY+ R ++L+DG
Sbjct: 11 LFEYIKVSEDEDDSNAVEIPCEHDGTMLLSTLVAQFPGACGLKYRHPDSKATRGIRLSDG 70
Query: 62 HLYAPLD-GWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGI 111
L+ P D GW +Y C F D S +SA ++KR + +DL+ LG+
Sbjct: 71 KLHPPSDAGWGKHLYICVFPKENKRKMEDVSPENSAAKTKRL----EKKLTCSDLICLGL 126
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
PW T+ +K+YFEQFG + +K DKN G KGFGFIRF+++ S ++A+ ++H I R
Sbjct: 127 PWKTTEESIKQYFEQFGEVVMVQLKRDKN-GSFKGFGFIRFATYASQMRALAQRHNIDGR 185
Query: 172 ICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAF 231
DVRIP S K G + KVFVG T D+T DLR++F +G V DV +P+PFR F F
Sbjct: 186 WVDVRIPNS-KEGVVPQMPCKVFVGRCTEDMTADDLRDYFSRFGEVTDVFVPRPFRAFGF 244
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
VTF VA+SL G+ IK V V A PK K
Sbjct: 245 VTFLDPEVAQSLCGEDHVIKGASVSVSSAAPKIK 278
>gi|348514638|ref|XP_003444847.1| PREDICTED: TAR DNA-binding protein 43-like [Oreochromis niloticus]
Length = 396
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 166/280 (59%), Gaps = 18/280 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ E++ R V+L +G L+
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPETQCMRGVRLVEGVLHP 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P + W + VY + +S + KR + S DL+VLG+PW T+
Sbjct: 65 PENDWGNLVYIVNYPKDNKRKMEEIDAASVVKIKRGFQKTS------DLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177
DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R CD ++
Sbjct: 119 QDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTDYETQTKVIAQRHMIDGRWCDCKL 178
Query: 178 PESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
P S K +EP+ S K+FVG T D+T DLR++F YG V DV IPKPFR FAFVTF
Sbjct: 179 PNS-KACPDEPMRSRKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPFRAFAFVTFAD 237
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
D VA++L G+ + IK V + A PK + + +R F
Sbjct: 238 DQVAQALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGRF 277
>gi|357631285|gb|EHJ78874.1| TAR DNA binding protein-like protein [Danaus plexippus]
Length = 305
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 158/263 (60%), Gaps = 12/263 (4%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESRYRAVKLADGHLYAP 66
+Y+ V+ +++ +E+P+E+DG++LLST+ AQ+ A GLKY+ R R ++L + + P
Sbjct: 4 EYVVVSEGEQDEPIELPTEEDGSLLLSTISAQFVGASGLKYRAGGRLRGLRLTEDRVLPP 63
Query: 67 LDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQ 126
+GW Y+C F +AT R +DL+VLG+PW + ++EYF
Sbjct: 64 AEGWGAHRYFCAFPRVDIPTATTRPRC----------SDLIVLGLPWKTGEETVREYFST 113
Query: 127 FGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTE 186
FG L VK D TG SKGFGFI+F+ +++ L+A+ ++H I R CDVRIP S K G+
Sbjct: 114 FGDLLMVQVKRDTKTGLSKGFGFIKFAEYDAQLRALGRRHMIDGRWCDVRIPNS-KDGSS 172
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246
KVFVG T LT DLRE+F +G V DV +PKPFR F+FVTF VA+SL GQ
Sbjct: 173 A-AHRKVFVGRCTESLTADDLREYFGAFGQVTDVFVPKPFRAFSFVTFLDPEVAQSLCGQ 231
Query: 247 HVNIKDKKVVVMEATPKKKMNER 269
IK V + A+PK++ + R
Sbjct: 232 DHVIKGVSVNISTASPKREHSGR 254
>gi|410899384|ref|XP_003963177.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Takifugu
rubripes]
Length = 310
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/276 (43%), Positives = 163/276 (59%), Gaps = 24/276 (8%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
YI V + E+ MEIPSEDDGT+LLS++ AQ+P A GL+Y+ E++ R V+L +G LYA
Sbjct: 5 YIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPETQCLRGVRLLEGVLYA 64
Query: 66 PLDGWQDRVYYCTF-DASGNSSATQSKRSY-PDNS----------------GPVQNTDLV 107
P + W + VY + S S A+++ Y DN G + +DL+
Sbjct: 65 PENDWGNLVYIVNYPKVSPTSDASEAASIYVSDNKRKMEEIDAASAVKVKRGFQKTSDLI 124
Query: 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHK 167
VLG+PW T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K + ++H
Sbjct: 125 VLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDLKTGNSKGFGFVRFTDYETQIKVIAQRHL 184
Query: 168 IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR 227
I R CD ++P S P KVFVG T D+T +LR++F YG V DV IPKPFR
Sbjct: 185 IDGRWCDCKLPNSKAC----PDDRKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPFR 240
Query: 228 EFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
FAFVTF VA++L G+ + IK V + A PK
Sbjct: 241 AFAFVTFADHQVAQALCGEDLIIKGVSVHISNAEPK 276
>gi|76156635|gb|AAX27802.2| SJCHGC01369 protein [Schistosoma japonicum]
Length = 386
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/339 (37%), Positives = 180/339 (53%), Gaps = 24/339 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGHLYA 65
Y+ + ++ +E+P EDD T+LLSTL AQ+P GLKYK +R V+L D L+
Sbjct: 1 YVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYKSGDSGCFRGVRLLDDRLFP 60
Query: 66 PLDG-WQDRVYYCTF------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDN 118
P DG W + C F A +S ++ K+ D TDL+VL +PW ++
Sbjct: 61 PADGHWYKNTFCCVFPKCSKRKADEDSWDSKMKQKRFDKK---TCTDLIVLNLPWRADED 117
Query: 119 DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIP 178
L++YF Q+G L +K D T +SKG+GFIRF+ + + + + ++H I NR CDVRIP
Sbjct: 118 TLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYAAQVMCLAERHTIENRQCDVRIP 177
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238
S G + VA KV VG LT D++ LR+HF YG V DV IPKPFR FAF+TF+
Sbjct: 178 ISKMEGDRQDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFDDPE 237
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRRNDRSRSPMSNSRQYG 294
VA SL+G+ I+ ++ + A PK RQ+ NN +S M ++ +G
Sbjct: 238 VAASLLGKDQEIQGVRISIGSAVPKLPHTARQNINNNQRVPITSMQAALQSTMMGNQPWG 297
Query: 295 GGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNA 333
+ Y G +N R R D + GGN N +
Sbjct: 298 AWSPAYG------GMIHNNRYRG--DQYSSSKGGNRNGS 328
>gi|397509976|ref|XP_003825383.1| PREDICTED: LOW QUALITY PROTEIN: TAR DNA-binding protein 43-like
[Pan paniscus]
Length = 416
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 166/282 (58%), Gaps = 21/282 (7%)
Query: 1 MQKIMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL 58
M+KI ++YI T + +++ +EIPSEDDG +LLS + AQ+P GL+Y+ V R V+L
Sbjct: 1 MEKI-SEYIRXTEDEKDEPIEIPSEDDGMVLLSMVTAQFPGVCGLRYRNPVSQCMRGVRL 59
Query: 59 ADGHLYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVL 109
+G L+AP GW + VY + D SSA + KR+ VQ T DLVVL
Sbjct: 60 VEGILHAPNSGWXNLVYVVNYPKDNKRKMDEIDASSAVKVKRA-------VQKTSDLVVL 112
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIG 169
G+ W T+ DLKEYF FG + VK D TG SK FGFI F+ E+ +K M + H I
Sbjct: 113 GLTWKTTEQDLKEYFSTFGEVLMVQVKKDTKTGHSKRFGFICFTEDETQVKVMSQLHVID 172
Query: 170 NRICDVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE 228
R CD ++P S K ++P+ S KVFVG T D+T +LR+ F YG VVDV+I KPFR
Sbjct: 173 GRWCDCKLPNS-KQSPDKPLRSMKVFVGRXTEDMTADELRQFFCQYGEVVDVVILKPFRT 231
Query: 229 FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
FAFVTF D VA+S G+ + IK + + A PK N +
Sbjct: 232 FAFVTFADDQVAQSFCGEDLIIKGISIHISNAEPKHNSNRXE 273
>gi|389610037|dbj|BAM18630.1| heterogeneous nuclear ribonucleoprotein 27c [Papilio xuthus]
Length = 318
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/281 (43%), Positives = 168/281 (59%), Gaps = 19/281 (6%)
Query: 8 YIYVTNNLEE-DGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLY 64
YI V + ++ + +EIP E DGT+LLSTL AQ+P A GLKY+ E++ R ++L DG L+
Sbjct: 15 YIKVGEDEDDINAVEIPCEHDGTLLLSTLVAQFPGACGLKYRHPETKSIRGIRLNDGKLH 74
Query: 65 APLD-GWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
P + GW +Y C F D S +SA ++KR + +DL+ LG+PW
Sbjct: 75 PPTEAGWGKNLYICVFPKENKRKMDDVSSENSAAKTKRL----EKKLTCSDLICLGLPWK 130
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ +K+YFEQFG + +K DKN G KGFGFIRF+++ S ++A+ ++H I R D
Sbjct: 131 STEESIKQYFEQFGEVVMVQLKKDKN-GSFKGFGFIRFATYASQMRALAQRHNIDGRWVD 189
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
VRIP S K G + KVFVG T D+T DLRE+F +G V DV +P+PFR F FVTF
Sbjct: 190 VRIPNS-KEGVVPQMPCKVFVGRCTEDMTADDLREYFSSFGEVTDVFVPRPFRAFGFVTF 248
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN 275
VA+SL G+ IK V V A PK K Q+ +++
Sbjct: 249 LDPEVAQSLCGEDHVIKGASVSVSSAAPKIKNKSNQNWKDD 289
>gi|358252904|dbj|GAA50476.1| TAR DNA-binding protein 43 [Clonorchis sinensis]
Length = 507
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 163/285 (57%), Gaps = 12/285 (4%)
Query: 15 LEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHLYAPLDG 69
EE+G +E+P E DGT+LL TL AQ+P GLKYK E +R ++L H+Y P++
Sbjct: 55 CEEEGTEPVELPVEADGTLLLPTLTAQFPKCTGLKYKSEDSGCFRGLRLVGDHIYPPVET 114
Query: 70 WQDRVYYCTFDA----SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFE 125
D V+YC F G+ +K+ G + TDL+VL + W + L+ YF
Sbjct: 115 DWDNVFYCVFPKDKKRKGDEDTEDTKQKVKCLEG-RKCTDLIVLNLAWQTDETKLRNYFS 173
Query: 126 QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGT 185
QFG L +K D +TG+S+G+GF+RFS + + ++H I R+CDVRIP S + G
Sbjct: 174 QFGDLVMVQIKKDPDTGKSRGYGFVRFSDYSGQAMCLAERHMIDGRLCDVRIPLSKQEGD 233
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG 245
+ V+ K+ VG+L + LR+HF YG V+DV IPKPFR FAFVTF+ VA SL+G
Sbjct: 234 RQEVSRKIHVGNLPESIGADALRQHFLQYGLVIDVFIPKPFRSFAFVTFDDPDVAASLLG 293
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNS 290
+ + I+ KV + A PK + RQ+ +F+ RSP S
Sbjct: 294 KDLTIQGHKVTIGSAVPKLPSHVRQN--PSFENAGGNLRSPYPGS 336
>gi|328723850|ref|XP_003247957.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Acyrthosiphon
pisum]
gi|328723852|ref|XP_003247958.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Acyrthosiphon
pisum]
Length = 392
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 180/301 (59%), Gaps = 30/301 (9%)
Query: 4 IMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR-YRAVKLADGH 62
+ +Y+ V++ + +E+P ED+GT+LLSTL AQ+P A GLK++ E+ R V+LAD
Sbjct: 1 MSVKYVLVSDEEYGEAVELPLEDNGTLLLSTLTAQFPGASGLKFRTENNVVRGVRLADFR 60
Query: 63 LYAPLDGWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPW 113
+ P + W YYC F D S + ++KR ++ +DLVVL IP+
Sbjct: 61 FHVPDNEWGKTPYYCVFPKVENKRKIDDSVENPTAKTKRL----ETKLKCSDLVVLNIPY 116
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ + LKEYF QFG L +K DKN G+S+G+GF+R+++ ES ++ + ++HKI R C
Sbjct: 117 TYDEQKLKEYFGQFGELLMLQIKRDKN-GQSRGYGFLRYTNLESQVRVLSQRHKIDGRNC 175
Query: 174 DVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PFREFAFV 232
+V++P+S K G ++ KVFVG +T DLT D+RE+F +G V++V +PK PFR FAFV
Sbjct: 176 EVKVPKS-KEGNGSELSGKVFVGRVTEDLTADDIREYFSKFGEVINVFVPKNPFRGFAFV 234
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN-------------ERQDNRNNFDRR 279
TF VA SL G+ +KD V V EA PK + ER +NR+N + R
Sbjct: 235 TFLDPEVAASLCGEDHIVKDVSVRVSEAAPKPQAPKNRHQTPPPSEPWERSNNRHNDNYR 294
Query: 280 N 280
N
Sbjct: 295 N 295
>gi|328723854|ref|XP_001948745.2| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Acyrthosiphon
pisum]
Length = 377
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 178/292 (60%), Gaps = 27/292 (9%)
Query: 4 IMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR-YRAVKLADGH 62
+ +Y+ V++ + +E+P ED+GT+LLSTL AQ+P A GLK++ E+ R V+LAD
Sbjct: 1 MSVKYVLVSDEEYGEAVELPLEDNGTLLLSTLTAQFPGASGLKFRTENNVVRGVRLADFR 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKE 122
+ P + W YYC F + ++KR ++ +DLVVL IP+T+ + LKE
Sbjct: 61 FHVPDNEWGKTPYYCVFPKA------KTKRL----ETKLKCSDLVVLNIPYTYDEQKLKE 110
Query: 123 YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTK 182
YF QFG L +K DKN G+S+G+GF+R+++ ES ++ + ++HKI R C+V++P+S K
Sbjct: 111 YFGQFGELLMLQIKRDKN-GQSRGYGFLRYTNLESQVRVLSQRHKIDGRNCEVKVPKS-K 168
Query: 183 IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PFREFAFVTFELDSVAK 241
G ++ KVFVG +T DLT D+RE+F +G V++V +PK PFR FAFVTF VA
Sbjct: 169 EGNGSELSGKVFVGRVTEDLTADDIREYFSKFGEVINVFVPKNPFRGFAFVTFLDPEVAA 228
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKMN-------------ERQDNRNNFDRRN 280
SL G+ +KD V V EA PK + ER +NR+N + RN
Sbjct: 229 SLCGEDHIVKDVSVRVSEAAPKPQAPKNRHQTPPPSEPWERSNNRHNDNYRN 280
>gi|289741549|gb|ADD19522.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 531
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 173/303 (57%), Gaps = 28/303 (9%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHLYA 65
+I V + +D +E+P+E+DG++LLSTLQAQ+P A GLKY E +R V+ +G +
Sbjct: 3 FIQVLEDEGDDPIELPTEEDGSLLLSTLQAQFPGACGLKYINEETKCFRGVRSNEGRFFP 62
Query: 66 PL--DGWQDRVYYCTF--------DASGNSSATQSKR--SYPDNSGPVQNTDLVVLGIPW 113
P GW YYC F D + +S ++KR S P + TDL+VLG+PW
Sbjct: 63 PYVEIGWGSHAYYCVFPKENKRKSDDNLENSTAKTKRIESRP------RCTDLIVLGLPW 116
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T++ L+ YFE +G + +K D +G+SKGFGF+RF S++ ++ + +H I R C
Sbjct: 117 KTTEDSLRSYFETYGEVLMTQIKKDMKSGQSKGFGFVRFGSYDVQVRVLSTRHLIDGRWC 176
Query: 174 DVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
+V++P S + + P KVFVG T D+ DL+++F +G V DV IPKPFR F+FVT
Sbjct: 177 EVKVPNSKGMVNQVPC--KVFVGRCTEDMNADDLKDYFSKFGEVTDVFIPKPFRAFSFVT 234
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQY 293
F VA+SL G+ IK V V A PK + N +++ + S +P S +
Sbjct: 235 FLDPEVAQSLCGEDHIIKGISVHVSNAAPKGEQNRGRNSPGSV------SLAPHSGPINF 288
Query: 294 GGG 296
GGG
Sbjct: 289 GGG 291
>gi|291237256|ref|XP_002738551.1| PREDICTED: TAR DNA binding protein-like [Saccoglossus kowalevskii]
Length = 311
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 159/266 (59%), Gaps = 9/266 (3%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGH 62
MA YI V + ++ +E+P E+DG+ILLST+ AQYP GL+Y+ R +++ DG
Sbjct: 4 MAAYIRVAEDEGDEPIEMPLEEDGSILLSTILAQYPGCCGLRYRNPDTGGIRGLRVVDGA 63
Query: 63 LYAPLDG-WQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN---TDLVVLGIPWTFTDN 118
++ P DG W D Y F ++ + + V+ TDL+VLG+PW T+
Sbjct: 64 IH-PADGMWSDVCYLGVFPKDNKRKPEETLETPVGKTRRVEKQKCTDLIVLGLPWKTTEE 122
Query: 119 DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIP 178
+LKEYF FG L + VK D TG SKGFGF+RF +E+ LK M ++H I R CDV+IP
Sbjct: 123 ELKEYFSDFGELLMSQVKKDPKTGNSKGFGFVRFKDYETQLKVMSQRHNIDGRWCDVKIP 182
Query: 179 ESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELD 237
S K+ P A KVFVG +T D+T+ DL +F +G VVDV IPKPFR FAFVTF
Sbjct: 183 FS-KVNMSLPNAGRKVFVGRVTEDITKEDLYSYFTQFGEVVDVFIPKPFRFFAFVTFADA 241
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPK 263
VA+SL G+ + +K V V A PK
Sbjct: 242 EVAQSLCGEDLIVKGNSVHVSNAEPK 267
>gi|431906336|gb|ELK10533.1| TAR DNA-binding protein 43 [Pteropus alecto]
Length = 391
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 162/282 (57%), Gaps = 44/282 (15%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYE----------------- 156
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
T+ +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 157 -------TQQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFV 209
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 210 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 250
>gi|405960878|gb|EKC26752.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 420
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 157/281 (55%), Gaps = 26/281 (9%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
Y+ V +++ +EIPSEDDGT+LLSTL AQ+P A GLKY+ +R V+L++G+LY
Sbjct: 5 YLQVAEKEDDEPVEIPSEDDGTLLLSTLAAQFPGACGLKYRNPQTGNFRGVRLSEGYLYP 64
Query: 66 PL-DGWQDRVYYCTFDASGN-------------SSATQSKRSYPDNSGPVQNT------- 104
P W D VY F N S +KR D P T
Sbjct: 65 PEGSSWGDVVYVVVFPKVQNVVQEQEENQIHYIPSICDNKRKGDDIENPGSKTRRMDKKR 124
Query: 105 --DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
DL+VLG+PW T+ D+++YF QFG L VK D TG+SKGFGF+RF E+ K +
Sbjct: 125 CVDLIVLGLPWKSTEEDMRKYFSQFGELLLVQVKRDGKTGQSKGFGFVRFGDFEAQSKCL 184
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
++H I R C+V IP S + + P+ KVF+ + D+T DL ++F +G V DV I
Sbjct: 185 AQRHMIDGRWCEVNIPASNEQ-SGPPMNRKVFIARCSEDITADDLHKYFSKFGEVSDVFI 243
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
PKPFR FAFVTF +A+SL G+ IK V V ATPK
Sbjct: 244 PKPFRAFAFVTFMDAEIAQSLCGEDHIIKGTSVHVSSATPK 284
>gi|391331401|ref|XP_003740135.1| PREDICTED: TAR DNA-binding protein 43-like [Metaseiulus
occidentalis]
Length = 479
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 159/267 (59%), Gaps = 12/267 (4%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVE--SRYRAVKLADGHLYA 65
YI V E+ +E+P E DGT+LL+TL Q+P+A GLKY+ YR V+L +G L A
Sbjct: 5 YIQVAEEEGEEPIELPGELDGTLLLTTLTGQFPNACGLKYRNPDTGAYRGVRLVEGRLSA 64
Query: 66 PLDGWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
P GW R +YC ++ G +A + + +DL+VLG+PW T
Sbjct: 65 PEGGWGARTFYCVVPKDTKKRPDESPGGGAAVDPIVKMKVRTDAKKCSDLIVLGLPWKTT 124
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ +L++YFE FG + A VK D T +SKGFGFIRFSS+ES ++ + K+H I R CDV+
Sbjct: 125 EQELRQYFEAFGEVLMAQVKKDPKTQQSKGFGFIRFSSYESQIRVLSKRHMIDGRWCDVK 184
Query: 177 IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
IP S + G ++ KVFVG T DLT DLR++F +G V DV IPKPFR FAFVTF
Sbjct: 185 IPNS-RDGQASELSRKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPFRAFAFVTFVD 243
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPK 263
VA+SL G+ IK + V A PK
Sbjct: 244 AEVAQSLCGEDHIIKGTSIHVSNAVPK 270
>gi|350645456|emb|CCD59808.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 344
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 157/274 (57%), Gaps = 9/274 (3%)
Query: 6 AQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHL 63
++I V + E +E+P EDDGT+LL+TLQ+ +P + GLKY R V+L DG L
Sbjct: 4 VKFIRVCEDDNESPIEVPIEDDGTVLLATLQSVFPKSTGLKYLAPESGCLRGVRLNDGKL 63
Query: 64 YAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN---TDLVVLGIPWTFTDNDL 120
+AP DGW VY C F + K Y ++ TDL+VL + W ++ L
Sbjct: 64 FAPSDGWV-HVYQCAFPRDNKRKGIEEKDIYSSKFKKLEEKKCTDLIVLNLAWKTDESTL 122
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF ++G L VK ++ SKG+GFIR++ ES + + ++H I R+CDVRIP S
Sbjct: 123 KEYFSRYGDLVTVQVKRHPDSNLSKGYGFIRYNDMESQIMCLSERHSIDGRLCDVRIPIS 182
Query: 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVA 240
G + V+ KV VG +T +T + LR++F +GAV+DV IPKPFR FAFV+FE VA
Sbjct: 183 KLEGDRQEVSRKVHVGGITESITATVLRDYFSQFGAVLDVFIPKPFRSFAFVSFEDPEVA 242
Query: 241 KSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
L+G+ I+ V + A PK Q NRN
Sbjct: 243 AELLGKDQVIEGVCVSIGSAVPKL---HPQQNRN 273
>gi|328704450|ref|XP_001951795.2| PREDICTED: TAR DNA-binding protein 43-like [Acyrthosiphon pisum]
Length = 409
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 159/269 (59%), Gaps = 17/269 (6%)
Query: 12 TNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV--ESRYRAVKLADGHLYAPLD- 68
TN+ +++ +++P E DGT+LLSTL+AQYP A GLKY R RA++LAD L+ P D
Sbjct: 9 TNDGDKEVVDLPLEKDGTLLLSTLRAQYPDACGLKYVAPDNGRTRALRLADDKLHPPTDD 68
Query: 69 GWQDRVYYCTFDASGNSS-------ATQSKRSYPD-----NSGPVQNTDLVVLGIPWTFT 116
GW D VY+C+F+ + +R+ D S +N DL+VLG+PW T
Sbjct: 69 GWGDIVYFCSFNKDNGQKRKLNEEFESDVERASKDPKSEATSTAWKNRDLLVLGLPWKTT 128
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
D DL+ YF ++G L A +K + GRS+GFGFIRF ES +++ML H I R C+++
Sbjct: 129 DEDLESYFSKYGELRMAQIKKTAD-GRSRGFGFIRFKEQESQVRSMLDSHVINGRRCEIK 187
Query: 177 IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
IP E K+FVG LT +T+ DL ++F+ +G +V+V +P+PF+ AFV+F
Sbjct: 188 IPNIKDAFINE-APKKIFVGQLTESITQEDLEDYFKKFGDIVEVFVPRPFKGIAFVSFTK 246
Query: 237 DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
A + + Q IKD ++ V A PK K
Sbjct: 247 PDAALTALDQDHTIKDIRLSVSVAMPKDK 275
>gi|24664592|ref|NP_648764.1| CG7804, isoform A [Drosophila melanogaster]
gi|442632483|ref|NP_001261874.1| CG7804, isoform B [Drosophila melanogaster]
gi|21428322|gb|AAM49821.1| AT09813p [Drosophila melanogaster]
gi|23093435|gb|AAF49643.2| CG7804, isoform A [Drosophila melanogaster]
gi|220949576|gb|ACL87331.1| CG7804-PA [synthetic construct]
gi|220958484|gb|ACL91785.1| CG7804-PA [synthetic construct]
gi|440215819|gb|AGB94567.1| CG7804, isoform B [Drosophila melanogaster]
Length = 318
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 170/276 (61%), Gaps = 20/276 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
+++V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GL+Y+ V+++ R V+ +G LY+
Sbjct: 3 FVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAVRGVRSNEGRLYS 62
Query: 66 PLD--GWQDRVYYCTF---------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
P + GW + Y+C F D NS+A ++KR+ ++ DL+VLG+ +
Sbjct: 63 PSEETGWGEYHYFCVFPKKNKRQSEDNLENSTA-KTKRT----EAHLRCFDLIVLGLSYN 117
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ DL+EYFE +G + A +K D +G SKGFGF+RF S++ + + K+H I R C+
Sbjct: 118 TTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCE 177
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234
V++P S +G +EP KVFVG T D+ DLRE+F +G V+DV IPKPFR F+FVTF
Sbjct: 178 VKVPASRGMGNQEP--GKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTF 235
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
V + + G+ IK V V A K N+ Q
Sbjct: 236 LDPYVPRVVCGEKHIIKGVSVHVSTADKKNVQNKNQ 271
>gi|195590439|ref|XP_002084953.1| GD12565 [Drosophila simulans]
gi|194196962|gb|EDX10538.1| GD12565 [Drosophila simulans]
Length = 319
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 178/297 (59%), Gaps = 21/297 (7%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P GL+Y+ VE++ R V+ +G +Y+
Sbjct: 3 FVQVSEKEGDEPIELPAEEDGTLLLSTLQAQFPECSGLQYRIVETKAVRGVRSNEGRMYS 62
Query: 66 PLD--GWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P + GW + Y+C F D + +S ++KR+ P ++ DL+VLG+ +
Sbjct: 63 PSEESGWGEHHYFCVFPKKNKRQSDDNSENSVAKTKRTEPL----LRCFDLIVLGLSYKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
TD L+E+FE +G + A +K D +G+SKGFGF+RF S+++ ++ + K+H I R C+V
Sbjct: 119 TDQTLREFFETYGDVVKAEIKRDNTSGQSKGFGFVRFGSYDAQMRVLSKRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S IG + P KVFVG T D+ DLRE+F +G V++V+IPKPFR F+FVTF
Sbjct: 179 KVPSSRGIGNQVP--GKVFVGRCTEDIDAEDLREYFSQFGEVIEVVIPKPFRGFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPK---KKMNERQDNRNNFDRRNDRSRSPMSN 289
+ + L G+ IK V V A + KK + Q N N N+ P +N
Sbjct: 237 DPYIPQLLWGEDHIIKGVSVRVSSADKRVVPKKNQQIQSNNFNMHPGNNFRMHPANN 293
>gi|244790069|ref|NP_001156444.1| TAR DNA binding protein-like [Acyrthosiphon pisum]
gi|239792762|dbj|BAH72685.1| ACYPI004992 [Acyrthosiphon pisum]
Length = 333
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 150/263 (57%), Gaps = 4/263 (1%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHLY 64
+YI V ED MEIP E DGT+ +TL A +P GLK++++S YRA++L DG +
Sbjct: 6 KYIPVCECEGEDFMEIPLESDGTLSTATLSAYFPGVTGLKFRLDSYSPYRALRLYDGKFH 65
Query: 65 APLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYF 124
AP W +YC ++ + TDL+VLG+P+ ++ ++EYF
Sbjct: 66 APEGSWAGHKFYCVHPKGDKRKLEETDCKPSKGYHSMSCTDLIVLGLPYQLSETQMREYF 125
Query: 125 EQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIG 184
QFG L +K D +G SKGFGFIR+ + S KA+ ++H + NR +V+IP S K G
Sbjct: 126 VQFGKLVMVQIKRDA-SGNSKGFGFIRYEDYSSQAKALGQRHYVNNRWVEVKIPAS-KEG 183
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
V K+FVG LT D++E DL ++F YG + DV IPKPFR F FVTF SVA+SL
Sbjct: 184 YYSKVPHKIFVGRLTEDISEPDLSKYFSQYGEITDVFIPKPFRAFGFVTFNDASVAQSLC 243
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
+ +K + + EA PK N
Sbjct: 244 DEDHIVKGVSLHISEANPKSDQN 266
>gi|256080325|ref|XP_002576432.1| tar DNA-binding protein [Schistosoma mansoni]
Length = 296
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 152/262 (58%), Gaps = 6/262 (2%)
Query: 6 AQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHL 63
++I V + E +E+P EDDGT+LL+TLQ+ +P + GLKY R V+L DG L
Sbjct: 4 VKFIRVCEDDNESPIEVPIEDDGTVLLATLQSVFPKSTGLKYLAPESGCLRGVRLNDGKL 63
Query: 64 YAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN---TDLVVLGIPWTFTDNDL 120
+AP DGW VY C F + K Y ++ TDL+VL + W ++ L
Sbjct: 64 FAPSDGWV-HVYQCAFPRDNKRKGIEEKDIYSSKFKKLEEKKCTDLIVLNLAWKTDESTL 122
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF ++G L VK ++ SKG+GFIR++ ES + + ++H I R+CDVRIP S
Sbjct: 123 KEYFSRYGDLVTVQVKRHPDSNLSKGYGFIRYNDMESQIMCLSERHSIDGRLCDVRIPIS 182
Query: 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVA 240
G + V+ KV VG +T +T + LR++F +GAV+DV IPKPFR FAFV+FE VA
Sbjct: 183 KLEGDRQEVSRKVHVGGITESITATVLRDYFSQFGAVLDVFIPKPFRSFAFVSFEDPEVA 242
Query: 241 KSLIGQHVNIKDKKVVVMEATP 262
L+G+ I+ V + A P
Sbjct: 243 AELLGKDQVIEGVCVSIGSAVP 264
>gi|226484798|emb|CAX74308.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
gi|226484800|emb|CAX74309.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 344
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 181/335 (54%), Gaps = 21/335 (6%)
Query: 6 AQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGHL 63
A++I V + +E +E+P E+D T+LL+TL++ +P + GLKY +R V+L++G L
Sbjct: 4 AKFIRVCEDDDESPIEVPVEEDDTVLLATLKSVFPRSTGLKYLAPESGCFRGVRLSEGKL 63
Query: 64 YAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQ---NTDLVVLGIPWTFTDNDL 120
+AP DGW VY+C F + ++ ++ TDL+VL + + ++ L
Sbjct: 64 FAPPDGWV-HVYHCAFPKDNKRKGNGERDTFNSKFKKLEAKKCTDLIVLNLAYKTDESTL 122
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF ++G L +K + ++ SKGFGFIR+S +S + + ++H I R CDVRIP S
Sbjct: 123 KEYFSRYGDLVTVQIKRNPDSNASKGFGFIRYSDIQSQIMCLSERHNIDGRWCDVRIPIS 182
Query: 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVA 240
G + V+ KVFVG +T +T LR+HF +G V+DV IPKPFR FAFV+FE VA
Sbjct: 183 KLEGDRQEVSRKVFVGGITEFITADLLRDHFSQFGRVIDVFIPKPFRSFAFVSFEDPQVA 242
Query: 241 KSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSP--------MSNSRQ 292
L+G+ I+ + + A PK + + + S++P M+N
Sbjct: 243 TDLLGKDQVIEGVTLSIGSAVPKLPPQQNRYSSLYPSSYYGNSQNPWAWPYAPAMNNHGL 302
Query: 293 YGGGNGYYDNRQQQQGGYN---NKRRRNDYDDWHH 324
+G Y+ Q GYN + N++ +HH
Sbjct: 303 RDFSHGMYNATQ----GYNMPSHSPLENNFSSYHH 333
>gi|118344010|ref|NP_001071830.1| Tardbp protein [Ciona intestinalis]
gi|70571316|dbj|BAE06721.1| Ci-Tardbp [Ciona intestinalis]
Length = 440
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 162/279 (58%), Gaps = 33/279 (11%)
Query: 27 DGTILLSTLQAQYPSAIGLKYKVESRY--RAVKLADGHLYAP--LDGWQDRVYYCTFDAS 82
DGT+ LS++ AQ+P A GLKY+ + + R VKL +G LY P W++ +Y +
Sbjct: 47 DGTLYLSSVTAQFPGACGLKYRNDETHTLRGVKLVEGILYPPDPQHMWKNYLYVVVYPKG 106
Query: 83 GNSSATQSKRSYPDNSGPVQN---------------TDLVVLGIPWTFTDNDLKEYFEQF 127
GN + + +PDN +++ +DL+VLG+PW ++DLKEYF ++
Sbjct: 107 GN----KVRNDFPDNKRKMEDEDVQSIRSKRPAQKCSDLIVLGLPWKIAEDDLKEYFAKY 162
Query: 128 GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEE 187
G L VK D+N G+S+G+GFIRFSS+E + ++H IG R CDV+IP S +
Sbjct: 163 GELVMVLVKRDEN-GKSRGYGFIRFSSYEVQELVLSQRHIIGERWCDVKIPHSKD--QKP 219
Query: 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQH 247
V+SK+FVG +T +T+ ++R++FE +G V DV IP PFR FAFVTF +VA +LIG+
Sbjct: 220 TVSSKIFVGRITEKMTKDEIRQYFEQFGDVDDVYIPIPFRAFAFVTFRDSNVAANLIGED 279
Query: 248 VNIKDKKVVVMEATPK-------KKMNERQDNRNNFDRR 279
I V + A PK K NER N+ F+ R
Sbjct: 280 QVINGVSVYINTADPKGSKETAMKPGNERWPNQQGFNPR 318
>gi|195327757|ref|XP_002030584.1| GM24493 [Drosophila sechellia]
gi|194119527|gb|EDW41570.1| GM24493 [Drosophila sechellia]
Length = 343
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 163/265 (61%), Gaps = 18/265 (6%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +E+P+E+DGT+LLSTLQAQ+P GL+Y+ VE++ R V+ +G +Y+
Sbjct: 3 FVQVSEKEGDEPIELPAEEDGTLLLSTLQAQFPDCSGLQYRIVETKSLRGVRSNEGRMYS 62
Query: 66 PLD--GWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
P + W + Y+C F D + +S ++KR+ P ++ DL+VLG+ +
Sbjct: 63 PSEESDWGEYHYFCVFPKKNKRQSDDNSENSVAKTKRTEP----LLRCFDLIVLGLSYKT 118
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
TD +E+FE +G + A +K D +G+SKGFGF+RF S+ + ++ + K+H I R C+V
Sbjct: 119 TDQTFREFFETYGDVVKAEIKRDNTSGQSKGFGFVRFGSYNAQMRVLSKRHLIDGRWCEV 178
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
++P S IG + P KVFVG T D+ DLRE+F +G V++V+IPKPFR F+FVTF
Sbjct: 179 KVPSSRGIGNQVP--GKVFVGRCTEDIGAEDLREYFSQFGDVIEVVIPKPFRGFSFVTFL 236
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEA 260
+ + L G+ IK V V A
Sbjct: 237 DPYIPQLLWGEDHIIKGVSVRVSSA 261
>gi|390341916|ref|XP_789716.3| PREDICTED: TAR DNA-binding protein 43-like [Strongylocentrotus
purpuratus]
Length = 505
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 160/272 (58%), Gaps = 20/272 (7%)
Query: 20 MEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYAPL-DG-WQDRVY 75
+E+P E DGTI+LST+ AQ+PSA GLKY+ R +++ D +YAP DG W+D +Y
Sbjct: 19 IELPVEQDGTIMLSTIIAQFPSATGLKYRNPQSQGIRGLRVIDERVYAPRSDGVWEDLIY 78
Query: 76 YCTFDAS---GNSSATQSKRSYPDN-SGPVQNT--------DLVVLGIPWTFTDNDLKEY 123
TF S ++++KR DN PV T DL+VLG+ + TD ++KEY
Sbjct: 79 VATFPKGIVLEQSISSENKRKGEDNRENPVGKTRKIEAKTVDLIVLGLDYNTTDEEMKEY 138
Query: 124 FEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKI--GNRICDVRIPEST 181
F ++G L A+VK D T +SKGFGFIR+ +S + K+HKI +R C+V+ P +
Sbjct: 139 FGKYGELLMAHVKRDPVTQKSKGFGFIRYKDVDSQEGVVEKRHKIDLSSRWCEVKYPNTG 198
Query: 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAK 241
G +P K+F+G LT D T+ DL + F YG VVDV IPKPFR FAFVT A
Sbjct: 199 --GAVQPSRKKLFIGRLTSDTTKEDLFDIFSKYGEVVDVFIPKPFRGFAFVTMNSSKDAD 256
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
++G+ + IK V + A PK +M ++ +R
Sbjct: 257 EIVGEDLIIKGNSVYINRAEPKARMMGKEGDR 288
>gi|156395208|ref|XP_001637003.1| predicted protein [Nematostella vectensis]
gi|156224112|gb|EDO44940.1| predicted protein [Nematostella vectensis]
Length = 291
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 151/270 (55%), Gaps = 17/270 (6%)
Query: 8 YIYVTNN--LEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHL 63
Y+ V ++ + +EI +E+DGT+LLS + Q+P A GL+Y+ +R V+L + L
Sbjct: 5 YVRVVDDETCPDQAIEIEAEEDGTLLLSNVNGQFPGACGLRYRNPETQAFRGVRLVEDVL 64
Query: 64 YAPL-DGWQDRVYYCTFDASGNSSATQSKRSYPDNSGP---------VQNTDLVVLGIPW 113
Y P DGW D ++ + +S++ + P P V DL+VLG+P+
Sbjct: 65 YPPFEDGWGDTLFLVVPSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPY 124
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T++++KEYF +FG ++F VK+D NT RS+GFGF+RF E A + H+I R+C
Sbjct: 125 ATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLC 184
Query: 174 DVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
+VR+P + E V K+FVG L TE L E+F +G V DV IPKPFR F FVT
Sbjct: 185 EVRLPRPKE---ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVT 241
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
F +AK ++ Q+ I + + A PK
Sbjct: 242 FASGELAKKVLSQNHRISGSLLNITFAEPK 271
>gi|47229790|emb|CAG06986.1| unnamed protein product [Tetraodon nigroviridis]
Length = 468
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 169/348 (48%), Gaps = 86/348 (24%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V E+ MEIPSEDDGT+ LST+ AQ+P A GL+++ V R V+L +G L+A
Sbjct: 5 YIRVAEEENEEPMEIPSEDDGTVRLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTFDASGN--------SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTD 117
P +GW + VY + SSA + KR G ++ +DL+VLG+PW T+
Sbjct: 65 PENGWGNVVYVVNYPKDNKRKMEEIDASSAVKMKR------GDMKTSDLIVLGLPWKTTE 118
Query: 118 NDLKEYFEQFG----------TLEFAN--------------------VKVDKNTGRSKGF 147
DLK+YF FG TL + N VK + TG SKGF
Sbjct: 119 QDLKDYFSTFGEVIMVQVCLFTLLYHNIQKSLFLLYTFFFFFFFKFQVKREGRTGSSKGF 178
Query: 148 GFIRFSSHESALKAMLKKHKIGNRICDVRIP---------------------ESTKIG-- 184
GF+RF+ +++ K + ++H I R CD + P S +G
Sbjct: 179 GFVRFAEYDAQEKVISQRHMIDGRWCDCKFPNSKVNMVMPIHIYSLNIFSSVSSVFVGNC 238
Query: 185 ---------------TEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE 228
+EP+ S KVFVG T D+T DLR+ F YG V DV IPKPFR
Sbjct: 239 LISGVLFFHLLKQQPLDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRA 298
Query: 229 FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
FAFVTF D VA+SL G+ + IK V + A PK N + D F
Sbjct: 299 FAFVTFADDQVAQSLCGEDLIIKGVSVHISNAEPKHG-NRQYDRTTRF 345
>gi|395841109|ref|XP_003793391.1| PREDICTED: TAR DNA-binding protein 43 [Otolemur garnettii]
Length = 244
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 148/275 (53%), Gaps = 53/275 (19%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKE 122
L+AP GW + VY +YP +
Sbjct: 61 LHAPDAGWGNLVYVV---------------NYPKD------------------------- 80
Query: 123 YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTK 182
+VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S K
Sbjct: 81 ---------ILSVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-K 130
Query: 183 IGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAK 241
+EP+ S KVFVG T D+T+ +LR+ F YG VVDV IPKPFR FAFVTF D VA+
Sbjct: 131 QSLDEPLRSRKVFVGRCTEDMTDDELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQ 190
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
SL G+ + IK V + A PK N + + F
Sbjct: 191 SLCGEDLIIKGVSVHISNAEPKHNSNRQLERSGRF 225
>gi|405965286|gb|EKC30669.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 380
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 154/279 (55%), Gaps = 41/279 (14%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVES--RYRAVKLADGH 62
MAQYI V + E+ +EIPSED+G++LLSTL AQ+P A G+KY+ S +R ++L+DG
Sbjct: 1 MAQYIQVCDEEGEEPIEIPSEDEGSLLLSTLAAQFPGACGMKYRNPSTGNFRGIRLSDGM 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPV---------QNTDLVVLGIPW 113
L+ P W + VY F ++ + + + P+N P+ + +DL+VLG+PW
Sbjct: 61 LHPPDGVWGNFVYIVVFPK--DNIKRKGEEAVPEN--PLAKNKCVDKQRCSDLIVLGLPW 116
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
++DL+ YF +G L VK D TG SKGFGFIRF ++S
Sbjct: 117 KSNEDDLRRYFSTYGELLLVQVKRDPKTGASKGFGFIRFLEYDS---------------- 160
Query: 174 DVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
+ G E V+ KVFV T D+T DL+ +F YG V DV IPKPFR FAFVT
Sbjct: 161 --------QEGAAEMVSRKVFVARCTEDITADDLKSYFSKYGEVSDVFIPKPFRAFAFVT 212
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
F +A+SL G+ IK V V A PK ++R DN
Sbjct: 213 FADHRIARSLCGEDHIIKGASVHVTTAAPKN--SDRNDN 249
>gi|390360718|ref|XP_780859.3| PREDICTED: TAR DNA-binding protein 43-like [Strongylocentrotus
purpuratus]
Length = 476
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 5 MAQYIYVTN--NLEEDGMEIPSE----DDGTILLSTLQAQYPSAIGLKYK--VESRYRAV 56
MA YI T N E +E+P+E + +ILLST+ AQ+P A GLKY+ R +
Sbjct: 1 MADYIQTTEDENDPEATIELPAEPPSPEGASILLSTIVAQFPGATGLKYRNPESGTMRGL 60
Query: 57 KLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYP----DNSGPVQNTDLVVLGIP 112
++ +G + AP WQ+ +Y TF N R P + + +DL+VLG+
Sbjct: 61 RVVEGRVMAPDGVWQNHLYVVTFPKE-NKRKGDDTRELPVGKTRKTDDRRTSDLIVLGLD 119
Query: 113 WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRI 172
+ T +K+YF Q+G L +K D G+SKGFGFIR+ ES K+HKI +R
Sbjct: 120 FNTTVEGMKDYFSQYGELVMTQLKKDPK-GKSKGFGFIRYRDIESQNAVNNKRHKIDDRW 178
Query: 173 CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
C+V+ P+S E+P K+FVG L+PD+ E D+ ++F G V DV IPK FR FAFV
Sbjct: 179 CEVKYPDSQ---VEQPEKRKLFVGRLSPDVKEDDIYQYFAKIGEVTDVFIPKEFRGFAFV 235
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
T E +A+SLIGQ I V++ A PK K +
Sbjct: 236 TLENAQIAQSLIGQDHIINGNSVLINYADPKNKQGQ 271
>gi|194388816|dbj|BAG61425.1| unnamed protein product [Homo sapiens]
Length = 330
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 121/193 (62%), Gaps = 10/193 (5%)
Query: 79 FDASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
D + SSA + KR+ VQ T DL+VLG+PW T+ DLKEYF FG + VK
Sbjct: 1 MDETDASSAVKVKRA-------VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 53
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KVFVG 196
D TG S+GFGF+RF+ +E+ +K M ++H I R CD ++P S K +EP+ S KVFVG
Sbjct: 54 DLKTGHSRGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-KQSQDEPLRSRKVFVG 112
Query: 197 SLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +A+SL G+ + IK V
Sbjct: 113 RCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVH 172
Query: 257 VMEATPKKKMNER 269
+ A PK N +
Sbjct: 173 ISNAEPKHNSNRQ 185
>gi|119592075|gb|EAW71669.1| TAR DNA binding protein, isoform CRA_a [Homo sapiens]
Length = 367
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 146/277 (52%), Gaps = 67/277 (24%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + M+++ +
Sbjct: 114 KTTEQDLKEYFSTFGEV------------------------------LMVQQSQ------ 137
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
+EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 138 ------------DEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 185
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER 269
TF D +A+SL G+ + IK V + A PK N +
Sbjct: 186 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQ 222
>gi|427795623|gb|JAA63263.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+DL+VLG+PW ++ DL++YFE FG + A VK D TG+SKGFGFIRFSS+ES ++A+
Sbjct: 42 SDLIVLGLPWKTSEQDLRQYFETFGEVLMAQVKKDPKTGQSKGFGFIRFSSYESQVRALS 101
Query: 164 KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
K+H I R CDV+IP S K G ++ KVFVG T DL+ DLR++F YG V DV IP
Sbjct: 102 KRHLIDGRWCDVKIPNS-KDGQASELSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIP 160
Query: 224 KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
KPFR FAFVTF VA+SL G+ I+ + V A PK +
Sbjct: 161 KPFRAFAFVTFVDPDVAQSLCGEDHIIRGTSIHVSNAVPKSE 202
>gi|350596610|ref|XP_003361409.2| PREDICTED: TAR DNA-binding protein 43-like, partial [Sus scrofa]
Length = 259
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 123/198 (62%), Gaps = 11/198 (5%)
Query: 79 FDASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
D + SSA + KR+ VQ T DL+VLG+PW T+ DLKEYF FG + VK
Sbjct: 5 MDETDASSAVKVKRA-------VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 57
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KVFVG 196
D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S K +EP+ S KVFVG
Sbjct: 58 DIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-KQSPDEPLRSRKVFVG 116
Query: 197 SLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
T D+T +L++ F YG VVDV IPKPFR FAFVTF D VA+SL G+ + IK V
Sbjct: 117 RCTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVH 176
Query: 257 VMEATPKKKMNERQDNRN 274
+ A PK N RQ R+
Sbjct: 177 ISNAEPKHNSN-RQLERS 193
>gi|313227708|emb|CBY22856.1| unnamed protein product [Oikopleura dioica]
Length = 442
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 190/368 (51%), Gaps = 49/368 (13%)
Query: 4 IMAQ-YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLAD 60
I++Q YI V E++ +E+ E+DG + +STL +Q+ A GL+++ R V+L +
Sbjct: 14 ILSQGYIVVKEEFEDEPLELELEEDGNLRMSTLISQFSGACGLRFRNVATGAMRGVRLHN 73
Query: 61 GHLYAP--LDGW-QDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN----TDLVVLGIPW 113
P +GW D V+ + + SA +++ P S P +N +DL VL IPW
Sbjct: 74 DLFLPPNGAEGWPTDVVFSVVYSKKPDKSAKKAENGQPQVSVPRRNGNKPSDLAVLSIPW 133
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRI 172
T DLK YF +FG + F+++KVD TG+S+GFGFIRF +ES L AM H++ R
Sbjct: 134 QTTAEDLKMYFSRFGKVVFSDIKVDAETGKSRGFGFIRFEHYESQLAAMECPIHELDGRQ 193
Query: 173 CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
+R+ + + G + KVFVG LT DL DL+E+F +G + ++ IP+PFR FAF+
Sbjct: 194 IVLRLTKKGETGNQ---LRKVFVGRLTTDLNRHDLQEYFSQFGQITEITIPQPFRSFAFI 250
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ 292
TF + A +++ Q IK VV A P QD+RN RR + Q
Sbjct: 251 TFADSNDAIAILDQDHLIKGTSVVTRSADPI------QDDRN---RRTN----------Q 291
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSPDVLQAVVSKAVSEVL 352
GNG Q Q + N R ++ NS +V P +L V +A+++V+
Sbjct: 292 NANGNGL-----QNQARFQNSRTFSN----------NSAETSVDP-MLMKQVQQALNQVI 335
Query: 353 NVQKAIDE 360
A DE
Sbjct: 336 QPSSAQDE 343
>gi|256080309|ref|XP_002576424.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645465|emb|CCD59817.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 321
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 127/236 (53%), Gaps = 14/236 (5%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
TDL+VL +PW ++ L++YF Q+G L +K D T +SKG+GFIRF+ + + + +
Sbjct: 12 TDLIVLNLPWRADEDTLRDYFSQYGDLVMIQIKRDPVTQQSKGYGFIRFADYTAQVMCLA 71
Query: 164 KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
++H I NR CDVRIP S G + V+ KV +G LT D++ LR+HF YG V DV IP
Sbjct: 72 ERHTIENRQCDVRIPISKMEGDRQEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIP 131
Query: 224 KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN----FDRR 279
KPFR FAF+TF+ VA SL+G+ I+ ++ V A PK + RQ N NN
Sbjct: 132 KPFRSFAFITFDDPEVAASLLGKDQEIQGVRISVGSAVPKLPPSARQSNTNNQRIPVTSM 191
Query: 280 NDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
+S M ++Q+G Y Q N Y H G S N ++
Sbjct: 192 QAALQSTMMGTQQWGAWPPAYGGMVQN----------NRYGGQHSSGKGGSRNGSM 237
>gi|344257835|gb|EGW13939.1| TAR DNA-binding protein 43 [Cricetulus griseus]
Length = 199
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 19/197 (9%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVA 190
D ++P S K+ PV
Sbjct: 174 DCKLPNS-KVFCSFPVC 189
>gi|348041335|ref|NP_001231687.1| TAR DNA-binding protein 43 isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 353
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 114/184 (61%), Gaps = 16/184 (8%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 4 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 63
Query: 65 APLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
AP +GW + VY + D + SSA + KR+ + +DL+VLG+PW T
Sbjct: 64 APENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAV------TKTSDLIVLGLPWKTT 117
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD +
Sbjct: 118 EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK 177
Query: 177 IPES 180
+P S
Sbjct: 178 LPNS 181
>gi|307166909|gb|EFN60813.1| TAR DNA-binding protein 43 [Camponotus floridanus]
Length = 514
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 14/189 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V + E+ +E+P+EDD T+LL+TL AQ+P GLKY+ ESR R V+L DG
Sbjct: 1 MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWT 114
L+ P +GW +Y+C F D + +S ++KR ++ TDL+VLG+PW
Sbjct: 61 LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRM----ETKLRCTDLIVLGLPWK 116
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
T+ +L+EYFE FG + A VK D +G+SKGFGFIRF S+ES L+ + ++H I R CD
Sbjct: 117 TTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCD 176
Query: 175 VRIPESTKI 183
V++P S I
Sbjct: 177 VKVPNSKNI 185
>gi|322780891|gb|EFZ10120.1| hypothetical protein SINV_80889 [Solenopsis invicta]
Length = 511
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 20/199 (10%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGH 62
M+ YI V + E+ +E+P+EDD T+LL+TL AQ+P GLKY+ ESR R V+L DG
Sbjct: 1 MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR 60
Query: 63 LYAPLDGWQDRVYYCTF-------DASGNSSATQSKRSYPDN-----------SGPVQNT 104
L+ P +GW +Y+C F D + N +++KR DN ++ T
Sbjct: 61 LHPPENGWGKAIYFCVFPKVTSRLDVNVNYVFSENKRKSDDNLENSTAKTKRMETKLRCT 120
Query: 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164
DL+VLG+PW T+ +L+EYFE FG + A VK D +G+SKGFGFIRF S+ES L+ + +
Sbjct: 121 DLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQ 180
Query: 165 KHKIGNRICDVRIPESTKI 183
+H I R CDV++P S I
Sbjct: 181 RHMIDGRWCDVKVPNSKNI 199
>gi|260793328|ref|XP_002591664.1| hypothetical protein BRAFLDRAFT_223392 [Branchiostoma floridae]
gi|229276873|gb|EEN47675.1| hypothetical protein BRAFLDRAFT_223392 [Branchiostoma floridae]
Length = 165
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+Q +DL+VLG+P+ T+ +L+EY EQ+G + +K D+ TG SKGFGF++F+ +E LK
Sbjct: 1 MQCSDLIVLGLPFKTTEQELREYMEQYGEVVMVQIKKDRMTGNSKGFGFVQFAEYEVQLK 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
+ ++H I CDV IP S G +VF+G T D++ DLR +F+ +G V DV
Sbjct: 61 VISQRHMIDGNWCDVTIPNSENEGVIVH-ERRVFIGRCTEDISAEDLRAYFQRFGEVTDV 119
Query: 221 LIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+IPKPFR FAFVTF+ A+SL G+H IK V V TPK
Sbjct: 120 VIPKPFRAFAFVTFQDGETAQSLCGEHYTIKGASVHVSAYTPK 162
>gi|224613250|gb|ACN60204.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 294
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 5/168 (2%)
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
PW ++ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ K + ++H I R
Sbjct: 1 PWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQDKVISQRHMIDGR 60
Query: 172 ICDVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFA 230
CD ++P S K G +EP+ S KVFVG T D++ +LR+ F YG V DV IPKPFR FA
Sbjct: 61 WCDCKLPNS-KQGPDEPMRSRKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPFRAFA 119
Query: 231 FVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK---KKMNERQDNRNN 275
FV+F D VA SL G+ + IK V + A PK ++M ER N
Sbjct: 120 FVSFADDQVASSLCGEDLIIKGVSVHISNAEPKHGSRQMMERAGRFGN 167
>gi|340377277|ref|XP_003387156.1| PREDICTED: TAR DNA-binding protein 43-like [Amphimedon
queenslandica]
Length = 374
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 154/300 (51%), Gaps = 48/300 (16%)
Query: 5 MAQYIYVTNNLEEDG-----MEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVK 57
M+ Y+ V+ E++G +E+P+E DGT++LS +Q+Q+ A GLKYK +RAV+
Sbjct: 1 MSGYVIVSKE-EKEGEQSHVVELPTEPDGTLMLSVVQSQFEGATGLKYKNPESGSWRAVR 59
Query: 58 LADGHLYAPLDGW------------------------------QDRVYY--CTFDASGNS 85
++D L+ P GW Q R ++ + A
Sbjct: 60 VSDNVLHPPESGWGRLTFVVVGSVKEQESGEREGIRGPRGMAGQKRSHHDDAYYSAKALR 119
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
++QS Y + GP + DL+VLG+ + + ++++YF+ FG +E VK D + +S+
Sbjct: 120 QSSQSPPRYHQSFGP--SGDLIVLGLRYDVDEQEMRDYFQHFGEVEQVEVKRDHKSHQSR 177
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLT--PDLT 203
GFGF+RF K M H I R C++R P + G+ + K F+G L P+ T
Sbjct: 178 GFGFLRFKDPAVQSKVMTMSHTIKGRRCELRPPRKSP-GS---LPCKFFIGCLPSDPETT 233
Query: 204 ESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+LR +F YG++ DV IPKP+R F FVTF A+S+ + +++ ++ V A PK
Sbjct: 234 TEELRAYFSQYGSLSDVYIPKPYRGFGFVTFLDGYDAQSMYKEVHVLRNSRLNVSIAEPK 293
>gi|268532530|ref|XP_002631393.1| C. briggsae CBR-TAG-169 protein [Caenorhabditis briggsae]
Length = 412
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 149/283 (52%), Gaps = 50/283 (17%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL--ADGH 62
++I V + E+ +E+P+ DDG++L++TLQA +P A GLKYK RAV++ +
Sbjct: 46 EFITVQDPTGEEPIELPT-DDGSVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLR 104
Query: 63 LYAPLDGWQDRVYYCTFD-------ASGNSSATQS-----------------------KR 92
L AP DGW+D+ + A ++ AT + KR
Sbjct: 105 LLAPADGWEDKTFNVIIASQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKR 164
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
+ +S PV DL+VLG+ + D ++YFE+ GT+ F +K K+ G SKGFGF+R
Sbjct: 165 AVERDSQPV---DLIVLGVDFKTGDECFQKYFEEIGTVVFCEIK-RKSDGSSKGFGFVRM 220
Query: 153 SSHESALKAM-LKKHKIGNRICDVRIPEST-KIGTEEPVASKVFVGSLTPDLTESDLREH 210
+S K + + +H I R CDV++P+ K G P S++FVG LT + E+ LR+
Sbjct: 221 ASVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQG--RPSISRIFVGRLTDKVDENQLRKV 278
Query: 211 F----EYY---GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246
F + Y V DV IPKPFR FAFVT A+S++ +
Sbjct: 279 FGDEAKVYVETAVVTDVFIPKPFRGFAFVTLSSAEAAESIVSK 321
>gi|183178950|gb|ACC43958.1| TAR-protein [Philodina roseola]
Length = 288
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 141/284 (49%), Gaps = 41/284 (14%)
Query: 7 QYIYVTNNLEEDG--MEIPSED--DGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLAD 60
+I V + +D +EIP + D + LSTL AQ+ LKY+ S +R V++ D
Sbjct: 1 MFIRVVDESTDDNEIVEIPLDGGADAFLSLSTLAAQFQGVTALKYRHPETSVWRGVRVVD 60
Query: 61 GHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNT---------------- 104
G LY P W + Y T S +S KR N Q +
Sbjct: 61 GKLYHPDGRWDPDMVYVTV-YSKSSPTIDVKRKGDQNDEFAQESIGEIKEECENDPNRRC 119
Query: 105 -DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
DL+VLGI + +LE A++K D N G+S+GFGFIRF ++ES L +
Sbjct: 120 VDLIVLGI--------------SYRSLE-ADIKRDAN-GQSRGFGFIRFKNYESQLAVIN 163
Query: 164 KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
K+H I R DV+IP+S E A K+FV L ++T DLR++F YGA+ DV IP
Sbjct: 164 KRHFIDGRHVDVKIPDSKTSVHEPECARKIFVARLPDNITPDDLRQYFSKYGAIKDVYIP 223
Query: 224 KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
KP R FAFVTF ++ + L G H+ I V V A PK K +
Sbjct: 224 KPARSFAFVTFHDSNIVRQLFGTHI-IHGCSVTVGPAEPKNKTS 266
>gi|324509835|gb|ADY44122.1| TAR DNA-binding protein 43 [Ascaris suum]
Length = 472
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 147/302 (48%), Gaps = 49/302 (16%)
Query: 8 YIYVTNNLEEDGMEIPSE-DDGTILLSTLQAQYPSAIGLKYK----VESRYRAVKLADGH 62
Y+ VT++ + D ME+P+ +DG++ LSTL YP A GLK+K SR V +
Sbjct: 34 YVVVTDSEDGDRMELPTHPEDGSLGLSTLTHAYPGAQGLKFKNPQTGASRALLVDASGTR 93
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN----SG------------------- 99
P GW D+V++ + +S ++ D SG
Sbjct: 94 FMPPAGGWNDKVFFVIYPQRSSSDQNPKRKKMMDECEEESGSEDTQGGYHGSGGGQLTAK 153
Query: 100 ------PVQNT--DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIR 151
P + + DL+VLGI + T+ +K YFE FG + ++K D G SKGFGF+R
Sbjct: 154 QKRIEEPTEKSCVDLIVLGISYKATEETVKAYFETFGEVLMFDLKRDA-AGNSKGFGFVR 212
Query: 152 FSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
+++ L+ + K H+I R C+V+IP S K +P+ ++VF+G + +T DLR
Sbjct: 213 MKDYDAQLRVLAKCHHEIDGRRCEVKIPLS-KGEVSQPLITRVFLGRVPESMTADDLRSF 271
Query: 211 FEYYGA-------VVDVLIPKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEAT 261
F A V DV IP+PFR FAF+ VA +I G +V IK + V A
Sbjct: 272 FNEEAAKYDPEATVTDVYIPRPFRSFAFINISSADVATRIISKGDYV-IKGSSIAVCAAA 330
Query: 262 PK 263
P+
Sbjct: 331 PR 332
>gi|324504792|gb|ADY42066.1| TAR DNA-binding protein 43 [Ascaris suum]
Length = 446
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 156/319 (48%), Gaps = 43/319 (13%)
Query: 20 MEIPSEDDGTILLSTLQAQYPSAIGLKYKVESR--YRAVKLADGH--LYAPLDGWQDRVY 75
+E+P ++DG + L+TL+ +P+AIGLK+K E+ YR + + D + P GW R Y
Sbjct: 47 LEVPVDEDGALRLATLEHSFPNAIGLKFKNETNGVYRTLAVNDESRTILQPKGGWGTRRY 106
Query: 76 YCTFDASGNS-----------SATQSKRSYPDNS--------GPVQNTDLVVLGIPWTFT 116
F A KR+ D S PV DLVVL I + T
Sbjct: 107 VAIFRPEAPPVKALKRPACPEEAISEKRNALDESQSGERHLRAPV---DLVVLNIDFGTT 163
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ L +YFE+FG +EFA +K ++ TG+SKG+GFI+ S+ E K + H I R+ +VR
Sbjct: 164 KDSLVKYFEKFGKVEFAEIKTERATGKSKGYGFIKMSTLEEQQKVLETGHFIDGRVVEVR 223
Query: 177 IPEST-----KIGTEEPVASKVFVGSLTPDLTESDLREHFEY-------YGAVVDVLIPK 224
IP T K + +++K++VG + + T DL ++F + V V+IP
Sbjct: 224 IPLRTCDPDAKKARPDLLSTKIYVGRVPDEFTVQDLFKYFSEKVREMSPHARVDRVIIPT 283
Query: 225 PFREFAFVTFELDSVAKSLIG-QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRS 283
P R FAF+TF +V K I Q V I + + P+K+ + N N++
Sbjct: 284 PRRGFAFITFNDANVTKRFIEMQDVVIGGVSMAISYPAPRKETEDFDMNANDYYSGGFTP 343
Query: 284 RSPMS----NSRQYGGGNG 298
P + S YGGG+G
Sbjct: 344 GMPGAYHSFPSDSYGGGHG 362
>gi|194381506|dbj|BAG58707.1| unnamed protein product [Homo sapiens]
Length = 298
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KV 193
VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S K +EP+ S KV
Sbjct: 19 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-KQSQDEPLRSRKV 77
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDK 253
FVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +A+SL G+ + IK
Sbjct: 78 FVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGI 137
Query: 254 KVVVMEATPKKKMNER 269
V + A PK N +
Sbjct: 138 SVHISNAEPKHNSNRQ 153
>gi|392891074|ref|NP_001254189.1| Protein TDP-1, isoform c [Caenorhabditis elegans]
gi|262225497|emb|CBH29662.1| Protein TDP-1, isoform c [Caenorhabditis elegans]
Length = 414
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 156/307 (50%), Gaps = 50/307 (16%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADG--H 62
++I V + ++ +E+P+ D G +L++TLQA +P A GLKYK RAV++
Sbjct: 46 EFITVQDPNGDEPIELPTVD-GVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 63 LYAPLDGWQDRVYYCTFD-------ASGNSSATQS-----------------------KR 92
L AP DGW+++ ++ A ++ AT + KR
Sbjct: 105 LIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKR 164
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
+ +S PV DL+VLG+ + TD ++YFE GT+ F +K K+ G SKGFGF+R
Sbjct: 165 AVERDSQPV---DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIK-RKSDGNSKGFGFVRM 220
Query: 153 SSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEE--PVASKVFVGSLTPDLTESDLRE 209
SS K + + +H I R CDV++P+ + ++ P S++FVG LT + E LR+
Sbjct: 221 SSVGEQNKVLAIPQHMIDGRRCDVKVPDGRSLQDKQGRPSISRIFVGRLTDKVDEHQLRK 280
Query: 210 HF-----EYY--GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261
F Y V DV IPKPFR FAFVT A+ ++ + + + V + A
Sbjct: 281 VFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQ 340
Query: 262 PKKKMNE 268
P+++ N+
Sbjct: 341 PREENNQ 347
>gi|393910800|gb|EJD76049.1| hypothetical protein LOAG_16935 [Loa loa]
Length = 487
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 44/300 (14%)
Query: 7 QYIYVTNNLEEDGMEIPS-EDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL--ADG 61
+Y+ V+ + + +E+P +D ++ L+TL +P A GLKYK + RA+ +
Sbjct: 42 EYVVVSETEDSERLELPLLPEDCSLSLNTLVHAFPGAHGLKYKNSITGASRALLMDPQGT 101
Query: 62 HLYAPLDGWQDRVYYCTF-------------------DASGNSSATQSKRS--------- 93
AP DGW+++ + + + G+S +Q R
Sbjct: 102 RFLAPPDGWKNKTFIVIYPHRGSGDQNTKRKKMMDECEQEGDSEDSQGGRGGQFTAKQKR 161
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
D SG DL+VLG+P+ + K YFE FG + ++K D N G SKGFGF+R +
Sbjct: 162 IEDPSGEKACIDLIVLGLPFKTSAETCKAYFENFGEVVLFDLKTDPN-GASKGFGFVRMA 220
Query: 154 SHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
++ + + ++ H+I R C VRIP S K T PV +++FVG + T LR+ F
Sbjct: 221 DFDAQQRILTQQTHEIDGRRCQVRIPLS-KGDTGSPVVTRIFVGRVQEKTTVDTLRKFFN 279
Query: 213 YYGA-------VVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKD-KKVVVMEATPKK 264
A V DV IP+PFR FAFV F +VAK L+ Q I D V V A P++
Sbjct: 280 GEAAKIDPNAFVTDVFIPRPFRSFAFVNFSSPAVAKELMRQGDFIIDGSSVAVSAAAPRE 339
>gi|402590089|gb|EJW84020.1| hypothetical protein WUBG_05068 [Wuchereria bancrofti]
Length = 480
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 44/300 (14%)
Query: 7 QYIYVTNNLEEDGMEIPS-EDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL--ADG 61
+Y+ V+ E + +E+P +D ++ L+TL +P A GLKYK + RA+ +
Sbjct: 35 EYVVVSETEESERLELPLLPEDCSLSLNTLVHAFPGAHGLKYKNSITGASRALLMDPQGT 94
Query: 62 HLYAPLDGWQDRVYYCTF-------------------DASGNSSATQSKRS--------- 93
AP DGW+++ + + + G+S +Q R
Sbjct: 95 RFLAPPDGWKNKTFIVIYPHRGSGDQNTKRKKMMDECEQEGDSEDSQGGRGGQFTAKQKR 154
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
D SG DL+VLG+P+ + K YFE FG + ++K D +G SKGFGF+R +
Sbjct: 155 IEDPSGEKACIDLIVLGLPFKTSAETCKAYFENFGEVVLFDLKTDP-SGASKGFGFVRMA 213
Query: 154 SHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
++ + + ++ H+I R C VRIP S K T PV +++FVG + T LR+ F
Sbjct: 214 DFDAQQRILTQQTHEIDGRRCQVRIPLS-KGDTGSPVVTRIFVGRVQEKTTVDTLRKFFN 272
Query: 213 YYGA-------VVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKD-KKVVVMEATPKK 264
A V DV IP+PFR FAFV F +VAK L+ Q I D V V A P++
Sbjct: 273 SEAAKIDPNAFVTDVFIPRPFRSFAFVNFSSPAVAKELMRQGDFIIDGSSVAVSAAAPRE 332
>gi|308509642|ref|XP_003117004.1| CRE-TDP-1 protein [Caenorhabditis remanei]
gi|308241918|gb|EFO85870.1| CRE-TDP-1 protein [Caenorhabditis remanei]
Length = 409
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 145/283 (51%), Gaps = 50/283 (17%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADG--H 62
++I V + E+ +E+P+ D G +L+STLQA +P A GLKYK RAV++
Sbjct: 49 EFITVQDPSGEEPIELPTVD-GIVLMSTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 107
Query: 63 LYAPLDGWQDRVYYCTFD-------ASGNSSATQS-----------------------KR 92
L AP DGW+++ ++ A ++ AT + KR
Sbjct: 108 LLAPTDGWENKTFHVIIASQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKR 167
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
+ S PV DL+VLG+ + D ++YFE GT+ F +K K+ G SKGFGF+R
Sbjct: 168 AVERESQPV---DLIVLGVDFKTGDECFQKYFEDIGTVVFCEIK-RKSDGSSKGFGFVRM 223
Query: 153 SSHESALKAM-LKKHKIGNRICDVRIPEST-KIGTEEPVASKVFVGSLTPDLTESDLREH 210
+S K + + +H I R CDV++P+ K G P S++FVG LT + E+ LR+
Sbjct: 224 ASVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQG--RPSISRIFVGRLTDKVDENQLRKV 281
Query: 211 F----EYY---GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246
F + Y V DV IPKPFR FAFVT A+S++ +
Sbjct: 282 FGDEAKTYVETAVVTDVFIPKPFRGFAFVTLSSAEAAESIVSK 324
>gi|71989295|ref|NP_001022166.1| Protein TDP-1, isoform a [Caenorhabditis elegans]
gi|3877075|emb|CAA90120.1| Protein TDP-1, isoform a [Caenorhabditis elegans]
Length = 411
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 51/306 (16%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADG--H 62
++I V + ++ +E+P+ D G +L++TLQA +P A GLKYK RAV++
Sbjct: 46 EFITVQDPNGDEPIELPTVD-GVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 63 LYAPLDGWQDRVYYCTFD-------ASGNSSATQS-----------------------KR 92
L AP DGW+++ ++ A ++ AT + KR
Sbjct: 105 LIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKR 164
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
+ +S PV DL+VLG+ + TD ++YFE GT+ F +K K+ G SKGFGF+R
Sbjct: 165 AVERDSQPV---DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIK-RKSDGNSKGFGFVRM 220
Query: 153 SSHESALKAM-LKKHKIGNRICDVRIPEST-KIGTEEPVASKVFVGSLTPDLTESDLREH 210
SS K + + +H I R CDV++P+ K G P S++FVG LT + E LR+
Sbjct: 221 SSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQG--RPSISRIFVGRLTDKVDEHQLRKV 278
Query: 211 F----EYY---GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262
F + Y V DV IPKPFR FAFVT A+ ++ + + + V + A P
Sbjct: 279 FGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQP 338
Query: 263 KKKMNE 268
+++ N+
Sbjct: 339 REENNQ 344
>gi|76154551|gb|AAX26015.2| SJCHGC08328 protein [Schistosoma japonicum]
Length = 167
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 95/155 (61%)
Query: 109 LGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKI 168
L + + ++ LKEYF ++G L +K + ++ SKGFGFIR+S +S + + ++H I
Sbjct: 7 LNLAYKTDESTLKEYFSRYGDLVTVQIKRNPDSNASKGFGFIRYSDIQSQIMCLSERHNI 66
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE 228
R CDVRIP S G + V+ KVFVG +T +T LR+HF +G V+DV IPKPFR
Sbjct: 67 DGRWCDVRIPISKLEGDRQEVSRKVFVGGITEFITADLLRDHFSQFGRVIDVFIPKPFRS 126
Query: 229 FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
FAFV+FE VA L+G+ I+ + + A PK
Sbjct: 127 FAFVSFEDPQVATDLLGKDQVIEGVTLSIGSAVPK 161
>gi|241744067|ref|XP_002414227.1| tar DNA-binding protein, putative [Ixodes scapularis]
gi|215508081|gb|EEC17535.1| tar DNA-binding protein, putative [Ixodes scapularis]
Length = 204
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 134 NVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
VK D TG+SKGFGFIRFSS+ES ++A+ K+H I R CDV+IP S K G ++ KV
Sbjct: 23 QVKKDPKTGQSKGFGFIRFSSYESQVRALSKRHLIDGRWCDVKIPNS-KDGQASELSRKV 81
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246
FVG T DLT DLR++F +G V DV IPKPFR FAFVTF VA+SL G+
Sbjct: 82 FVGRCTEDLTSDDLRDYFSKFGEVTDVFIPKPFRAFAFVTFVDPDVAQSLCGE 134
>gi|449688875|ref|XP_002157235.2| PREDICTED: TAR DNA-binding protein 43-like, partial [Hydra
magnipapillata]
Length = 271
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+DL+VLG+P+ T+ DLK+YF +FG L +K+D T S+GF FIRF + +A K +
Sbjct: 29 SDLIVLGLPYKATNQDLKDYFLKFGELAMYEIKIDPLTKESRGFAFIRFKNEAAAQKVLK 88
Query: 164 KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H I R C+VR+P+ +E K+F+G L D +E DLR++F YG + DV +P
Sbjct: 89 VDHSILGRRCEVRLPKK-----KENKRVKLFIGRLPADTSEDDLRKYFSDYGELTDVYLP 143
Query: 224 KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
PFR F FVT+ A+ ++ + ++K ++ V A PK
Sbjct: 144 TPFRGFGFVTYAQADDAQIVLHKSHSLKGSRMNVTIAEPK 183
>gi|402591562|gb|EJW85491.1| hypothetical protein WUBG_03595 [Wuchereria bancrofti]
Length = 407
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 161/350 (46%), Gaps = 49/350 (14%)
Query: 10 YVTNNLEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVES----RYRAVKLADGH 62
Y++ EDG +EIP +DDG + ++TL +P AIGLK+K +S R AV
Sbjct: 38 YISVGSAEDGNNMLEIPVDDDGNLPIATLAHSFPEAIGLKFKNQSTGIYRTLAVDEQKRC 97
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQS----------KRSYPDNS------GPVQNTDL 106
+Y P GW R Y F +S KRS D S PV DL
Sbjct: 98 IYPPKGGWGTRRYVAIFACPAGDRKRRSNDDMGDLVGEKRSGWDGSLNESLRVPV---DL 154
Query: 107 VVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH 166
+VL + + + LK++FEQ+G +++ VK D T KG+GF++F+ ES K + K
Sbjct: 155 IVLNLSFKTDEEALKKFFEQYGEVQYVEVKRDFKTNMPKGYGFVKFADIESQDKVLRDKE 214
Query: 167 K-IGNRICDVRIPES-----------TKIGTEEPVASKVFVGSLTPDLTESDLREHFEY- 213
I R+ V++P + +E +++K++VG + LTE D+ + F+
Sbjct: 215 VFIDGRVTQVKLPNHFTNRISQQPSFEMLPAQETISTKLYVGRVWNTLTEKDIFDVFDAE 274
Query: 214 ------YGAVVDVLIPKPFREFAFVTFELDSVAKSLIG-QHVNIKDKKVVVMEATPK--- 263
V V IPKP R FAFVT +V K + IK K V V TPK
Sbjct: 275 AKKLSPLAKVERVFIPKPHRGFAFVTVNDPNVTKRFCQIRDFIIKGKSVCVSIPTPKNSA 334
Query: 264 KKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
K+M ++ N++ + + S+ P S+ + Y Y Q Q N +
Sbjct: 335 KQMQQQMQNQDVYPTQYPISQPPQSSMQSYSPSINYPSQFPQNQNWLNPR 384
>gi|119572463|gb|EAW52078.1| hCG1744641, isoform CRA_b [Homo sapiens]
Length = 384
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 98/193 (50%), Gaps = 27/193 (13%)
Query: 79 FDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
D SSA + KR+ S DLVVLG W T+ DLKEYF FG + VK D
Sbjct: 1 MDEIDASSAVKVKRAVQKTS------DLVVLGRTWKTTEQDLKEYFSTFGDVLMVQVKKD 54
Query: 139 KNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
TG SK FGF+ F+ E+ +K M + H I R CD ++P S +
Sbjct: 55 TKTGHSKRFGFVCFTEDETQVKVMSQLHMIDGRWCDCKLPNSKQ---------------- 98
Query: 199 TPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVM 258
+PD ++ YG VVDV+I KPFR FAFVTF D VA+S G+ + IK + +
Sbjct: 99 SPDKPLRSMK-----YGEVVDVVILKPFRTFAFVTFADDQVAQSFCGEDLIIKGISIHIS 153
Query: 259 EATPKKKMNERQD 271
A PK N +++
Sbjct: 154 NAEPKHNSNRQKE 166
>gi|170590532|ref|XP_001900026.1| TAR-binding protein [Brugia malayi]
gi|158592658|gb|EDP31256.1| TAR-binding protein, putative [Brugia malayi]
Length = 403
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 142/297 (47%), Gaps = 46/297 (15%)
Query: 10 YVTNNLEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVES----RYRAVKLADGH 62
Y++ EDG +EIP +DDG + ++TL +P AIGLK+K ++ R AV
Sbjct: 38 YISVGSAEDGNNMLEIPVDDDGNLPIATLAHSFPEAIGLKFKNQTTGIYRTLAVDEQKRC 97
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQS----------KRSYPDNS------GPVQNTDL 106
+Y P GW R Y F + +S KRS D S PV DL
Sbjct: 98 IYPPKGGWGTRRYVAIFASPAGDRKRRSNDDMGDLVGEKRSGWDGSLNESLRVPV---DL 154
Query: 107 VVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH 166
+VL + + + LK++FEQ+G +++ VK D T KG+GF++F+ ES K + K
Sbjct: 155 IVLNLSFKTDEEALKKFFEQYGEVQYVEVKRDFKTNMPKGYGFVKFADIESQDKVLRDKE 214
Query: 167 K-IGNRICDVRIPE--STKIG---------TEEPVASKVFVGSLTPDLTESDLREHFEY- 213
I R+ V++P + +I +E +++K++VG + LTE D+ + F+
Sbjct: 215 VFIDGRVTQVKLPNHFTNRISQQPSFEMPPAQETISTKLYVGRVWNTLTEKDIFDVFDAE 274
Query: 214 ------YGAVVDVLIPKPFREFAFVTFELDSVAKSLIG-QHVNIKDKKVVVMEATPK 263
V V IPKP R FAFVT +V K + IK K V V TPK
Sbjct: 275 AKRLSPLAKVERVFIPKPHRGFAFVTVNDPNVTKRFCQIRDFIIKGKSVCVSIPTPK 331
>gi|18419943|ref|NP_568011.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|238481137|ref|NP_001154290.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15081787|gb|AAK82548.1| AT4g36960/C7A10_400 [Arabidopsis thaliana]
gi|23308345|gb|AAN18142.1| At4g36960/C7A10_400 [Arabidopsis thaliana]
gi|332661324|gb|AEE86724.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332661325|gb|AEE86725.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 379
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW + LK+Y +FG LE V D++TGRS+GFG++ F+S E A A+ +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +GNRI +V++ + K +P +++FV + ++ESD R HFE YG + D+ +P
Sbjct: 65 HFLGNRILEVKV-ATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 224 KPF-----REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K + R F+TF + L+ ++ V V ATPK+
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKE 169
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 180 STKIGTEEP----VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFA 230
+T G EP + +K+FVG L + + DLR++F +G + D IPK R F
Sbjct: 225 ATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFG 284
Query: 231 FVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
FVTF + VA + + I ++V + ATP
Sbjct: 285 FVTFAENGVADRVARRSHEICGQEVAIDSATP 316
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + +++D + +FE++G + + D N+ + +G GFI FSS +S M
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 164 KKHKIGNRICDV 175
H +G V
Sbjct: 151 DTHDLGGTTVAV 162
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V +P + +DL++YF +FG ++ A + D +GFGF+ F+ + A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
H+I + +V I +T + P A + S E+F YG
Sbjct: 302 HEICGQ--EVAIDSATPLDEAGPSAGAS-------SMLSSSRPEYFGGYGG 343
>gi|312067664|ref|XP_003136849.1| RNA binding protein [Loa loa]
Length = 392
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 114/240 (47%), Gaps = 39/240 (16%)
Query: 62 HLYAPLDGWQDRVYYCTF-------------------DASGNSSATQSKRS--------- 93
AP DGW+++ + + + G+S +Q R
Sbjct: 7 RFLAPPDGWKNKTFIVIYPHRGSGDQNTKRKKMMDECEQEGDSEDSQGGRGGQFTAKQKR 66
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
D SG DL+VLG+P+ + K YFE FG + ++K D N G SKGFGF+R +
Sbjct: 67 IEDPSGEKACIDLIVLGLPFKTSAETCKAYFENFGEVVLFDLKTDPN-GASKGFGFVRMA 125
Query: 154 SHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
++ + + ++ H+I R C VRIP S K T PV +++FVG + T LR+ F
Sbjct: 126 DFDAQQRILTQQTHEIDGRRCQVRIPLS-KGDTGSPVVTRIFVGRVQEKTTVDTLRKFFN 184
Query: 213 YYGA-------VVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKD-KKVVVMEATPKK 264
A V DV IP+PFR FAFV F +VAK L+ Q I D V V A P++
Sbjct: 185 GEAAKIDPNAFVTDVFIPRPFRSFAFVNFSSPAVAKELMRQGDFIIDGSSVAVSAAAPRE 244
>gi|255565200|ref|XP_002523592.1| RNA-binding protein, putative [Ricinus communis]
gi|223537154|gb|EEF38787.1| RNA-binding protein, putative [Ricinus communis]
Length = 359
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ F+S E A A+ +
Sbjct: 5 LVVLGIPWEVDTEGLREYMTKFGELDDCIVMKERSSGRSRGFGYVTFASAEDAKSALSSE 64
Query: 166 HKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +GNR+ +V++ P+ ++ +++FV + P +TE+ R HFE YG ++D+ +P
Sbjct: 65 HFLGNRMLEVKVATPKQEEMRAPAKKVTRIFVARIPPSVTETTFRSHFEKYGEIIDLYMP 124
Query: 224 -----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K R F+TF SL+ + VVV ATPK+
Sbjct: 125 KDHSSKAHRGIGFITFASADSVDSLMADTHELGGSTVVVDRATPKE 170
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 104/274 (37%), Gaps = 70/274 (25%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + T+ + +FE++G + + D ++ +G GFI F+S +S M
Sbjct: 92 TRIFVARIPPSVTETTFRSHFEKYGEIIDLYMPKDHSSKAHRGIGFITFASADSVDSLMA 151
Query: 164 KKHKIGNR--ICDVRIPESTKI-------------------------------------- 183
H++G + D P+
Sbjct: 152 DTHELGGSTVVVDRATPKEDDFRPVGRMAHGGYGAYNAYISAATRYAALGAPTLYDHPGP 211
Query: 184 --GTEEP---VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVT 233
GT EP V K+FVG L + T DLR++F +G ++DV +PK R F FVT
Sbjct: 212 MYGTGEPARGVGKKIFVGRLPQEATPEDLRQYFGRFGHILDVYVPKDPKRTGHRGFGFVT 271
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQY 293
F + VA + + I +V + ATP D M+ + +
Sbjct: 272 FAEEGVADRVSRRSHEICGHQVAIDSATP-------------IDDAGPSGNFMMNAAPSF 318
Query: 294 GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
GG G N + G DYDDW +G G
Sbjct: 319 GGYGGPLRNFGRMYGSL-------DYDDWGYGMG 345
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 96 DNSGPVQNTD---------LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
D+ GP+ T + V +P T DL++YF +FG + V D +G
Sbjct: 207 DHPGPMYGTGEPARGVGKKIFVGRLPQEATPEDLRQYFGRFGHILDVYVPKDPKRTGHRG 266
Query: 147 FGFIRFSSHESALKAMLKKHKI 168
FGF+ F+ A + + H+I
Sbjct: 267 FGFVTFAEEGVADRVSRRSHEI 288
>gi|297798166|ref|XP_002866967.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312803|gb|EFH43226.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 380
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW + LK+Y +FG LE V D++TGRS+GFG++ F+S E A A+ +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASSEDAKNALKGE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +GNRI +V++ + K +P +++FV + ++ESD R HFE YG + D+ +P
Sbjct: 65 HFLGNRILEVKV-ATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 224 -----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K R F+TF + L+ ++ V V ATPK+
Sbjct: 124 KDHNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKE 169
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSV 239
T + +K+FVG L + + DLRE+F +G + D IPK R F FVTF + V
Sbjct: 235 TTRGIGNKIFVGRLPQEASVDDLREYFGRFGRIQDAYIPKDPKRSGHRGFGFVTFAENGV 294
Query: 240 AKSLIGQHVNIKDKKVVVMEATP 262
A + + I ++V + ATP
Sbjct: 295 ADCVARRSHEICGQEVAIDSATP 317
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + +++D + +FE++G + + D N+ + +G GFI FSS +S M
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDHNSKQHRGIGFITFSSADSVEDLME 150
Query: 164 KKHKIGNRICDV 175
H +G V
Sbjct: 151 DTHDLGGTTVAV 162
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V +P + +DL+EYF +FG ++ A + D +GFGF+ F+ + A +
Sbjct: 243 IFVGRLPQEASVDDLREYFGRFGRIQDAYIPKDPKRSGHRGFGFVTFAENGVADCVARRS 302
Query: 166 HKI 168
H+I
Sbjct: 303 HEI 305
>gi|312077588|ref|XP_003141370.1| RNA recognition domain-containing protein domain-containing protein
[Loa loa]
gi|307763465|gb|EFO22699.1| RNA recognition domain-containing protein domain-containing protein
[Loa loa]
Length = 406
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 162/347 (46%), Gaps = 53/347 (15%)
Query: 8 YIYVTNNLEEDG--MEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH- 62
++ V +ED +E+P DGT+ STL +P A+GLKYK +R++ + +G
Sbjct: 46 HVCVCATEDEDCTPLELPLASDGTLPCSTLSHSFPKAVGLKYKNPATGLFRSLPVDEGKK 105
Query: 63 -LYAPLDGWQDRVYYCTFDASGNSS------ATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
+ AP GW Y D S +SS Q+ R + PV DL V + +
Sbjct: 106 CVLAPKGGWHGHRYVAIIDDSLSSSDRLEGQCGQTDRL----NMPV---DLFVRNLSFKT 158
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICD 174
T+ LK++FEQ+G +++A VK D TG +G+GFI+ + E K + + I R+
Sbjct: 159 TEEQLKKFFEQYGEVQYAEVKKDYRTGLPRGYGFIKMKTLEDQEKVLKEGDFYIDGRMAQ 218
Query: 175 VRIPESTKIGTEEP--VASKVFVGSLTPDLTESDLREHFEY-------YGAVVDVLIPKP 225
V+ P+ + G ++ + +K++VG + ++TE+DL + F+ V V +PKP
Sbjct: 219 VKYPDHGQDGGDQDDRITTKIYVGRVYAEITETDLHKLFDEEAKKISPLAKVERVFLPKP 278
Query: 226 FREFAFVTFELDSVAKSLIGQHVNIKD-----KKVVVMEATPKKKMNERQDNRNNFDRRN 280
R FA+V+ V K L I+D K + V PKK+ +E D R
Sbjct: 279 CRGFAYVSLNDPKVVKRL----CQIRDFVCAGKSIYVSIPRPKKQESEPVRYSGMRDYR- 333
Query: 281 DRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNNK-----RRRNDYDDW 322
S Y G +D+ + GY N R R+ +DD+
Sbjct: 334 ---------SHPYRSSYGRWDDEPISRKGYYNDDPYAGRTRSLFDDF 371
>gi|312068876|ref|XP_003137419.1| TAR-binding protein [Loa loa]
gi|307767419|gb|EFO26653.1| TAR-binding protein [Loa loa]
Length = 405
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 140/311 (45%), Gaps = 46/311 (14%)
Query: 10 YVTNNLEEDG---MEIPSEDDGTILLSTLQAQYPSAIGLKYKVES----RYRAVKLADGH 62
YV+ EDG +EIP +DDG + ++TL +P AIGLK+K +S R AV
Sbjct: 37 YVSVGSGEDGSNILEIPVDDDGNLPIATLSHSFPEAIGLKFKNQSTGVYRTLAVDEQKRC 96
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQS----------KRSYPDNS------GPVQNTDL 106
+Y P GW R Y F S KRS D S PV DL
Sbjct: 97 IYPPKGGWGTRRYVAIFATPPGDRKRPSNDVMGDLVGEKRSGLDGSLNESLRVPV---DL 153
Query: 107 VVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH 166
+VL + + + LK++FEQ+G +++ VK D T KG+GF++F+ ES K + K
Sbjct: 154 IVLNLSFKTDEEALKKFFEQYGEVQYVEVKRDFKTNMPKGYGFVKFADIESQDKVLRDKE 213
Query: 167 K-IGNRICDVRIPES-----------TKIGTEEPVASKVFVGSLTPDLTESDL------- 207
I R+ V++P +E +++K++VG + LTE D+
Sbjct: 214 VFIDGRVTQVKLPNHFTNRVSQQPSFEMFPVQETISTKLYVGRVWNTLTEKDIFDVLDAE 273
Query: 208 REHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG-QHVNIKDKKVVVMEATPKKKM 266
+ + V IPKP R FAFVT +V + + I+ K V V TPK
Sbjct: 274 AKKLSPLAKIERVFIPKPHRGFAFVTVNDPNVTRRFCQIRDFIIRGKSVCVSIPTPKNSG 333
Query: 267 NERQDNRNNFD 277
+ Q + + D
Sbjct: 334 KQMQQHMQSQD 344
>gi|302755192|ref|XP_002961020.1| hypothetical protein SELMODRAFT_164019 [Selaginella moellendorffii]
gi|302767142|ref|XP_002966991.1| hypothetical protein SELMODRAFT_144531 [Selaginella moellendorffii]
gi|300164982|gb|EFJ31590.1| hypothetical protein SELMODRAFT_144531 [Selaginella moellendorffii]
gi|300171959|gb|EFJ38559.1| hypothetical protein SELMODRAFT_164019 [Selaginella moellendorffii]
Length = 395
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+ N LVVLGIPW L+ Y +FG L+ V D++TGRS+GFG++ F+S E A K
Sbjct: 9 LGNRKLVVLGIPWDVDTEGLRSYMTKFGGLDDVIVMKDRSTGRSRGFGYVTFTSSEDAEK 68
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
A+L +H + RI +V++ + K +P ++VFV + P + + R +FE YG + D
Sbjct: 69 ALLAQHSLSGRILEVKV-ATPKEEMLKPKVTRVFVARIPPSVNDDTFRNYFEKYGRITDA 127
Query: 221 LIP-----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+P K R FVT+E + L+G+ + + V ATPK
Sbjct: 128 YMPKDQGSKAHRGIGFVTYEDPDSVEKLMGKTHELAGSTIAVDRATPK 175
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 147 FGFIRFSSHE--SALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
FG F +++ AL + IG V P + + K+FVG L D T
Sbjct: 205 FGSSAFGAYDYPPALATEIAGSGIGGAYGPVSAPMNISSSQNRGIGKKIFVGRLPLDATA 264
Query: 205 SDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVME 259
DLR +F +G ++DV +PK R F FVTF +SVA + + + ++ V
Sbjct: 265 EDLRRYFGNFGRLLDVYVPKDAKKLSHRGFGFVTFADESVADRVALRSHELLGVQIAVDR 324
Query: 260 ATPK 263
ATP+
Sbjct: 325 ATPQ 328
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 111 IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKI 168
+P T DL+ YF FG L V D +GFGF+ F+ A + L+ H++
Sbjct: 258 LPLDATAEDLRRYFGNFGRLLDVYVPKDAKKLSHRGFGFVTFADESVADRVALRSHEL 315
>gi|430813105|emb|CCJ29521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 397
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 22/200 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L+ YFEQFG + NV D +TGRS+GFGF+ F + M+K+
Sbjct: 1 MFIGGLNWETTDESLRAYFEQFGEVTECNVMRDSSTGRSRGFGFLTFKDPKCVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ +K+FVG ++ D TE + RE F +G V+D +
Sbjct: 61 HYLDGKIID---PKRAIPREEQEKTAKMFVGGVSQDCTEDEFREFFSAFGRVIDATLMID 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQDN------ 272
+P R F FVTFE D+ ++ + Q ++ I DK++ V ATPK + ER +
Sbjct: 118 KDTGRP-RGFGFVTFESDAAVENAMSQPYLAIHDKQIEVKRATPKGNIKERVNTKEKDMS 176
Query: 273 -----RNNFDRRNDRSRSPM 287
RN + + ND PM
Sbjct: 177 GCNYQRNFYGKNNDGFSFPM 196
>gi|302838536|ref|XP_002950826.1| hypothetical protein VOLCADRAFT_43575 [Volvox carteri f.
nagariensis]
gi|300263943|gb|EFJ48141.1| hypothetical protein VOLCADRAFT_43575 [Volvox carteri f.
nagariensis]
Length = 303
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 11/179 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L VLG+PW T++ LK YF Q+GTLE A V D+ TG+S+GFGF+ F SA +A+ +
Sbjct: 2 LAVLGLPWETTEDTLKAYFSQYGTLECAEVMKDRYTGKSRGFGFVTFIDPASATRALSVE 61
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK- 224
H I R C+ ++ K P +++FV + P +TES +++FE +G + D +PK
Sbjct: 62 HTIDGRRCEAKV-ALPKGEPSPPRTTRIFVARIPPSVTESQFKQYFEGFGKLQDAYMPKD 120
Query: 225 ----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
+R FVTF DSV K + +H + ++ + ATPK+ E +N F R
Sbjct: 121 HSKQGYRGIGFVTFASPDSVEKVMAVKHW-MNGHEIAIDRATPKE---EPAALKNIFAR 175
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 62/221 (28%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + T + V IP + T++ K+YFE FG L+ A + D + +G GF+ F+S +S
Sbjct: 82 PPRTTRIFVARIPPSVTESQFKQYFEGFGKLQDAYMPKDHSKQGYRGIGFVTFASPDSVE 141
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASK--------------------------- 192
K M KH + ++ I +T EEP A K
Sbjct: 142 KVMAVKHWMNGH--EIAIDRATP--KEEPAALKNIFARLPMGPGQRRSFDNEAGGGLARF 197
Query: 193 ----------------------VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----- 225
+F+G LT D E+D++E+F +G V+DV +PK
Sbjct: 198 GGGSWDVLGAEYGHGAGGAGPRIFIGKLTKDTGEADVKEYFMRFGYVMDVYLPKAKDNKA 257
Query: 226 -FREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPK 263
R F FVTFE D+ + ++ GQH +K + + A PK
Sbjct: 258 EHRGFGFVTFETDAAIQRVVSHGQH-RLKGSTIAIDIAMPK 297
>gi|159479752|ref|XP_001697954.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158274052|gb|EDO99837.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 316
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 13/185 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L VLG+PW T+ LK YF QFG LE A V D+ TG+S+GFGF+ F+ SA +A+ +
Sbjct: 3 LAVLGLPWETTEETLKVYFSQFGALEGAEVMKDRYTGKSRGFGFVTFTDAGSATRALGVE 62
Query: 166 HKIGNRICDVRI--PE-STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H I R C+ +I P+ S + P +++FV + P +TE+ R++FE +G + D +
Sbjct: 63 HTIDGRRCEAKIALPKVSRRQVPSPPRTTRIFVARIPPSVTEAQFRQYFEGFGKLQDAYM 122
Query: 223 PK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
PK +R FVTF DSV K + +H + ++ + ATPK+ E +N F
Sbjct: 123 PKDHSKQGYRGIGFVTFASPDSVEKVMAVKHW-MNGHEIAIDRATPKE---EPTALKNIF 178
Query: 277 DRRND 281
R D
Sbjct: 179 ARLPD 183
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 67/237 (28%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S+R P P + T + V IP + T+ ++YFE FG L+ A + D + +G GF
Sbjct: 80 SRRQVPS---PPRTTRIFVARIPPSVTEAQFRQYFEGFGKLQDAYMPKDHSKQGYRGIGF 136
Query: 150 IRFSSHESALKAMLKKHKI-GNRICD----------------VRIPESTKIGTEEPV--- 189
+ F+S +S K M KH + G+ I R+P+ +G V
Sbjct: 137 VTFASPDSVEKVMAVKHWMNGHEIAIDRATPKEEPTALKNIFARLPDLNTLGAAAAVQQM 196
Query: 190 -----------------------------------ASKVFVGSLTPDLTESDLREHFEYY 214
++F+G LT D +E+D++++F +
Sbjct: 197 MQAAASASAASAAGRRSLDSTLKRLENPAIANARAGPRIFIGKLTKDTSEADVKDYFMRF 256
Query: 215 GAVVDVLIPKP------FREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPK 263
G V+DV +PK R F FVTFE D+ + ++ GQH +K + + A PK
Sbjct: 257 GYVMDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQH-RLKGSTIAIDIAMPK 312
>gi|170579613|ref|XP_001894907.1| RNA binding protein [Brugia malayi]
gi|158598322|gb|EDP36236.1| RNA binding protein, putative [Brugia malayi]
Length = 389
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 11/186 (5%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T ++ D SG DL+VLG+P+ + K YFE FG + ++K D +G SKGF
Sbjct: 58 TAKQKRIEDPSGEKACIDLIVLGLPFKTSAETCKAYFENFGEVVLFDLKTDP-SGASKGF 116
Query: 148 GFIRFSSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESD 206
GF+R + ++ + + ++ H+I R C VRIP S K T P+ +++FVG + T
Sbjct: 117 GFVRMADFDAQQRILTQQTHEIDGRRCQVRIPLS-KGDTGSPIVTRIFVGRVQEKTTVDT 175
Query: 207 LREHFEYYGA-------VVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKD-KKVVVM 258
LR+ F V DV IP+PFR FAFV F +VAK L+ Q I D V V
Sbjct: 176 LRKFFNGEATKIDPNAFVTDVFIPRPFRSFAFVNFSSPAVAKELMRQGDFIIDGSSVAVS 235
Query: 259 EATPKK 264
A P++
Sbjct: 236 AAAPRE 241
>gi|358349448|ref|XP_003638749.1| RNA-binding protein [Medicago truncatula]
gi|355504684|gb|AES85887.1| RNA-binding protein [Medicago truncatula]
Length = 371
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++ LVVLGIPW + LKEY +FG LE V +++TGRS+GFG++ F+S + A
Sbjct: 1 MEQRKLVVLGIPWHVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKN 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ +H +G+R +V++ + K PV +++FV + P +TE R HFE YG +
Sbjct: 61 VLSSEHSLGDRTLEVKV-ATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGDIT 119
Query: 219 DVLIP-----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
D+ +P K R F+TF ++L+ + + VVV ATPK+
Sbjct: 120 DLYMPKDRGSKTHRGIGFITFATADSVENLMKETHELGGSDVVVDRATPKE 170
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 70/282 (24%)
Query: 100 PVQN-TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
PV+ T + V I + T+ + +FE++G + + D+ + +G GFI F++ +S
Sbjct: 87 PVKKVTRIFVARIAPSVTEETFRSHFEKYGDITDLYMPKDRGSKTHRGIGFITFATADSV 146
Query: 159 LKAMLKKHKIGNR----------------ICDVR------------IPESTKI------- 183
M + H++G I R IP ST+
Sbjct: 147 ENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTPQLGYSAYSTYIPASTRYAALGAPT 206
Query: 184 ---------GTEEP---VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF----- 226
G EP ++ K+FVG L P+ T DLR +F +G ++DV IP+
Sbjct: 207 MYDRPSSIYGRGEPARGISKKIFVGRLPPEATTEDLRLYFGRFGHILDVYIPRDVKRPGH 266
Query: 227 REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSP 286
R F FVTF VA + + I ++V + A P ++E + N +
Sbjct: 267 RGFGFVTFADSGVADRVSRRPHEICGQEVAIDSAAP---LDEAGPSGNTM-------LNS 316
Query: 287 MSNSRQYGGG-NGYYDNRQQQQGG--YNNKRRRNDYDDWHHG 325
M + R YGG Y+D + G YN+ D+DD +G
Sbjct: 317 MDSFRGYGGPVRPYFDESPVRSYGRMYNSL----DFDDLGYG 354
>gi|170579729|ref|XP_001894958.1| RNA recognition motif domain containing protein [Brugia malayi]
gi|158598268|gb|EDP36196.1| RNA recognition motif domain containing protein [Brugia malayi]
Length = 408
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 38/288 (13%)
Query: 8 YIYVTNNLEEDG--MEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH- 62
++ V +ED +E+P DGT+ TL +P A+GLKYK +R++ + +G
Sbjct: 47 HVCVCATEDEDCTPLELPLASDGTLPCFTLSHSFPKAVGLKYKNPATGLFRSLPVDEGKK 106
Query: 63 -LYAPLDGWQDRVYYCTFDASGNSS------ATQSKRSYPDNSGPVQNTDLVVLGIPWTF 115
+ AP GW Y D S +SS Q+ R + PV DL V + +
Sbjct: 107 CVLAPKGGWHGHRYVAIIDDSLSSSDRLEGQCGQTDRL----NMPV---DLFVRNLSFKT 159
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICD 174
T+ LK++FEQ+G +++A VK D TG +G+GFI+ + E K + + I R+
Sbjct: 160 TEEQLKKFFEQYGEVQYAEVKKDYRTGLPRGYGFIKMKTLEDQEKVLKEGDFYIDGRMAQ 219
Query: 175 VRIPESTKIGTEEP--VASKVFVGSLTPDLTESDLREHFEY-------YGAVVDVLIPKP 225
V+ P+ + G ++ + +K++VG + ++TE+DL + F+ V V +PKP
Sbjct: 220 VKYPDHGQDGGDQDDRITTKIYVGRVYAEITETDLHKLFDEEAKKISPLAKVERVFLPKP 279
Query: 226 FREFAFVTFELDSVAKSLIGQHVNIKD-----KKVVVMEATPKKKMNE 268
R FA+V+ V K L I+D K + V PKK+ +E
Sbjct: 280 CRGFAYVSLNDPKVVKRL----CQIRDFVCAGKSIYVSIPRPKKQESE 323
>gi|156554677|ref|XP_001600539.1| PREDICTED: RNA-binding protein squid-like [Nasonia vitripennis]
Length = 338
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F FG +E NVK D
Sbjct: 32 DATENGQESQEDRSAQGNQDSLNDRKLFVGGLSWETTDKELRDHFSTFGDIESINVKTDP 91
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
TGRS+GF FI F+ ES KAM H I N+ D P+ K K+FVG L
Sbjct: 92 TTGRSRGFAFIVFAKAESLDKAMAHGDHIINNKKVD---PKKAK-----ARHGKIFVGGL 143
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI-GQHVNIKD 252
+ +L++ D++ F +G +VDV +P + F F+TFE + VA L+ I
Sbjct: 144 STELSDDDIKTFFSQFGTIVDVEMPFDKTKNQRKGFCFITFESEQVANELLKTSKQTISG 203
Query: 253 KKVVVMEATPK 263
K+V V +ATP+
Sbjct: 204 KEVEVKKATPR 214
>gi|392863540|gb|EJB10655.1| musashi 1, variant [Coccidioides immitis RS]
Length = 608
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 14/197 (7%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
SS+ ++ P +G ++ + + G+ W TD LK+YF QFG ++ V D TGRS
Sbjct: 93 SSSISPQQPEPQGTGIKEDGKMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRS 152
Query: 145 KGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDL 202
+GFGF+ F ++ M+K+H + +I D + IP E+ SK+FVG ++ D
Sbjct: 153 RGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQDA 207
Query: 203 TESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
E D ++ F +G VVD + +P R F FVTF+ ++ ++ + Q + I K +
Sbjct: 208 NEQDFKKFFMQFGRVVDATLMIDKDTGRP-RGFGFVTFDSEAAVEACLSQPLEILGKPIE 266
Query: 257 VMEATPKKKMNERQDNR 273
V +A P+ + + D R
Sbjct: 267 VKKAQPRGNLRDEDDRR 283
>gi|307193268|gb|EFN76159.1| RNA-binding protein squid [Harpegnathos saltator]
Length = 334
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+E+F +G +E NVK D
Sbjct: 50 DAADNGQESQEDRSASGNQDSLNDRKLFVGGLSWETTDKELREHFSSYGDIESINVKTDP 109
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K K+FVG L
Sbjct: 110 NTGRSRGFAFIVFAKAESLDKIMAAGDHVINNKKVD---PKKAK-----ARHGKIFVGGL 161
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI-GQHVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 162 STELSDDDIKNFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTING 221
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 222 KEVDVKKATPK 232
>gi|90077040|dbj|BAE88200.1| unnamed protein product [Macaca fascicularis]
Length = 139
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 83/135 (61%), Gaps = 18/135 (13%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFG 128
T+ DLKEYF G
Sbjct: 114 KTTEQDLKEYFSTLG 128
>gi|258574483|ref|XP_002541423.1| hypothetical protein UREG_00938 [Uncinocarpus reesii 1704]
gi|237901689|gb|EEP76090.1| hypothetical protein UREG_00938 [Uncinocarpus reesii 1704]
Length = 341
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDAKTVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ D TE D ++ F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQDATEQDFKKFFMQFGRVVDATLMID 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
+P R F FVTF+ ++ ++ + Q + I K + V +A P+ M E +D R
Sbjct: 118 KDTGRP-RGFGFVTFDSEAAVEACLSQPLEILGKPIEVKKAQPRGNMREEEDRR 170
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + + V G+ T+ D K++F QFG + A + +DK+TGR +GFGF+
Sbjct: 71 KRAIPRDEQE-RTSKIFVGGVSQDATEQDFKKFFMQFGRVVDATLMIDKDTGRPRGFGFV 129
Query: 151 RFSSHESALKAMLKK 165
F S E+A++A L +
Sbjct: 130 TFDS-EAAVEACLSQ 143
>gi|449460598|ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
gi|449502733|ref|XP_004161727.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
Length = 377
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L+EY +FG LE V +++TGRS+GFG++ F++ E A A+ +
Sbjct: 5 LVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSSE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV-ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H +GNR+ +V++ + P +++FV ++ +TE+ R HFE YG + D+ +P
Sbjct: 65 HFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYMPK 124
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
K R F+TF ++L+ + VVV ATPK
Sbjct: 125 DQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPK 168
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 107/293 (36%), Gaps = 77/293 (26%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + T + V I T T+ + +FE++G + + D+ + +G GFI F+S +S
Sbjct: 87 PKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVE 146
Query: 160 KAMLKKHKIG--NRICDVRIPE-------------------------------------- 179
M H++G N + D P+
Sbjct: 147 NLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISAATRYAALG 206
Query: 180 --------STKIGTEEPVASKVFVG--------SLTPDLTESDLREHFEYYGAVVDVLIP 223
+ G+ P F G L + + DLR++F +G ++DV +P
Sbjct: 207 APTLYDHPGSVYGSMSPTVPLEFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVP 266
Query: 224 K-----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
K R F FVTF D VA + + I ++V + ATP D+
Sbjct: 267 KDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATP-------LDDAGAGAG 319
Query: 279 RNDRSRSPMSNSR--QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
+ S + M NS +GG G + G D+DDW +G GG
Sbjct: 320 ASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSL-------DFDDWGYGIGGG 365
>gi|224084344|ref|XP_002307266.1| predicted protein [Populus trichocarpa]
gi|222856715|gb|EEE94262.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LV+LGIPW L++Y +FG LE V ++++GRS+GFG++ F S E A + +
Sbjct: 5 LVILGIPWEIDTEGLRQYMSKFGELEDCIVMKERSSGRSRGFGYVTFVSAEDAKAVLSGE 64
Query: 166 HKIGNRICDVRIP---ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H +G R+ ++++ E + T++ A+++FV + P +TE+ R HFE YG ++D+ +
Sbjct: 65 HFLGKRMLEIKVATPKEEMRAPTKK--ATRIFVARIPPSVTETTFRSHFEKYGEIIDLYM 122
Query: 223 P-----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
P K R F+T+ SL+ + + VVV ATPK+
Sbjct: 123 PKDHSSKAHRGIGFITYASADSVDSLMAETHELGGSTVVVDRATPKE 169
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 50/211 (23%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ T + V IP + T+ + +FE++G + + D ++ +G GFI ++S +S
Sbjct: 89 KATRIFVARIPPSVTETTFRSHFEKYGEIIDLYMPKDHSSKAHRGIGFITYASADSVDSL 148
Query: 162 MLKKHKIGNRIC----------DVRIPESTKIG--------------------------- 184
M + H++G D R T G
Sbjct: 149 MAETHELGGSTVVVDRATPKEDDFRPIARTAPGGYGAYNAYISAATRYAALGAPTLYDHP 208
Query: 185 --------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAF 231
+ + K+FVG L + + DLR++F +G ++DV +PK R F F
Sbjct: 209 GPFYGRGESSRGMGKKIFVGRLPQEASTEDLRQYFGRFGHIIDVYVPKDPKRTGHRGFGF 268
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
VTF D VA + + I +V + ATP
Sbjct: 269 VTFAEDGVADRVSRRSHEICGHQVAIDSATP 299
>gi|356541820|ref|XP_003539370.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 365
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++ LVVLGIPW L+EY +FG LE V +++TGRS+GFG++ F+S + A +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ +H IGNR +V++ + K PV +++FV + +TE+ R HFE YG +
Sbjct: 61 VLSSEHIIGNRTLEVKV-ATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEIT 119
Query: 219 DVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
D+ +PK R F+TF ++L+ + + VVV ATPK
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPK 169
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 27/151 (17%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSL 243
+ K+FVG L P+ T DLR++F +G ++DV +P+ R F FVTF D A +
Sbjct: 229 TSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGAADRV 288
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ-YGGGNGYYDN 302
+ I V + ATP NF M NS + +GG G +
Sbjct: 289 SRRSHEICGHPVAIDSATPVDDAGP----SGNF----------MMNSMESFGGYGGPVRS 334
Query: 303 RQQQQGGYNNKRRRNDYDDWHHGNGGNSNNA 333
+ G D+DDW +G G S A
Sbjct: 335 YGRMYGSL-------DFDDWGYGIGRPSRAA 358
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 96 DNSGPV--------QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
D+ GP+ + + V +P T +DL++YF +FG + V D +GF
Sbjct: 215 DHPGPIYGRGDARRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKRAGHRGF 274
Query: 148 GFIRFSSHESALKAMLKKHKI 168
GF+ F+ +A + + H+I
Sbjct: 275 GFVTFAEDGAADRVSRRSHEI 295
>gi|224094314|ref|XP_002310138.1| predicted protein [Populus trichocarpa]
gi|222853041|gb|EEE90588.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L+EY +FG LE V ++++GRS+GFG++ F S E A + +
Sbjct: 5 LVVLGIPWEIDTEGLREYMTKFGGLEDCIVMKERSSGRSRGFGYVTFVSAEDAKAVLSSE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +G R+ +V++ + K P A+++FV + P +TE+ R HFE YG ++D+ +P
Sbjct: 65 HFLGKRMLEVKV-ATPKEEMRAPSKKATRIFVARIPPSVTETTFRSHFEKYGEIIDLYMP 123
Query: 224 -----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K R F+T+ +L+ + + VVV ATPK+
Sbjct: 124 KDHSSKAHRGIGFITYASADSVDNLMAETHELGGSTVVVDRATPKE 169
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ T + V IP + T+ + +FE++G + + D ++ +G GFI ++S +S
Sbjct: 89 KATRIFVARIPPSVTETTFRSHFEKYGEIIDLYMPKDHSSKAHRGIGFITYASADSVDNL 148
Query: 162 MLKKHKIGNR--ICDVRIPESTKI---GTEEP---------------------------- 188
M + H++G + D P+ G P
Sbjct: 149 MAETHELGGSTVVVDRATPKEDDFRPNGRMAPGGYGAYNAYISAATRYAALGAPTLYDHP 208
Query: 189 ------------VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAF 231
+ K+FVG L + + DLR++F +G ++DV +PK R F F
Sbjct: 209 GPFYGRGESSRGMGKKIFVGRLPQEASAEDLRQYFGRFGHILDVYVPKDPKRTGHRGFGF 268
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
VTF D VA + + I +V + ATP
Sbjct: 269 VTFAEDGVADRVSRRSHEICGHQVAIDSATP 299
>gi|296416057|ref|XP_002837697.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633580|emb|CAZ81888.1| unnamed protein product [Tuber melanosporum]
Length = 691
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF Q+G + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 170 MFIGGLNWETTDESLKEYFSQYGEVVECTVMRDGPTGRSRGFGFLTFKDPKTVNIVMVKE 229
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE+D RE+F +G V+D +
Sbjct: 230 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQEATETDFREYFTQFGRVLDATLMMD 286
Query: 223 ---PKPFREFAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
+P R F FVTF+ + +V +L + I DK + V +A P+ + ER + +FD
Sbjct: 287 KDTGRP-RGFGFVTFDSEGAVENALNCPTLAILDKPIEVKKAQPRGNIRERMN--AHFDE 343
Query: 279 RNDRSRS 285
R+DR S
Sbjct: 344 RDDRGGS 350
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D +EYF QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 250 KTSKIFVGGVSQEATETDFREYFTQFGRVLDATLMMDKDTGRPRGFGFVTFDSEGAVENA 309
Query: 162 M 162
+
Sbjct: 310 L 310
>gi|357482897|ref|XP_003611735.1| RNA-binding protein [Medicago truncatula]
gi|355513070|gb|AES94693.1| RNA-binding protein [Medicago truncatula]
Length = 403
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++ LVVLGIPW LKEY ++G LE V +++TGRS+GFG++ F+S + A +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ +H +G+R+ +V++ + K P +++FV + P +TE R HFE YG +
Sbjct: 61 VLSGEHVLGDRMLEVKV-ATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 DVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
D+ +PK R F+TF ++L+ + + VVV ATPK R+D+
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKA----REDDV 175
Query: 274 NNFDRRNDRSRSPMSNSRQYGGGNGY 299
R MS YG N Y
Sbjct: 176 KPTGR--------MSQGGGYGAYNAY 193
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 78/280 (27%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + T+ + +FE++G + + D+ + +G GFI F + ES M
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 164 KKHKIGNR--ICDVRIPES----------------------------------------- 180
+ H++G + D P++
Sbjct: 152 ETHELGGSAVVVDRATPKAREDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDH 211
Query: 181 ------TKIGTEEP---VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PF 226
+K G EP ++ K+FVG L P+ DLR++F +G + DV IP+
Sbjct: 212 PGPIYGSKHGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGH 271
Query: 227 REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSP 286
R F FVTF + VA + + I +V + ATP +++ + + N
Sbjct: 272 RGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATP---VDDARPSGNFM---------- 318
Query: 287 MSNSRQ-YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
M+NS + +GG G + + GG DYDDW +G
Sbjct: 319 MNNSMESFGGYGGPVRSYGRMYGGL-------DYDDWGYG 351
>gi|217074298|gb|ACJ85509.1| unknown [Medicago truncatula]
gi|388503058|gb|AFK39595.1| unknown [Medicago truncatula]
Length = 397
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++ LVVLGIPW LKEY ++G LE V +++TGRS+GFG++ F+S + A +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ +H +G+R+ +V++ + K P +++FV + P +TE R HFE YG +
Sbjct: 61 VLSGEHVLGDRMLEVKV-ATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 DVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
D+ +PK R F+TF ++L+ + + VVV ATPK+
Sbjct: 120 DLCMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKE 170
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 72/274 (26%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + T+ + +FE++G + + D+ + +G GFI F + ES M
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLCMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 164 KKHKIGNR--ICDVRIPESTKI-------------------------------------- 183
+ H++G + D P+ +
Sbjct: 152 ETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPG 211
Query: 184 ---GTEEP---VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFV 232
G EP ++ K+FVG L P+ DLR++F +G + DV IP+ R F FV
Sbjct: 212 PIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVCIPRDPKRTGHRGFGFV 271
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ 292
TF + VA + + I +V + ATP +++ + + N M+NS +
Sbjct: 272 TFADEGVADRVSLRPHEICGHEVAIDSATP---VDDARPSGNFM----------MNNSME 318
Query: 293 -YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHG 325
+GG G + + GG DYDDW +G
Sbjct: 319 SFGGYGGPVRSYGRMYGGL-------DYDDWGYG 345
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSLIG 245
K+ V + D+ L+E+ YG + D ++ K R F +VTF +D + L G
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 246 QHVNIKDKKVVVMEATPKKKM 266
+HV + D+ + V ATPK++M
Sbjct: 65 EHV-LGDRMLEVKVATPKEEM 84
>gi|356496896|ref|XP_003517301.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 362
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++ LVVLGIPW L+EY +FG LE V +++TGRS+GFG++ F+S + A +
Sbjct: 1 MEQRKLVVLGIPWDIDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 161 AMLKKHKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ +H +GNR +V++ + K PV +++FV + +TE+ R HFE YG +
Sbjct: 61 VLSSEHILGNRTLEVKV-ATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEIT 119
Query: 219 DVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
D+ +PK R F+TF ++L+ + + VVV ATPK
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPK 169
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 78/285 (27%)
Query: 100 PVQN-TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
PV+ T + V IP + T+ + +FE++G + + D+ + +G GFI F+S +S
Sbjct: 87 PVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSV 146
Query: 159 LKAMLKKHKIGNR----------------ICDVRIPESTKIGT----------------- 185
M + H++G I + +P T+ G
Sbjct: 147 ENLMSETHELGGSAVVVDRATPKDDDFKPIGRMPLPPPTQGGYGAYNAYISAATRYAALG 206
Query: 186 -----EEP------------VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK---- 224
++P + K+FVG L P+ T DLR++F +G ++DV +P+
Sbjct: 207 APTLYDQPGPIYGRGDPSRRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKR 266
Query: 225 -PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRS 283
R F FVTF D VA + + I +V + ATP NF
Sbjct: 267 TGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGP----SGNF------- 315
Query: 284 RSPMSNSRQ-YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
M NS + +GG G + + G D+DDW +G G
Sbjct: 316 ---MMNSMESFGGYGGPVRSYGRMYGSL-------DFDDWGYGIG 350
>gi|346326836|gb|EGX96432.1| RNA recognition protein, RNP-1 [Cordyceps militaris CM01]
Length = 525
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D NTGRS+GFGF+ F ++ M+K+
Sbjct: 117 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFGFLTFKDAKTVNIVMVKE 176
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ D T+ + RE F +G V+D +
Sbjct: 177 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQDTTDQEFREFFAQFGRVIDATLM 231
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNN 275
+P R F FVTFE ++ + I + I K + V A P+ + E +D RN
Sbjct: 232 MDKDTGRP-RGFGFVTFESEAGVDACINIPLEIHGKPIEVKRAQPRGNLREEEDAAKRNK 290
Query: 276 FDRRNDRSR 284
F + +D+ +
Sbjct: 291 FKKGDDQGQ 299
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ TD + +E+F QFG + A + +DK+TGR +GFGF+ F S E+ + A
Sbjct: 197 KTSKIFVGGVSQDTTDQEFREFFAQFGRVIDATLMMDKDTGRPRGFGFVTFES-EAGVDA 255
Query: 162 ML 163
+
Sbjct: 256 CI 257
>gi|326514108|dbj|BAJ92204.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525627|dbj|BAJ88860.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ LVVLGIPW LKEY +FG+L+ V D+++GRS+GFG++ FSS E A +
Sbjct: 3 SKLVVLGIPWDVDTEGLKEYMSKFGSLDDCIVMKDRSSGRSRGFGYVTFSSVEDAKNVVN 62
Query: 164 KKHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
+H +G+R +V+I P+ + A+++FV + + ES R HF+ +G + D+
Sbjct: 63 SEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFGEITDLY 122
Query: 222 IPKPF-----REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
+PK R FVTF +++ ++ I VVV ATPK + R
Sbjct: 123 MPKELGSKEHRGIGFVTFRSAECVDNVMQENHEIDGTTVVVDRATPKDEEVRHPPRRGGA 182
Query: 277 DR 278
+R
Sbjct: 183 ER 184
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 56/221 (25%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
SG + T + V IP + ++ + +F+ FG + + + + +G GF+ F S E
Sbjct: 86 SGNKKATRIFVARIPQSVDESMFRRHFQSFGEITDLYMPKELGSKEHRGIGFVTFRSAEC 145
Query: 158 ALKAMLKKHKI-GNRIC---------DVRIPE--------------------STKIGT-- 185
M + H+I G + +VR P +T+
Sbjct: 146 VDNVMQENHEIDGTTVVVDRATPKDEEVRHPPRRGGAEREGGYGSYNAYITAATRYAALG 205
Query: 186 ------------------EEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-- 224
E PV+SK +FVG L + DL ++F +G +VD IPK
Sbjct: 206 VPTLYDHPGPAYGRGYLNEPPVSSKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDP 265
Query: 225 ---PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF D VA + + I ++V V A P
Sbjct: 266 KKSGHRGFGFVTFAEDGVADRVARRSHEILGQEVAVDSAAP 306
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
N PV + + V +P +DL +YF +FG + A + D +GFGF+ F+
Sbjct: 223 NEPPVSSKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKKSGHRGFGFVTFAEDG 282
Query: 157 SALKAMLKKHKI 168
A + + H+I
Sbjct: 283 VADRVARRSHEI 294
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L+EY +FG L+ V D+++GRS+GFG++ FSS E A + +
Sbjct: 5 LVVLGIPWDVDTEGLREYMSKFGPLDDCIVMKDRSSGRSRGFGYVTFSSEEDAKNVVNCE 64
Query: 166 HKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +G+R +V+I P+ + A+++FV + + ES R HF+ +G ++D+ +P
Sbjct: 65 HILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFGEIIDLYMP 124
Query: 224 KPF-----REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
K R FVTF ++ + + VVV ATPK + + R R+
Sbjct: 125 KELGSKDHRGIGFVTFRSAECVDDVMKETHELDGTTVVVDRATPKDE-DVRHPPRSR--- 180
Query: 279 RNDRSRSPMSNSRQYGGGNGY---------------YDNRQQQQG-GYNNK 313
R+P+ YG N Y YD+ Q G GY+N+
Sbjct: 181 -----RAPVHGDGGYGSYNAYITAATRYAALGVPTLYDHPGQAYGRGYSNE 226
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 62/225 (27%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS--KGFGFIRFSSH 155
SG + T + V IP + ++ + +F+ FG E ++ + K G +G GF+ F S
Sbjct: 86 SGNKKATRIFVARIPQSVDESMFRRHFQSFG--EIIDLYMPKELGSKDHRGIGFVTFRSA 143
Query: 156 ESALKAMLKKHKI-GNRIC---------DVRIPESTK----------------------- 182
E M + H++ G + DVR P ++
Sbjct: 144 ECVDDVMKETHELDGTTVVVDRATPKDEDVRHPPRSRRAPVHGDGGYGSYNAYITAATRY 203
Query: 183 --IG----------------TEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
+G + EP+ + K+FVG L + DL ++F +G +VD I
Sbjct: 204 AALGVPTLYDHPGQAYGRGYSNEPLVTGKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYI 263
Query: 223 PK-----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
PK R F FVTF D VA + + I ++V V A P
Sbjct: 264 PKDPKRSGHRGFGFVTFADDGVADRVARRSHEILGQEVAVDSAAP 308
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSL 243
+ASK+ V + D+ LRE+ +G + D ++ K R F +VTF + AK++
Sbjct: 1 MASKLVVLGIPWDVDTEGLREYMSKFGPLDDCIVMKDRSSGRSRGFGYVTFSSEEDAKNV 60
Query: 244 IGQHVNIKDKKVVVMEATPKKKM 266
+ + D+ + V ATPK++M
Sbjct: 61 VNCEHILGDRTLEVKIATPKEEM 83
>gi|110758129|ref|XP_392465.3| PREDICTED: RNA-binding protein squid-like isoform 1 [Apis
mellifera]
Length = 358
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q +RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DAAENGQESQEERSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K K+FVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMAAGDHVINNKKVD---PKKAK-----ARHGKIFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 142 STELSDDDIKNFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|340729952|ref|XP_003403257.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Bombus
terrestris]
Length = 362
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DATENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K KVFVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMAAGDHIINNKKVD---PKKAK-----ARHGKVFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 142 STELSDDDIKHFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|350396366|ref|XP_003484530.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Bombus
impatiens]
Length = 362
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DAAENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K KVFVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMAAGDHIINNKKVD---PKKAK-----ARHGKVFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 142 STELSDDDIKHFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|350396363|ref|XP_003484529.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Bombus
impatiens]
Length = 314
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DAAENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K KVFVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMAAGDHIINNKKVD---PKKAK-----ARHGKVFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 142 STELSDDDIKHFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|340729954|ref|XP_003403258.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Bombus
terrestris]
Length = 314
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DATENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I N+ D P+ K KVFVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMAAGDHIINNKKVD---PKKAK-----ARHGKVFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +V+V +P + F F+TFE + V L+ I
Sbjct: 142 STELSDDDIKHFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 65 APLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYF 124
AP++ Q+R + + A Q ++ P N ++ + + G+ W TD L++YF
Sbjct: 90 APVEAPQERQH------TEQKPAAQEEQQSPFNR---EDGKMFIGGLNWETTDESLRDYF 140
Query: 125 EQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIG 184
EQFG + V D TGRS+GFGF+ F + M K+H + +I D P+
Sbjct: 141 EQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPKCVQVVMSKEHHLDGKIID---PKRAIPR 197
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDS 238
E+ +K+FVG + D TE + R+ F +G V+D + +P R F FVTFE ++
Sbjct: 198 EEQEKTAKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKDTGRP-RGFGFVTFENEA 256
Query: 239 VAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQD 271
++ + Q ++ I K V V ATPK M ++ D
Sbjct: 257 AVENTMSQPYITIHGKPVEVKRATPKASMRDQHD 290
>gi|297598312|ref|NP_001045380.2| Os01g0945800 [Oryza sativa Japonica Group]
gi|57899379|dbj|BAD88026.1| RNA-binding like protein [Oryza sativa Japonica Group]
gi|215686359|dbj|BAG87620.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215706318|dbj|BAG93174.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674065|dbj|BAF07294.2| Os01g0945800 [Oryza sativa Japonica Group]
Length = 363
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ FSS + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
Query: 164 KKHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
+H +GNR +V+I P+ A+++FV + + ES R HFE YG + D+
Sbjct: 63 CEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLY 122
Query: 222 IPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+PK R F+TF+ S++ + VVV ATPK
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPK 169
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 56/222 (25%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ G + T + V IP + ++ + +FE +G + + + + +G GFI F S E
Sbjct: 85 SQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAE 144
Query: 157 SALKAMLKKHKI-GNRIC---------DVRIPES---------------------TKIGT 185
S M H++ G + +VR P S +G
Sbjct: 145 SVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGGYGAYNAYISAATRYAALGA 204
Query: 186 ----EEPVAS----------------KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK- 224
+ P ++ K+FVG L + DLR +F +G +VD IPK
Sbjct: 205 PTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKD 264
Query: 225 ----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF + VA + + I +V + A P
Sbjct: 265 PKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAP 306
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
Y +S + N + V +P DL+ YF +FG + A + D +GFGF+ F+
Sbjct: 220 YYGSSQGMGNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFA 279
Query: 154 SHESALKAMLKKHKI 168
A + + H+I
Sbjct: 280 DEGVADRVARRSHEI 294
>gi|452840783|gb|EME42721.1| hypothetical protein DOTSEDRAFT_73510 [Dothistroma septosporum
NZE10]
Length = 529
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 115/245 (46%), Gaps = 28/245 (11%)
Query: 40 PSAIGLKYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSG 99
P A G K E L++ H+ +D +QD Y Q R G
Sbjct: 51 PVAAGTLVKAEQDDN--NLSNPHVMGGMDNYQDGGGY------------QDSRPEERPIG 96
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
++ + + G+ W TD LK YF QFG + V D TGRS+GFGF+ F ++
Sbjct: 97 TKEDGKMFIGGLNWETTDESLKNYFSQFGEVIECTVMRDGATGRSRGFGFLTFKDPKTVN 156
Query: 160 KAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
M+K+H++ ++ D + IP E+ +K+FVG ++ D TESD +E F +G V
Sbjct: 157 TVMVKEHQLDGKLIDPKRAIPRD-----EQERTAKIFVGGVSQDATESDFKEFFMKFGRV 211
Query: 218 VDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+D + +P R F FVTF+ D + + ++I K + V A P+ KM E +
Sbjct: 212 LDATLMMDKDTGRP-RGFGFVTFDNDLAVERTLEGPLSILGKPIEVKRAQPRGKMGEDEP 270
Query: 272 NRNNF 276
+ F
Sbjct: 271 THSKF 275
>gi|19111886|ref|NP_595094.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676196|sp|O94432.1|YHKF_SCHPO RecName: Full=Uncharacterized RNA-binding protein C660.15
gi|4049514|emb|CAA22535.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe]
Length = 474
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 85 SSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
S A +S + + P D + + G+ W TD+ L++YFEQFG + V D TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
RS+GFGF+ F + + + M K+H + +I D P+ E+ +K+FVG + D
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID---PKRAIPREEQEKTAKMFVGGVPGDC 258
Query: 203 TESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKV 255
TE + R F +G V+D + +P R F FVT+E +S ++ + Q ++ I K V
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRP-RGFGFVTYENESAVEATMSQPYITIHGKPV 317
Query: 256 VVMEATPKKKMNERQD 271
V ATPK + + D
Sbjct: 318 EVKRATPKASLRDSHD 333
>gi|383851135|ref|XP_003701095.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Megachile
rotundata]
Length = 362
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DAAENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I + D P+ K K+FVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMSANDHIINGKKVD---PKKAK-----ARHGKIFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +VDV +P + F F+TFE + V L+ I
Sbjct: 142 STELSDEDIKNFFSQFGTIVDVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|222619863|gb|EEE55995.1| hypothetical protein OsJ_04743 [Oryza sativa Japonica Group]
Length = 372
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ FSS + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
Query: 164 KKHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
+H +GNR +V+I P+ A+++FV + + ES R HFE YG + D+
Sbjct: 63 CEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLY 122
Query: 222 IPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+PK R F+TF+ S++ + VVV ATPK
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPK 169
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSLIGQ 246
K+FVG L + DLR +F +G +VD IPK R F FVTF + VA + +
Sbjct: 240 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 299
Query: 247 HVNIKDKKVVVMEATP 262
I +V + A P
Sbjct: 300 SHEILGHEVAIDTAAP 315
>gi|358396002|gb|EHK45389.1| hypothetical protein TRIATDRAFT_131648 [Trichoderma atroviride IMI
206040]
Length = 405
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D ++GRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDAKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ D T+ + RE+F +G VVD +
Sbjct: 61 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNNFD 277
+P R F FVTFE ++ + I + I K + V +A P+ + E ++ R F
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEASKRGKF- 175
Query: 278 RRNDRSRSPMSNSRQYGGGN 297
R+ D + +Q GG N
Sbjct: 176 RKGDDQSGQVGMGQQMGGNN 195
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ TD + +EYF QFG + A + +DK+TGR +GFGF+ F S E+ + A
Sbjct: 81 KTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFES-EAGVDA 139
Query: 162 ML 163
+
Sbjct: 140 CI 141
>gi|291243919|ref|XP_002741849.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Saccoglossus kowalevskii]
Length = 415
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W T DLKEYF++FG + +K+D TGRS+GFGF+ F+ S K + +
Sbjct: 85 LFVGGLSWETTQKDLKEYFKKFGPVVDCTIKIDPVTGRSRGFGFVLFADGASVEKVLQPQ 144
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ RI D P+ K +P +K+FVG L P+ E++LR++F +GA+ +V +P
Sbjct: 145 EHKLDGRIID---PKRAKARGGQPPITKIFVGGLNPEYPENELRDYFTKFGAIKEVELPI 201
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
R F F+ FE + + + Q + + + K V +ATPK
Sbjct: 202 DRATNKRRGFCFIEFEKEDSVEEICKQQFHLLGNNKCEVKKATPK 246
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V G+ + +N+L++YF +FG ++ + +D+ T + +GF FI F +S +
Sbjct: 168 TKIFVGGLNPEYPENELRDYFTKFGAIKEVELPIDRATNKRRGFCFIEFEKEDSVEEICK 227
Query: 164 KK-HKIGNRICDVRIPESTKIGTEEPVASKVFVG 196
++ H +GN C+V+ T++ V + V G
Sbjct: 228 QQFHLLGNNKCEVKKATPKDQNTKQAVTAAVIPG 261
>gi|255948100|ref|XP_002564817.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591834|emb|CAP98089.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 456
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDESLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDAKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
+P R F FVTF+ D+ + + + + I K + V +A P+ + E D R
Sbjct: 116 MDKDTGRP-RGFGFVTFDGDAAVEKALSRPLEILGKPIEVKKAQPRGNLRENNDQR 170
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++F QFG + A + +DK+TGR +GFGF+ F + KA
Sbjct: 81 KTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMMDKDTGRPRGFGFVTFDGDAAVEKA 140
Query: 162 MLKKHKIGNRICDVR 176
+ + +I + +V+
Sbjct: 141 LSRPLEILGKPIEVK 155
>gi|270001992|gb|EEZ98439.1| hypothetical protein TcasGA2_TC000928 [Tribolium castaneum]
Length = 344
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+G+ A + D G + L V G+ W TD +L+++F Q+G +E NVK D NT
Sbjct: 37 NGSGDAPPADSGSADAPGRDDDRKLFVGGLSWETTDKELRDHFGQYGEIESINVKTDPNT 96
Query: 142 GRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
GRS+GF FI F++ E+ K + +H I N+ D P+ K K+FVG LT
Sbjct: 97 GRSRGFAFIVFNNAEAIDKVVAAGEHIINNKKVD---PKKAKA-----RHGKIFVGGLTN 148
Query: 201 DLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKK 254
+L++ D++ F YG +++V +P + F F+TFE + V L+ IKDK+
Sbjct: 149 ELSDDDIKNFFSQYGTIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKE 208
Query: 255 VVVMEATPK 263
V V +ATPK
Sbjct: 209 VDVKKATPK 217
>gi|91076876|ref|XP_976197.1| PREDICTED: similar to Bmsqd-2 isoform 3 [Tribolium castaneum]
Length = 323
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+G+ A + D G + L V G+ W TD +L+++F Q+G +E NVK D NT
Sbjct: 37 NGSGDAPPADSGSADAPGRDDDRKLFVGGLSWETTDKELRDHFGQYGEIESINVKTDPNT 96
Query: 142 GRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
GRS+GF FI F++ E+ K + +H I N+ D P+ K K+FVG LT
Sbjct: 97 GRSRGFAFIVFNNAEAIDKVVAAGEHIINNKKVD---PKKAKA-----RHGKIFVGGLTN 148
Query: 201 DLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKK 254
+L++ D++ F YG +++V +P + F F+TFE + V L+ IKDK+
Sbjct: 149 ELSDDDIKNFFSQYGTIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKE 208
Query: 255 VVVMEATPK 263
V V +ATPK
Sbjct: 209 VDVKKATPK 217
>gi|383851133|ref|XP_003701094.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Megachile
rotundata]
Length = 338
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
DA+ N +Q RS N + + L V G+ W TD +L+++F +G +E NVK D
Sbjct: 30 DAAENGQESQEDRSTGGNQDSLNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GF FI F+ ES K M H I + D P+ K K+FVG L
Sbjct: 90 NTGRSRGFAFIVFAKAESLDKIMSANDHIINGKKVD---PKKAK-----ARHGKIFVGGL 141
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ +L++ D++ F +G +VDV +P + F F+TFE + V L+ I
Sbjct: 142 STELSDEDIKNFFSQFGTIVDVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTING 201
Query: 253 KKVVVMEATPK 263
K+V V +ATPK
Sbjct: 202 KEVDVKKATPK 212
>gi|303312249|ref|XP_003066136.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105798|gb|EER23991.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040133|gb|EFW22067.1| heterogeneous nuclear ribonucleoprotein HRP1 [Coccidioides
posadasii str. Silveira]
Length = 495
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ D E D ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQDANEQDFKKFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
+P R F FVTF+ ++ ++ + Q + I K + V +A P+ + + D R
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEACLSQPLEILGKPIEVKKAQPRGNLRDEDDRR 170
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ + D K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 83 SKIFVGGVSQDANEQDFKKFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEACL 141
Query: 164 KK 165
+
Sbjct: 142 SQ 143
>gi|225563097|gb|EEH11376.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus G186AR]
Length = 410
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 156 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 215
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 216 HYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMID 272
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER---------- 269
+P R F FVTF+ ++ ++ + + I K + V +A P+ M E
Sbjct: 273 KDSGRP-RGFGFVTFDSEAAVEATLSGPLEILGKPIEVKKAQPRGNMREEDDRSRGSRRG 331
Query: 270 -QDNRNNFDRRNDRS 283
+D + F R NDRS
Sbjct: 332 MRDQQERFGRDNDRS 346
>gi|119193228|ref|XP_001247220.1| hypothetical protein CIMG_00991 [Coccidioides immitis RS]
Length = 506
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 12 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 71
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ D E D ++ F +G VVD +
Sbjct: 72 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQDANEQDFKKFFMQFGRVVDATLM 126
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
+P R F FVTF+ ++ ++ + Q + I K + V +A P+ + + D R
Sbjct: 127 IDKDTGRP-RGFGFVTFDSEAAVEACLSQPLEILGKPIEVKKAQPRGNLRDEDDRR 181
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ + D K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 94 SKIFVGGVSQDANEQDFKKFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEACL 152
Query: 164 KK 165
+
Sbjct: 153 SQ 154
>gi|330939341|ref|XP_003305832.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
gi|311316974|gb|EFQ86065.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
Length = 562
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 84 NSSATQSKRSYP---DNSGPV---QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
N+ A QS + P DN GP+ ++ + + G+ W T+ LK YF QFG + V
Sbjct: 79 NAGADQSYENAPMEDDNYGPINVKEDGKMFIGGLNWETTEESLKNYFSQFGEVSECTVMR 138
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFV 195
D TGRS+GFGF+ F + M+K+H + +I D + IP E+ SK+FV
Sbjct: 139 DSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPRE-----EQERTSKIFV 193
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN 249
G ++ + TE D F+ +G VVD + +P R F FVTF+ D+ + + +
Sbjct: 194 GGVSQEATEEDFTNFFKQFGRVVDATLMMDKETGRP-RGFGFVTFDGDAAVDATLRAPLQ 252
Query: 250 IKDKKVVVMEATPKKKMNERQ--DNRNNFDRRN 280
I K++ V A P+ M + + D F R N
Sbjct: 253 ILGKQIEVKRAQPRGNMRDEEGGDGGKKFGRNN 285
>gi|407928279|gb|EKG21140.1| hypothetical protein MPH_01533 [Macrophomina phaseolina MS6]
Length = 571
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 15/202 (7%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S P G ++ + + G+ W TD L++YF QFG + V D TGRS+GFGF
Sbjct: 88 SGNEQPSGIGIKEDGKMFIGGLNWETTDQSLRDYFSQFGEVAECTVMRDGATGRSRGFGF 147
Query: 150 IRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDL 207
+ F ++ M+K+H + +I D + IP E+ +K+FVG ++ + TE D
Sbjct: 148 LTFRDPKTVNIVMVKEHYLDGKIIDPKRAIPRE-----EQEKTAKIFVGGVSQEATEQDF 202
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEAT 261
+ FE +G V+D + +P R F FVTF+ ++ + + + I K + V A
Sbjct: 203 KSFFEQFGRVIDATLMMDKDTGRP-RGFGFVTFDGEAAVDACLQGPLAILGKPIEVKRAQ 261
Query: 262 PKKKMNERQDNRNN-FDRRNDR 282
P+ + + D+R F RR D+
Sbjct: 262 PRGNLKDNDDDRGGKFGRRGDK 283
>gi|322694374|gb|EFY86205.1| heterogeneous nuclear ribonucleoprotein HRP1 [Metarhizium acridum
CQMa 102]
Length = 516
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 23/221 (10%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNT----------DLVVLGIPWTFTDNDLKEYFEQFGTL 130
G+S+A + P +S P T + + G+ W TD L+EYFEQFG +
Sbjct: 75 GGGSSNAVAAPHQDPGSSTPPYGTVHKASAKDDGKMFIGGLNWETTDQSLREYFEQFGEV 134
Query: 131 EFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVA 190
V D TGRS+GFGF+ F ++ M+K+H + +I D P+ E+
Sbjct: 135 VECTVMRDSTTGRSRGFGFLTFKDAKTVNIVMVKEHFLDGKIID---PKRAIPRDEQEKT 191
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLI 244
SK+FVG ++ + T+ + R++F +G VVD + +P R F FVTFE ++ ++ I
Sbjct: 192 SKIFVGGVSQETTDQEFRDYFAQFGRVVDATLMMDKDTGRP-RGFGFVTFESEAGVEACI 250
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD--NRNNFDRRNDRS 283
+ I K V V A P+ + E ++ R+ F +++D+S
Sbjct: 251 NVPLEIHGKPVEVKRAQPRGNLREEEEAAKRSKF-KKDDQS 290
>gi|240279923|gb|EER43428.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus H143]
Length = 548
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 22/204 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 156 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 215
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 216 HYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMID 272
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER---------- 269
+P R F FVTF+ ++ ++ + + I K + V +A P+ M +
Sbjct: 273 KDSGRP-RGFGFVTFDSEAAVEATLSGPLEILGKPIEVKKAQPRGNMRDEDDRSRGSRRG 331
Query: 270 -QDNRNNFDRRNDRSRSPMSNSRQ 292
+D + F R NDRS NS+Q
Sbjct: 332 MRDQQERFGRDNDRSTG-QENSQQ 354
>gi|325093053|gb|EGC46363.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus H88]
Length = 687
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 25/197 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 156 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 215
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 216 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLM 270
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER-------- 269
+P R F FVTF+ ++ ++ + + I K + V +A P+ M +
Sbjct: 271 IDKDSGRP-RGFGFVTFDSEAAVEATLSGPLEILGKPIEVKKAQPRGNMRDEDDRSRGSR 329
Query: 270 ---QDNRNNFDRRNDRS 283
+D + F R NDRS
Sbjct: 330 RGMRDQQERFCRDNDRS 346
>gi|402081154|gb|EJT76299.1| hypothetical protein GGTG_06219 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 618
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L+EYF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 118 MFIGGLNWETTDQSLREYFSQFGEVIECTVMRDGSTGRSRGFGFLTFKDPKTVNIVMVKE 177
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ D T+ + ++ F +G VVD +
Sbjct: 178 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQDTTDQEFKDFFAQFGRVVDATLMMD 234
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTFE ++ + + Q + I K + V +A P+ M E ++
Sbjct: 235 KDTGRP-RGFGFVTFESEAGVDACLAQELEIHGKPIEVKKAQPRGNMREEEE 285
>gi|322711386|gb|EFZ02959.1| heterogeneous nuclear ribonucleoprotein HRP1 [Metarhizium
anisopliae ARSEF 23]
Length = 517
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 13/186 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L+EYFEQFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 114 MFIGGLNWETTDQSLREYFEQFGEVVECTVMRDSTTGRSRGFGFLTFKDAKTVNIVMVKE 173
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + R++F +G VVD +
Sbjct: 174 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDQEFRDYFAQFGRVVDATLMMD 230
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNNFD 277
+P R F FVTFE ++ ++ I + I K V V A P+ + E ++ R+ F
Sbjct: 231 KDTGRP-RGFGFVTFESEAGVEACINVPLEIHGKPVEVKRAQPRGNLREEEEAAKRSKF- 288
Query: 278 RRNDRS 283
+++D+S
Sbjct: 289 KKDDQS 294
>gi|269063716|emb|CAS85143.1| squid, variant D [Blattella germanica]
Length = 294
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|269063714|emb|CAS85142.1| squid, variant C [Blattella germanica]
Length = 318
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|269063712|emb|CAS85141.1| squid, variant B [Blattella germanica]
Length = 317
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|269063710|emb|CAS85140.1| squid, variant A [Blattella germanica]
Length = 341
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|322792842|gb|EFZ16675.1| hypothetical protein SINV_08972 [Solenopsis invicta]
Length = 335
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 15/187 (8%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N+ +Q RS + + + L V G+ W TD +L+E+F +G +E NVK D NTGR
Sbjct: 36 NNQESQEDRSVRASQDSLNDRKLFVGGLSWETTDKELREHFSAYGDIESINVKTDPNTGR 95
Query: 144 SKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
S+GF FI F+ ES K M H I N+ D P+ K K+FVG L+ +L
Sbjct: 96 SRGFAFIVFAKAESLDKIMSAGDHVINNKKVD---PKKAK-----ARHGKIFVGGLSTEL 147
Query: 203 TESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVV 256
++ D++ F +G +V+V +P + F F+TFE + V L+ I K+V
Sbjct: 148 SDDDIKNFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVD 207
Query: 257 VMEATPK 263
V +ATPK
Sbjct: 208 VKKATPK 214
>gi|259483749|tpe|CBF79395.1| TPA: heterogeneous nuclear ribonucleoprotein HRP1 (AFU_orthologue;
AFUA_2G06090) [Aspergillus nidulans FGSC A4]
Length = 559
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 14/180 (7%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P +G ++ + + G+ W TD LKEYF QFG ++ V D TGRS+GFGF+ F
Sbjct: 101 PQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKD 160
Query: 155 HESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
++ M+K+H + +I D + IP E+ SK+FVG ++ + TE D ++ F
Sbjct: 161 PKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEATEQDFKQFFM 215
Query: 213 YYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+G V+D + +P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 216 QFGRVIDATLMIDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKTIEVKKAQPRGNL 274
>gi|400601150|gb|EJP68793.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 522
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 27/224 (12%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNT----------DLVVLGIPWTFTDNDLKEYFEQFGTL 130
AS N + TQS+ P+ + P T + + G+ W TD L++YF QFG +
Sbjct: 84 ASNNHAPTQSEEE-PEFTAPPLGTVHKASAKDDGKMFIGGLNWETTDQSLRDYFSQFGEV 142
Query: 131 EFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEP 188
V D NTGRS+GFGF+ F ++ M+K+H + +I D + IP E+
Sbjct: 143 VECTVMRDSNTGRSRGFGFLTFKDAKTVNIVMVKEHYLDGKIIDPKRAIPRD-----EQE 197
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKS 242
SK+FVG ++ D T+ + R+ F +G V+D + +P R F FVTFE ++ +
Sbjct: 198 KTSKIFVGGVSQDTTDQEFRDFFAQFGRVIDATLMMDKDTGRP-RGFGFVTFESEAGVDN 256
Query: 243 LIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNNFDRRNDRSR 284
I + I K + V A P+ + E ++ R F + +D+ +
Sbjct: 257 CISIPLEIHGKPIEVKRAQPRGNLREEEEAAKRGKFKKVDDQGQ 300
>gi|340914891|gb|EGS18232.1| hypothetical protein CTHT_0062490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 700
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 73 RVYYCTFDASGNSSATQSKRSYPDNSGPVQ-------NTDLVVLGIPWTFTDNDLKEYFE 125
R +C A NS A +P +S P Q + + G+ W TD L+ YF
Sbjct: 194 RAVWCPPHA--NSPAL-----FPSSSCPYQLQVAIAIAKKMFIGGLNWETTDESLRNYFS 246
Query: 126 QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGT 185
QFG + V D TGRS+GFGF+ F + M+K+H + +I D P+
Sbjct: 247 QFGEVVECTVMRDSATGRSRGFGFLTFKDPKVVNIVMVKEHYLDGKIID---PKRAIPRD 303
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSV 239
E+ SK+FVG ++P+ T+ + RE+F +G VVD + +P R F FVTFE ++
Sbjct: 304 EQEKTSKIFVGGVSPETTDHEFREYFSQFGRVVDATLMMDKDTGRP-RGFGFVTFESEAG 362
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMNERQD-NRNNFDRR 279
++ + + + K + V +A P+ + + +D R F R+
Sbjct: 363 VEACLNAKLELHGKPIEVKKAQPRGNLRDDEDARRGKFGRK 403
>gi|340515592|gb|EGR45845.1| predicted protein [Trichoderma reesei QM6a]
Length = 515
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 12/186 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D ++GRS+GFGF+ F ++ M+K+
Sbjct: 114 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDPKTVNIVMVKE 173
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ D T+ + RE+F +G VVD +
Sbjct: 174 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMD 230
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNNFD 277
+P R F FVTFE ++ + I + I K + V +A P+ + E ++ R F
Sbjct: 231 KDTGRP-RGFGFVTFESEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEASKRGKFR 289
Query: 278 RRNDRS 283
+ +D+S
Sbjct: 290 KGDDQS 295
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ TD + +EYF QFG + A + +DK+TGR +GFGF+ F S E+ + A
Sbjct: 194 KTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFES-EAGVDA 252
Query: 162 ML 163
+
Sbjct: 253 CI 254
>gi|224285299|gb|ACN40374.1| unknown [Picea sitchensis]
Length = 520
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N LVVLGIPW L +Y QFG LE V D+ +GRS+GFG++ FSS A KAM
Sbjct: 5 NRKLVVLGIPWDVDTEGLGQYMCQFGDLEDVIVMKDRVSGRSRGFGYVTFSSDGGAEKAM 64
Query: 163 LKKHKIGNRICDVRI--------PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+H + R +V+I P S KI +++FV ++P +T+ R +FE Y
Sbjct: 65 AGQHVLQGRTLEVKIATPKDEMRPTSRKI-------TRIFVARISPTVTDEMFRSYFEKY 117
Query: 215 GAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
G+++D +P K R FVT+E ++ + + + V ATPK++
Sbjct: 118 GSILDAYMPKDQTTKQHRGIGFVTYENAESVDEVMSESHELAGSTIAVDRATPKEE 173
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 111 IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGN 170
IP T DL+ YF QFG + A + D +GFGF+ F+ +A ++H+I
Sbjct: 280 IPVEATAEDLQLYFSQFGQVLDAYLPKDAKKISHRGFGFVTFAEESTAEHVSQRRHEILG 339
Query: 171 RICDV----RIPESTKIGTEEP--VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+ V + E+ +G P + K+F+G + + T DLR +F YG ++DV +PK
Sbjct: 340 HLIAVDRASPLDETPSVGVYAPSGLGKKIFIGRIPVEATTEDLRLYFSQYGRILDVYLPK 399
Query: 225 -----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF +S A+ + + I ++ V A P
Sbjct: 400 DAKKISHRGFGFVTFAEESAAEHVAQKAHEILGHRIAVDRAAP 442
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSL 243
+ K+FVG + + T DL+ +F +G V+D +PK R F FVTF +S A+ +
Sbjct: 271 MGRKIFVGRIPVEATAEDLQLYFSQFGQVLDAYLPKDAKKISHRGFGFVTFAEESTAEHV 330
Query: 244 IGQHVNIKDKKVVVMEATP 262
+ I + V A+P
Sbjct: 331 SQRRHEILGHLIAVDRASP 349
>gi|224030865|gb|ACN34508.1| unknown [Zea mays]
gi|414878724|tpg|DAA55855.1| TPA: heterogeneous nuclear ribonucleoprotein 27C isoform 1 [Zea
mays]
gi|414878725|tpg|DAA55856.1| TPA: heterogeneous nuclear ribonucleoprotein 27C isoform 2 [Zea
mays]
Length = 360
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ F+S + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMAKFGPLDDCVVMKERSSGRSRGFGYVTFASADDAKNVLD 62
Query: 164 KKHKIGNRICDVRIP----ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+H +G+R +V+I E GT++ A+++FV + + ES R HFE +G ++D
Sbjct: 63 CEHVLGSRTLEVKIATPKEEMKSQGTKK--ATRIFVARIPQSVDESMFRRHFEAFGEILD 120
Query: 220 VLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+ +PK R F+TF+ S++ + + VVV ATPK++
Sbjct: 121 LYMPKEHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTVVVDRATPKEE 171
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ G + T + V IP + ++ + +FE FG + + + + +G GFI F S E
Sbjct: 85 SQGTKKATRIFVARIPQSVDESMFRRHFEAFGEILDLYMPKEHGSKGHRGIGFITFQSAE 144
Query: 157 SALKAMLKKHKI-GNRIC---------DVRIPESTK------------------------ 182
S M + H++ G + DVR P S
Sbjct: 145 SVDSIMQESHELDGTTVVVDRATPKEEDVRYPPSRPSQGGYGAYNAYISAATRYATLGAP 204
Query: 183 --------------IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK---- 224
G+ + V K+FVG L + DLR +F +G +VD IPK
Sbjct: 205 TLYDHPGSAYGRGYYGSSQAVGKKIFVGRLPQEANTDDLRHYFGRFGRIVDAYIPKDPKR 264
Query: 225 -PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF + VA+ + + I +V + A P
Sbjct: 265 SGHRGFGFVTFADEGVAERVSRRSHEILGHEVAIDTAAP 303
>gi|148224084|ref|NP_001080489.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus laevis]
gi|27694771|gb|AAH43814.1| Hnrpab-prov protein [Xenopus laevis]
Length = 324
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 96 DNSGPV-QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
D S P+ + + V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F
Sbjct: 55 DISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKD 114
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
ES K + K+H++ R+ D P+ ++P+ K+FVG L P+ E +RE+FE
Sbjct: 115 AESVDKVLEHKEHRLDGRLID---PKKAMAMKKDPI-KKIFVGGLNPEAGEDQIREYFET 170
Query: 214 YGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + + +P R F F+TF E D V K L + N+ K + A PK+
Sbjct: 171 FGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPKE 227
>gi|359480888|ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
1 [Vitis vinifera]
gi|359480890|ref|XP_003632540.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
2 [Vitis vinifera]
gi|296082418|emb|CBI21423.3| unnamed protein product [Vitis vinifera]
Length = 359
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW + L++Y +FG L+ V +++TGRS+GFG++ F S E A K + +
Sbjct: 5 LVVLGIPWDVDTDGLRDYMSKFGELKDVIVMKERSTGRSRGFGYVTFGSVEDAKKVLSSE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +GNR+ +V++ + P+ +++FV + + E+ R +FE YG + D+ +P
Sbjct: 65 HFLGNRMLEVKVATPKEEMMRAPIKKVTRIFVARIPDSVNEAAFRSYFETYGEITDLYMP 124
Query: 224 -----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
K R F+TF +L+ + + VVV ATPK++
Sbjct: 125 KDHGSKGHRGIGFITFASAESVDNLMVETHELGGSAVVVDRATPKEE 171
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 109/281 (38%), Gaps = 71/281 (25%)
Query: 100 PVQN-TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
P++ T + V IP + + + YFE +G + + D + +G GFI F+S ES
Sbjct: 87 PIKKVTRIFVARIPDSVNEAAFRSYFETYGEITDLYMPKDHGSKGHRGIGFITFASAESV 146
Query: 159 LKAMLKKHKIGNRICDV--------------RIPES---------------TKIG----- 184
M++ H++G V R+P+ +G
Sbjct: 147 DNLMVETHELGGSAVVVDRATPKEEEFRPVSRVPQGGYGAYNAYITAATRYAALGAPTLY 206
Query: 185 -----------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFRE 228
+ + K+FVG L + + DLR++F +G ++DV +PK R
Sbjct: 207 DHPGSVYGRGESTRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPKDPKRSGHRG 266
Query: 229 FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMS 288
F FVTF D VA + + I ++V + ATP + NF M
Sbjct: 267 FGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG----SSGNF---------MMD 313
Query: 289 NSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
++ +GG G + G D+DDW +G GG
Sbjct: 314 SAEPFGGFGGPMRTYGRMYGSL-------DFDDWGYGIGGG 347
>gi|302850790|ref|XP_002956921.1| hypothetical protein VOLCADRAFT_107445 [Volvox carteri f.
nagariensis]
gi|300257802|gb|EFJ42046.1| hypothetical protein VOLCADRAFT_107445 [Volvox carteri f.
nagariensis]
Length = 444
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q+ + + G+ W T L+ YFE FG++ A V ++N GR +GFGF+ F S E A K
Sbjct: 5 QSAKVFIGGLSWETTGEKLRAYFENFGSVREAFVSYNRNNGRPRGFGFVVFESPEVADKV 64
Query: 162 MLKKHKIGNRICDVR-------IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+ KH I R + + PE + G+ K+FVG L P + E+ LR+HF +
Sbjct: 65 VATKHTIDRREVEAKKAVPKEETPEEKQQGSAPQRTKKIFVGGLAPSVDEAQLRQHFSQF 124
Query: 215 GAVVDVLI------PKPFREFAFVTF-ELDSVAKSLI-GQHVNIKDKKVVVMEATPKKKM 266
G V D ++ +P R F FVTF E D+V + G I DK + V A P+ +M
Sbjct: 125 GTVEDAVVMYDHENKRP-RGFGFVTFAEEDAVDRVFSHGAVQTIADKPIEVKAAVPRDQM 183
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP------KPFREFAFVTFELDSVAKSL 243
++KVF+G L+ + T LR +FE +G+V + + +P R F FV FE VA +
Sbjct: 6 SAKVFIGGLSWETTGEKLRAYFENFGSVREAFVSYNRNNGRP-RGFGFVVFESPEVADKV 64
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ I ++V +A PK++ E +
Sbjct: 65 VATKHTIDRREVEAKKAVPKEETPEEK 91
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
S P + + V G+ + + L+++F QFGT+E A V D R +GFGF+ F+ ++
Sbjct: 95 SAPQRTKKIFVGGLAPSVDEAQLRQHFSQFGTVEDAVVMYDHENKRPRGFGFVTFAEEDA 154
Query: 158 ALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
+ H I D +P+ K V D LR H YYG
Sbjct: 155 VDRVF--SHGAVQTIAD------------KPIEVKAAVPR---DQMPPTLRMHGSYYG 195
>gi|269063722|emb|CAS85146.1| squid, variant G [Blattella germanica]
Length = 274
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|302914266|ref|XP_003051103.1| hypothetical protein NECHADRAFT_41418 [Nectria haematococca mpVI
77-13-4]
gi|256732041|gb|EEU45390.1| hypothetical protein NECHADRAFT_41418 [Nectria haematococca mpVI
77-13-4]
Length = 546
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 15/192 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 117 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSTGRSRGFGFLTFKDAKTVNIVMVKE 176
Query: 166 HKIGNRICDVRI------PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
H + +I R+ P+ E+ SK+FVG ++ + T+ + +E+F +G VVD
Sbjct: 177 HFLDGKIVSYRLIPQQIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVD 236
Query: 220 VLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD-- 271
+ +P R F FVTFE ++ + I + I K + V +A P+ + E ++
Sbjct: 237 ATLMMDKDTGRP-RGFGFVTFESEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEAS 295
Query: 272 NRNNFDRRNDRS 283
RN F + D+S
Sbjct: 296 RRNKFRKDGDQS 307
>gi|269063720|emb|CAS85145.1| squid, variant F [Blattella germanica]
Length = 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|269063718|emb|CAS85144.1| squid, variant E [Blattella germanica]
Length = 321
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI FS +S K +
Sbjct: 61 LFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSAG 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L PDL++ D++ F YG +V+V +P
Sbjct: 121 DHVINNKKVD---PKKAKA-----RHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVEMPF 172
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V + L+ +I K+V V +ATPK
Sbjct: 173 DKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPK 217
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF-ELDSVAKSL-I 244
K+FVG L+ + T+ +LR+HF YG + + + P R FAF+ F + DS+ K L
Sbjct: 60 KLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKVLSA 119
Query: 245 GQHVNIKDKKV 255
G HV I +KKV
Sbjct: 120 GDHV-INNKKV 129
>gi|240849376|ref|NP_001155365.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
gi|49257602|gb|AAH74212.1| Unknown (protein for MGC:83385) [Xenopus laevis]
gi|157415960|gb|ABV54637.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
Length = 326
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+ + V G+ W + DLK+YFE+FG + +K+D NTGRS+GFGFI F S K
Sbjct: 62 TEGVKMFVGGLSWDTSKKDLKDYFEKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDK 121
Query: 161 AM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+ K+H++ R+ D P+ +EP+ K+FVG L P+ E +RE+FE +G +
Sbjct: 122 VLEHKEHRLDGRLID---PKKAMAMKKEPI-KKIFVGGLNPEAGEDKIREYFETFGEIEA 177
Query: 220 VLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
V +P R F F+TF E + V K L + N+ K + A PK+
Sbjct: 178 VELPMDPKTNKRRGFVFITFKEEEPVKKILEKKFHNVSGSKCEIKIAQPKE 228
>gi|408396972|gb|EKJ76123.1| hypothetical protein FPSE_03598 [Fusarium pseudograminearum CS3096]
Length = 546
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 17/203 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 122 MFIGGLNWETTDQSLRDYFAQFGEVVECTVMRDSSTGRSRGFGFLTFKDAKTVNIVMVKE 181
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + T+ + +E+F +G VVD +
Sbjct: 182 HFLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLM 236
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNN 275
+P R F FVTFE ++ + I + I K + V +A P+ + E ++ R
Sbjct: 237 MDKDTGRP-RGFGFVTFENEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEASRRGK 295
Query: 276 FDRRNDRSRSPMSNSRQYGGGNG 298
F + D+S S +Q G NG
Sbjct: 296 FRKDGDQSNQ-GSMGQQMGNNNG 317
>gi|332374124|gb|AEE62203.1| unknown [Dendroctonus ponderosae]
Length = 290
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 15/189 (7%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+G A + D G + L V G+ W TD +L+EYF ++G +E NVK D T
Sbjct: 28 NGGGDAPVTDSGSADKPGKDDDRKLFVGGLSWETTDKELREYFGKYGEIESINVKTDSMT 87
Query: 142 GRSKGFGFIRFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
GRS+GF FI F S + + +H I + D P+ K K+FVG ++P
Sbjct: 88 GRSRGFAFIVFQDAASIDRVSAAGEHTINGKKVD---PKKAK-----ARHGKIFVGGISP 139
Query: 201 DLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKK 254
+L++ D+ E+F YG +++V +P + F F+TFE + V L+ + IKDK+
Sbjct: 140 ELSDDDINEYFGQYGTIMEVEMPFDKQKNQRKGFCFITFESEQVVADLLKRPKQVIKDKE 199
Query: 255 VVVMEATPK 263
V V +ATPK
Sbjct: 200 VDVKKATPK 208
>gi|342887592|gb|EGU87074.1| hypothetical protein FOXB_02468 [Fusarium oxysporum Fo5176]
Length = 541
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 121 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSTGRSRGFGFLTFKDAKTVNIVMVKE 180
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + +E+F +G VVD +
Sbjct: 181 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLMMD 237
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRR 279
+P R F FVTFE ++ + I + I K + V +A P+ + E ++ R
Sbjct: 238 KDTGRP-RGFGFVTFENEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEASRRGKFR 296
Query: 280 NDRSRSPMSNSRQYGGGNG 298
D +S + Q G NG
Sbjct: 297 KDGDQSSQGSMGQQMGNNG 315
>gi|426220118|ref|XP_004004264.1| PREDICTED: TAR DNA-binding protein 43-like [Ovis aries]
Length = 283
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 87/193 (45%), Gaps = 57/193 (29%)
Query: 79 FDASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
D + SSA + KR+ VQ T DL+VLG+PW T+ DLK+YF FG +
Sbjct: 1 MDETDASSAVKVKRA-------VQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQQSP 53
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KVFVG 196
D EP+ S KVFVG
Sbjct: 54 D------------------------------------------------EPLRSRKVFVG 65
Query: 197 SLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
T D+T +LR+ F YG VVDV IPKPFR FAFVTF D VA+SL G+ + IK V
Sbjct: 66 RCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVH 125
Query: 257 VMEATPKKKMNER 269
+ A PK N +
Sbjct: 126 ISNAEPKHNSNRQ 138
>gi|348041339|ref|NP_001231688.1| TAR DNA-binding protein 43 isoform 3 [Xenopus (Silurana)
tropicalis]
Length = 247
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDV 220
M ++H I R CD ++P S +EP+ S KVFVG T D++ +LR+ F YG VVDV
Sbjct: 1 MSQRHMIDGRWCDCKLPNSKS--PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDV 58
Query: 221 LIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
IPKPFR FAFVTF D VA+SL G+ + IK V V A PK N RQ R
Sbjct: 59 FIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGVSVHVSTAEPKHN-NNRQLER 110
>gi|241627626|ref|XP_002408070.1| RNA-binding protein musashi, putative [Ixodes scapularis]
gi|215501115|gb|EEC10609.1| RNA-binding protein musashi, putative [Ixodes scapularis]
Length = 353
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 15/166 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W + DL+EYF +FG + N+K D TG+S+GFGF+ F++ E A++A+LK
Sbjct: 63 LFVGGISWDTDNKDLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFTAKE-AIEAVLKA 121
Query: 166 --HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H + + D P+ K P K+FVG L D+ E+D++ +FE +G V +V +P
Sbjct: 122 TPHTVKGKQID---PKPAKA---RPGIKKIFVGGLESDMPEADIKAYFEKFGPVENVELP 175
Query: 224 -----KPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
R+FAFVTFE DSV I +K+ + +ATPK
Sbjct: 176 FDKAKNQRRQFAFVTFEREDSVELVCREPKQKIGNKECDIKKATPK 221
>gi|47087353|ref|NP_998557.1| heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
gi|33416353|gb|AAH55525.1| Heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
Length = 296
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL +Y +FG + +K D TGRS+GFGF+ F ES + + L
Sbjct: 32 MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLELT 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ ++ D + ++ K G E P KVFVG L+PD+TE LRE+F YG + + +P
Sbjct: 92 EHKLDGKLIDPKRAKAIK-GKEPP--KKVFVGGLSPDITEEQLREYFGVYGEIESIELPT 148
Query: 225 PF-----REFAFVTFELDS-VAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
R F FVTF L+ V K L ++ I K + A PK+ ++Q NR+
Sbjct: 149 DTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPKEVYRQQQ-NRD 203
>gi|451850144|gb|EMD63446.1| hypothetical protein COCSADRAFT_160854 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 84 NSSATQSKRSYP---DNSGPV---QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
N+ QS + P DN GP+ ++ + + G+ W T++ LK YF QFG + V
Sbjct: 81 NAGGEQSFDNAPAEDDNYGPINVKEDGKMFIGGLNWETTEDSLKGYFSQFGEVSECTVMR 140
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFV 195
D TGRS+GFGF+ F + M+K+H + +I D + IP E+ SK+FV
Sbjct: 141 DSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPRE-----EQERTSKIFV 195
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN 249
G ++ + TE D F+ +G VVD + +P R F FVTF+ D+ + + +
Sbjct: 196 GGVSQEATEEDFTNFFKQFGRVVDATLMMDKETGRP-RGFGFVTFDGDAAVDATLRGPLQ 254
Query: 250 IKDKKVVVMEATPKKKM--NERQDNRNNFDRRN 280
I K++ V A P+ M ++ D F R N
Sbjct: 255 ILGKQIEVKRAQPRGNMRDDDGGDGNKKFGRGN 287
>gi|160333913|ref|NP_001103930.1| heterogeneous nuclear ribonucleoprotein D0 [Danio rerio]
gi|141796298|gb|AAI39675.1| Hnrnpd protein [Danio rerio]
Length = 314
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K + +K
Sbjct: 56 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQK 115
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F+ YG V + +P
Sbjct: 116 EHKLNGKVIDPKKAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPM 172
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + + NI K V A K+
Sbjct: 173 ENKTNKRRGFCFITFKEEEPVKKIMEKMYHNIGLSKCEVKVAMSKE 218
>gi|327303046|ref|XP_003236215.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton rubrum
CBS 118892]
gi|326461557|gb|EGD87010.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton rubrum
CBS 118892]
Length = 489
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE + ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFD 277
+P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRLGK 174
Query: 278 R--RNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
R R+DR + R G +G N Q Q
Sbjct: 175 RGFRDDR----FKDDRGSGSDSGQQSNTQNQ 201
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 83 SKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEATL 141
>gi|302422014|ref|XP_003008837.1| nuclear polyadenylated RNA-binding protein [Verticillium albo-atrum
VaMs.102]
gi|261351983|gb|EEY14411.1| nuclear polyadenylated RNA-binding protein [Verticillium albo-atrum
VaMs.102]
Length = 473
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 14/179 (7%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
++T + + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++
Sbjct: 44 ARDTKMFIGGLNWETTDQSLRDYFAQFGEVVECTVMRDSTTGRSRGFGFLTFKDAKTVNI 103
Query: 161 AMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
M+K+H + +I D + IP E+ SK+FVG ++ + T+ + +++F +G VV
Sbjct: 104 VMVKEHFLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQETTDQEFKDYFAQFGRVV 158
Query: 219 DVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
D + +P R F FVTFE + + + H+ I K + V +A P+ + E ++
Sbjct: 159 DATLMMDKDTGRP-RGFGFVTFESEEGVDACLKTHLEIHGKPIEVKKAQPRGNLREEEE 216
>gi|406860631|gb|EKD13688.1| hypothetical protein MBM_07889 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 453
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG + V D +GRS+GFGF+ F + M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVLECTVMRDGASGRSRGFGFLTFKDARTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D +E+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQEATEQDFKEYFMQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTF+ ++ + + + I K + V +A P+ M E ++
Sbjct: 118 KDTGRP-RGFGFVTFDSEAAVDACLDSPLEILGKPIEVKKAQPRGNMREEEE 168
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ D KEYF QFG + A + +DK+TGR +GFGF+ F S E+A+ A L
Sbjct: 83 SKIFVGGVSQEATEQDFKEYFMQFGRVVDATLMMDKDTGRPRGFGFVTFDS-EAAVDACL 141
>gi|302509632|ref|XP_003016776.1| hypothetical protein ARB_05069 [Arthroderma benhamiae CBS 112371]
gi|291180346|gb|EFE36131.1| hypothetical protein ARB_05069 [Arthroderma benhamiae CBS 112371]
Length = 489
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE + ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFD 277
+P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRLGK 174
Query: 278 R--RNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
R R+DR + R G +G N Q Q
Sbjct: 175 RGFRDDR----FKDDRGSGSDSGQQSNTQNQ 201
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 83 SKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEATL 141
>gi|15290173|dbj|BAB63863.1| putative RNA-binding like protein [Oryza sativa Japonica Group]
Length = 523
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHK 167
VLGIPW L+EY +FG L+ V ++++GRS+GFG++ FSS + A + +H
Sbjct: 167 VLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLECEHV 226
Query: 168 IGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225
+GNR +V+I P+ A+++FV + + ES R HFE YG + D+ +PK
Sbjct: 227 LGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKE 286
Query: 226 -----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F+TF+ S++ + VVV ATPK
Sbjct: 287 HGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPK 329
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 56/220 (25%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
G + T + V IP + ++ + +FE +G + + + + +G GFI F S ES
Sbjct: 247 GSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESV 306
Query: 159 LKAMLKKHKI-GNRIC---------DVRIPES---------------------TKIGT-- 185
M H++ G + +VR P S +G
Sbjct: 307 DSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGGYGAYNAYISAATRYAALGAPT 366
Query: 186 --EEPVAS----------------KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK--- 224
+ P ++ K+FVG L + DLR +F +G +VD IPK
Sbjct: 367 LYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPK 426
Query: 225 --PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF + VA + + I +V + A P
Sbjct: 427 RSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAP 466
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
Y +S + N + V +P DL+ YF +FG + A + D +GFGF+ F+
Sbjct: 380 YYGSSQGMGNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFA 439
Query: 154 SHESALKAMLKKHKI 168
A + + H+I
Sbjct: 440 DEGVADRVARRSHEI 454
>gi|417409403|gb|JAA51208.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 292
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + NDLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 32 MFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ +EPV K+FVG L P+ TE ++RE+F +G + + +P
Sbjct: 92 EHRLDGRVID---PKKAMAMKKEPV-KKIFVGGLNPEATEEEIREYFGEFGEIEAIDLPM 147
Query: 224 ----KPFREFAFVTF--ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K+L + I K + A P+K
Sbjct: 148 DPKSHKRRGFVFITFKEEEEPVRKALEKKFHTIGASKCEIKVALPRK 194
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D +++DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 29 AGKMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 88
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 89 DQKEHRLDGRVIDPKKAMAMKKEPVKKI 116
>gi|218189712|gb|EEC72139.1| hypothetical protein OsI_05159 [Oryza sativa Indica Group]
Length = 864
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ FSS + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
Query: 164 KKHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
+H +GNR +V+I P+ A+++FV + + ES R HFE YG + D+
Sbjct: 63 CEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLY 122
Query: 222 IPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+PK R F+TF+ S++ + VVV ATPK
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPK 169
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSLIGQ 246
K+FVG L + DLR +F +G +VD IPK R F FVTF + VA + +
Sbjct: 240 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 299
Query: 247 HVNIKDKKVVVMEATP 262
I +V + A P
Sbjct: 300 SHEILGHEVAIDTAAP 315
>gi|1362732|pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 92 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 151
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 152 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 207
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 208 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQ 259
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G V D I P R F F+ F+ + ++
Sbjct: 89 AGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVL 148
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 149 EQKEHRLDGRLIDPKKAMAMKKDPVKKI 176
>gi|427777737|gb|JAA54320.1| Putative glycine rich protein [Rhipicephalus pulchellus]
Length = 355
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 15/166 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W + DL+EYF +FG + N+K D TG+S+GFGF+ F++ + A++A+LK
Sbjct: 63 LFVGGISWDTDNKDLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFNAKD-AIEAVLKA 121
Query: 166 --HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H + + D P+ K P K+FVG L D+ E+D++ +FE +G V +V +P
Sbjct: 122 TPHTVKGKQID---PKPAKA---RPGIKKIFVGGLESDMPEADIKAYFEKFGPVENVELP 175
Query: 224 -----KPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
R+FAFVTFE DSV I +K+ + +ATPK
Sbjct: 176 FDKAKNQRRQFAFVTFEREDSVELVCREPKQKIGNKECDIKKATPK 221
>gi|171846711|gb|AAI61598.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 280
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 95 PDNSGPV-QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
PD S P+ + + V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F
Sbjct: 9 PDISSPLTEGVKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFK 68
Query: 154 SHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
S K + K+H++ R+ D P+ ++P+ K+FVG L P+ E +RE+FE
Sbjct: 69 DAASVDKVLEQKEHRLDGRLID---PKKAMAMKKDPI-KKIFVGGLNPEAGEDKIREYFE 124
Query: 213 YYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + + +P R F F+TF E + V K L + N+ K + A PK+
Sbjct: 125 TFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEKKFHNVSGSKFEIKIAQPKE 182
>gi|410948034|ref|XP_003980746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Felis
catus]
Length = 300
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 16/199 (8%)
Query: 84 NSSATQSKRSYPDNSGPVQ-----NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
+S Q+ R+ P G + T + V G+ W + DLK+YF +FG + +K+D
Sbjct: 13 SSYCCQACRTIPRPRGDARVERERRTKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 72
Query: 139 KNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGS 197
NTGRS+GFGFI F S K + K+H++ R+ D P+ ++PV K+FVG
Sbjct: 73 PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID---PKKAMAMKKDPV-KKIFVGG 128
Query: 198 LTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIK 251
L P+ TE +RE+F +G + + +P R F F+TF E + V K L + I
Sbjct: 129 LNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTIS 188
Query: 252 DKKVVVMEATPKKKMNERQ 270
K + A PK+ ++Q
Sbjct: 189 GSKCEIKVAQPKEVYQQQQ 207
>gi|384254104|gb|EIE27578.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 412
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V++ LV+LG+PW T+ L+++F QFG L+ + D+ TG+S+GFGF+ F A
Sbjct: 45 VESRKLVILGLPWDTTEASLEQHFSQFGPLQEVVIMKDRTTGKSRGFGFVTFFRAMDASC 104
Query: 161 AMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
A ++H + R C+ + +P G P +++FV + + ++ R++FE YG+V
Sbjct: 105 AASQEHVVDGRRCEAKYALPRG---GGPAPRTTRIFVARIPLSVNDAQFRQYFEQYGSVQ 161
Query: 219 DVLIPK-----PFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
D +PK R FVTF DSV + H ++ +++ + ATPK K ++ N
Sbjct: 162 DAYMPKDATKQSHRGIGFVTFANADSVEAVMSSPH-SMNGQELAIDRATPKDKPSDSAGN 220
Query: 273 RNN 275
N
Sbjct: 221 DFN 223
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK------PFREFAFVTFELDSVAKSL-- 243
++FVG L + TE+D++E+F +G V+DV +P+ R F FVTFE D +
Sbjct: 288 RIFVGKLNKETTENDVKEYFTRFGYVMDVYLPRDKVNRSEHRGFGFVTFETDGAVLRIHA 347
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDN 272
GQH IK V + A P+++ R D+
Sbjct: 348 HGQH-QIKGSVVAIDSAVPRREEGTRTDD 375
>gi|67900918|ref|XP_680715.1| hypothetical protein AN7446.2 [Aspergillus nidulans FGSC A4]
gi|40742836|gb|EAA62026.1| hypothetical protein AN7446.2 [Aspergillus nidulans FGSC A4]
Length = 448
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D ++ F +G V+D +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMID 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+P R F FVTF+ ++ ++ + + + I K + V +A P+
Sbjct: 118 KDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKTIEVKKAQPR 160
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 81 KTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 140
Query: 162 MLKKHKIGNRICDVR 176
+ + +I + +V+
Sbjct: 141 LSRPLEILGKTIEVK 155
>gi|116197887|ref|XP_001224755.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
gi|88178378|gb|EAQ85846.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
Length = 886
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 13/199 (6%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
D S + + + + DN G +NT + + G+ W TD L++YF QFG + V D
Sbjct: 366 DVSQHKTMENTTPDHGDNFG--ENTRKMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRD 423
Query: 139 KNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
TGRS+GFGF+ F ++ M+K+H + +I D P+ E+ SK+FVG +
Sbjct: 424 GATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIID---PKRAIPRDEQEKTSKIFVGGV 480
Query: 199 TPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKD 252
+ + T+ + RE+F +G VVD + +P R F FVTFE ++ + + + I
Sbjct: 481 SQETTDHEFREYFAQFGRVVDATLMMDKDTGRP-RGFGFVTFESEAGVDACLATPLEIHG 539
Query: 253 KKVVVMEATPKKKMNERQD 271
K + V +A P+ + + +D
Sbjct: 540 KPIEVKKAQPRGNLRDEED 558
>gi|334310867|ref|XP_001381121.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Monodelphis domestica]
Length = 376
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 99 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKESASVDKVLDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 159 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEDKIREYFGDFGEIESIELPM 214
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 215 DPKTNKRRGFVFITFKEEDPVKKILEKKFHNVGGSKCEIKVAQPKEVYQQQQ 266
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + ++
Sbjct: 96 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKESASVDKVL 155
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 156 DQKEHRLDGRVI----DPKKAMAMKKD 178
>gi|317027293|ref|XP_001400598.2| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus niger CBS
513.88]
Length = 561
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 14/182 (7%)
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
S P +G ++ + + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F
Sbjct: 97 SEPRGTGIKEDGKMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTF 156
Query: 153 SSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
++ M+K+H + +I D + IP E+ SK+FVG ++ + E D +E
Sbjct: 157 RDPKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEHDFKEF 211
Query: 211 FEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
F +G V+D + +P R F FVTF+ ++ ++ + + I K + V +A P+
Sbjct: 212 FAQFGRVIDATLMIDKDTGRP-RGFGFVTFDSEAAVEAALSGPLEICGKPIEVKKAQPRG 270
Query: 265 KM 266
+
Sbjct: 271 NL 272
>gi|108744009|gb|ABG02277.1| heterogeneous nuclear ribonucleoprotein A/B [Haplochromis burtoni]
Length = 316
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGF+ F S K + K
Sbjct: 58 MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVDKVLEQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 118 EHRLDGRNID---PKRAMAMKKDPV-KKIFVGGLNPEATEETIREYFGAFGEIETIELPI 173
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
K R F F+T+ E SV K L ++ NI+ + + A PK+ ++Q
Sbjct: 174 DPKSKKRRGFIFITYKEETSVKKCLEKKYHNIQGGRCELKIAQPKEVYQQQQ 225
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+FVG L+ D ++ DL+++F +G V D I R F FV F+ +
Sbjct: 52 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVD 111
Query: 242 SLIGQHV------NIKDKKVVVMEATPKKKM 266
++ Q NI K+ + M+ P KK+
Sbjct: 112 KVLEQKEHRLDGRNIDPKRAMAMKKDPVKKI 142
>gi|350635265|gb|EHA23627.1| hypothetical protein ASPNIDRAFT_52492 [Aspergillus niger ATCC 1015]
Length = 580
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 14/182 (7%)
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
S P +G ++ + + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F
Sbjct: 97 SEPRGTGIKEDGKMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTF 156
Query: 153 SSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
++ M+K+H + +I D + IP E+ SK+FVG ++ + E D +E
Sbjct: 157 RDPKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEHDFKEF 211
Query: 211 FEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
F +G V+D + +P R F FVTF+ ++ ++ + + I K + V +A P+
Sbjct: 212 FAQFGRVIDATLMIDKDTGRP-RGFGFVTFDSEAAVEAALSGPLEICGKPIEVKKAQPRG 270
Query: 265 KM 266
+
Sbjct: 271 NL 272
>gi|242765445|ref|XP_002340976.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces
stipitatus ATCC 10500]
gi|218724172|gb|EED23589.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces
stipitatus ATCC 10500]
Length = 544
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 114 MFIGGLNWETTDQSLKDYFSQFGEVSECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 173
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 174 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLM 228
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 229 IDKDTGRP-RGFGFVTFDSEAAVEATLSRPLEILGKSIEVKKAQPRGNL 276
>gi|212723574|ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea mays]
gi|194692652|gb|ACF80410.1| unknown [Zea mays]
gi|194701144|gb|ACF84656.1| unknown [Zea mays]
gi|224032577|gb|ACN35364.1| unknown [Zea mays]
gi|413951337|gb|AFW83986.1| heterogeneous nuclear ribonucleoprotein 27C isoform 1 [Zea mays]
gi|413951338|gb|AFW83987.1| heterogeneous nuclear ribonucleoprotein 27C isoform 2 [Zea mays]
gi|413951339|gb|AFW83988.1| heterogeneous nuclear ribonucleoprotein 27C isoform 3 [Zea mays]
gi|413951340|gb|AFW83989.1| heterogeneous nuclear ribonucleoprotein 27C isoform 4 [Zea mays]
gi|413951341|gb|AFW83990.1| heterogeneous nuclear ribonucleoprotein 27C isoform 5 [Zea mays]
Length = 360
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ F+S + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMAKFGPLDDCVVMKERSSGRSRGFGYVTFASADDAKNVLD 62
Query: 164 KKHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
+H +G+R +V++ P+ A+++FV + + ES R HFE +G ++D+
Sbjct: 63 CEHVLGSRTLEVKVATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAFGEILDLY 122
Query: 222 IPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+PK R F+TF+ +++ + + VVV ATPK
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPK 169
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ G + T + V IP + ++ + +FE FG + + + + +G GFI F S E
Sbjct: 85 SQGSKKATRIFVARIPQSVDESMFRRHFEAFGEILDLYMPKEHGSKGHRGIGFITFQSAE 144
Query: 157 SALKAMLKKHKI-GNRIC---------DVRIPESTK------------------------ 182
S M + H++ G + DVR P S
Sbjct: 145 SVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGGYGAYNAYISAATRYATLGAP 204
Query: 183 --------------IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK---- 224
G + V K+FVG L + DLR++F +G +VD IPK
Sbjct: 205 TLYDHPGSAYGRGYYGPSQAVGKKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPKDPKR 264
Query: 225 -PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF D VA+ + + I +V + A P
Sbjct: 265 SGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAP 303
>gi|70989777|ref|XP_749738.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
gi|66847369|gb|EAL87700.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
Length = 608
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+A + P +G ++ + + G+ W TD L++YF QFG ++ V D TGRS+
Sbjct: 87 TAAPTTEQEPQGTGIKEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSR 146
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F ++ M+K+H + +I D + IP E+ SK+FVG ++ + T
Sbjct: 147 GFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEAT 201
Query: 204 ESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVV 257
E + +E F +G V+D + +P R F FVTF+ ++ ++ + + + I K + V
Sbjct: 202 EQEFKEFFTQFGRVIDATLMIDKDTGRP-RGFGFVTFDSEAAVEAALSRPLAICGKPIEV 260
Query: 258 MEATPKKKM 266
+A P+ +
Sbjct: 261 KKAQPRGNL 269
>gi|346466281|gb|AEO32985.1| hypothetical protein [Amblyomma maculatum]
Length = 321
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+ GN ++ ++ D L V GI W + DL+EYF +FG + N+K D
Sbjct: 8 EGEGNGQTNEATQNGSDGKTNEDERKLFVGGISWDTDNKDLREYFSKFGVVVDVNIKTDP 67
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVRIPESTKIGTEEPVASKVFVGS 197
TG+S+GFGF+ F++ + A++A+LK H + + D P+ K P K+FVG
Sbjct: 68 TTGKSRGFGFVTFNAKD-AIEAVLKATPHTVKGKQID---PKPAKA---RPGIKKIFVGG 120
Query: 198 LTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFEL-DSVAKSLIGQHVNIK 251
L D+ E+D++ +FE +G V +V +P R+FAFVTFE DSV I
Sbjct: 121 LESDMPEADIKAYFEKFGPVENVELPFDKAKNQRRQFAFVTFEREDSVDLVCREPKQKIG 180
Query: 252 DKKVVVMEATPK 263
+K+ + +ATPK
Sbjct: 181 NKECDIKKATPK 192
>gi|159129147|gb|EDP54261.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
A1163]
Length = 608
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+A + P +G ++ + + G+ W TD L++YF QFG ++ V D TGRS+
Sbjct: 87 TAAPTTEQEPQGTGIKEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSR 146
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F ++ M+K+H + +I D + IP E+ SK+FVG ++ + T
Sbjct: 147 GFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEAT 201
Query: 204 ESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVV 257
E + +E F +G V+D + +P R F FVTF+ ++ ++ + + + I K + V
Sbjct: 202 EQEFKEFFTQFGRVIDATLMIDKDTGRP-RGFGFVTFDSEAAVEAALSRPLAICGKPIEV 260
Query: 258 MEATPKKKM 266
+A P+ +
Sbjct: 261 KKAQPRGNL 269
>gi|47214361|emb|CAG01206.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 12/187 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFNKFGDVTDCTIKMDQGTGRSRGFGFILFKDPASVEKVLEQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ R+ D P+ +EPV KVFVG L PD ++ ++E+FE +G + ++ +P+
Sbjct: 62 EHKLDGRVID---PKRALAMKKEPV-KKVFVGGLNPDTSKEVIQEYFEEFGEIENIELPQ 117
Query: 225 -----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
R F F+T+ E V K+L + + K + A PK+ ++Q ++
Sbjct: 118 DPKTEKRRGFVFITYKEEACVKKALENKFHTVGGSKCEIKIAQPKEVYQQQQYGNRSYGG 177
Query: 279 RNDRSRS 285
RN R+R
Sbjct: 178 RN-RTRG 183
>gi|367025853|ref|XP_003662211.1| hypothetical protein MYCTH_2302558 [Myceliophthora thermophila ATCC
42464]
gi|347009479|gb|AEO56966.1| hypothetical protein MYCTH_2302558 [Myceliophthora thermophila ATCC
42464]
Length = 501
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTFE ++ ++ + ++ I K + V +A P+ + + D
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVEACLAANLEIHGKPIEVKKAQPRGNLRDDDD 168
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH---ESA 158
+ + + V G+ TD++ +EYF QFG + A + +DK+TGR +GFGF+ F S E+
Sbjct: 81 KTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEAC 140
Query: 159 LKAMLKKH 166
L A L+ H
Sbjct: 141 LAANLEIH 148
>gi|426232266|ref|XP_004010154.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Ovis aries]
Length = 421
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 23/233 (9%)
Query: 41 SAIGLKYKVESRYRAVKLADGHLYAPLDGWQDR--VYYCTFDASGNSSATQSKRSYPDNS 98
S GL+ + R + A HL+ L W R V Y + + +S A ++R
Sbjct: 109 STSGLQTALPPSRRVILTA--HLFRALGYWIPRLLVKYHSNSSPRHSEAATAQR------ 160
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
+ + + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES
Sbjct: 161 ---EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 217
Query: 159 LKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
K M K+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V
Sbjct: 218 DKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEV 274
Query: 218 VDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +P R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 275 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 327
>gi|440632909|gb|ELR02828.1| hypothetical protein GMDG_05764 [Geomyces destructans 20631-21]
Length = 544
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 85 SSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
S+ Q +R D GP D + + G+ W TD LK+YF QFG + V D +G
Sbjct: 84 SAPAQQER---DAQGPGIKEDGKMFIGGLNWETTDQSLKDYFSQFGEVVECTVMRDGASG 140
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
RS+GFGF+ F + M+K+H + +I D P+ E+ SK+FVG ++ +
Sbjct: 141 RSRGFGFLTFKDARTVNVVMVKEHYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQEA 197
Query: 203 TESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
+E D +E+F +G VVD + +P R F FVTF+ ++ + I + I K +
Sbjct: 198 SELDFKEYFMQFGRVVDATLMMDKDTGRP-RGFGFVTFDSEAAVDACINIPLEILGKPIE 256
Query: 257 VMEATPKKKMNERQD 271
V +A P+ + E +D
Sbjct: 257 VKKAQPRGNVREEED 271
>gi|417409049|gb|JAA51051.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 252
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + NDLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 39 MFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 98
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ +EPV K+FVG L P+ TE ++RE+F +G + + +P
Sbjct: 99 EHRLDGRVID---PKKAMAMKKEPV-KKIFVGGLNPEATEEEIREYFGEFGEIEAIDLPM 154
Query: 224 ----KPFREFAFVTF--ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K+L + I K + A P+K
Sbjct: 155 DPKSHKRRGFVFITFKEEEEPVRKALEKKFHTIGASKCEIKVALPRK 201
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D +++DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 36 AGKMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 95
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 96 DQKEHRLDGRVIDPKKAMAMKKEPVKKI 123
>gi|327265526|ref|XP_003217559.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Anolis
carolinensis]
Length = 367
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 114 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEAASVDKVLEQK 173
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ R+ D P+ ++PV K+FVG L P+ E +RE+F +G + + +P
Sbjct: 174 EHKLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEAAEEKIREYFGEFGEIEAIELPM 229
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E D V K L + N+ K + A PK+
Sbjct: 230 DPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKVAQPKE 275
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G V D I P R F F+ F+ + ++
Sbjct: 111 AGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEAASVDKVL 170
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 171 EQKEHKLDGRVI----DPKKAMAMKKD 193
>gi|378734179|gb|EHY60638.1| hypothetical protein HMPREF1120_08590 [Exophiala dermatitidis
NIH/UT8656]
Length = 455
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L +YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLHDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ +K+FVG ++ D TE D F +G V+D +
Sbjct: 61 HFLDGKIID---PKRAIPRDEQEKTAKIFVGGVSQDATEEDFESFFAQFGRVIDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPKKKMNE 268
+P R F FVTF+ D+ + + H + I K + V A P+ KM E
Sbjct: 118 KDTGRP-RGFGFVTFDSDAAVERCLEYHPLEILGKPIEVKRAQPRGKMGE 166
>gi|167999759|ref|XP_001752584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696115|gb|EDQ82455.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 380
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L VLGIPW L++Y +FG L+ V D+ TGRS+GFG++ F++ E A K + +
Sbjct: 1 LQVLGIPWDVDTEGLRQYMLKFGELDDVIVMKDRGTGRSRGFGYVTFATVEDAKKTVSTQ 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASK---VFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H + R+ +V++ +T +P A K VFV + P +T+ R +FE YG + D +
Sbjct: 61 HSLNGRMLEVKV--ATPKEEMKPPAKKITRVFVARIPPSVTDEAFRSYFEKYGTLTDAYM 118
Query: 223 P-----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
P K R FVTFE+ L+ + + + V ATPK+
Sbjct: 119 PKDQGSKAHRGIGFVTFEIPESVDRLMNETHELGGSTIAVDRATPKE 165
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 178 PESTKIGTEEP-------VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----P 225
P S G+ P + +K+FVG L P+ DLR +F +G + DV +PK
Sbjct: 216 PVSGSFGSGGPPVPPLRGLGTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKDAKKTS 275
Query: 226 FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
R F FVTF + A+ + ++ I ++ V A P+ ++
Sbjct: 276 HRGFGFVTFSDEGAAERVALRNHEILGHQIAVDRAAPQDEV 316
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + TD + YFE++GTL A + D+ + +G GF+ F ES + M
Sbjct: 87 TRVFVARIPPSVTDEAFRSYFEKYGTLTDAYMPKDQGSKAHRGIGFVTFEIPESVDRLMN 146
Query: 164 KKHKIGNRICDV 175
+ H++G V
Sbjct: 147 ETHELGGSTIAV 158
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
T + V +P DL+ YF FG + V D +GFGF+ FS +A +
Sbjct: 235 GTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKDAKKTSHRGFGFVTFSDEGAAERVA 294
Query: 163 LKKHKI-GNRIC 173
L+ H+I G++I
Sbjct: 295 LRNHEILGHQIA 306
>gi|45384514|ref|NP_990659.1| heterogeneous nuclear ribonucleoprotein A/B [Gallus gallus]
gi|515838|emb|CAA56586.1| single stranded D box binding factor [Gallus gallus]
Length = 302
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 92 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 151
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 152 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 207
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 208 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQ 259
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G V D I P R F F+ F+ + ++
Sbjct: 89 AGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVL 148
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 149 EQKEHRLDGRLIDPKKAMAMKKDPVKKI 176
>gi|361131862|gb|EHL03497.1| putative Uncharacterized RNA-binding protein [Glarea lozoyensis
74030]
Length = 467
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F + M+K+
Sbjct: 1 MFIGGLNWETTDESLKEYFSQFGEVLECTVMRDGASGRSRGFGFLTFKDARTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D +++F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQERTSKIFVGGVSQEATEQDFKQYFMQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTF+ ++ ++ + + I K + V +A P+ M E ++
Sbjct: 118 KDTGRP-RGFGFVTFDSEAAVEACLEGPLEILGKPIEVKKAQPRGNMREEEE 168
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K+YF QFG + A + +DK+TGR +GFGF+ F S E+A++A
Sbjct: 81 RTSKIFVGGVSQEATEQDFKQYFMQFGRVVDATLMMDKDTGRPRGFGFVTFDS-EAAVEA 139
Query: 162 MLK 164
L+
Sbjct: 140 CLE 142
>gi|357122209|ref|XP_003562808.1| PREDICTED: uncharacterized protein LOC100836006 [Brachypodium
distachyon]
Length = 472
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W + L+EYF +FG + A + D+NTGR++GFGFI F+ A + + K
Sbjct: 8 LFVGGISWETDEERLREYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEPGVAERVTMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ PV + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 QFGMITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S A+++ S + GPV+ + V G+ T+ + + YFEQFG + V D NT R
Sbjct: 87 SIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRP 146
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G PVA
Sbjct: 147 RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPG---PVA 192
>gi|171694297|ref|XP_001912073.1| hypothetical protein [Podospora anserina S mat+]
gi|170947097|emb|CAP73902.1| unnamed protein product [Podospora anserina S mat+]
Length = 513
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P+ + + G+ W TD L++YF FG + V D TGRS+GFGF+ F ++
Sbjct: 10 PLYFRKMFIGGLNWETTDQSLRDYFSTFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVN 69
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
M+K+H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD
Sbjct: 70 IVMVKEHYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVD 126
Query: 220 VLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
+ +P R F FVTFE ++ ++ + ++ I K + V +A P+ + E ++N
Sbjct: 127 ATLMMDKDTGRP-RGFGFVTFESEAGVEACLSANLEIHGKPIEVKKAQPRGNLREEEEN 184
>gi|146260280|ref|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B isoform 1 [Mus
musculus]
gi|89275690|gb|ABD66224.1| S1 protein C2 [Mus musculus]
gi|148701714|gb|EDL33661.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Mus
musculus]
Length = 332
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|410292486|gb|JAA24843.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 355
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQH 247
FVG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
Query: 248 VNIKDKKVVVMEATPKK 264
N+ K + A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
>gi|417399538|gb|JAA46770.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1 [Desmodus
rotundus]
Length = 354
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDKTNKRRGFCFITFKEEEPVKKIM 239
>gi|74225210|dbj|BAE38291.1| unnamed protein product [Mus musculus]
Length = 325
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 129
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 130 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 185
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 186 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 237
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 67 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 126
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 127 DQKEHRLDGRVI----DPKKAMAMKKD 149
>gi|293334069|ref|NP_001168848.1| uncharacterized protein LOC100382653 [Zea mays]
gi|392351175|ref|XP_003750865.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
2 [Rattus norvegicus]
gi|6562845|emb|CAB62553.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|149052496|gb|EDM04313.1| rCG34663, isoform CRA_a [Rattus norvegicus]
gi|223973327|gb|ACN30851.1| unknown [Zea mays]
Length = 332
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|326479392|gb|EGE03402.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton equinum
CBS 127.97]
Length = 493
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I P+ E+ SK+FVG ++ + TE + ++ F +G VVD +
Sbjct: 61 HYLDGKILYKIDPKRAIPRDEQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMID 120
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR- 278
+P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R R
Sbjct: 121 KDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRLGKRG 179
Query: 279 -RNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
R+DR + R G +G N Q Q
Sbjct: 180 FRDDR----FKDDRGSGSDSGQQSNTQNQ 204
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 86 SKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEATL 144
>gi|14110420|ref|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
gi|386782249|ref|NP_001247736.1| heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|114594005|ref|XP_001143807.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pan troglodytes]
gi|297673867|ref|XP_002814969.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Pongo abelii]
gi|402869391|ref|XP_003898746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Papio anubis]
gi|13124489|sp|Q14103.1|HNRPD_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|870749|dbj|BAA09525.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815612|gb|AAC23474.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|12803191|gb|AAH02401.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|63990762|gb|AAY40913.1| unknown [Homo sapiens]
gi|119626280|gb|EAX05875.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|119626281|gb|EAX05876.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|123982850|gb|ABM83166.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|123997529|gb|ABM86366.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|355687289|gb|EHH25873.1| Heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|380783619|gb|AFE63685.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|383417965|gb|AFH32196.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|384940052|gb|AFI33631.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|410351149|gb|JAA42178.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 356
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 69 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 128
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 129 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 185
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 186 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 241
>gi|397524667|ref|XP_003832310.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Pan paniscus]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|148878011|gb|AAI46039.1| HNRNPD protein [Bos taurus]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQH 247
FVG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
Query: 248 VNIKDKKVVVMEATPKK 264
N+ K + A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
>gi|395505200|ref|XP_003756932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Sarcophilus
harrisii]
Length = 278
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKESASVDKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEDKIREYFGDFGEIESIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 117 DPKTNKRRGFVFITFKEEDPVKKILEKKFHNVGGSKCEIKVAQPKEVYQQQQ 168
>gi|432884676|ref|XP_004074535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Oryzias
latipes]
Length = 314
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 58 MFVGGLSWDTTKKDLKDYFAKFGEVVDCTLKLDPMTGRSRGFGFVLFKDAESVEKVASQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K ++EPV KVFVG L+PD E +RE+F +G V + +P
Sbjct: 118 EHKLNGKVIDPKKAKAMK--SKEPV-KKVFVGGLSPDTPEEKVREYFGAFGEVESIELPM 174
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E ++V K + ++ NI K V A K+
Sbjct: 175 ENKTNKRRGFCFITFKEEEAVKKVMEKKYHNIGLSKCEVKVALSKE 220
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFVTFELDSVAKSLIGQ 246
K+FVG L+ D T+ DL+++F +G VVD + P R F FV F+ + + Q
Sbjct: 57 KMFVGGLSWDTTKKDLKDYFAKFGEVVDCTLKLDPMTGRSRGFGFVLFKDAESVEKVASQ 116
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
+ + KV+ + K M ++ + F +P R+Y G G ++ +
Sbjct: 117 KEHKLNGKVI--DPKKAKAMKSKEPVKKVF-VGGLSPDTPEEKVREYFGAFGEVESIELP 173
Query: 307 QGGYNNKRR 315
NKRR
Sbjct: 174 MENKTNKRR 182
>gi|3377279|dbj|BAA32032.1| AlF-C1 [Rattus norvegicus]
Length = 331
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 76 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 135
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 136 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 191
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 192 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 243
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 73 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 132
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 133 DQKEHRLDGRVI----DPKKAMAMKKD 155
>gi|326494758|dbj|BAJ94498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 494
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L++YF +FG + A + D+NTGR++GFGFI F+ A + + K
Sbjct: 31 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 90
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ PV + K+FVG L ++TE + R +FE
Sbjct: 91 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFE 150
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 151 QFGMITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 209
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S A+++ S + GPV+ + V G+ T+ + + YFEQFG + V D NT R
Sbjct: 110 SIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRP 169
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G PVA
Sbjct: 170 RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPG---PVA 215
>gi|326928651|ref|XP_003210489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Meleagris gallopavo]
gi|449474690|ref|XP_004175898.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
gi|449474694|ref|XP_002196057.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
Length = 262
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 117 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQ 168
>gi|209154614|gb|ACI33539.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 359
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F + S K + K
Sbjct: 75 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFQTAASVDKVLEQK 134
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D P+ +EP A K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 135 EHRLDGRQID---PKKAMAMKKEP-AKKIFVGGLNPEATEETIREYFGTFGEIESIELPV 190
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
K R F F+TF+ +S K +
Sbjct: 191 DPKFKKRRGFIFITFKEESTVKKCL 215
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G V D I R F F+ F+ + ++
Sbjct: 72 AGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFQTAASVDKVL 131
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 132 EQKEHRLDGRQIDPKKAMAMKKEPAKKI 159
>gi|74001715|ref|XP_857957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 11
[Canis lupus familiaris]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|395834193|ref|XP_003790096.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Otolemur garnettii]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|327273004|ref|XP_003221273.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Anolis
carolinensis]
Length = 334
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 9/148 (6%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N + + G+ W T DLK+YF +FG + +K+D TGRS+GFGFI F ES K M
Sbjct: 76 NGKMFIGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFILFKEAESVDKVM 135
Query: 163 -LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
K+HK+ ++ D + ++ K T+EP+ K+FVG L+PD E +RE+F +G V +
Sbjct: 136 DQKEHKLNGKVIDPKRAKAMK--TKEPI-KKIFVGGLSPDTPEEKIREYFGGFGEVESIE 192
Query: 222 IP-----KPFREFAFVTFELDSVAKSLI 244
+P R F F+TF+ + K ++
Sbjct: 193 LPMDNKTNKRRGFCFITFKDEEPVKKIM 220
>gi|355765936|gb|EHH62474.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Macaca
fascicularis]
Length = 302
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 15 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 74
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 75 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 131
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 132 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 187
>gi|332233349|ref|XP_003265864.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Nomascus leucogenys]
Length = 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|326525423|dbj|BAJ88758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L++YF +FG + A + D+NTGR++GFGFI F+ A + + K
Sbjct: 8 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ PV + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 QFGMITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S A+++ S + GPV+ + V G+ T+ + + YFEQFG + V D NT R
Sbjct: 87 SIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRP 146
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G PVA
Sbjct: 147 RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPG---PVA 192
>gi|183178938|gb|ACC43947.1| TAR protein [Philodina roseola]
Length = 196
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 8 YIYVTNNLEEDG--MEIPSED--DGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADG 61
+I V + +D +EIP + D + LSTL AQ+ LKY+ S +R V++ DG
Sbjct: 2 FIRVVDESTDDNEIVEIPLDGGADAFLSLSTLAAQFQGVTALKYRHPETSVWRGVRVVDG 61
Query: 62 HLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNT----------------- 104
LY P W + Y T S +S KR N Q +
Sbjct: 62 KLYHPDGRWDPDMVYVTV-YSKSSPTIDVKRKGDQNDEFAQESIGEIKEECENDPNRRCV 120
Query: 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164
DL+VLGI + + D+K+ FE FG L F +K D N G+S+GFGFIRF ++ES L + K
Sbjct: 121 DLIVLGISYRSLEADVKKCFEAFGELIFCEIKRDAN-GQSRGFGFIRFKNYESQLAVINK 179
Query: 165 KHKIGNRICDVRIPES 180
+H I R DV+IP+S
Sbjct: 180 RHFIDGRHVDVKIPDS 195
>gi|410957357|ref|XP_003985295.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Felis catus]
Length = 290
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 3 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 62
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 63 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 119
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 120 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 175
>gi|148905888|gb|ABR16106.1| unknown [Picea sitchensis]
Length = 409
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 10/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L++Y +FG L+ V D+ TGRS+GFG+ FSS E A KA+ +
Sbjct: 8 LVVLGIPWDVDTEGLQDYMGKFGELDDVIVMRDRATGRSRGFGYATFSSVEDAKKALDSE 67
Query: 166 HKIGNRICDVRIP---ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H + R +V++ E K +++ +++FV + P +TE R++FE +G + D+ +
Sbjct: 68 HFLNGRALEVKVATPKEEMKAPSKK--ITRIFVARIPPSVTEDAFRKYFEEFGNIEDLYM 125
Query: 223 PKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
PK R F+TFE L+ + + + V ATPK++
Sbjct: 126 PKEKGSKGHRGIGFITFESSGSVDRLMSETHMLGGATIAVDRATPKEE 173
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSL 243
+ K+FVG L+ + T DLR +F +G VVDV +PK R F FVTF D VA +
Sbjct: 269 MGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAEDGVADRV 328
Query: 244 IGQHVNIKDKKVVVMEATP 262
+ I ++V + ATP
Sbjct: 329 SRRSHEILGQQVAIDSATP 347
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + T++ ++YFE+FG +E + +K + +G GFI F S S + M
Sbjct: 94 TRIFVARIPPSVTEDAFRKYFEEFGNIEDLYMPKEKGSKGHRGIGFITFESSGSVDRLMS 153
Query: 164 KKHKIGNRICDV 175
+ H +G V
Sbjct: 154 ETHMLGGATIAV 165
>gi|449267179|gb|EMC78145.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Columba
livia]
Length = 263
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + N+ K + A PK+ ++Q
Sbjct: 118 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQ 169
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQ 246
K+FVG L+ D ++ DL+++F +G V D I P R F F+ F+ + ++ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 247 HVN------IKDKKVVVMEATPKKKM 266
+ I KK + M+ P KK+
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKI 86
>gi|127138710|ref|NP_077380.2| heterogeneous nuclear ribonucleoprotein D0 isoform a [Rattus
norvegicus]
gi|149046816|gb|EDL99590.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Rattus
norvegicus]
Length = 353
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 157 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 213
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 214 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
>gi|410292490|gb|JAA24845.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 336
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|334330945|ref|XP_001364005.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Monodelphis domestica]
Length = 376
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 89 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 148
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 149 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 205
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 206 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 261
>gi|367038869|ref|XP_003649815.1| hypothetical protein THITE_2108809 [Thielavia terrestris NRRL 8126]
gi|346997076|gb|AEO63479.1| hypothetical protein THITE_2108809 [Thielavia terrestris NRRL 8126]
Length = 606
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 124 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVKE 183
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 184 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 240
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTFE ++ ++ + + I K + V +A P+ + + D
Sbjct: 241 KDTGRP-RGFGFVTFESEAGVEACLAAKLEIHGKPIEVKKAQPRGNLRDDDD 291
>gi|2773158|gb|AAB96683.1| heterogeneous nuclear ribonucleoprotein D0B [Homo sapiens]
Length = 298
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 60 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 119
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 120 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 176
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 177 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 232
>gi|417410217|gb|JAA51585.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 379
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 13/196 (6%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 142 IDASKNEEDEGHSNSSPRHSEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 201
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 202 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 258
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP----KPFREFAFVTF-ELDSVAKSLIGQHV 248
FVG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 259 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDKTNKRRGFCFITFKEEEPVKKIMEKKYH 318
Query: 249 NIKDKKVVVMEATPKK 264
N+ K + A K+
Sbjct: 319 NVGLSKCEIKVAMSKE 334
>gi|116256512|ref|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Mus musculus]
gi|33516945|sp|Q60668.2|HNRPD_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|148688367|gb|EDL20314.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Mus
musculus]
Length = 355
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|440474936|gb|ELQ43651.1| heterogeneous nuclear ribonucleoprotein A/B [Magnaporthe oryzae
Y34]
gi|440479945|gb|ELQ60674.1| heterogeneous nuclear ribonucleoprotein A/B [Magnaporthe oryzae
P131]
Length = 632
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 15/184 (8%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V+ + + + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++
Sbjct: 180 VEFSKMFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPKTVNI 239
Query: 161 AMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
M+K+H + +I D + IP E+ SK+FVG ++ + T+ + ++ F +G VV
Sbjct: 240 VMVKEHYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVV 294
Query: 219 DVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD- 271
D + +P R F FVTFE ++ ++ + + + I K + V +A P+ + E ++
Sbjct: 295 DATLMMDKDTGRP-RGFGFVTFESEAGVEACLARDLEIHGKLIEVKKAQPRGNLREEEEA 353
Query: 272 NRNN 275
NR N
Sbjct: 354 NRRN 357
>gi|261194978|ref|XP_002623893.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis SLH14081]
gi|239587765|gb|EEQ70408.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis SLH14081]
gi|239610740|gb|EEQ87727.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis ER-3]
gi|327348818|gb|EGE77675.1| hypothetical protein BDDG_00612 [Ajellomyces dermatitidis ATCC
18188]
Length = 530
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 14/166 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+P R F FVTF+ ++ ++ + + I K + V +A P+
Sbjct: 116 IDKDSGRP-RGFGFVTFDSEAAVEATLSGPLEILGKPIEVKKAQPR 160
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ D K++F QFG + A + +DK++GR +GFGF+ F S E+A++A L
Sbjct: 83 SKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMIDKDSGRPRGFGFVTFDS-EAAVEATL 141
>gi|211826253|gb|AAH11172.2| Hnrnpd protein [Mus musculus]
Length = 351
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 95 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 154
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 155 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 211
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 212 DNKTNKRRGFCFITFKEEEPVKKIM 236
>gi|195624050|gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
gi|195644612|gb|ACG41774.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
Length = 360
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ F+S + A + +
Sbjct: 5 LVVLGIPWDVDTEGLREYMAKFGPLDDCVVMKERSSGRSRGFGYVTFASADDAKNVLDCE 64
Query: 166 HKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +G+R +V++ P+ A+++FV + + ES R HFE +G ++D+ +P
Sbjct: 65 HVLGSRTLEVKVATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAFGEILDLYMP 124
Query: 224 KP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
K R F+TF+ +++ + + VVV ATPK
Sbjct: 125 KEHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPK 169
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ G + T + V IP + ++ + +FE FG + + + + +G GFI F S E
Sbjct: 85 SQGSKKATRIFVARIPQSVDESMFRRHFEAFGEILDLYMPKEHGSKGHRGIGFITFQSAE 144
Query: 157 SALKAMLKKHKI-GNRIC---------DVRIPESTK------------------------ 182
S M + H++ G + DVR P S
Sbjct: 145 SVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGGYGAYNAYISAATRYATLGAP 204
Query: 183 --------------IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK---- 224
G + V K+FVG L + DLR++F +G +VD IPK
Sbjct: 205 TLYDHPGSAYGRGYYGPSQAVGKKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPKDPKR 264
Query: 225 -PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
R F FVTF D VA+ + + I +V + A P
Sbjct: 265 SGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAP 303
>gi|13124487|sp|Q9JJ54.1|HNRPD_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|9588096|dbj|BAB03465.1| RNA binding protein p45AUF1 [Rattus norvegicus]
Length = 353
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 157 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 213
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 214 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
>gi|296196172|ref|XP_002745745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Callithrix jacchus]
Length = 325
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 69 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 128
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 129 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 185
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 186 DNKTNKRRGFCFITFKEEEPVKKIM 210
>gi|332028567|gb|EGI68604.1| RNA-binding protein squid [Acromyrmex echinatior]
Length = 316
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+E+F +G +E NVK D NTGRS+GF FI F+ ES K M
Sbjct: 46 LFVGGLSWETTDKELREHFSAYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDKIMSAG 105
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ +L++ D++ F +G +V+V +P
Sbjct: 106 DHVINNKKVD---PKKAK-----ARHGKIFVGGLSTELSDDDIKNFFSQFGTIVEVEMPF 157
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K+V V +ATPK
Sbjct: 158 DKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKATPK 202
>gi|195624752|gb|ACG34206.1| RNA-binding protein [Zea mays]
Length = 469
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D++TGR++GFGF+ F+ A + ++K
Sbjct: 10 LFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADATVAERVTIEK 69
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P ++ IG+ P + K+FVG L ++TE+D R +FE
Sbjct: 70 HMIDGRMVEAKKAVPRDDHSIVSKSNTSSIGSPGPGRTRKIFVGGLPSNVTEADFRGYFE 129
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V +A PK++
Sbjct: 130 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQ 188
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S ++S S + GP + + V G+P T+ D + YFEQFG + V D NT R
Sbjct: 89 SIVSKSNTSSIGSPGPGRTRKIFVGGLPSNVTEADFRGYFEQFGVITDVVVMYDHNTQRP 148
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G PVA
Sbjct: 149 RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQSPG---PVA 194
>gi|113931574|ref|NP_001039236.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
gi|89272441|emb|CAJ82657.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
Length = 313
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 54 MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQK 113
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++P+ K+FVG L P+ E +RE+FE +G + + +P
Sbjct: 114 EHRLDGRLID---PKKAMAMKKDPI-KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPM 169
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K L + N+ K + A PK+
Sbjct: 170 DPKTNKRRGFVFITFKEEEPVKKILEKKFHNVSGSKCEIKIAQPKE 215
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 169 GNRICDVRIPESTKIGTE-------------EPVASKVFVGSLTPDLTESDLREHFEYYG 215
G+ CD ES G + E A K+FVG L+ D ++ DL+++F +G
Sbjct: 17 GHEACDAEAAESKVPGGQNGAEGDQINASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFG 76
Query: 216 AVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQHVN------IKDKKVVVMEATPKK 264
V D I P R F F+ F+ + ++ Q + I KK + M+ P K
Sbjct: 77 EVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRLIDPKKAMAMKKDPIK 136
Query: 265 KM 266
K+
Sbjct: 137 KI 138
>gi|14110414|ref|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
gi|114594009|ref|XP_001143722.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pan troglodytes]
gi|395735083|ref|XP_003776519.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pongo abelii]
gi|402869389|ref|XP_003898745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Papio anubis]
gi|870745|dbj|BAA09523.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815613|gb|AAC23475.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|18645125|gb|AAH23977.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|19683928|gb|AAH26015.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|119626282|gb|EAX05877.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626286|gb|EAX05881.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626287|gb|EAX05882.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|208966456|dbj|BAG73242.1| heterogeneous nuclear ribonucleoprotein D [synthetic construct]
gi|380783617|gb|AFE63684.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|383417963|gb|AFH32195.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|384940050|gb|AFI33630.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|410265342|gb|JAA20637.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
gi|410292488|gb|JAA24844.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 306
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|410351151|gb|JAA42179.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 307
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 69 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 128
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 129 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 185
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 186 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 241
>gi|395834191|ref|XP_003790095.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Otolemur garnettii]
Length = 306
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|140971918|ref|NP_112620.2| heterogeneous nuclear ribonucleoprotein A/B [Rattus norvegicus]
gi|392351173|ref|XP_003750864.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
1 [Rattus norvegicus]
gi|6911221|gb|AAF31437.1|AF216753_1 CArG-binding factor A [Rattus norvegicus]
gi|6562847|emb|CAB62554.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|44890256|gb|AAH66664.1| Hnrpab protein [Rattus norvegicus]
gi|149052497|gb|EDM04314.1| rCG34663, isoform CRA_b [Rattus norvegicus]
Length = 285
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|403263352|ref|XP_003924001.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Saimiri boliviensis boliviensis]
Length = 355
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|26345118|dbj|BAC36208.1| unnamed protein product [Mus musculus]
Length = 285
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|9588098|dbj|BAB03466.1| RNA binding protein p42 AUF1 [Rattus norvegicus]
Length = 334
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 138 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 194
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 195 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 240
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 137 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 192
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 193 PMDNKTNKRR 202
>gi|453084738|gb|EMF12782.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 536
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 13/200 (6%)
Query: 78 TFDASGNSSATQSKRSYPDNS---GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
++D + + PDN G ++ + + G+ W TD LK+YF QFG +
Sbjct: 73 SYDQDMGGQQNEFREPEPDNRPLIGSKEDGKMFIGGLNWETTDQSLKDYFSQFGEVIECT 132
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
V D TGRS+GFGF+ F ++ M+K+H + ++ D P+ E+ +K+F
Sbjct: 133 VMRDGATGRSRGFGFLTFRDPKTVNTVMVKEHSLDGKLID---PKRAIPRDEQERTAKIF 189
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV 248
VG ++ D TE D F+ +G V+D + +P R F FVTF+ + + + +
Sbjct: 190 VGGVSQDATEQDFEAFFQKFGRVLDATLMMDKDTGRP-RGFGFVTFDNEMAVERTLEGPL 248
Query: 249 NIKDKKVVVMEATPKKKMNE 268
I K + V A P+ KM+E
Sbjct: 249 AILGKPIEVKRAQPRGKMDE 268
>gi|414590674|tpg|DAA41245.1| TPA: hypothetical protein ZEAMMB73_495774 [Zea mays]
Length = 470
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 20/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D+NTGR++GFGF+ F+ A + ++K
Sbjct: 8 LFVGGISWETDEDRLREYFGRFGDVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTMEK 67
Query: 166 HKIGNRICDVR--IPE---------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEY 213
H I R+ + + +P ++ IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFEQ 127
Query: 214 YGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 FGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 185
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 100 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 159
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
KA+ K H++ ++ +V+ +P+ G P+A
Sbjct: 160 DKALHKNFHELNGKMVEVKRAVPKEQSPG---PIA 191
>gi|224049399|ref|XP_002190694.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Taeniopygia guttata]
gi|449499942|ref|XP_004175399.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 318
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 62 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 121
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 122 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 178
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+TF E + V K + ++ N+ K + A K
Sbjct: 179 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 223
>gi|148230364|ref|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [Bos taurus]
gi|146231918|gb|ABQ13034.1| heterogeneous nuclear ribonucleoprotein D [Bos taurus]
gi|296486390|tpg|DAA28503.1| TPA: heterogeneous nuclear ribonucleoprotein D [Bos taurus]
Length = 306
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|74001695|ref|XP_848950.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Canis lupus familiaris]
Length = 306
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|426344801|ref|XP_004038942.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Gorilla gorilla gorilla]
Length = 291
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 35 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 94
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 95 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 151
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 152 DNKTNKRRGFCFITFKEEEPVKKIM 176
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 20 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 79
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 80 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 135
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 136 EYFGGFGEVESIELPMDNKTNKRR 159
>gi|127139089|ref|NP_001076008.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Rattus
norvegicus]
gi|149046818|gb|EDL99592.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
gi|149046819|gb|EDL99593.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
Length = 334
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 138 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 194
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 195 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 240
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 137 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 192
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 193 PMDNKTNKRR 202
>gi|119626284|gb|EAX05879.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_f [Homo sapiens]
Length = 277
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 39 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 98
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 99 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 155
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 156 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 211
>gi|417409283|gb|JAA51156.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 279
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
F + NSS S+ + + + + + G+ W T DLK+YF +FG + +K+D
Sbjct: 1 FPSHSNSSPRHSEAA----AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLD 56
Query: 139 KNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGS 197
TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+FVG
Sbjct: 57 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGG 113
Query: 198 LTPDLTESDLREHFEYYGAVVDVLIP----KPFREFAFVTFELDSVAKSLI 244
L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 114 LSPDTPEEKIREYFGGFGEVESIELPMDKTNKRRGFCFITFKEEEPVKKIM 164
>gi|395834195|ref|XP_003790097.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Otolemur garnettii]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|219363315|ref|NP_001136724.1| uncharacterized protein LOC100216861 [Zea mays]
gi|194696774|gb|ACF82471.1| unknown [Zea mays]
gi|414883906|tpg|DAA59920.1| TPA: RNA-binding protein [Zea mays]
Length = 469
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D++TGR++GFGF+ F+ A + ++K
Sbjct: 10 LFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADATVAERVTIEK 69
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P ++ IG+ P + K+FVG L ++TE+D R +FE
Sbjct: 70 HMIDGRMVEAKKAVPRDDHSIVSKSNTSSIGSPGPGRTRKIFVGGLPSNVTEADFRGYFE 129
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V +A PK++
Sbjct: 130 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQ 188
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S ++S S + GP + + V G+P T+ D + YFEQFG + V D NT R
Sbjct: 89 SIVSKSNTSSIGSPGPGRTRKIFVGGLPSNVTEADFRGYFEQFGVITDVVVMYDHNTQRP 148
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G PVA
Sbjct: 149 RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQSPG---PVA 194
>gi|14110417|ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]
gi|332819428|ref|XP_003310368.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735088|ref|XP_003776521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 4
[Pongo abelii]
gi|402869393|ref|XP_003898747.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Papio anubis]
gi|2815614|gb|AAC23476.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|119626279|gb|EAX05874.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626283|gb|EAX05878.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626288|gb|EAX05883.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|158258851|dbj|BAF85396.1| unnamed protein product [Homo sapiens]
gi|380783615|gb|AFE63683.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|383417961|gb|AFH32194.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|384940048|gb|AFI33629.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|410351153|gb|JAA42180.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 337
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 81 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 140
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 141 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 197
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 198 DNKTNKRRGFCFITFKEEEPVKKIM 222
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 80 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 139
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 140 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 195
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 196 PMDNKTNKRR 205
>gi|433344|gb|AAC50056.1| p37 AUF1 [Homo sapiens]
Length = 286
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 108/200 (54%), Gaps = 15/200 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 138 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 194
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ--DNRNNF 276
R F F+TF E + V K + ++ N+ K + A K++ ++Q +R F
Sbjct: 195 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF 254
Query: 277 DRRNDRSRSPMSNSRQYGGG 296
R+R NS + G G
Sbjct: 255 ---AGRARGEFRNSSEAGEG 271
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 137 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 192
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 193 PMDNKTNKRR 202
>gi|170051646|ref|XP_001861859.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167872815|gb|EDS36198.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 308
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
+S PV++ D L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S
Sbjct: 31 DSAPVRDDDRKLFVGGLSWETSDKELKEHFGQYGDIESINVKTDPNTGRSRGFAFIVYKS 90
Query: 155 HESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
+S K + H I N+ D P+ K K+FVG LT ++++ +++ F
Sbjct: 91 ADSIDKVVAAGDHVINNKKVD---PKKAK-----ARHGKIFVGGLTTEISDDEIKTFFGQ 142
Query: 214 YGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+G +VDV +P + F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 143 FGNIVDVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 198
>gi|6754222|ref|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B isoform 2 [Mus
musculus]
gi|729000|sp|Q99020.1|ROAA_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=CArG-binding factor-A;
Short=CBF-A
gi|220363|dbj|BAA14181.1| CArG-binding factor-A [Mus musculus]
gi|840648|gb|AAA92146.1| CArG box-binding factor [Mus musculus]
gi|12850708|dbj|BAB28821.1| unnamed protein product [Mus musculus]
gi|89275692|gb|ABD66225.1| S1 protein D2 [Mus musculus]
gi|148701716|gb|EDL33663.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_c [Mus
musculus]
Length = 285
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|27695334|gb|AAH43069.1| Hnrpab protein [Mus musculus]
Length = 311
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|291387921|ref|XP_002710458.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Oryctolagus
cuniculus]
Length = 306
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 46 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 105
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 106 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 161
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + I K + A PK+ ++Q
Sbjct: 162 DPKSNKRRGFVFITFKEEDPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 213
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 43 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL 102
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 103 DQKEHRLDGRVI----DPKKAMAMKKD 125
>gi|116256518|ref|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Mus musculus]
gi|148688364|gb|EDL20311.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Mus
musculus]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|380492932|emb|CCF34246.1| nuclear polyadenylated RNA-binding protein [Colletotrichum
higginsianum]
Length = 448
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSTGRSRGFGFLTFRDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + +++F +G VVD +
Sbjct: 61 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDQEFKDYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTFE ++ ++ + + I K + V +A P+ + E ++
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVEACLSTSLEIHGKPIEVKKAQPRGNLREEEE 168
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + + V G+ TD + K+YF QFG + A + +DK+TGR +GFGF+
Sbjct: 71 KRAIPRDE-QEKTSKIFVGGVSQETTDQEFKDYFAQFGRVVDATLMMDKDTGRPRGFGFV 129
Query: 151 RFSSH---ESALKAMLKKH 166
F S E+ L L+ H
Sbjct: 130 TFESEAGVEACLSTSLEIH 148
>gi|348535413|ref|XP_003455195.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Oreochromis niloticus]
Length = 316
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 58 MFVGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPMTGRSRGFGFVLFKEPESVDKVASQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K ++EPV K+FVG L+PD E +RE+F +G V V +P
Sbjct: 118 EHKLNGKVIDPKKAKAMK--SKEPV-KKIFVGGLSPDTPEEKVREYFGAFGEVESVELPM 174
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ NI K + A K+
Sbjct: 175 ENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEIKVAMSKE 220
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFVTF-ELDSVAK 241
K+FVG L+ D T+ DL+++F +G VVD + P R F FV F E +SV K
Sbjct: 57 KMFVGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPMTGRSRGFGFVLFKEPESVDK 112
>gi|168067843|ref|XP_001785814.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662538|gb|EDQ49378.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 382
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHK 167
VLGIPW L++Y +FG L+ V D+ TGRS+GFG++ F++ E A KA+ +H
Sbjct: 1 VLGIPWDIDTEGLRQYMLKFGELDDVIVMKDRGTGRSRGFGYVTFAAVEDAKKAVSTQHS 60
Query: 168 IGNRICDVRIPESTKIGTEEPVASK---VFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+ R+ +V++ +T +P A K VFV + P +T+ R +FE YG + D +P
Sbjct: 61 LNGRMLEVKV--ATPKEEMKPPAKKITRVFVARIPPSVTDEAFRSYFEKYGTLTDAYMPK 118
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K R FVTFE +L+ + + + V ATPK+
Sbjct: 119 DQGSKAHRGIGFVTFENPESVDNLMNETHELGGSTIAVDRATPKE 163
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDSVAKSL 243
+ +K+FVG L P+ DLR +F +G + DV +PK R F FVTF + A+ +
Sbjct: 229 LGTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKDAKKTSHRGFGFVTFSDEGAAERV 288
Query: 244 IGQHVNIKDKKVVVMEATPK 263
++ I ++ V A P+
Sbjct: 289 ALRNHEILGHQIAVDRAAPQ 308
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + TD + YFE++GTL A + D+ + +G GF+ F + ES M
Sbjct: 85 TRVFVARIPPSVTDEAFRSYFEKYGTLTDAYMPKDQGSKAHRGIGFVTFENPESVDNLMN 144
Query: 164 KKHKIGNRICDV 175
+ H++G V
Sbjct: 145 ETHELGGSTIAV 156
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
T + V +P DL+ YF FG + V D +GFGF+ FS +A +
Sbjct: 230 GTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKDAKKTSHRGFGFVTFSDEGAAERVA 289
Query: 163 LKKHKI-GNRIC 173
L+ H+I G++I
Sbjct: 290 LRNHEILGHQIA 301
>gi|194390332|dbj|BAG61935.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 47 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 106
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 107 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 163
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 164 DNKTNKRRGFCFITFKEEEPVKKIM 188
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 106 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 161
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 162 PMDNKTNKRR 171
>gi|4378711|gb|AAD19638.1| nucleic acid binding factor pRM10 [Rattus norvegicus]
Length = 298
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 90 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 149
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 150 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 205
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 206 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 257
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 87 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 146
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 147 DQKEHRLDGRVI----DPKKAMAMKKD 169
>gi|414591910|tpg|DAA42481.1| TPA: hypothetical protein ZEAMMB73_522608 [Zea mays]
Length = 449
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W +++ L+EYF +FG + A + D++TGR++GFGF+ F+ A + +K
Sbjct: 9 LFVGGISWETSEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADAAVAERVTTEK 68
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P ++ IG+ P + K+FVG L ++TE+D R +FE
Sbjct: 69 HMIDGRMVEAKKAVPRDDHSIVTKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFE 128
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 129 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQ 187
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+S T+S S + GP + + V G+P T+ D + YFEQFG + V D NT R
Sbjct: 87 HSIVTKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFEQFGVITDVVVMYDHNTQR 146
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S ++ KA+ K H++ ++ +V+
Sbjct: 147 PRGFGFITYDSEDAVDKALHKSFHELNGKMVEVK 180
>gi|358367583|dbj|GAA84201.1| heterogeneous nuclear ribonucleoprotein Hrp1 [Aspergillus kawachii
IFO 4308]
Length = 471
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D +E F +G V+D +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEHDFKEFFAQFGRVIDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + I K + V +A P+ +
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEAALSGPLEICGKPIEVKKAQPRGNL 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ ++D KE+F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 81 KTSKIFVGGVSQEANEHDFKEFFAQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 140
Query: 162 MLKKHKIGNRICDVR 176
+ +I + +V+
Sbjct: 141 LSGPLEICGKPIEVK 155
>gi|12851175|dbj|BAB28963.1| unnamed protein product [Mus musculus]
gi|148701715|gb|EDL33662.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Mus
musculus]
Length = 276
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>gi|46137515|ref|XP_390449.1| hypothetical protein FG10273.1 [Gibberella zeae PH-1]
Length = 552
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 12/203 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 123 MFIGGLNWETTDQSLRDYFAQFGEVVECTVMRDSSTGRSRGFGFLTFKDAKTVNIVMVKE 182
Query: 166 HKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I + P+ E+ SK+FVG ++ + T+ + +E+F +G VVD +
Sbjct: 183 HFLDGKILILLQIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLM 242
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD--NRNN 275
+P R F FVTFE ++ + I + I K + V +A P+ + E ++ R
Sbjct: 243 MDKDTGRP-RGFGFVTFENEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEASRRGK 301
Query: 276 FDRRNDRSRSPMSNSRQYGGGNG 298
F + D+S S +Q G NG
Sbjct: 302 FRKDGDQSNQ-GSMGQQMGNNNG 323
>gi|403263354|ref|XP_003924002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Saimiri boliviensis boliviensis]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|354497793|ref|XP_003511003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Cricetulus griseus]
Length = 286
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 103/195 (52%), Gaps = 14/195 (7%)
Query: 76 YCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
+ F + NSS ++ + + + + + G+ W T DLK+YF +FG + +
Sbjct: 4 FSVFKSHSNSSPRHTEAA----TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 59
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 60 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 116
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 117 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 176
Query: 249 NIKDKKVVVMEATPK 263
N+ K + A K
Sbjct: 177 NVGLSKCEIKVAMSK 191
>gi|74001707|ref|XP_535627.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Canis lupus familiaris]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|134057544|emb|CAK48898.1| unnamed protein product [Aspergillus niger]
Length = 471
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D +E F +G V+D +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEHDFKEFFAQFGRVIDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + I K + V +A P+ +
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEAALSGPLEICGKPIEVKKAQPRGNL 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ ++D KE+F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 81 KTSKIFVGGVSQEANEHDFKEFFAQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 140
Query: 162 MLKKHKIGNRICDVR 176
+ +I + +V+
Sbjct: 141 LSGPLEICGKPIEVK 155
>gi|116256514|ref|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Mus musculus]
gi|29145079|gb|AAH49098.1| Heterogeneous nuclear ribonucleoprotein D [Mus musculus]
gi|148688366|gb|EDL20313.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Mus
musculus]
Length = 306
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|119480409|ref|XP_001260233.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
gi|119408387|gb|EAW18336.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
Length = 462
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 12 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKE 71
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE + +E F +G V+D +
Sbjct: 72 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLM 126
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 127 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLAICGKPIEVKKAQPRGNL 174
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ + KE+F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 92 KTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 151
Query: 162 MLKKHKIGNRICDVR 176
+ + I + +V+
Sbjct: 152 LSRPLAICGKPIEVK 166
>gi|345327974|ref|XP_001505245.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Ornithorhynchus anatinus]
Length = 306
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 50 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKEAESVDKVMDQK 109
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 110 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 166
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 167 DNKTNKRRGFCFITFKEEEPVKKIM 191
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 35 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 94
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 95 LFKEAESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 150
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 151 EYFGGFGEVESIELPMDNKTNKRR 174
>gi|440898655|gb|ELR50103.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Bos grunniens
mutus]
Length = 277
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 21 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 80
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 81 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 137
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 138 DNKTNKRRGFCFITFKEEEPVKKIM 162
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 6 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 65
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 66 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 121
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 122 EYFGGFGEVESIELPMDNKTNKRR 145
>gi|417410064|gb|JAA51513.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 360
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 154 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 213
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 214 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 270
Query: 224 ---KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 271 DKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 315
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSL 243
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 153 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 210
>gi|71896731|ref|NP_001026314.1| heterogeneous nuclear ribonucleoprotein D0 [Gallus gallus]
gi|326918726|ref|XP_003205639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Meleagris gallopavo]
gi|53135954|emb|CAG32472.1| hypothetical protein RCJMB04_26e18 [Gallus gallus]
Length = 257
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 61 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+TF E + V K + ++ N+ K + A K
Sbjct: 118 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 162
>gi|410914854|ref|XP_003970902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 307
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K D ++GRS+GFGF+ F S K + K
Sbjct: 58 MFVGGLSWDTSKKDLKDYFTKFGEVSDCTIKFDSDSGRSRGFGFVLFKDPSSVEKVLEQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ +EPV K+FVG L P+ TE ++RE+F YG + ++ +P
Sbjct: 118 EHRLDGRLID---PKRAMAMKKEPV-KKIFVGGLIPEATEENIREYFGEYGEIENIELPL 173
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKMNERQDNRNNFDR 278
R F F+T++ ++ AK + + I+ + + A PK+ ++Q
Sbjct: 174 DPKSNKRRGFIFITYKEEASAKKCLENKFHTIEGSRCELKLAQPKEVYQQQQ-------- 225
Query: 279 RNDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
R RS S + G GY N Q GY N
Sbjct: 226 --YRGRSGGSRA-----GWGYGGNNQGWNQGYGN 252
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI 244
K+FVG L+ D ++ DL+++F +G V D I R F FV F+ S + ++
Sbjct: 55 TGKMFVGGLSWDTSKKDLKDYFTKFGEVSDCTIKFDSDSGRSRGFGFVLFKDPSSVEKVL 114
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I K+ + M+ P KK+
Sbjct: 115 EQKEHRLDGRLIDPKRAMAMKKEPVKKI 142
>gi|146197797|dbj|BAF57616.1| pRM10 protein [Dugesia japonica]
Length = 325
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 18/175 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W T+ DLK YFE +G + +K+DK TG S+GFGF+ + +S K + +
Sbjct: 74 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 133
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ N+ D + + TK EP K+FVG L+P++TE ++E+F YG+V V +P
Sbjct: 134 EHRLKNKKIDPKPAKPTK----EP-NKKIFVGGLSPEVTEEQIKEYFSQYGSVESVDLPF 188
Query: 224 -------KPFREFAFVTFELDSVAK-SLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
KP + F++F + AK ++I + ++ K V A PK ++N+ +
Sbjct: 189 DTSKGKRKP---YVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 240
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 89 QSKRSYPDNSGPVQ--NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
++K+ P + P + N + V G+ T+ +KEYF Q+G++E ++ D + G+ K
Sbjct: 138 KNKKIDPKPAKPTKEPNKKIFVGGLSPEVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKP 197
Query: 147 FGFIRFSSHESALKAML-KKHKIGNRICDVRI 177
+ F+ F++ ++A A++ +K + CDVR+
Sbjct: 198 YVFLSFTTEDAAKNAIINEKQDVLGSKCDVRM 229
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFEL-DSVAKSLIG 245
K+FVG L+ + TE DL+ +FE +G V +I R F FVT + DS+ K L
Sbjct: 73 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 132
Query: 246 QHVNIKDKKVVVMEATPKKKMNER 269
+K+KK+ A P K+ N++
Sbjct: 133 PEHRLKNKKIDPKPAKPTKEPNKK 156
>gi|301753349|ref|XP_002912535.1| PREDICTED: hypothetical protein LOC100472152 [Ailuropoda
melanoleuca]
Length = 642
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 386 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 445
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 446 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 502
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 503 DNKTNKRRGFCFITFKEEEPVKKIM 527
>gi|47086935|ref|NP_998467.1| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|44890703|gb|AAH66681.1| Zgc:77052 [Danio rerio]
Length = 309
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F +S + + +K
Sbjct: 47 MFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQK 106
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H++ R D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 107 EHRLDGRQID---PKRAMAIKKEPV-KKIFVGGLNPETTEEKIREYFGSFGEIETIELPT 162
Query: 224 ----KPFREFAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF+ + +V K L ++ N+ K + A PK+ ++Q
Sbjct: 163 DPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIAQPKEIYQQQQ 214
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVA 240
E A K+FVG L+ D ++ DL+++F +G V+D I R F F+ F E DSV
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 241 KSLIGQH-----VNIKDKKVVVMEATPKKKM 266
+ L + I K+ + ++ P KK+
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKEPVKKI 131
>gi|870743|dbj|BAA09522.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 267
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 11 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 70
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 71 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 127
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 128 DNKTNKRRGFCFITFKEEEPVKKIM 152
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 10 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 69
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 70 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 125
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 126 PMDNKTNKRR 135
>gi|348531962|ref|XP_003453476.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 315
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGF+ F S K + K
Sbjct: 58 VFVGGLSWDTSKTDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVDKVLEQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 118 EHRLDGRNID---PKRAMAMKKDPV-KKIFVGGLNPEATEETIREYFGAFGEIETIELPI 173
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K R F F+T+ E SV K L ++ NI+ + + A PK+
Sbjct: 174 DPKSKKRRGFIFITYKEETSVKKCLEKKYHNIQGGRCELKIAQPKE 219
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A KVFVG L+ D +++DL+++F +G V D I R F FV F+ +
Sbjct: 52 EEDAGKVFVGGLSWDTSKTDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVD 111
Query: 242 SLIGQHV------NIKDKKVVVMEATPKKKM 266
++ Q NI K+ + M+ P KK+
Sbjct: 112 KVLEQKEHRLDGRNIDPKRAMAMKKDPVKKI 142
>gi|403263350|ref|XP_003924000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Saimiri boliviensis boliviensis]
Length = 306
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIM 240
>gi|127139464|ref|NP_001076009.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Rattus
norvegicus]
gi|149046817|gb|EDL99591.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Rattus
norvegicus]
Length = 304
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 157 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 213
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 214 DNKTNKRRGFCFITFKEEEPVKKIM 238
>gi|119626277|gb|EAX05872.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_a [Homo sapiens]
Length = 377
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQH 247
FVG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
Query: 248 VNIKDKKVVVMEATPKK 264
N+ K + A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
>gi|212528804|ref|XP_002144559.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces marneffei
ATCC 18224]
gi|210073957|gb|EEA28044.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces marneffei
ATCC 18224]
Length = 454
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 28 MFIGGLNWETTDQSLKDYFSQFGEVSECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 87
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D ++ F +G VVD +
Sbjct: 88 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMID 144
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 145 KDTGRP-RGFGFVTFDSEAAVEATLSRPLEILGKSIEVKKAQPRGNL 190
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A
Sbjct: 108 KTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEA 166
Query: 162 MLKK 165
L +
Sbjct: 167 TLSR 170
>gi|351695030|gb|EHA97948.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Heterocephalus
glaber]
Length = 277
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 21 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 80
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 81 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 137
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 138 DNKTNKRRGFCFITFKEEEPVKKIM 162
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P T+ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 6 PRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 65
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 66 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 121
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 122 EYFGGFGEVESIELPMDNKTNKRR 145
>gi|238501964|ref|XP_002382216.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus flavus
NRRL3357]
gi|83767075|dbj|BAE57215.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692453|gb|EED48800.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus flavus
NRRL3357]
Length = 445
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D ++ F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKPIEVKKAQPRGNL 163
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ + D K++F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 81 KTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 140
Query: 162 MLKKHKIGNRICDVR 176
+ + +I + +V+
Sbjct: 141 LSRPLEILGKPIEVK 155
>gi|149046822|gb|EDL99596.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
gi|149046823|gb|EDL99597.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
Length = 257
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 61 EHKLNGKVIDPKRAKAMK--TKEPVK-KIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+TF E + V K + ++ N+ K + A K
Sbjct: 118 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 162
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIGQ 246
+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
+ K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 61 EHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIELP 116
Query: 307 QGGYNNKRR 315
NKRR
Sbjct: 117 MDNKTNKRR 125
>gi|351704017|gb|EHB06936.1| Heterogeneous nuclear ribonucleoprotein A/B, partial
[Heterocephalus glaber]
Length = 261
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + I K + A PK+ ++Q
Sbjct: 118 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 169
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQ 246
K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQD 271
+ D +V+ PKK M ++D
Sbjct: 61 KEHRLDGRVI----DPKKAMAMKKD 81
>gi|307178992|gb|EFN67508.1| RNA-binding protein squid [Camponotus floridanus]
Length = 327
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+E+F +G +E NVK D NTGRS+GF FI F+ ES K M
Sbjct: 48 LFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDKIMGAG 107
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ +L++ D++ F +G +V+V +P
Sbjct: 108 DHVINNKKVD---PKKAK-----ARHGKIFVGGLSTELSDDDIKNFFSQFGTIVEVEMPF 159
Query: 224 ----KPFREFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K+V V +ATPK
Sbjct: 160 DKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKATPK 204
>gi|395542043|ref|XP_003772944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Sarcophilus
harrisii]
Length = 306
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 50 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 109
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 110 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 166
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 167 DNKTNKRRGFCFITFKEEEPVKKIM 191
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 35 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 94
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 95 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 150
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 151 EYFGGFGEVESIELPMDNKTNKRR 174
>gi|115473043|ref|NP_001060120.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|38175737|dbj|BAC55617.2| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa
Japonica Group]
gi|113611656|dbj|BAF22034.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|215695373|dbj|BAG90564.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 472
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D+NTGR++GFGF+ F+ A + + K
Sbjct: 8 LFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 101 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
KA+ K H++ ++ +V+
Sbjct: 161 DKALHKNFHELNGKMVEVK 179
>gi|426229395|ref|XP_004008776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Ovis aries]
Length = 332
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|9588100|dbj|BAB03467.1| RNA binding protein p40 AUF1 [Rattus norvegicus]
Length = 304
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 157 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 213
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 214 DNKTNKRRGFCFITFKEEEPVKKIM 238
>gi|410913984|ref|XP_003970468.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 319
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F S K + K
Sbjct: 66 MFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGFILFKDPASVEKVLEQK 125
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ R+ D P+ +EPV KVFVG L PD ++ + E+FE +G + ++ +P+
Sbjct: 126 EHKLDGRVID---PKRALAMKKEPV-KKVFVGGLNPDTSKEVIHEYFEAFGEIENIELPQ 181
Query: 225 -----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+T+ E V K+L + + K + A PK+ ++Q
Sbjct: 182 DPKTEKRRGFVFITYKEEACVKKALENKFHTVGGSKCEIKIAQPKEVYQQQQ 233
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVA 240
+E A K+FVG L+ D ++ DL+++F +G V D I R F F+ F+ +
Sbjct: 59 DEEDAGKMFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGFILFKDPASV 118
Query: 241 KSLIGQHVN------IKDKKVVVMEATPKKKM 266
+ ++ Q + I K+ + M+ P KK+
Sbjct: 119 EKVLEQKEHKLDGRVIDPKRALAMKKEPVKKV 150
>gi|51477708|ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
gi|332819424|ref|XP_003310366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735086|ref|XP_003776520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pongo abelii]
gi|119626285|gb|EAX05880.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_g [Homo sapiens]
Length = 287
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|389623913|ref|XP_003709610.1| hypothetical protein MGG_06881 [Magnaporthe oryzae 70-15]
gi|351649139|gb|EHA56998.1| hypothetical protein MGG_06881 [Magnaporthe oryzae 70-15]
Length = 568
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 15/179 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 121 MFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPKTVNIVMVKE 180
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + T+ + ++ F +G VVD +
Sbjct: 181 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVVDATLM 235
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD-NRNN 275
+P R F FVTFE ++ ++ + + + I K + V +A P+ + E ++ NR N
Sbjct: 236 MDKDTGRP-RGFGFVTFESEAGVEACLARDLEIHGKLIEVKKAQPRGNLREEEEANRRN 293
>gi|116256516|ref|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus musculus]
gi|148688365|gb|EDL20312.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Mus
musculus]
Length = 287
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|74001711|ref|XP_857875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 9
[Canis lupus familiaris]
Length = 287
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|307105138|gb|EFN53389.1| hypothetical protein CHLNCDRAFT_36600 [Chlorella variabilis]
Length = 321
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 14/170 (8%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
+ L + G+ W T+ L+++F ++G++ A V D+ TGR +GFGF+ F+ +A +
Sbjct: 8 SAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRPRGFGFVTFTEPAAADAVV 67
Query: 163 LKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
H I R D + +P+ K P A KVFVG L+PD TE RE+F +G VV+
Sbjct: 68 EDVHVIDGRQIDAKKSVPQEMK-----PKARKVFVGGLSPDTTEDQFREYFSQFGEVVEA 122
Query: 221 LIPKPF-----REFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPK 263
I + R F FVTF D+ A+S+ G ++ KKV V ATPK
Sbjct: 123 QIMQDHMSGRSRGFGFVTFAEDASAESVFAAGTMHDLGGKKVEVKPATPK 172
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAK 241
P ++K+F+G L+ D TE LR+HF YG++V+ ++ +P R F FVTF + A
Sbjct: 6 PTSAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRP-RGFGFVTFTEPAAAD 64
Query: 242 SLIGQ-HV----NIKDKKVVVMEATPKKK 265
+++ HV I KK V E PK +
Sbjct: 65 AVVEDVHVIDGRQIDAKKSVPQEMKPKAR 93
>gi|344249843|gb|EGW05947.1| Heterogeneous nuclear ribonucleoprotein D0 [Cricetulus griseus]
Length = 257
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 61 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+TF E + V K + ++ N+ K + A K
Sbjct: 118 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 162
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIGQ 246
+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
+ K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 61 EHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIELP 116
Query: 307 QGGYNNKRR 315
NKRR
Sbjct: 117 MDNKTNKRR 125
>gi|127138754|ref|NP_001076010.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Rattus
norvegicus]
gi|149046820|gb|EDL99594.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Rattus
norvegicus]
Length = 285
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 138 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 194
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 195 DNKTNKRRGFCFITFKEEEPVKKIM 219
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 137 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 192
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 193 PMDNKTNKRR 202
>gi|310792726|gb|EFQ28187.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 445
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSTGRSRGFGFLTFRDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + +++F +G VVD +
Sbjct: 61 HFLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDQEFKDYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F FVTFE ++ + + + I K + V +A P+ + E ++
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVDACLSTSLEIHGKPIEVKKAQPRGNLREEEE 168
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + + V G+ TD + K+YF QFG + A + +DK+TGR +GFGF+
Sbjct: 71 KRAIPRDE-QEKTSKIFVGGVSQETTDQEFKDYFAQFGRVVDATLMMDKDTGRPRGFGFV 129
Query: 151 RFSSHESALKAML 163
F S E+ + A L
Sbjct: 130 TFES-EAGVDACL 141
>gi|71896513|ref|NP_001025523.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus (Silurana)
tropicalis]
gi|52355236|gb|AAU44811.1| AUF1 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F E K M K
Sbjct: 40 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQK 99
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G + + +P
Sbjct: 100 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGTFGEIEAIELPM 156
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+TF E D V K + ++ N+ K + A K
Sbjct: 157 DNKTNKRRGFCFITFKEEDPVKKIMEKKYHNVGLSKCEIKVALSK 201
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVAKSLIGQ 246
K+F+G L+ D T+ DL+++F +G VVD I R F FV F+ ++ Q
Sbjct: 39 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQ 98
Query: 247 HVNIKDKKVV 256
+ + KV+
Sbjct: 99 KEHKLNGKVI 108
>gi|444723247|gb|ELW63906.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Tupaia
chinensis]
Length = 296
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 52 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 111
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 112 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 168
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 169 DNKTNKRRGFCFITFKEEEPVKKIM 193
>gi|391863705|gb|EIT73005.1| RNA-binding protein [Aspergillus oryzae 3.042]
Length = 545
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 101 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 160
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D ++ F +G VVD +
Sbjct: 161 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLM 215
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 216 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKPIEVKKAQPRGNL 263
>gi|85101893|ref|XP_961230.1| hypothetical protein NCU04239 [Neurospora crassa OR74A]
gi|11595517|emb|CAC18311.1| related to heterogeneous nuclear ribonucleoprotein [Neurospora
crassa]
gi|28922772|gb|EAA31994.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 503
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTFE ++ ++ + ++ I K + V +A P+ +
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVEACLSANLEIHGKPIEVKKAQPRGNL 163
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH---ESA 158
+ + + V G+ TD++ +EYF QFG + A + +DK+TGR +GFGF+ F S E+
Sbjct: 81 KTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEAC 140
Query: 159 LKAMLKKH 166
L A L+ H
Sbjct: 141 LSANLEIH 148
>gi|9588102|dbj|BAB03468.1| RNA binding protein p37 AUF1 [Rattus norvegicus]
Length = 285
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 138 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 194
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 195 DNKTNKRRGFCFITFKEEEPVKKIM 219
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 137 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 192
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 193 PMDNKTNKRR 202
>gi|242046120|ref|XP_002460931.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
gi|241924308|gb|EER97452.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
Length = 471
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D+NTGR++GFGF+ F+ A + + K
Sbjct: 8 LFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S A+++ S + GP + + V G+ T+ + + YFEQFG + V D NT R
Sbjct: 87 SIASKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRP 146
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
+GFGFI + S ++ KA+ K H++ ++ +V+ +P+ G P+A
Sbjct: 147 RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPG---PIA 192
>gi|3747052|gb|AAC77437.1| estrogen response element binding protein [Saguinus oedipus]
Length = 358
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKGEEPVKKIM 240
>gi|332822801|ref|XP_518142.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
troglodytes]
Length = 338
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 78 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 137
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 138 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 193
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 194 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 245
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 75 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 134
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 135 DQKEHRLDGRVI----DPKKAMAMKKD 157
>gi|326489793|dbj|BAK01877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L+EYFE++G + A + D+ TGR++GFGFI F+ A + +++K
Sbjct: 8 LFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIMEK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + G+ P + K+FVG L +TE+D R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKE 185
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
++S S + GP + + V G+ T T+ D + YFEQFGT+ V D NT R +GF
Sbjct: 90 SKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGF 149
Query: 148 GFIRFSSHESALKAMLKK-HKIGNRICDVR 176
GFI + S ++ KA+ K H++ ++ +V+
Sbjct: 150 GFITYDSEDAVDKALFKTFHELNGKMVEVK 179
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+F+G ++ D E LRE+FE YG VV+ +I + R F F+ F +VA+
Sbjct: 2 EADAGKLFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAE 61
Query: 242 SLIGQHVNIKDKKVVVMEATPK 263
+I + I + V +A P+
Sbjct: 62 RVIMEKHMIDGRMVEAKKAVPR 83
>gi|218199915|gb|EEC82342.1| hypothetical protein OsI_26646 [Oryza sativa Indica Group]
Length = 472
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+EYF +FG + A + D+NTGR++GFGF+ F+ A + + K
Sbjct: 8 LFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 101 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
KA+ K H++ ++ +V+
Sbjct: 161 DKALHKNFHELNGKMVEVK 179
>gi|344284992|ref|XP_003414248.1| PREDICTED: hypothetical protein LOC100654996 [Loxodonta africana]
Length = 595
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 339 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 398
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 399 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 455
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 456 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 501
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P T+ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 324 PRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 383
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 384 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIFV-GGLSPDTPEEKIR 439
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 440 EYFGGFGEVESIELPMDNKTNKRR 463
>gi|383873338|ref|NP_001244741.1| heterogeneous nuclear ribonucleoprotein A/B [Macaca mulatta]
gi|380787211|gb|AFE65481.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|383409139|gb|AFH27783.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|384940566|gb|AFI33888.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
Length = 332
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|122720941|gb|ABM66456.1| RNA-binding protein [Brassica juncea]
Length = 179
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L++Y +FG LE V D++TGRS+GFG++ F+S + A +A+ +H +GNRI +V++
Sbjct: 1 LRDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASSQDAKEALKGEHFLGNRILEVKV-A 59
Query: 180 STKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFV 232
+ K +P +++FV + P ++ESD R HFE YG + D+ +P K R F+
Sbjct: 60 TPKEEMRQPAKKVTRIFVARIPPSVSESDFRRHFEKYGEITDLYMPKDHNSKQHRGIGFI 119
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
TF + L+ ++ V V ATPK+
Sbjct: 120 TFATSDSVEDLMEDTHDLGGTTVAVDRATPKE 151
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + +++D + +FE++G + + D N+ + +G GFI F++ +S M
Sbjct: 73 TRIFVARIPPSVSESDFRRHFEKYGEITDLYMPKDHNSKQHRGIGFITFATSDSVEDLME 132
Query: 164 KKHKIGNRICDV 175
H +G V
Sbjct: 133 DTHDLGGTTVAV 144
>gi|449499935|ref|XP_004175398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 340
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 62 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 121
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 122 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 178
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 179 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 224
>gi|317142958|ref|XP_001819217.2| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus oryzae
RIB40]
Length = 557
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 113 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 172
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D ++ F +G VVD +
Sbjct: 173 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLM 227
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 228 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKPIEVKKAQPRGNL 275
>gi|242043256|ref|XP_002459499.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
gi|241922876|gb|EER96020.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
Length = 455
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 100/180 (55%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W +++ L++YF +FG + A + D++TGR++GFGF+ F+ A + + K
Sbjct: 15 LFVGGISWETSEDRLRDYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADPAVAERVTMDK 74
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P ++ IG+ P + K+FVG L ++TE+D R +FE
Sbjct: 75 HMIDGRMVEAKKAVPRDDHSIVSKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFE 134
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 135 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQ 193
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+S ++S S + GP + + V G+P T+ D + YFEQFG + V D NT R
Sbjct: 93 HSIVSKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFEQFGVITDVVVMYDHNTQR 152
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S ++ KA+ K H++ ++ +V+
Sbjct: 153 PRGFGFITYDSEDAVDKALHKSFHELNGKMVEVK 186
>gi|870747|dbj|BAA09524.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 215
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 8 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 67
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 68 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 124
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 125 DNKTNKRRGFCFITFKEEEPVKKIM 149
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 7 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 66
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 67 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 122
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 123 PMDNKTNKRR 132
>gi|298710527|emb|CBJ25591.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 502
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T+ L+ +F ++GTL + DK TG +GFGFI+F + + ++
Sbjct: 150 LFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQE 209
Query: 166 HKIGNRICDVR--IPESTKIG----TEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVV 218
HKI ++ DV+ +P+S G + P + K+FVG L P + ++ R++FE +G VV
Sbjct: 210 HKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVV 269
Query: 219 DVLI-----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER 269
D ++ + R F FVTF+ D+V ++ I K V V A PK+ + R
Sbjct: 270 DAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGR 325
>gi|452981460|gb|EME81220.1| hypothetical protein MYCFIDRAFT_211785, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 353
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 92 RSYPDNSGPV---QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
R P + P+ ++ + + G+ W TD LK+YF QFG + V D TGRS+GFG
Sbjct: 88 RDTPADEKPIGIKEDGKMFIGGLNWETTDESLKQYFSQFGEVVECTVMRDGATGRSRGFG 147
Query: 149 FIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLR 208
F+ F ++ M+K+H + ++ D P+ E+ +K+FVG ++ + TE+D +
Sbjct: 148 FLTFKDPKNVNTVMVKEHSLDGKLID---PKRAIPRDEQERTAKIFVGGVSQEATEADFK 204
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
+ F +G V+D + +P R F FVTF+ + + + + I K + V A P
Sbjct: 205 DFFMKFGRVLDATLMMDKDTGRP-RGFGFVTFDSELAVERTLEGPLAILGKPIEVKRAQP 263
Query: 263 KKKMNERQDNRNNFDRR 279
+ KM E + ++ + R
Sbjct: 264 RGKMGEEEAPKSKWQPR 280
>gi|281353447|gb|EFB29031.1| hypothetical protein PANDA_013362 [Ailuropoda melanoleuca]
Length = 316
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 56 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 115
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 116 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 171
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 172 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 223
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQ 246
K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++ Q
Sbjct: 55 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 114
Query: 247 HVNIKDKKVVVMEATPKKKMNERQD 271
+ D +V+ PKK M ++D
Sbjct: 115 KEHRLDGRVI----DPKKAMAMKKD 135
>gi|345311474|ref|XP_001513207.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ornithorhynchus anatinus]
Length = 480
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 214 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKEAASVDKVLDQK 273
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +R++F +G + + +P
Sbjct: 274 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEDKIRDYFGEFGEIEAIELPM 329
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + N+ K + A PK+ ++Q
Sbjct: 330 DPKTNKRRGFVFITFKEEEPVKKILEKKFHNVSGSKCEIKVAQPKEVYQQQQ 381
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVA 240
++P K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ +
Sbjct: 207 KQPELRKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKEAASV 266
Query: 241 KSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
++ Q + D +V+ PKK M ++D
Sbjct: 267 DKVLDQKEHRLDGRVI----DPKKAMAMKKD 293
>gi|317142960|ref|XP_003189459.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus oryzae
RIB40]
Length = 531
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 113 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 172
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D ++ F +G VVD +
Sbjct: 173 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLM 227
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 228 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKPIEVKKAQPRGNL 275
>gi|358388987|gb|EHK26580.1| hypothetical protein TRIVIDRAFT_77860 [Trichoderma virens Gv29-8]
Length = 525
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D ++GRS+GFGF+ F ++ M+K+
Sbjct: 114 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDPKTVNIVMVKE 173
Query: 166 HKIGNRICDVRI-------PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
H + +I + P+ E+ SK+FVG ++ D T+ + RE+F +G VV
Sbjct: 174 HFLDGKIVSLLPCHNPCIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREYFAQFGRVV 233
Query: 219 DVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD- 271
D + +P R F FVTFE ++ + I + I K + V +A P+ + E ++
Sbjct: 234 DATLMMDKDTGRP-RGFGFVTFESEAGVDACINVPLEIHGKPIEVKKAQPRGNLREEEEA 292
Query: 272 -NRNNFDRRNDRS 283
R F + ++S
Sbjct: 293 AKRGKFRKGEEQS 305
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ TD + +EYF QFG + A + +DK+TGR +GFGF+ F S E+ + A
Sbjct: 204 KTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFES-EAGVDA 262
Query: 162 ML 163
+
Sbjct: 263 CI 264
>gi|348551765|ref|XP_003461700.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Cavia
porcellus]
Length = 327
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|242047760|ref|XP_002461626.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
gi|241925003|gb|EER98147.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
Length = 453
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 100/180 (55%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W +++ L++YF +FG + A + D++TGR++GFGF+ F+ A + + K
Sbjct: 13 LFVGGISWETSEDRLRDYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADPAVAERVTMDK 72
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P ++ IG+ P + K+FVG L ++TE+D R +FE
Sbjct: 73 HMIDGRMVEAKKAVPRDDHSIVSKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFE 132
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 133 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQ 191
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+S ++S S + GP + + V G+P T+ D + YFEQFG + V D NT R
Sbjct: 91 HSIVSKSNASSIGSPGPGRTRKIFVGGLPSNVTEADFRRYFEQFGVITDVVVMYDHNTQR 150
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S ++ KA+ K H++ ++ +V+
Sbjct: 151 PRGFGFITYDSEDAVDKALHKSFHELNGKMVEVK 184
>gi|320588554|gb|EFX01022.1| heterogeneous nuclear ribonucleoprotein hrp1 [Grosmannia clavigera
kw1407]
Length = 524
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 43 MFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDSATGRSRGFGFLTFKDPKTVNIVMVKE 102
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + +E+F +G VVD +
Sbjct: 103 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLMMD 159
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQD 271
+P R F F+TFE ++ ++ + + I K + V +A P+ + + D
Sbjct: 160 KDTGRP-RGFGFLTFESEAGVEACLSTELEIHGKAIEVKKAQPRGNLRDDDD 210
>gi|431916163|gb|ELK16415.1| Heterogeneous nuclear ribonucleoprotein D0 [Pteropus alecto]
Length = 334
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIM 221
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 139 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 195 PMDNKTNKRR 204
>gi|162951821|ref|NP_001106165.1| heterogeneous nuclear ribonucleoprotein A/B [Sus scrofa]
gi|160858224|dbj|BAF93845.1| CArG-binding factor A [Sus scrofa]
Length = 302
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 88 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 147
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 148 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 203
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 204 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 255
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 85 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 144
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 145 DQKEHRLDGRVI----DPKKAMAMKKD 167
>gi|171451954|dbj|BAG15905.1| DAZAP [Dugesia japonica]
Length = 354
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ + T+ LK YF +FG + A+V +D TGRS+GFG++R+S +E+ K M K
Sbjct: 13 LFVGGLHQSTTNESLKSYFSKFGDVVEASVMMDHRTGRSRGFGYVRYSDNEAVQKVMSTK 72
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225
H + + D + P + + K+FVG + P+ E LR+ F+ +G + ++ + K
Sbjct: 73 HHLEGKEIDPK-PCNVNMKGRSRRQLKIFVGGIAPEHNEETLRDFFKQFGNITELTLMKD 131
Query: 226 -----FREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATPK 263
R FAFV F+ ++V K LI H+ I +K+V + P+
Sbjct: 132 QSGHRHRGFAFVAFDDEAVVKQLINDHILTIGNKQVEIKPMEPQ 175
>gi|255582445|ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223528341|gb|EEF30383.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 484
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A + +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVAERVI 64
Query: 163 LKKHKIGNRICDVR--IPE-----------STKIGTEEPVAS-KVFVGSLTPDLTESDLR 208
++KH I R+ + + +P S+ G+ P + K+FVG L +TE+D R
Sbjct: 65 MEKHNIDGRMVEAKKAVPRDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTETDFR 124
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE YG + DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KYFEQYGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRAV 183
Query: 262 PKK 264
PK+
Sbjct: 184 PKE 186
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T+ D ++YFEQ+GT+ V D NT R +GFGFI + S E+
Sbjct: 102 GPGRTRKIFVGGLASTVTETDFRKYFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 161
Query: 159 LKAMLKK-HKIGNRICDVR 176
K ++K H++ ++ +V+
Sbjct: 162 DKVLMKTFHELNGKMVEVK 180
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F +G VV+ +I K R F FV F +VA+ +I +
Sbjct: 7 KLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVAERVIME 66
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
NI + V +A P+ N
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQN 87
>gi|395861189|ref|XP_003802876.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Otolemur
garnettii]
Length = 332
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|121715226|ref|XP_001275222.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus clavatus
NRRL 1]
gi|119403379|gb|EAW13796.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus clavatus
NRRL 1]
Length = 466
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + TE + + F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEATEQEFKGFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVENALSRPLAICGKPIEVKKAQPRGNL 163
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K +F QFG + A + +DK+TGR +GFGF+ F S + A+
Sbjct: 83 SKIFVGGVSQEATEQEFKGFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVENALS 142
Query: 164 KKHKIGNRICDVR 176
+ I + +V+
Sbjct: 143 RPLAICGKPIEVK 155
>gi|440898381|gb|ELR49895.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Bos grunniens
mutus]
Length = 262
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 118 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 169
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQ 246
K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQD 271
+ D +V+ PKK M ++D
Sbjct: 61 KEHRLDGRVI----DPKKAMAMKKD 81
>gi|426229393|ref|XP_004008775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Ovis aries]
Length = 285
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|62898411|dbj|BAD97145.1| heterogeneous nuclear ribonucleoprotein AB isoform a variant [Homo
sapiens]
Length = 332
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|149046824|gb|EDL99598.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_g [Rattus
norvegicus]
Length = 208
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 61 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 117
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 118 DNKTNKRRGFCFITFKEEEPVKKIM 142
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIGQ 246
+F+G L+ D T+ DL+++F +G VVD I R F FV F E +SV K + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
+ K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 61 EHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIELP 116
Query: 307 QGGYNNKRR 315
NKRR
Sbjct: 117 MDNKTNKRR 125
>gi|94966849|ref|NP_001035612.1| heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|73587357|gb|AAI02924.1| Heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|296485515|tpg|DAA27630.1| TPA: heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
Length = 285
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|301777376|ref|XP_002924104.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ailuropoda melanoleuca]
Length = 261
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 117 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 168
>gi|380786855|gb|AFE65303.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|383409141|gb|AFH27784.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|384940568|gb|AFI33889.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
Length = 285
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|508270|gb|AAA64654.1| A+U-rich RNA-binding protein [Mus musculus]
Length = 269
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P ++ + + + G+ W T DLK+YF +FG +
Sbjct: 37 IDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 96
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 97 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 153
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 154 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDKKTNKRRGFCFITFKEEEPVKKIM 209
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFV 232
P T+ + K+F+G L+ D T+ DL+++F +G VVD + P R F FV
Sbjct: 53 PRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 112
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 113 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 168
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 169 EYFGGFGEVESIELPMDKKTNKRR 192
>gi|410225700|gb|JAA10069.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260870|gb|JAA18401.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299218|gb|JAA28209.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|66911597|gb|AAH97855.1| LOC496375 protein [Xenopus laevis]
Length = 286
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F E K M K
Sbjct: 31 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 91 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEDKIREYFGTFGEVEAIELPM 147
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K+++
Sbjct: 148 DNKTNKRRGFCFITFKEEDPVKNIM 172
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVAKSLIGQ 246
K+F+G L+ D T+ DL+++F +G VVD I R F FV F+ ++ Q
Sbjct: 30 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQ 89
Query: 247 HVNIKDKKVV 256
+ + KV+
Sbjct: 90 KEHKLNGKVI 99
>gi|55956919|ref|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo
sapiens]
gi|426351244|ref|XP_004043165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Gorilla gorilla gorilla]
gi|21757498|dbj|BAC05134.1| unnamed protein product [Homo sapiens]
gi|33874222|gb|AAH36708.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574227|gb|EAW53842.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Homo
sapiens]
Length = 332
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|194387362|dbj|BAG60045.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 63 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 122
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 123 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 178
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 179 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 230
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 60 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 119
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 120 DQKEHRLDGRVI----DPKKAMAMKKD 142
>gi|322786135|gb|EFZ12742.1| hypothetical protein SINV_01194 [Solenopsis invicta]
Length = 330
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 15/201 (7%)
Query: 70 WQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGT 129
+ D V F+ +G + + + + ++ L V G+ W TD +L+E+F +G
Sbjct: 10 FSDDVGEQNFEKNGEAESGGGGDAVENGQDSQEDRKLFVGGLSWETTDKELREHFSTYGD 69
Query: 130 LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEP 188
+E NVK D NTGRS+GF FI F+ E+ K M H I N+ D P+ K
Sbjct: 70 IESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSAGDHVINNKKVD---PKKAK-----A 121
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSL 243
K+FVG L+ +L++ D++ F +G +V+V +P + F F+TFE + V L
Sbjct: 122 RHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVEMPFDKTKNQRKGFCFITFESEQVVNEL 181
Query: 244 IGQ-HVNIKDKKVVVMEATPK 263
+ I K V V +ATPK
Sbjct: 182 LKTPKQTINGKAVDVKKATPK 202
>gi|414887334|tpg|DAA63348.1| TPA: hypothetical protein ZEAMMB73_769138, partial [Zea mays]
Length = 467
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 20/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+ YF +FG + A + D+NTGR++GFGF+ F+ A + L K
Sbjct: 8 LFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLDK 67
Query: 166 HKIGNRICDVR--IPE---------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEY 213
H I R+ + + +P ++ IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFEQ 127
Query: 214 YGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 FGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 185
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 100 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 159
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
KA+ K H++ ++ +V+ +P+ G P+A
Sbjct: 160 DKALHKNFHELNGKMVEVKRAVPKEQSPG---PIA 191
>gi|347963746|ref|XP_003436985.1| AGAP000399-PB [Anopheles gambiae str. PEST]
gi|333467054|gb|EGK96461.1| AGAP000399-PB [Anopheles gambiae str. PEST]
Length = 371
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K + +
Sbjct: 105 LFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAVS 164
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 165 EHVINNKKVD---PKKAK-----ARYGKIFVGGLTSEISDEEIKTFFGQFGNIVEVEMPF 216
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 217 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 261
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFE-LDSVAKSL-I 244
K+FVG L+ + ++ +L+EHF YG + + + P R FAF+ ++ DS+ K + +
Sbjct: 104 KLFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAV 163
Query: 245 GQHVNIKDKKV 255
+HV I +KKV
Sbjct: 164 SEHV-INNKKV 173
>gi|302780479|ref|XP_002972014.1| hypothetical protein SELMODRAFT_172407 [Selaginella moellendorffii]
gi|302781554|ref|XP_002972551.1| hypothetical protein SELMODRAFT_172861 [Selaginella moellendorffii]
gi|300160018|gb|EFJ26637.1| hypothetical protein SELMODRAFT_172861 [Selaginella moellendorffii]
gi|300160313|gb|EFJ26931.1| hypothetical protein SELMODRAFT_172407 [Selaginella moellendorffii]
Length = 167
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W TD LKEYF+ +G + A + D+ TGR +GFGF+ F+ + A + + K
Sbjct: 8 IFVGGVSWETTDEKLKEYFQSYGDVVEAMIMKDRTTGRGRGFGFVVFADPDVADRVVQDK 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H I ++ + + + +E +K+FVG L P+++E + +++FE +G + D+++
Sbjct: 68 HSINGKLVEAK----KAVPRDEHQNAKIFVGGLAPNVSEEEFKQYFEQFGNITDIVVMYD 123
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
+P R F F+TF+ + S++ + + +KDK V V A PK
Sbjct: 124 HATQRP-RGFGFITFDSEEAVDSVLQKTFHELKDKMVEVKRAVPK 167
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
S N ++K++ P + QN + V G+ ++ + K+YFEQFG + V D T
Sbjct: 69 SINGKLVEAKKAVPRDEH--QNAKIFVGGLAPNVSEEEFKQYFEQFGNITDIVVMYDHAT 126
Query: 142 GRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR 176
R +GFGFI F S E A+ ++L+K H++ +++ +V+
Sbjct: 127 QRPRGFGFITFDS-EEAVDSVLQKTFHELKDKMVEVK 162
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLIGQ 246
K+FVG ++ + T+ L+E+F+ YG VV+ +I K R F FV F VA ++
Sbjct: 7 KIFVGGVSWETTDEKLKEYFQSYGDVVEAMIMKDRTTGRGRGFGFVVFADPDVADRVVQD 66
Query: 247 HVNIKDKKVVVMEATPK 263
+I K V +A P+
Sbjct: 67 KHSINGKLVEAKKAVPR 83
>gi|115400789|ref|XP_001215983.1| hypothetical protein ATEG_06805 [Aspergillus terreus NIH2624]
gi|114191649|gb|EAU33349.1| hypothetical protein ATEG_06805 [Aspergillus terreus NIH2624]
Length = 454
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H + +I D + IP E+ SK+FVG ++ + E D + F +G VVD +
Sbjct: 61 HYLDGKIIDPKRAIPRD-----EQEKTSKIFVGGVSQEANEQDFKSFFMQFGRVVDATLM 115
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 116 IDKDTGRP-RGFGFVTFDSEAAVEAALSRPLEILGKPIEVKKAQPRGNL 163
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ + D K +F QFG + A + +DK+TGR +GFGF+ F S + A
Sbjct: 81 KTSKIFVGGVSQEANEQDFKSFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 140
Query: 162 MLKKHKIGNRICDVR 176
+ + +I + +V+
Sbjct: 141 LSRPLEILGKPIEVK 155
>gi|347963748|ref|XP_310701.5| AGAP000399-PA [Anopheles gambiae str. PEST]
gi|333467053|gb|EAA06653.5| AGAP000399-PA [Anopheles gambiae str. PEST]
Length = 363
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K + +
Sbjct: 105 LFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAVS 164
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 165 EHVINNKKVD---PKKAK-----ARYGKIFVGGLTSEISDEEIKTFFGQFGNIVEVEMPF 216
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 217 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 261
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFE-LDSVAKSL-I 244
K+FVG L+ + ++ +L+EHF YG + + + P R FAF+ ++ DS+ K + +
Sbjct: 104 KLFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAV 163
Query: 245 GQHVNIKDKKV 255
+HV I +KKV
Sbjct: 164 SEHV-INNKKV 173
>gi|291401535|ref|XP_002717031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Oryctolagus
cuniculus]
Length = 448
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 192 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 251
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 252 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 308
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 309 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 354
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFV 232
P T+ + K+F+G L+ D T+ DL+++F +G VVD + P R F FV
Sbjct: 177 PRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 236
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 237 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIFV-GGLSPDTPEEKIR 292
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 293 EYFGGFGEVESIELPMDNKTNKRR 316
>gi|402873600|ref|XP_003900659.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Papio
anubis]
Length = 311
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 239
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|148227150|ref|NP_001088992.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus laevis]
gi|52082714|gb|AAU25946.1| p37 AUF1 [Xenopus laevis]
Length = 295
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F E K M K
Sbjct: 40 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQK 99
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 100 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEDKIREYFGTFGEVEAIELPM 156
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K+++
Sbjct: 157 DNKTNKRRGFCFITFKEEDPVKNIM 181
>gi|226494259|ref|NP_001146396.1| uncharacterized protein LOC100279976 [Zea mays]
gi|219887017|gb|ACL53883.1| unknown [Zea mays]
gi|223975747|gb|ACN32061.1| unknown [Zea mays]
Length = 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 20/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+ YF +FG + A + D+NTGR++GFGF+ F+ A + L K
Sbjct: 8 LFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLDK 67
Query: 166 HKIGNRICDVR--IPE---------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEY 213
H I R+ + + +P ++ IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFEQ 127
Query: 214 YGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 FGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 185
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 100 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 159
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
KA+ K H++ ++ +V+ +P+ G P+A
Sbjct: 160 DKALHKNFHELNGKMVEVKRAVPKEQSPG---PIA 191
>gi|387016396|gb|AFJ50317.1| Heterogeneous nuclear ribonucleoprotein D0 isoform b [Crotalus
adamanteus]
Length = 330
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K K
Sbjct: 74 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVEKVTDQK 133
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 134 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 190
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 191 DNKTNKRRGFCFITFKDEEAVKKIM 215
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVAKSLIGQ 246
K+FVG L+ D T+ DL+++F +G VVD I R F FV F+ + + Q
Sbjct: 73 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVEKVTDQ 132
Query: 247 HVNIKDKKVVVMEATPK--KKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQ 304
+ + KV+ PK K M ++ + F +P R+Y GG G ++ +
Sbjct: 133 KEHKLNGKVI----DPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIE 187
Query: 305 QQQGGYNNKRR 315
NKRR
Sbjct: 188 LPMDNKTNKRR 198
>gi|354472673|ref|XP_003498562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Cricetulus griseus]
Length = 243
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 5 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 64
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 65 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 120
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+T+ E D V K L + + K + A PK+ ++Q
Sbjct: 121 DPKLNKRRGFVFITYKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 172
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSL 243
+ K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + +
Sbjct: 1 MPEKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 60
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQD 271
+ Q + D +V+ PKK M ++D
Sbjct: 61 LDQKEHRLDGRVI----DPKKAMAMKKD 84
>gi|350294627|gb|EGZ75712.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 324
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTFE ++ ++ + ++ I K + V +A P+ +
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVEACLSANLEIHGKPIEVKKAQPRGNL 163
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH---ESA 158
+ + + V G+ TD++ +EYF QFG + A + +DK+TGR +GFGF+ F S E+
Sbjct: 81 KTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEAC 140
Query: 159 LKAMLKKH 166
L A L+ H
Sbjct: 141 LSANLEIH 148
>gi|353241965|emb|CCA73743.1| probable heterogeneous nuclear ribonucleoprotein HRP1
[Piriformospora indica DSM 11827]
Length = 343
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W TD+ L+ YF QFG +E + D GRS+GF F+ F + K M+++
Sbjct: 1 MFVGGLNWDTTDDGLRNYFSQFGRVEACTIMRDP-AGRSRGFAFLTFEDPAAVNKVMVQE 59
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ TE K+FVG L P +T L+E+F +G V+D +
Sbjct: 60 HYLDGKIID---PKRAIPRTEHQRTVKMFVGGLAPSVTNEGLKEYFGQFGKVIDATVMVD 116
Query: 223 --PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMN-ERQDNRNNFDR 278
+ F FVTF+ S A+ L G + I K + V A P+ +N +R NR +
Sbjct: 117 RDSSRSKGFGFVTFDDQSGAERLFGMPGLAIDGKTIEVKMAQPRAGLNSDRSQNRGGYSN 176
Query: 279 RN 280
N
Sbjct: 177 TN 178
>gi|221220742|gb|ACM09032.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 84 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVLEQK 143
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D P+ +EP A K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 144 EHRLDGRQID---PKKAMAMKKEP-AKKIFVGGLNPEATEETIREYFGTFGEIESIELPV 199
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVV 256
K R F F+TF E +V K L + N+ KV
Sbjct: 200 DLKFKKRRGFIFITFKEEATVKKCLEKKFHNVCGTKVT 237
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSL 243
A K+FVG L+ D ++ DL+++F +G V D I R F F+ F E SV K L
Sbjct: 81 AGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVL 140
Query: 244 IGQH-----VNIKDKKVVVMEATPKKKM 266
+ I KK + M+ P KK+
Sbjct: 141 EQKEHRLDGRQIDPKKAMAMKKEPAKKI 168
>gi|332265255|ref|XP_003281643.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Nomascus
leucogenys]
Length = 261
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 117 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 168
>gi|336263120|ref|XP_003346341.1| hypothetical protein SMAC_07818 [Sordaria macrospora k-hell]
gi|380091669|emb|CCC10801.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 532
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF Q+G + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQYGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNVVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+P R F FVTFE ++ + + ++ I K + V +A P+ +
Sbjct: 118 KDTGRP-RGFGFVTFESEAGVDACLSANLEIHGKPIEVKKAQPRGNL 163
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH---ESA 158
+ + + V G+ TD++ +EYF QFG + A + +DK+TGR +GFGF+ F S ++
Sbjct: 81 KTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVDAC 140
Query: 159 LKAMLKKH 166
L A L+ H
Sbjct: 141 LSANLEIH 148
>gi|223646910|gb|ACN10213.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
gi|223672773|gb|ACN12568.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 84 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVLEQK 143
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D P+ +EP A K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 144 EHRLDGRQID---PKKAMAMKKEP-AKKIFVGGLNPEATEETIREYFGTFGEIESIELPV 199
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVV 256
K R F F+TF E +V K L + N+ KV
Sbjct: 200 DPKFKKRRGFIFITFKEEATVKKCLEKKFHNVCGTKVT 237
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSL 243
A K+FVG L+ D ++ DL+++F +G V D I R F F+ F E SV K L
Sbjct: 81 AGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVL 140
Query: 244 IGQH-----VNIKDKKVVVMEATPKKKM 266
+ I KK + M+ P KK+
Sbjct: 141 EQKEHRLDGRQIDPKKAMAMKKEPAKKI 168
>gi|355691911|gb|EHH27096.1| hypothetical protein EGK_17210, partial [Macaca mulatta]
gi|355750475|gb|EHH54813.1| hypothetical protein EGM_15724, partial [Macaca fascicularis]
Length = 262
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 118 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 169
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQ 246
K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 247 HVNIKDKKVVVMEATPKKKMNERQD 271
+ D +V+ PKK M ++D
Sbjct: 61 KEHRLDGRVI----DPKKAMAMKKD 81
>gi|47221330|emb|CAF97248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 312
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+YF +FG + +K D ++GRS+GFGF+ F S K + +K
Sbjct: 58 MFVGGLSWDTSKKDLKDYFTKFGDVSDCTIKFDSDSGRSRGFGFVLFKDPSSVEKVLQQK 117
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H++ R+ D P+ +EPV K+FVG L P+ TE +RE+F +G + ++ +P
Sbjct: 118 EHRLDGRLID---PKRAMAMKKEPV-KKIFVGGLNPEATEETIREYFGAFGEIENIDLPL 173
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKMNERQ 270
K R F F+T++ ++ AK + + + ++ + + A PK+ ++Q
Sbjct: 174 DPKSKKRRGFIFITYKEEASAKKCLEKKFHTVEGSRCELKLAQPKEVYQQQQ 225
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI 244
K+FVG L+ D ++ DL+++F +G V D I R F FV F+ S + ++
Sbjct: 55 TGKMFVGGLSWDTSKKDLKDYFTKFGDVSDCTIKFDSDSGRSRGFGFVLFKDPSSVEKVL 114
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I K+ + M+ P KK+
Sbjct: 115 QQKEHRLDGRLIDPKRAMAMKKEPVKKI 142
>gi|414883901|tpg|DAA59915.1| TPA: hypothetical protein ZEAMMB73_814821 [Zea mays]
Length = 448
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W +++ L+EYF +FG + A + D++TGR++GFGF+ F+ A + + K
Sbjct: 9 LFVGGISWETSEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADAAVAERVTMDK 68
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + G+ P + K+FVG L +TE+D R +FE
Sbjct: 69 HTIDGRMVEAKKAVPRDDHSIVSKSNGSSTGSPGPGRTRKIFVGGLPSSVTEADFRRYFE 128
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 129 QFGIITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQ 187
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+S ++S S + GP + + V G+P + T+ D + YFEQFG + V D NT R
Sbjct: 87 HSIVSKSNGSSTGSPGPGRTRKIFVGGLPSSVTEADFRRYFEQFGIITDVVVMYDHNTQR 146
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S ++ KA+ K H++ ++ +V+
Sbjct: 147 PRGFGFITYDSEDAVDKALHKSFHELNGKMVEVK 180
>gi|324501271|gb|ADY40568.1| RNA-binding protein squid [Ascaris suum]
Length = 303
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
++ + V GI + T+ DL YF QFG + A VK D+NTGRS+GF F+ F++ E A KA
Sbjct: 36 EDKKIFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKFDRNTGRSRGFAFVEFATGE-ACKA 94
Query: 162 ML--KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L ++ + N+ +V+ +S + KVFVG L D E DLR HF YG V D
Sbjct: 95 ALGTREQTLKNKQIEVKPAKSRE-------NKKVFVGGLPADFPEEDLRAHFAQYGKVED 147
Query: 220 VLIP-----KPFREFAFVTFELDSVA 240
+ P K R FAF+ FE + A
Sbjct: 148 IEWPFDKQTKARRNFAFIVFEEEESA 173
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+N + V G+P F + DL+ +F Q+G +E DK T + F FI F ESA +A
Sbjct: 117 ENKKVFVGGLPADFPEEDLRAHFAQYGKVEDIEWPFDKQTKARRNFAFIVFEEEESADRA 176
Query: 162 -MLKKHKIGNRICDVR 176
K G+R CDV+
Sbjct: 177 SSTPKQTFGSRECDVK 192
>gi|55956921|ref|NP_004490.2| heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo
sapiens]
gi|426351246|ref|XP_004043166.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Gorilla gorilla gorilla]
gi|12803583|gb|AAH02625.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13528732|gb|AAH04561.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13905354|gb|AAH01616.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|14424683|gb|AAH09359.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574228|gb|EAW53843.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574229|gb|EAW53844.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574230|gb|EAW53845.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|193786114|dbj|BAG51397.1| unnamed protein product [Homo sapiens]
gi|208966452|dbj|BAG73240.1| heterogeneous nuclear ribonucleoprotein A/B [synthetic construct]
Length = 285
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|410225698|gb|JAA10068.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260868|gb|JAA18400.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299216|gb|JAA28208.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|410343159|gb|JAA40526.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ + PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKAPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 129 DQKEHRLDGRVIDPKKAMAMKKAPVKKI 156
>gi|115486383|ref|NP_001068335.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|108864610|gb|ABA94921.2| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645557|dbj|BAF28698.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|215697828|dbj|BAG92021.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740693|dbj|BAG97349.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 467
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L+EYF+++G + A + D+ TGR++GFGFI F+ A + +++K
Sbjct: 8 LFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIMEK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + G+ P + K+FVG L +TE+D R++FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRKYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKE 185
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
++S S + GP + + V G+ T T+ D ++YFEQFGT+ V D NT R +GF
Sbjct: 90 SKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGF 149
Query: 148 GFIRFSSHESALKAMLKK-HKIGNRICDVR 176
GFI + S ++ KA+ K H++ ++ +V+
Sbjct: 150 GFITYDSEDAVDKALFKTFHELNGKMVEVK 179
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+F+G ++ D E LRE+F+ YG VV+ +I + R F F+ F +VA+
Sbjct: 2 EADAGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAE 61
Query: 242 SLIGQHVNIKDKKVVVMEATPK 263
+I + I + V +A P+
Sbjct: 62 RVIMEKHMIDGRMVEAKKAVPR 83
>gi|403290028|ref|XP_003936135.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Saimiri
boliviensis boliviensis]
Length = 260
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 117 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 168
>gi|410903806|ref|XP_003965384.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
2 [Takifugu rubripes]
Length = 320
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF ++G + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 58 MFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ ++ D + ++ K +EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 118 EHKLNGKVIDPKKAKAMK--GKEPV-KKIFVGGLSPDTPEEKVREYFGAFGEVESIELPM 174
Query: 225 PF-----REFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
R F F+TF+ + K ++ + NI K + A K E+ + +
Sbjct: 175 ETKTNKRRGFCFITFKEEEPVKCIMEKKFHNIGLSKCEIKVAVSK----EQYQQQQYWGG 230
Query: 279 RNDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
R S S +R GGG + Q GY N
Sbjct: 231 RGGYS----SRARGRGGGWNIFSPNQNWNQGYGN 260
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAK 241
K+FVG L+ D T+ DL+++F YG VVD I R F FV F E +SV K
Sbjct: 56 GKMFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEK 112
>gi|181914|gb|AAA35781.1| DNA-binding protein [Homo sapiens]
Length = 328
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 47 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 106
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 107 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 163
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F+TF+ + K ++
Sbjct: 164 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGLCFITFKEEEPVKKIM 219
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD I R F FV
Sbjct: 63 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 122
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSR 291
F E +SV K + + + K V++ K M ++ + F +P R
Sbjct: 123 LFKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIR 178
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRR 315
+Y GG G ++ + NKRR
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRR 202
>gi|344265339|ref|XP_003404742.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein A/B-like [Loxodonta africana]
Length = 332
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+T+ E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKSNKRRGFVFITYKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL 128
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 129 DQKEHRLDGRVI----DPKKAMAMKKD 151
>gi|196476793|gb|ACG76260.1| heterogeneous nuclear ribonucleoprotein [Amblyomma americanum]
Length = 195
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 19/170 (11%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+ GN ++ ++ D L V GI W + DL+EYF +FG + N+K D
Sbjct: 8 EGEGNGQTNEAAQNGSDGKTNEDERKLFVGGISWDTDNKDLREYFSKFGVVVDVNIKTDP 67
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVRIPESTKIGTEEPVASKVFVGS 197
TG+S+GFGF+ F++ + A++A+LK H + + D P+ K P K+FVG
Sbjct: 68 TTGKSRGFGFVTFNAKD-AIEAVLKATPHTVKGKQID---PKPAKA---RPGIKKIFVGG 120
Query: 198 LTPDLTESDLREHFEYYGAVVDVLIPKPF-------REFAFVTFEL-DSV 239
L D+ E+D++ +FE YG V +V + PF R+FAFVTFE DSV
Sbjct: 121 LESDMPEADIKAYFEMYGPVENVEL--PFDKAKIQRRQFAFVTFEREDSV 168
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA-LKAMLK 164
+ V G+ + D+K YFE +G +E + DK + + F F+ F +S L
Sbjct: 116 IFVGGLESDMPEADIKAYFEMYGPVENVELPFDKAKIQRRQFAFVTFEREDSVDLVCREP 175
Query: 165 KHKIGNRICDV 175
K+GN+ CDV
Sbjct: 176 MQKMGNKGCDV 186
>gi|344246933|gb|EGW03037.1| Heterogeneous nuclear ribonucleoprotein A/B [Cricetulus griseus]
Length = 211
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+T+ E D V K L + + K + A PK+ ++Q
Sbjct: 117 DPKLNKRRGFVFITYKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 168
>gi|414887335|tpg|DAA63349.1| TPA: hypothetical protein ZEAMMB73_769138 [Zea mays]
Length = 342
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 20/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+ YF +FG + A + D+NTGR++GFGF+ F+ A + L K
Sbjct: 8 LFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLDK 67
Query: 166 HKIGNRICDVR--IPE---------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEY 213
H I R+ + + +P ++ IG+ P + K+FVG L ++TE + R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYFEQ 127
Query: 214 YGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G + DV++ +P R F F+T++ D+V K+L + K V V A PK++
Sbjct: 128 FGVITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 185
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T+ + + YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 100 GPGRTRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAV 159
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVA 190
KA+ K H++ ++ +V+ +P+ G P+A
Sbjct: 160 DKALHKNFHELNGKMVEVKRAVPKEQSPG---PIA 191
>gi|345564567|gb|EGX47528.1| hypothetical protein AOL_s00083g337 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D +GRS+GFGF+ F ++ M+K+
Sbjct: 160 MFIGGLNWETTDESLRDYFSQFGEVSECTVMRDGPSGRSRGFGFLTFKDPKTVNIVMVKE 219
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + +I D + IP E+ SK+FVG ++ + +E + + F +G V+D ++
Sbjct: 220 HYLDGKIIDPKRAIPRD-----EQERTSKIFVGGVSQEASEEEFKNFFMQFGRVIDSTLM 274
Query: 222 IPKPF---REFAFVTFELDSVAKSLIGQH--VNIKDKKVVVMEATPKKKMNER 269
I K R F FVTF+ + A L QH + I+DK + V +A P+ ER
Sbjct: 275 IDKETGRPRGFGFVTFD-NEAAVDLALQHPDLRIRDKPIEVKKAQPRGNARER 326
>gi|332027282|gb|EGI67366.1| RNA-binding protein squid [Acromyrmex echinatior]
Length = 306
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+E+F +G +E NVK D NTGRS+GF FI F+ E+ K M
Sbjct: 49 LFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSAG 108
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ +L++ D++ F +G +V+V +P
Sbjct: 109 DHVINNKKVD---PKKAK-----ARHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVEMPF 160
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K V V +ATPK
Sbjct: 161 DKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKATPK 205
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF----ELDSVAKS 242
K+FVG L+ + T+ +LREHF YG + + + P R FAF+ F LD + +
Sbjct: 48 KLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSA 107
Query: 243 LIGQHVNIKDKKV 255
G HV I +KKV
Sbjct: 108 --GDHV-INNKKV 117
>gi|302654951|ref|XP_003019271.1| hypothetical protein TRV_06675 [Trichophyton verrucosum HKI 0517]
gi|291182985|gb|EFE38626.1| hypothetical protein TRV_06675 [Trichophyton verrucosum HKI 0517]
Length = 496
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTVNTVMVKE 60
Query: 166 HKIGNRICDVRI----PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
H + R ++ P+ E+ SK+FVG ++ + TE + ++ F +G VVD
Sbjct: 61 HYLDARSFADQLYKIDPKRAIPRDEQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDAT 120
Query: 222 I------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN 275
+ +P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R
Sbjct: 121 LMIDKDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRL 179
Query: 276 FDR--RNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
R R+DR + R G +G N Q Q
Sbjct: 180 GKRGFRDDR----FKDDRGSGSDSGQQSNTQNQ 208
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 90 SKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEATL 148
>gi|302835614|ref|XP_002949368.1| hypothetical protein VOLCADRAFT_104291 [Volvox carteri f.
nagariensis]
gi|300265195|gb|EFJ49387.1| hypothetical protein VOLCADRAFT_104291 [Volvox carteri f.
nagariensis]
Length = 340
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
SG L + G+ W T+ LKEYF ++G + V D+ T R +GFGFI F+ +
Sbjct: 55 SGGSAGAKLFLGGLSWDTTEEKLKEYFLKYGEVHDVVVMRDRQTRRPRGFGFITFTDPAA 114
Query: 158 ALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
A A + H I R D + G ++P + K+FVG L PD + L+++FE YG V
Sbjct: 115 AQAACAESHTIDGRQIDAKPSVPHGEGGQQPRSKKIFVGGLAPDTEDVHLKQYFEQYGTV 174
Query: 218 VDVLI-----PKPFREFAFVTF-ELDSVAKSL-IGQHVNIKDKKVVVMEATPK 263
V+ L+ R F FVTF E SV K GQ + K+V V ATPK
Sbjct: 175 VEALVMVDHNSGRSRGFGFVTFGEESSVEKVFAAGQMHELGGKQVEVKSATPK 227
>gi|397467431|ref|XP_003805422.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
paniscus]
Length = 261
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 117 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 168
>gi|146197795|dbj|BAF57615.1| DAZ-associated protein [Dugesia japonica]
Length = 296
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ + T+ LK YF +FG + A+V +D TGRS+GFG++R+S +E+ K M K
Sbjct: 17 LFVGGLHQSTTNESLKSYFSKFGDVVEASVMMDHRTGRSRGFGYVRYSDNEAVQKVMSTK 76
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225
H + + D + P + + K+FVG + P+ E LR+ F+ +G + ++ + K
Sbjct: 77 HHLEGKEIDPK-PCNVNMKGRSRRQLKIFVGGIAPEHNEETLRDFFKQFGNITELTLMKD 135
Query: 226 -----FREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATPK 263
R FAFV F+ ++V K LI H+ I +K+V + P+
Sbjct: 136 QSGHRHRGFAFVAFDDEAVVKQLINDHILTIGNKQVEIKPMEPQ 179
>gi|58331869|ref|NP_001011094.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
gi|54038494|gb|AAH84487.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
Length = 343
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+GTL V D N+ RS+GFGF+ +SS +
Sbjct: 7 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEVD 66
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 67 AAMSARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEHHLREYFEQY 125
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M
Sbjct: 126 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKALSKQEM 183
>gi|225713050|gb|ACO12371.1| RNA-binding protein squid [Lepeophtheirus salmonis]
Length = 283
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 18/166 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+P D D+KE+FE FG +E N+K D TGRS+GF F+ F S E KA+ +
Sbjct: 26 LFVGGLPQDAKDCDIKEHFEGFGEIESINIKTDPQTGRSRGFAFVVFKSLEGLEKAVSAE 85
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225
H + ++ V+ ++ + KV+VG L P++++ D++ HF YG V +V +P
Sbjct: 86 HTVKSKKVAVKKAQAKQ--------GKVYVGKLKPEISDEDIKTHFSQYGPVANV--EQP 135
Query: 226 F-------REFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
F + F F+TFE + AK L+ + V +K ++ + + TPK
Sbjct: 136 FDKTKNERKNFCFITFEKEEPAKKLLKEGTVTLKGAELEIKKVTPK 181
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFE-LDSVAKSLIG 245
K+FVG L D + D++EHFE +G + + I P+ R FAFV F+ L+ + K++
Sbjct: 25 KLFVGGLPQDAKDCDIKEHFEGFGEIESINIKTDPQTGRSRGFAFVVFKSLEGLEKAVSA 84
Query: 246 QHV 248
+H
Sbjct: 85 EHT 87
>gi|410903808|ref|XP_003965385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
3 [Takifugu rubripes]
Length = 264
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 34/224 (15%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF ++G + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 58 MFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ ++ D + ++ K +EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 118 EHKLNGKVIDPKKAKAMK--GKEPV-KKIFVGGLSPDTPEEKVREYFGAFGEVESIELPM 174
Query: 225 PF-----REFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
R F F+TF+ + K ++ + NI K + A
Sbjct: 175 ETKTNKRRGFCFITFKEEEPVKCIMEKKFHNIGLSKCEIKVAV----------------- 217
Query: 279 RNDRSRSPMSNSRQYGGGNGYYD---NRQQQQGGYNNKRRRNDY 319
S+ + +GG GY R Q GGY RR +
Sbjct: 218 ----SKEQYQQQQYWGGRGGYSSRARGRGDQSGGYGKSPRRGGH 257
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAK 241
K+FVG L+ D T+ DL+++F YG VVD I R F FV F E +SV K
Sbjct: 57 KMFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEK 112
>gi|410343157|gb|JAA40525.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ + PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKAPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 129 DQKEHRLDGRVIDPKKAMAMKKAPVKKI 156
>gi|195628644|gb|ACG36152.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 384
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K +
Sbjct: 57 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD 116
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P I + P K+F+G L P LTE +L++HF YG VV+ I
Sbjct: 117 HVIDGRTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGNVVEHQIM 176
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F FVTFE + + +I G+ ++ K+V + +A PKK ++ N
Sbjct: 177 LDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSN 232
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIG 245
K+FVG + + TE +HFE YGA+ D +I K R F FVTF SV ++
Sbjct: 55 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE 114
Query: 246 QHVNIKDKKVVVMEATPKKKM 266
I + V V P+++M
Sbjct: 115 DDHVIDGRTVEVKRTVPREEM 135
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W T +L+ YF ++G + V + TGRS+GFGF+ F+ E+ +A+
Sbjct: 21 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVERALENG 80
Query: 165 KHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H + R D + P S KVF+G L P++TE+DLR F YG V++V+I
Sbjct: 81 PHTLDGRTIDPKPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFFSRYGNVMEVVI 140
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
K R F F++FE ++ + +H VNI K+V + +A P+
Sbjct: 141 MYDQEKKKSRGFGFLSFENEAAVERATAEHFVNISGKQVEIKKAEPR 187
>gi|326522138|dbj|BAK04197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
T LVV G+PW L+++ +FG LE V D+ +GRS+GFG++ FSS + +
Sbjct: 2 GTKLVVFGLPWDVDSEGLRKHMAKFGPLEDCVVMKDRLSGRSRGFGYVTFSSADDVKNVL 61
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEP----VASKVFVGSLTPDLTESDLREHFEYYGAVV 218
KH + NR +V+I + +P A+++FVG + ES R HFE +G ++
Sbjct: 62 EFKHFLRNRALEVKIATPREEMKPQPQGTKTATRIFVGRIPQSADESMFRRHFEAFGEII 121
Query: 219 DVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
D+ +PK R F+TF+ S++ + + + V ATPK + +R
Sbjct: 122 DLYMPKEHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTLHVDHATPKDEDTRHPPSR 181
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 88/243 (36%), Gaps = 60/243 (24%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
AT + P G T + V IP + ++ + +FE FG + + + + +G
Sbjct: 77 ATPREEMKPQPQGTKTATRIFVGRIPQSADESMFRRHFEAFGEIIDLYMPKEHGSKGHRG 136
Query: 147 FGFIRFSSHESALKAMLKKHKIGNRIC--------------------------------- 173
GFI F S ES M + H++
Sbjct: 137 IGFITFQSAESVDSIMQESHELDGTTLHVDHATPKDEDTRHPPSRAFQDGGDYGLGYGAY 196
Query: 174 DVRIPESTKIGTEEP---------------------VASKVFVGSLTPDLTESDLREHFE 212
DV I +T G P + K+FVG L + DLR +F
Sbjct: 197 DVYIAATTMFGAVGPPTRYDHQGPAYGRGYSGSPQGIGKKIFVGGLPQGAKKDDLRNYFG 256
Query: 213 YYGAVVDVLIPK-----PFREFAFVTFELDSVAKSLIGQHVNIKDKKVVV-MEATPKKKM 266
+G V DV IP+ R F FVTF + VA ++ + I KV+V + A P+
Sbjct: 257 GFGGVADVFIPRDPKGSGHRGFGFVTFSDEGVADNIADKSHEILGCKVIVDITAPPRGDS 316
Query: 267 NER 269
+ R
Sbjct: 317 SGR 319
>gi|396473500|ref|XP_003839355.1| hypothetical protein LEMA_P030280.1 [Leptosphaeria maculans JN3]
gi|312215924|emb|CBX95876.1| hypothetical protein LEMA_P030280.1 [Leptosphaeria maculans JN3]
Length = 547
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + + G+ W T++ LK YF QFG + V D TGRS+GFGF+ F +
Sbjct: 85 QCRKMFIGGLNWETTEDSLKGYFTQFGEVSECTVMRDSATGRSRGFGFLTFRDPKCVNIV 144
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
M+K+H + +I D P+ E+ SK+FVG ++ + TE D F+ +G VVD
Sbjct: 145 MVKEHYLDGKIID---PKRAIPREEQERTSKIFVGGVSQEATEEDFTAFFKQFGRVVDAT 201
Query: 222 I------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
+ +P R F FVTF+ D+ + + + I K + V A P+ M +
Sbjct: 202 LMMDKETGRP-RGFGFVTFDGDAAVDATLKGPLQILGKPIEVKRAQPRGNMRD 253
>gi|413926094|gb|AFW66026.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 443
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K +
Sbjct: 116 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD 175
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P I + P K+F+G L P LTE +L++HF YG VV+ I
Sbjct: 176 HVIDGRTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGNVVEHQIM 235
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F F+TFE + + +I G+ ++ K+V + +A PKK ++ N
Sbjct: 236 LDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSN 291
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIG 245
K+FVG + + TE +HFE YGA+ D +I K R F FVTF SV ++
Sbjct: 114 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE 173
Query: 246 QHVNIKDKKVVVMEATPKKKM 266
I + V V P+++M
Sbjct: 174 DDHVIDGRTVEVKRTVPREEM 194
>gi|307211208|gb|EFN87408.1| RNA-binding protein squid [Harpegnathos saltator]
Length = 331
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+++F +G +E NVK D NTGRS+GF FI F+ E+ K M
Sbjct: 50 LFVGGLSWETTDKELRDHFNTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSAG 109
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ +L++ D++ F +G +V+V +P
Sbjct: 110 DHVINNKKVD---PKKAK-----ARHGKIFVGGLSTELSDDDIKHFFSQFGNIVEVEMPF 161
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K V V +ATPK
Sbjct: 162 DKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKATPK 206
>gi|425766220|gb|EKV04844.1| Heterogeneous nuclear ribonucleoprotein HRP1 [Penicillium digitatum
PHI26]
gi|425779142|gb|EKV17231.1| Heterogeneous nuclear ribonucleoprotein HRP1 [Penicillium digitatum
Pd1]
Length = 447
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L++YF QFG ++ V D TGRS+GFGF+ F ++ M+K+H + +I D P+
Sbjct: 13 LRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDAKTVNTVMVKEHYLDGKIID---PK 69
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVT 233
E+ SK+FVG ++ + TE D ++ F +G VVD + +P R F FVT
Sbjct: 70 RAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMMDKDTGRP-RGFGFVT 128
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
F+ D+ + + + + I K + V +A P+ + E D R
Sbjct: 129 FDGDAAVEKALSRPLEILGKPIEVKKAQPRGNLRENNDQR 168
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++F QFG + A + +DK+TGR +GFGF+ F + KA
Sbjct: 79 KTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMMDKDTGRPRGFGFVTFDGDAAVEKA 138
Query: 162 MLKKHKIGNRICDVR 176
+ + +I + +V+
Sbjct: 139 LSRPLEILGKPIEVK 153
>gi|345777448|ref|XP_003431598.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Canis lupus
familiaris]
Length = 353
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 87 ATQSKRSYPDNSGPV--QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
A + + YP +G + V G+ W + DLK+YF +FG + +K+D NTGRS
Sbjct: 101 ACRKRNLYPGRAGTCLYHLRKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS 160
Query: 145 KGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLT 203
+GFGFI F S K + K+H++ R+ D P+ ++PV K+FVG L P+ T
Sbjct: 161 RGFGFILFKDAASVEKVLDQKEHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEAT 216
Query: 204 ESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
E +RE+F +G + + +P R F F+TF+ + K ++
Sbjct: 217 EEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVL 262
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
PV+ + V G+ T+ ++EYF +FG +E + +D + + +GF FI F E
Sbjct: 202 PVKK--IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 259
Query: 160 KAMLKK-HKI 168
K + KK H I
Sbjct: 260 KVLEKKFHTI 269
>gi|223648642|gb|ACN11079.1| Heterogeneous nuclear ribonucleoprotein D-like [Salmo salar]
Length = 301
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL +Y +FG + +K D TGRS+GFGF+ F ES + + LK
Sbjct: 32 MFIGGLSWDTSKTDLTDYLSKFGEVLDCTIKTDLMTGRSRGFGFVLFRDSESVDRVLELK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD E ++RE+F +G + + +P
Sbjct: 92 EHKLDGKLIDPKRAKAMK-GKEPP--KKVFVGGLSPDTPEEEIREYFGAFGDIDSIELPM 148
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F FVT+ E V K L ++ + K + A PK+ ++Q
Sbjct: 149 DTKTNERRGFCFVTYCEETPVQKLLECRYHQVGSGKCEIKVAQPKEVYRQQQ 200
>gi|402220502|gb|EJU00573.1| hypothetical protein DACRYDRAFT_53825 [Dacryopinax sp. DJM-731 SS1]
Length = 382
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W TD L+ YFEQFG ++ + D GRS+GF F+ F + M+++
Sbjct: 1 MFVGGLNWDTTDESLRRYFEQFGEVDACTIMRDAG-GRSRGFAFLTFREPAAVNAVMVRE 59
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + +I D P+ E K+F+G L P +T +R+ F +GAV+D V++
Sbjct: 60 HHLDGKIID---PKRAIPRLEHQKTQKLFIGGLAPSVTSESMRDFFSQFGAVIDSTVMVD 116
Query: 224 KP---FREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATPKKKMNERQDN 272
+ + F FVTFE A+ L+GQ + +I K + V A P+ + + DN
Sbjct: 117 RESGRSKGFGFVTFEDGQGAEKLVGQGILSIDGKPIEVKIAQPRGAIKKDNDN 169
>gi|67972636|ref|NP_997752.2| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|42542905|gb|AAH66454.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|67677894|gb|AAH97183.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F K + +K
Sbjct: 71 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQK 130
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H++ R D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 131 EHRLDGRQID---PKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAFGEIETIELPM 186
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 187 DPKSNKRRGFVFITFKEEEAVKKIL 211
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAK 241
E A K+FVG L+ D ++ DL+++F +G V D I P R F F+ F+ S
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 124
Query: 242 SLIGQHVN------IKDKKVVVMEATPKKKM 266
++ Q + I KK + M+ P KK+
Sbjct: 125 KVLAQKEHRLDGRQIDPKKAMAMKKEPVKKI 155
>gi|449443534|ref|XP_004139532.1| PREDICTED: uncharacterized protein LOC101217028 [Cucumis sativus]
gi|449505564|ref|XP_004162509.1| PREDICTED: uncharacterized LOC101217028 [Cucumis sativus]
Length = 477
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 21/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L+EYF FG + + D+ TGR++GFGF+ F+ +A + +L+K
Sbjct: 6 LFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARVVLEK 65
Query: 166 HKIGNRICDVR--IPESTK----------IGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P + +G+ P + K+FVG L +TESD +++F+
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFD 125
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+G +VDV++ +P R F F+T+E +SV K L + K V V A PK+
Sbjct: 126 QFGTIVDVVVMYDHNTQRP-RGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKES 184
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S ES
Sbjct: 99 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESV 158
Query: 159 LKAMLKK-HKIGNRICDVR 176
K + K H++ ++ +V+
Sbjct: 159 EKVLYKTFHELNGKMVEVK 177
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSLIG 245
K+F+G ++ D E LRE+F +G VV+V+I + R F FV F + + A+ ++
Sbjct: 5 KLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARVVLE 64
Query: 246 QHVNIKDKKVVVMEATPKKKMN 267
+HV I + V +A P+ N
Sbjct: 65 KHV-IDGRTVEAKKAVPRDDQN 85
>gi|297676866|ref|XP_002816343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pongo
abelii]
Length = 259
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 13/172 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K+ V A PK+ ++Q
Sbjct: 117 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKIKV--AQPKEVYQQQQ 166
>gi|239051430|ref|NP_001131946.2| uncharacterized protein LOC100193339 [Zea mays]
gi|194695014|gb|ACF81591.1| unknown [Zea mays]
gi|223947685|gb|ACN27926.1| unknown [Zea mays]
gi|238908636|gb|ACF80580.2| unknown [Zea mays]
gi|413926096|gb|AFW66028.1| heterogeneous nuclear ribonucleoprotein A3 isoform 1 [Zea mays]
gi|413926097|gb|AFW66029.1| heterogeneous nuclear ribonucleoprotein A3 isoform 2 [Zea mays]
gi|413926098|gb|AFW66030.1| heterogeneous nuclear ribonucleoprotein A3 isoform 3 [Zea mays]
Length = 384
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K +
Sbjct: 57 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD 116
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P I + P K+F+G L P LTE +L++HF YG VV+ I
Sbjct: 117 HVIDGRTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGNVVEHQIM 176
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F F+TFE + + +I G+ ++ K+V + +A PKK ++ N
Sbjct: 177 LDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSN 232
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIG 245
K+FVG + + TE +HFE YGA+ D +I K R F FVTF SV ++
Sbjct: 55 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE 114
Query: 246 QHVNIKDKKVVVMEATPKKKM 266
I + V V P+++M
Sbjct: 115 DDHVIDGRTVEVKRTVPREEM 135
>gi|224284234|gb|ACN39853.1| unknown [Picea sitchensis]
Length = 473
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T++ LK+YF++FG + A + D+ T R++GFGF+ F+ A + +L K
Sbjct: 8 LFIGGISWETTEDRLKDYFKRFGEVVEAVIMKDRTTRRARGFGFVVFADPAIADRVVLDK 67
Query: 166 HKIGNRICDVR--IP--------ESTKIGTEEPV---ASKVFVGSLTPDLTESDLREHFE 212
H I R + + IP ++ I P K+FVG L P +TE+D R++FE
Sbjct: 68 HTIDGRTVEAKKAIPRDDQQHMNRNSNIAHAPPSQVRTKKIFVGGLAPTVTENDFRKYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ D+V + L ++ K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHSTQRP-RGFGFITYDSEDAVDQVLQKTFHDLNGKMVEVKRAVPKE 185
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V+ + V G+ T T+ND ++YFEQFGT+ V D +T R +GFGFI + S E A+
Sbjct: 103 VRTKKIFVGGLAPTVTENDFRKYFEQFGTITDVVVMYDHSTQRPRGFGFITYDS-EDAVD 161
Query: 161 AMLKK--HKIGNRICDVR 176
+L+K H + ++ +V+
Sbjct: 162 QVLQKTFHDLNGKMVEVK 179
>gi|5052976|gb|AAD38787.1|AF153444_1 hnRNP A/B related protein, partial [Felis catus]
Length = 279
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+ NTGRSKGFGFI F S K + K
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQK 125
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 126 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 181
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K + A PK+ ++Q
Sbjct: 182 DPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQ 233
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDV---LIPKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD ++P R F F+ F+ + + ++
Sbjct: 63 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVL 122
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 123 DQKEHRLDGRVI----DPKKAMAMKKD 145
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K +
Sbjct: 39 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD 98
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P I + P K+F+G L P LTE +L++HF YG VV+ I
Sbjct: 99 HVIDGRTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGNVVEHQIM 158
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F F+TFE + + +I G+ ++ K+V + +A PKK ++ N
Sbjct: 159 LDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSN 214
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI 244
+ K+FVG + + TE +HFE YGA+ D +I K R F FVTF SV ++
Sbjct: 36 SGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL 95
Query: 245 GQHVNIKDKKVVVMEATPKKKM 266
I + V V P+++M
Sbjct: 96 EDDHVIDGRTVEVKRTVPREEM 117
>gi|159163866|pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 8/99 (8%)
Query: 83 GNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
G+S ++ KR+ VQ T DL+VLG+PW T+ DLKEYF FG + VK D T
Sbjct: 1 GSSGSSGVKRA-------VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT 53
Query: 142 GRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
G SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 54 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92
>gi|550458|gb|AAA68014.1| ribonucleoprotein [Gallus gallus]
gi|1095499|prf||2109229A RNA-binding protein
Length = 285
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGF F S K + K
Sbjct: 75 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFRLFKEPGSVEKVLEQK 134
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 135 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 190
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F++F E D V K L + N+ K + A PK+ ++Q
Sbjct: 191 DPKTNKRRGFVFISFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQ 242
>gi|169613076|ref|XP_001799955.1| hypothetical protein SNOG_09668 [Phaeosphaeria nodorum SN15]
gi|160702644|gb|EAT82933.2| hypothetical protein SNOG_09668 [Phaeosphaeria nodorum SN15]
Length = 453
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--I 177
LK+YF QFG + V D TGRS+GFGF+ F + M+K+H + +I D + I
Sbjct: 42 LKDYFSQFGEVSECTVMRDSATGRSRGFGFLTFRDPKCVNTVMVKEHYLDGKIIDPKRAI 101
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAF 231
P E+ SK+FVG ++ + TE D F+ +G VVD + +P R F F
Sbjct: 102 PRE-----EQERTSKIFVGGVSQEATEEDFTNFFKSFGRVVDATLMMDKETGRP-RGFGF 155
Query: 232 VTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRN 280
VTF+ D+ + + Q + I K + V A P+ M + F R N
Sbjct: 156 VTFDGDAAVDATLRQPLQILGKPIEVKRAQPRGNMRDEDGGDKKFGRNN 204
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D +F+ FG + A + +DK TGR +GFGF+ F ++A+ A
Sbjct: 108 RTSKIFVGGVSQEATEEDFTNFFKSFGRVVDATLMMDKETGRPRGFGFVTFDG-DAAVDA 166
Query: 162 MLKK 165
L++
Sbjct: 167 TLRQ 170
>gi|76096336|ref|NP_001028868.1| heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
gi|123783017|sp|Q3SWU3.1|HNRDL_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|74356265|gb|AAI04684.1| Heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
Length = 322
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+S P + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 103
Query: 157 SALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G
Sbjct: 104 SVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFG 160
Query: 216 AVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
>gi|157110304|ref|XP_001651043.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878767|gb|EAT42992.1| AAEL005515-PE [Aedes aegypti]
Length = 285
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNT-----DLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
+ +GN +Q + N N L V G+ W +D +LKE+F Q+G +E N
Sbjct: 7 EMNGNGQESQDQNGGDQNGAESSNVRDDDRKLFVGGLSWETSDKELKEHFGQYGEIESIN 66
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKV 193
VK D NTGRS+GF FI + S +S K + H I N+ D P+ K K+
Sbjct: 67 VKTDPNTGRSRGFAFIVYKSADSIDKVVAAGDHVINNKKVD---PKKAK-----ARHGKI 118
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-H 247
FVG LT ++++ +++ F +G +V+V +P + F F+TF+ + V L+
Sbjct: 119 FVGGLTTEISDEEIKTFFGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPK 178
Query: 248 VNIKDKKVVVMEATPK 263
I K+V V +ATPK
Sbjct: 179 QTISGKEVDVKKATPK 194
>gi|296193572|ref|XP_002744572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Callithrix jacchus]
Length = 256
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 10/144 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPM 116
Query: 224 ----KPFREFAFVTFELDSVAKSL 243
R F F+TF+ SV K L
Sbjct: 117 HPKLNKRRGFVFITFKERSVKKVL 140
>gi|213511366|ref|NP_001133116.1| heterogeneous nuclear ribonucleoprotein D-like [Salmo salar]
gi|197631983|gb|ACH70715.1| heterogeneous nuclear ribonucleoprotein D-like [Salmo salar]
gi|221221618|gb|ACM09470.1| Heterogeneous nuclear ribonucleoprotein D-like [Salmo salar]
Length = 283
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL +Y +FG + +K D TGRS+GFGF+ F ES + + LK
Sbjct: 32 MFIGGLSWDTSKTDLTDYLSKFGEVLDCTIKTDLMTGRSRGFGFVLFRDSESVDRVLELK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD E ++RE+F +G + + +P
Sbjct: 92 EHKLDGKLIDPKRAKAMK-GKEPP--KKVFVGGLSPDTPEEEIREYFGAFGDIDSIELPM 148
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F FVT+ E V K L ++ + K + A PK+ ++Q
Sbjct: 149 DTKTNERRGFCFVTYCEETPVQKLLECRYHQVGSGKCEIKVAQPKEVYRQQQ 200
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 14/190 (7%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S+A +++ S P N N+ + V G+ W T+ L++YFE +G + + DK+TG
Sbjct: 33 SNAVRAEHSDPGNQN--NNSKIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHP 90
Query: 145 KGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPES---TKIGTEEPVASKVFVGSLT 199
+GFGF+ F ESA +A K+H++ R + + +P++ T+ +P K+FVG L
Sbjct: 91 RGFGFVTFEKEESADRAATKRHELDGRQVEAKKAVPKAEYITRSQVTKPT-RKIFVGGLP 149
Query: 200 PDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLIGQHVN-IKDK 253
TE D E+FE G VV+ I R F FVTF + + + + Q + IK K
Sbjct: 150 LSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGK 209
Query: 254 KVVVMEATPK 263
V V +A PK
Sbjct: 210 IVEVKKAEPK 219
>gi|307180208|gb|EFN68241.1| RNA-binding protein squid [Camponotus floridanus]
Length = 296
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W TD +L+E+F +G +E NVK D NTGRS+GF FI F+ E+ K M
Sbjct: 51 LFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSAG 110
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ +L++ D++ F +G +V+V +P
Sbjct: 111 DHVINNKKVD---PKKAK-----ARHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVEMPF 162
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K V V +ATPK
Sbjct: 163 DKTKNQRKGFCFITFESEQVVNELLKTPKQTISGKAVDVKKATPK 207
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTF----ELDSVAKS 242
K+FVG L+ + T+ +LREHF YG + + + P R FAF+ F LD + +
Sbjct: 50 KLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIMSA 109
Query: 243 LIGQHVNIKDKKV 255
G HV I +KKV
Sbjct: 110 --GDHV-INNKKV 119
>gi|157110296|ref|XP_001651039.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|157110300|ref|XP_001651041.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878763|gb|EAT42988.1| AAEL005515-PG [Aedes aegypti]
gi|108878765|gb|EAT42990.1| AAEL005515-PC [Aedes aegypti]
Length = 300
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K +
Sbjct: 38 LFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAAG 97
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 98 DHVINNKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVEMPF 149
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 150 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 194
>gi|432878673|ref|XP_004073373.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oryzias latipes]
Length = 330
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F S K + K
Sbjct: 74 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVDKVLEQK 133
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R D + + K + + K+FVG L PDL++ ++ E+F +G + + +P+
Sbjct: 134 EHRLDGRQIDPKRAMAMK----KEIVKKIFVGGLKPDLSKEEIEEYFGAFGEIETIELPQ 189
Query: 225 -----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+T+ E SV K L ++ + K + A PK+ ++Q
Sbjct: 190 DPKTEKRRGFVFITYKEEPSVKKVLEKKYHTVGGSKCEIKIAQPKEVYMQQQ 241
>gi|1209409|emb|CAA90716.1| hnRNP protein [Chironomus tentans]
Length = 297
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W T+ +L+++F Q+G ++ NVK D TGRS+GF FI + S +S K +
Sbjct: 42 LFVGGLSWETTEKELRDHFGQYGEIDSINVKTDPTTGRSRGFAFIVYKSADSIDKVVAAG 101
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K T K+FVG L P++++ ++R +F +G +V++ +P
Sbjct: 102 DHIINNKKVD---PKKAKART-----GKIFVGGLIPEISDDEIRAYFAQFGNIVEMEMPF 153
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ ++V L+ I K+V V +ATPK
Sbjct: 154 DKQKNQRKAFCFITFDSETVVNELLKTPKQTISGKEVDVKKATPK 198
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVT 233
+S++IG ++ K+FVG L+ + TE +LR+HF YG + + + P R FAF+
Sbjct: 30 DSSEIGRDDD--RKLFVGGLSWETTEKELRDHFGQYGEIDSINVKTDPTTGRSRGFAFIV 87
Query: 234 FE-LDSVAKSL-IGQHVNIKDKKV 255
++ DS+ K + G H+ I +KKV
Sbjct: 88 YKSADSIDKVVAAGDHI-INNKKV 110
>gi|410903804|ref|XP_003965383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
1 [Takifugu rubripes]
Length = 314
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF ++G + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 58 MFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ ++ D + ++ K +EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 118 EHKLNGKVIDPKKAKAMK--GKEPV-KKIFVGGLSPDTPEEKVREYFGAFGEVESIELPM 174
Query: 225 PF-----REFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 175 ETKTNKRRGFCFITFKEEEPVKCIM 199
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAK 241
K+FVG L+ D T+ DL+++F YG VVD I R F FV F E +SV K
Sbjct: 56 GKMFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEK 112
>gi|242064522|ref|XP_002453550.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
gi|241933381|gb|EES06526.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
Length = 391
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K +
Sbjct: 58 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD 117
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+F+G L P LTE +L++HF YG VV+ I
Sbjct: 118 HVIDGRTVEVKRTVPREEMTTKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGKVVEHQIM 177
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F FVTFE + + +I G+ ++ K+V + +A PKK ++ N
Sbjct: 178 LDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSN 233
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + + G+P + T+++LK++F +G + + +D +TGRS+GFGF+ F S +S
Sbjct: 141 GP-KTRKIFIGGLPPSLTEDELKDHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDSV 199
Query: 159 LKAML--KKHKIGNRICDVRIPESTKIGTE 186
+ + + +G + +++ E K G++
Sbjct: 200 ERVISEGRMRDLGGKQVEIKKAEPKKHGSD 229
>gi|50548677|ref|XP_501808.1| YALI0C13860p [Yarrowia lipolytica]
gi|49647675|emb|CAG82118.1| YALI0C13860p [Yarrowia lipolytica CLIB122]
Length = 367
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L YF QFG + V D +G+S+GFGF+ F + M K+
Sbjct: 1 MFIGGLNWETTDESLTNYFAQFGEVLECTVMRDHFSGKSRGFGFLTFRDPKCVNAVMAKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + +I D P+ E+ SK+FVG + D+TE D ++ FE YG V+D ++I
Sbjct: 61 HYLDGKIID---PKRAIPREEQDKTSKIFVGGVGSDVTEEDYKQFFEQYGTVIDAQLMID 117
Query: 224 KPF---REFAFVTFELDSVAKSLIGQHVNI-KDKKVVVMEATPKKK 265
K R F FVTF+ + +++ Q + I KDK + V A + K
Sbjct: 118 KDSGRPRGFGFVTFDSEQAMNTILAQPLLILKDKPIEVKRAENRSK 163
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++FEQ+GT+ A + +DK++GR +GFGF+ F S E A+
Sbjct: 81 KTSKIFVGGVGSDVTEEDYKQFFEQYGTVIDAQLMIDKDSGRPRGFGFVTFDS-EQAMNT 139
Query: 162 MLKK 165
+L +
Sbjct: 140 ILAQ 143
>gi|133258|sp|P17130.1|ROA1_XENLA RecName: Full=Heterogeneous nuclear ribonucleoproteins A1 homolog;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|214239|gb|AAA49741.1| ribonucleoprotein A1a [Xenopus laevis]
Length = 365
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 30/215 (13%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+GTL V D N+ RS+GFGF+ + S +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEDHLREYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEM-- 186
Query: 269 RQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNR 303
+ +S S++ GG+G Y +R
Sbjct: 187 ----------------ASVSGSQRERGGSGNYGSR 205
>gi|357156001|ref|XP_003577309.1| PREDICTED: uncharacterized protein LOC100846541 [Brachypodium
distachyon]
Length = 463
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L+EYFE++G + A + D+ TGR++GFGFI F+ A + +++K
Sbjct: 8 LFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIMEK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P + G+ P + K+FVG L + E+D R +FE
Sbjct: 68 HMIDGRMVEAKKAVPRDDQQALSKSGGSTHGSPGPSRTKKIFVGGLASTVNEADFRTYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V K+L + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKALFKTFHELNGKMVEVKRAVPKE 185
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
++S S + GP + + V G+ T + D + YFEQFGT+ V D NT R +GF
Sbjct: 90 SKSGGSTHGSPGPSRTKKIFVGGLASTVNEADFRTYFEQFGTITDVVVMYDHNTQRPRGF 149
Query: 148 GFIRFSSHESALKAMLKK-HKIGNRICDVR 176
GFI + S E+ KA+ K H++ ++ +V+
Sbjct: 150 GFITYDSEEAVDKALFKTFHELNGKMVEVK 179
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+F+G ++ D E LRE+FE YG VV+ +I + R F F+ F +VA+
Sbjct: 2 EADAGKLFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAE 61
Query: 242 SLIGQHVNIKDKKVVVMEATPK 263
+I + I + V +A P+
Sbjct: 62 RVIMEKHMIDGRMVEAKKAVPR 83
>gi|148237229|ref|NP_001080689.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus laevis]
gi|28374304|gb|AAH45260.1| Hnrpa1 protein [Xenopus laevis]
Length = 399
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+G L V D N+ RS+GFGF+ +SS +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGALTDCVVMRDPNSKRSRGFGFVTYSSTDEVD 69
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEHHLREYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M+
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKALSKQEMS 187
>gi|157110294|ref|XP_001651038.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878762|gb|EAT42987.1| AAEL005515-PF [Aedes aegypti]
Length = 325
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K +
Sbjct: 38 LFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAAG 97
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 98 DHVINNKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVEMPF 149
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 150 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 194
>gi|347966814|ref|XP_321133.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|347966816|ref|XP_003435970.1| AGAP001930-PB [Anopheles gambiae str. PEST]
gi|333469887|gb|EAA00972.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|333469888|gb|EGK97443.1| AGAP001930-PB [Anopheles gambiae str. PEST]
Length = 412
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W + +L+ YF ++G + V + TGRS+GFGF+ F+ E+ +A+
Sbjct: 20 LFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVERALENG 79
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R K P KVF+G L P++TE+DLR F YG V++
Sbjct: 80 PHTLDGRTIDPKPCNPRSQHKPKRTGGYP---KVFLGGLPPNITETDLRSFFCRYGTVME 136
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPKKKMNERQDNR 273
V+I K R F F++FE +S + H V+I K+V V +A P R N+
Sbjct: 137 VVIMYDQEKKKSRGFGFLSFENESAVERATTDHFVHISGKQVEVKKAEP------RDGNQ 190
Query: 274 NNFDRRNDRS-------RSPMSNSRQYGG 295
NN + N S PM N Q GG
Sbjct: 191 NNSNSMNTDSYQWGSPQAPPMGNG-QMGG 218
>gi|417410446|gb|JAA51696.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 404
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 134 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 193
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 194 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 250
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 251 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 296
>gi|327272896|ref|XP_003221220.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Anolis
carolinensis]
Length = 311
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 42 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 101
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 102 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGGFGEIENIELPM 158
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
R F F+T+ + + V K L ++ I K + A PK
Sbjct: 159 DTKTNERRGFCFITYSDEEPVKKLLESRYHQIGSGKCEIKVAQPK 203
>gi|157110298|ref|XP_001651040.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|157110302|ref|XP_001651042.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878764|gb|EAT42989.1| AAEL005515-PD [Aedes aegypti]
gi|108878766|gb|EAT42991.1| AAEL005515-PA [Aedes aegypti]
Length = 280
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K +
Sbjct: 38 LFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAAG 97
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 98 DHVINNKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVEMPF 149
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 150 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 194
>gi|71896741|ref|NP_001026313.1| heterogeneous nuclear ribonucleoprotein D-like [Gallus gallus]
gi|82233707|sp|Q5ZI72.1|HNRDL_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|53136484|emb|CAG32571.1| hypothetical protein RCJMB04_29l7 [Gallus gallus]
Length = 301
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 92 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 148
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 149 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 194
>gi|115445085|ref|NP_001046322.1| Os02g0221500 [Oryza sativa Japonica Group]
gi|46806500|dbj|BAD17624.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806519|dbj|BAD17632.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|113535853|dbj|BAF08236.1| Os02g0221500 [Oryza sativa Japonica Group]
Length = 397
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
A G++S + D+SG + V G+ W T+ ++FE++G + + + DK+
Sbjct: 48 AYGDASGDDGRAPGGDSSGKI-----FVGGVAWETTEESFSKHFEKYGAITDSVIMKDKH 102
Query: 141 TGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSL 198
T +GFGF+ FS K + +H I R +V+ +P + P K+FVG L
Sbjct: 103 TKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGL 162
Query: 199 TPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIK 251
LTE +LREHF YG +V+ I R F FVTFE + + +I G+ ++
Sbjct: 163 PSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLG 222
Query: 252 DKKVVVMEATPKK 264
K+V + +A PKK
Sbjct: 223 GKQVEIKKAEPKK 235
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-- 163
+ V G+P + T+++L+E+F +G + + +D +TGRS+GFGF+ F S +S + +
Sbjct: 157 IFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEG 216
Query: 164 KKHKIGNRICDVRIPESTKIG 184
+ +G + +++ E K G
Sbjct: 217 RMRDLGGKQVEIKKAEPKKHG 237
>gi|357602467|gb|EHJ63411.1| squid protein-like proteinue [Danaus plexippus]
Length = 288
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W TD +L+E+F +G +E NVK D NTGRS+GF FI F + +S K M
Sbjct: 44 LFVGGLSWETTDKELREHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 103
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG L+ ++++ +++ F +G +++V +P
Sbjct: 104 DHTINNKKVD---PKKAKA-----RHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPF 155
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K+V V ATPK
Sbjct: 156 DKTKNQRKGFCFITFESEQVVNELLKTPKQTIAGKEVDVKRATPK 200
>gi|214241|gb|AAA49742.1| ribonucleoprotein A1b [Xenopus laevis]
Length = 351
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 30/215 (13%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+GTL V D N+ RS+GFGF+ + S +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEDHLREYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEM-- 186
Query: 269 RQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNR 303
+ +S S++ GG+G Y +R
Sbjct: 187 ----------------ASVSGSQRERGGSGNYGSR 205
>gi|296196170|ref|XP_002745712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Callithrix jacchus]
gi|390460703|ref|XP_003732527.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Callithrix jacchus]
Length = 420
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|148907387|gb|ABR16827.1| unknown [Picea sitchensis]
Length = 432
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 19/177 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + GI W T+ LKEYF+ +G + + DK TGR++GFGFI FS + + + K
Sbjct: 8 VFIGGISWETTEETLKEYFKVYGDVVETVIMRDKMTGRARGFGFIGFSEPTAVDRVLQDK 67
Query: 166 HKIGNRICDVR--IPE------STKIGT---EEPVASKVFVGSLTPDLTESDLREHFEYY 214
H I R +++ +P + K G+ P K+FVG L P +TE D + +FE +
Sbjct: 68 HTIDGRQVELKRAVPREEHQRNAQKSGSNVGAGPRTKKIFVGGLAPTVTEDDFKGYFEQF 127
Query: 215 GAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
G + DV++ +P R F F+TF+ ++V K ++ + DK V V A PK+
Sbjct: 128 GTITDVVVMYDHISQRP-RGFGFITFDSEEAVDKVVMKNFHELHDKTVEVKRALPKE 183
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+GP + + V G+ T T++D K YFEQFGT+ V D + R +GFGFI F S E
Sbjct: 98 GAGP-RTKKIFVGGLAPTVTEDDFKGYFEQFGTITDVVVMYDHISQRPRGFGFITFDSEE 156
Query: 157 SALKAMLKK-HKIGNRICDVR 176
+ K ++K H++ ++ +V+
Sbjct: 157 AVDKVVMKNFHELHDKTVEVK 177
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
KVF+G ++ + TE L+E+F+ YG VV+ +I + R F F+ F + ++
Sbjct: 7 KVFIGGISWETTEETLKEYFKVYGDVVETVIMRDKMTGRARGFGFIGFSEPTAVDRVLQD 66
Query: 247 HVNIKDKKVVVMEATPKKK 265
I ++V + A P+++
Sbjct: 67 KHTIDGRQVELKRAVPREE 85
>gi|294925396|ref|XP_002778913.1| RNA-binding protein squid, putative [Perkinsus marinus ATCC 50983]
gi|239887759|gb|EER10708.1| RNA-binding protein squid, putative [Perkinsus marinus ATCC 50983]
Length = 297
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 18/184 (9%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
S +S P +GP + + G+P+T T+ D+ ++F QFG + +K+DK TGRS+
Sbjct: 34 SPRRSSAERPIRTGP----KIFIGGVPFTATEEDVADFFSQFGPVASVEIKMDKVTGRSR 89
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTES 205
GFGF+ F + E + AM +K G+ + R +I E A +VFVG + P ++
Sbjct: 90 GFGFVVFETAEGKMGAMRRK---GDLVLHNR-----QINIGETTADRVFVGGVPPQMSNE 141
Query: 206 DLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI----GQHVNIKDKKVVVMEAT 261
+ HF YG V D+ P P + + FV F S A++ + HV I +V V +A
Sbjct: 142 AIATHFSKYGPVQDIEGP-PNKNYLFVVFTDPSGARNCLMDNPENHV-IDGVRVDVKKAQ 199
Query: 262 PKKK 265
P+ +
Sbjct: 200 PRNQ 203
>gi|147900728|ref|NP_001081282.1| heterogeneous nuclear ribonucleoproteins A1 homolog [Xenopus
laevis]
gi|47938744|gb|AAH72090.1| LOC397751 protein [Xenopus laevis]
Length = 365
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+GTL V D N+ RS+GFGF+ + S +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEDHLREYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKALSKQEM 186
>gi|350540024|ref|NP_001232117.1| heterogeneous nuclear ribonucleoprotein D-like [Taeniopygia
guttata]
gi|197129483|gb|ACH45981.1| putative heterogeneous nuclear ribonucleoprotein D-like variant 1
[Taeniopygia guttata]
Length = 301
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 92 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 148
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 149 DTKTNXRRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 194
>gi|74001737|ref|XP_858404.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform
12 [Canis lupus familiaris]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|355687288|gb|EHH25872.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Macaca mulatta]
Length = 309
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 39 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 98
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 99 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 155
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 156 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 201
>gi|440898654|gb|ELR50102.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Bos grunniens mutus]
Length = 356
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 86 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 145
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 146 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 202
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 203 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 248
>gi|349604934|gb|AEQ00343.1| Heteroproteinous nuclear ribonucleoprotein D-like-like protein,
partial [Equus caballus]
Length = 297
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 27 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 86
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 87 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 143
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 144 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 189
>gi|395834185|ref|XP_003790092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Otolemur garnettii]
gi|395834187|ref|XP_003790093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Otolemur garnettii]
Length = 418
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|38327502|gb|AAR17782.1| CArG binding factor [Homo sapiens]
Length = 298
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 28 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 87
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 88 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 144
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 145 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 190
>gi|426344793|ref|XP_004038938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Gorilla gorilla gorilla]
gi|426344795|ref|XP_004038939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Gorilla gorilla gorilla]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|344284837|ref|XP_003414171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Loxodonta africana]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|413943841|gb|AFW76490.1| hypothetical protein ZEAMMB73_698498 [Zea mays]
Length = 413
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 9/178 (5%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D+SG + + V G+ W T+ ++F+++G + + + DK+T +GFGF+ FS
Sbjct: 92 DSSGGDASGKIFVGGVAWETTEETFTKHFQKYGAITDSVIMKDKHTRMPRGFGFVTFSDP 151
Query: 156 ESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
+ + +H I R +V+ +P+ + P K+FVG + P LTE L+EHF
Sbjct: 152 SVLDRVLEDEHVIDGRTVEVKRTVPKEEMSSKDGPKTKKIFVGGIPPSLTEDKLKEHFSS 211
Query: 214 YGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
YG VV+ I R F FVTFE + + ++ G+ ++ K+V + +A PKK
Sbjct: 212 YGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKK 269
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T K GP + + V GIP + T++ LKE+F +G + + +D +TGRS+GF
Sbjct: 174 TVPKEEMSSKDGP-KTKKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGF 232
Query: 148 GFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GF+ F S ++ + M + H +G + +++ E K G
Sbjct: 233 GFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPG 271
>gi|226503497|ref|NP_001145761.1| uncharacterized protein LOC100279268 [Zea mays]
gi|219884331|gb|ACL52540.1| unknown [Zea mays]
Length = 413
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 9/178 (5%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D+SG + + V G+ W T+ ++F+++G + + + DK+T +GFGF+ FS
Sbjct: 92 DSSGGDASGKIFVGGVAWETTEETFTKHFQKYGAITDSVIMKDKHTRMPRGFGFVTFSDP 151
Query: 156 ESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
+ + +H I R +V+ +P+ + P K+FVG + P LTE L+EHF
Sbjct: 152 SVLDRVLEDEHVIDGRTVEVKRTVPKEEMSSKDGPKTKKIFVGGIPPSLTEDKLKEHFSS 211
Query: 214 YGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
YG VV+ I R F FVTFE + + ++ G+ ++ K+V + +A PKK
Sbjct: 212 YGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKK 269
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T K GP + + V GIP + T++ LKE+F +G + + +D +TGRS+GF
Sbjct: 174 TVPKEEMSSKDGP-KTKKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGF 232
Query: 148 GFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GF+ F S ++ + M + H +G + +++ E K G
Sbjct: 233 GFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPG 271
>gi|39644771|gb|AAH07392.2| HNRPDL protein, partial [Homo sapiens]
Length = 415
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 145 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 204
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 205 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 261
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 262 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 307
>gi|402869385|ref|XP_003898743.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Papio anubis]
gi|402869387|ref|XP_003898744.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Papio anubis]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|351695029|gb|EHA97947.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Heterocephalus glaber]
Length = 340
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 70 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 129
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 130 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 186
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 187 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 232
>gi|222622445|gb|EEE56577.1| hypothetical protein OsJ_05928 [Oryza sativa Japonica Group]
Length = 510
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
A G++S + D+SG + V G+ W T+ ++FE++G + + + DK+
Sbjct: 161 AYGDASGDDGRAPGGDSSG-----KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKH 215
Query: 141 TGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSL 198
T +GFGF+ FS K + +H I R +V+ +P + P K+FVG L
Sbjct: 216 TKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGL 275
Query: 199 TPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIK 251
LTE +LREHF YG +V+ I R F FVTFE + + +I G+ ++
Sbjct: 276 PSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLG 335
Query: 252 DKKVVVMEATPKK 264
K+V + +A PKK
Sbjct: 336 GKQVEIKKAEPKK 348
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 91 KRSYP-----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
KR+ P GP + + V G+P + T+++L+E+F +G + + +D +TGRS+
Sbjct: 251 KRTVPREEMSSKDGP-KTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSR 309
Query: 146 GFGFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GFGF+ F S +S + + + +G + +++ E K G
Sbjct: 310 GFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 350
>gi|326918700|ref|XP_003205626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Meleagris gallopavo]
Length = 264
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 61 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 118 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 163
>gi|297673870|ref|XP_002814970.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pongo abelii]
gi|332233343|ref|XP_003265861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Nomascus leucogenys]
gi|395735091|ref|XP_003776522.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pongo abelii]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|395816795|ref|XP_003781875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 350
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q TD + + G+ W + DL EY +FG + +K D +GRS+GFGF+ F
Sbjct: 73 NASKDQQTDGKMFIGGLSWDTSKRDLTEYLSRFGEVVDCIIKTDPVSGRSRGFGFVLFKD 132
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D P+ K E+ KVFVG L+PD ++ ++++F
Sbjct: 133 AASVDKVLELKEHKLDGKLID---PQRAKPLKEKAPPKKVFVGGLSPDTSKEQIKDYFGA 189
Query: 214 YGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
+G + ++ +P+ R F FVT+ E + V K L ++ +I K + A PK+
Sbjct: 190 FGEIENIELPRDRKTNERRGFCFVTYTEGEPVKKLLESRYHHIGSGKCEIKVAQPKEVYR 249
Query: 268 ERQ 270
++Q
Sbjct: 250 QQQ 252
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 9/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W T +L+ YF ++G + V + TGRS+GFGF+ F+ ++ +A+
Sbjct: 20 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPDNVDRALENG 79
Query: 165 KHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H + R D + P S KVF+G L P++TE+DLR F YG V++V+I
Sbjct: 80 PHTLDGRTIDPKPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFFSRYGNVMEVVI 139
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
K R F F++FE + + +H VNI K+V + +A P+
Sbjct: 140 MYDQEKKKSRGFGFLSFENEPAVERATAEHFVNISGKQVEIKKAEPR 186
>gi|14110407|ref|NP_112740.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Homo
sapiens]
gi|114593989|ref|XP_001142372.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 4
[Pan troglodytes]
gi|332819433|ref|XP_003310370.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Pan
troglodytes]
gi|397524661|ref|XP_003832307.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan paniscus]
gi|397524663|ref|XP_003832308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pan paniscus]
gi|74762096|sp|O14979.3|HNRDL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=AU-rich element RNA-binding factor; AltName:
Full=JKT41-binding protein; AltName: Full=Protein laAUF1
gi|4512254|dbj|BAA75239.1| JKTBP2 [Homo sapiens]
gi|4512257|dbj|BAA75241.1| JKTBP2 [Homo sapiens]
gi|15079822|gb|AAH11714.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|47115183|emb|CAG28551.1| HNRPDL [Homo sapiens]
gi|47938369|gb|AAH71944.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|63990763|gb|AAY40914.1| unknown [Homo sapiens]
gi|119626290|gb|EAX05885.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626291|gb|EAX05886.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626292|gb|EAX05887.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626293|gb|EAX05888.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626294|gb|EAX05889.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626296|gb|EAX05891.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|123987254|gb|ABM83797.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|123999068|gb|ABM87118.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|410248290|gb|JAA12112.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296200|gb|JAA26700.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339827|gb|JAA38860.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339829|gb|JAA38861.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339831|gb|JAA38862.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|58761496|ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|58761498|ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|190356061|sp|Q32P51.2|RA1L2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1-like 2;
Short=hnRNP A1-like 2; AltName: Full=hnRNP core protein
A1-like 2
gi|119572426|gb|EAW52041.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
gi|119572427|gb|EAW52042.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
Length = 320
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ +K V +A PK++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
>gi|410957341|ref|XP_003985287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Felis catus]
gi|410957343|ref|XP_003985288.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Felis catus]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|148664250|ref|NP_057899.2| heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|126330931|ref|XP_001362287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Monodelphis
domestica]
Length = 417
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 147 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 206
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 207 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 263
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 264 DTKTNERRGFCFITYTDEEPVKKLLENRYHQIGSGKCEIKVAQPKE 309
>gi|386781544|ref|NP_001247638.1| heterogeneous nuclear ribonucleoprotein D-like [Macaca mulatta]
gi|380787105|gb|AFE65428.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|380787107|gb|AFE65429.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|383410015|gb|AFH28221.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
Length = 420
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|81917948|sp|Q9Z130.1|HNRDL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=JKT41-binding protein
gi|4514631|dbj|BAA75479.1| JKTBP [Mus musculus]
gi|18203892|gb|AAH21374.1| Heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
gi|74196730|dbj|BAE43104.1| unnamed protein product [Mus musculus]
gi|148688362|gb|EDL20309.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Mus
musculus]
Length = 301
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|2780748|dbj|BAA24361.1| hnRNP JKTBP [Homo sapiens]
gi|4512255|dbj|BAA75240.1| JKTBP1 [Homo sapiens]
Length = 301
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|302760911|ref|XP_002963878.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
gi|302813190|ref|XP_002988281.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300144013|gb|EFJ10700.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300169146|gb|EFJ35749.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
Length = 188
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 19/177 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T+ LK+YF+ +G + + D+ TGR++GFGF+ FS A + +L K
Sbjct: 8 LFIGGISWETTEEKLKDYFQAYGEVVETVIMRDRTTGRARGFGFVVFSDPNCADRVLLDK 67
Query: 166 HKIGNRICDVRIPESTKI-----------GTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
H I R+ R + + + G K+FVG L ++TE D R++FE +
Sbjct: 68 HTIDGRVAVPRDEQHSVVKANGSAVAGPGGHASSKTKKIFVGGLGSNVTEDDFRKYFEQF 127
Query: 215 GAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
G + DV++ +P R F F+TF+ + +++ + + +K+K V V A PK+
Sbjct: 128 GTITDVVVMYDHATQRP-RGFGFITFDTEEAVDNVLHKTFHELKEKMVEVKRAVPKE 183
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A S + P + + V G+ T++D ++YFEQFGT+ V D T R +G
Sbjct: 87 ANGSAVAGPGGHASSKTKKIFVGGLGSNVTEDDFRKYFEQFGTITDVVVMYDHATQRPRG 146
Query: 147 FGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIG 184
FGFI F + E+ + K H++ ++ +V+ +P+ G
Sbjct: 147 FGFITFDTEEAVDNVLHKTFHELKEKMVEVKRAVPKELSAG 187
>gi|88682985|gb|AAI05387.1| HNRPDL protein [Bos taurus]
Length = 336
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 66 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 125
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 126 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 182
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 183 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 228
>gi|47228465|emb|CAG05285.1| unnamed protein product [Tetraodon nigroviridis]
Length = 249
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
+ V G+ W T DLK+YF ++G + +K+D TGRS+GFGF+ F ES K A K
Sbjct: 59 MFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKDAESVEKVASQK 118
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+HK+ ++ D + ++ K +EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 119 EHKLNGKVIDPKKAKAMK--GKEPV-KKIFVGGLSPDTPEEKVREYFGAFGEVESIELPM 175
Query: 225 PF-----REFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 176 ETKTNKRRGFCFITFKEEEPVKCIM 200
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTF-ELDSVAKSLIG 245
K+FVG L+ D T+ DL+++F YG VVD I R F FV F + +SV K
Sbjct: 58 KMFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKDAESVEKVASQ 117
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y G G ++ +
Sbjct: 118 KEHKLNGK---VIDPKKAKAMKGKEPVKKIF-VGGLSPDTPEEKVREYFGAFGEVESIEL 173
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 174 PMETKTNKRR 183
>gi|144226849|ref|NP_001077194.1| heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
gi|134024605|gb|AAI34449.1| HNRPDL protein [Bos taurus]
Length = 420
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|119572425|gb|EAW52040.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_a
[Homo sapiens]
Length = 309
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ +K V +A PK++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
>gi|395542045|ref|XP_003772945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Sarcophilus harrisii]
Length = 475
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 205 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 264
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 265 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 321
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 322 DTKTNERRGFCFITYTDEEPVKKLLENRYHQIGSGKCEIKVAQPKE 367
>gi|449276581|gb|EMC85043.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Columba livia]
Length = 271
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 2 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 62 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 118
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 119 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 164
>gi|80477437|gb|AAI08267.1| Heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
Length = 320
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ +K V +A PK++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
>gi|149046813|gb|EDL99587.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b
[Rattus norvegicus]
Length = 300
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L V GI W + LKEYF FG + A + D+ TGR++GFGFI F+ A + +
Sbjct: 5 NGKLFVGGISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADPSVADRVI 64
Query: 163 LKKHKIGNRICDVR---------IPESTKI----GTEEPVAS-KVFVGSLTPDLTESDLR 208
+KH I R+ + + IP + G+ P + K+FVG L +TESD +
Sbjct: 65 KEKHNIDGRMVEAKRAIPRDDQNIPSRNSVSSMHGSPGPDHTRKIFVGGLASTVTESDFK 124
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEAT 261
+F+ +G ++D ++ +P R F F+T++ D +V K L + K V V A
Sbjct: 125 NYFDQFGIIIDAVVMYDHNTQRP-RGFGFITYDSDEAVDKVLTKTFHELNGKMVEVKRAV 183
Query: 262 PKK 264
PK+
Sbjct: 184 PKE 186
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + V G+ T T++D K YF+QFG + A V D NT R +GFGFI + S E+
Sbjct: 102 GPDHTRKIFVGGLASTVTESDFKNYFDQFGIIIDAVVMYDHNTQRPRGFGFITYDSDEAV 161
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIG-TEEPVA 190
K + K H++ ++ +V+ +P+ G T P++
Sbjct: 162 DKVLTKTFHELNGKMVEVKRAVPKELSPGPTRSPLS 197
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+FVG ++ D E L+E+F +G VV+ +I K R F F+ F SVA +I +
Sbjct: 7 KLFVGGISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADPSVADRVIKE 66
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
NI + V A P+ N
Sbjct: 67 KHNIDGRMVEAKRAIPRDDQN 87
>gi|158296283|ref|XP_001237856.2| AGAP006668-PA [Anopheles gambiae str. PEST]
gi|157016437|gb|EAU76642.2| AGAP006668-PA [Anopheles gambiae str. PEST]
Length = 360
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W T+ DL+E+F Q+G +E NVK D NTGRS+GF FI + + +S K +
Sbjct: 70 LFVGGLSWETTEKDLREHFGQYGEIESINVKTDPNTGRSRGFAFIVYKASDSIDKVVAAG 129
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + N+ D P+ K K+FVG LT D+++ +++ F +G +V+V +P
Sbjct: 130 EHVLNNKKVD---PKRAKA-----RPGKIFVGGLTSDISDEEIKTFFGQFGTIVEVELPF 181
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+T+E V L+ I K+V V +ATPK
Sbjct: 182 DKQKNQRKGFCFITYESVQVVNELLKTPKQTIAGKEVDVKKATPK 226
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFEL-DSVAKSL-I 244
K+FVG L+ + TE DLREHF YG + + + P R FAF+ ++ DS+ K +
Sbjct: 69 KLFVGGLSWETTEKDLREHFGQYGEIESINVKTDPNTGRSRGFAFIVYKASDSIDKVVAA 128
Query: 245 GQHVNIKDKKV 255
G+HV + +KKV
Sbjct: 129 GEHV-LNNKKV 138
>gi|194390304|dbj|BAG61914.1| unnamed protein product [Homo sapiens]
Length = 271
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ +++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 61 EHKLDSKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 118 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 163
>gi|296486392|tpg|DAA28505.1| TPA: heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
Length = 420
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|451993278|gb|EMD85752.1| hypothetical protein COCHEDRAFT_113051, partial [Cochliobolus
heterostrophus C5]
Length = 168
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T++ LK YF QFG + V D TGRS+GFGF+ F + M+K+
Sbjct: 1 MFIGGLNWETTEDSLKGYFSQFGEVSECTVMRDSATGRSRGFGFLTFKDPKCVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + TE D F+ +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPREEQERTSKIFVGGVSQEATEEDFTNFFKQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
+P R F FVTF+ D+ + + + I K++ V A P+ M +
Sbjct: 118 KETGRP-RGFGFVTFDGDAAVDATLRGPLQILGKQIEVKRAQPRGNMRD 165
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + V G+ T+ D +F+QFG + A + +DK TGR +GFGF+
Sbjct: 71 KRAIPREEQE-RTSKIFVGGVSQEATEEDFTNFFKQFGRVVDATLMMDKETGRPRGFGFV 129
Query: 151 RFSSHESALKAMLK 164
F ++A+ A L+
Sbjct: 130 TFDG-DAAVDATLR 142
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 14/172 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + GI W +++ LK+YF +G + + D+ TGR++GFGF+ F A + + +K
Sbjct: 8 IFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEK 67
Query: 166 HKIGNRICDVR--IPESTKIGTEE------PVASKVFVGSLTPDLTESDLREHFEYYGAV 217
H I R + + +P + + P K+FVG L P +TE D R++FE +G +
Sbjct: 68 HTIDGRAVEAKRVVPRDEQQNVQRTSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNI 127
Query: 218 VDVLI-----PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
DV++ + R F F+T++ D+V K L +K+K V V A PK
Sbjct: 128 TDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPK 179
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ T T++D ++YFEQFG + V D T R +GFGFI + S ++ K + +
Sbjct: 103 IFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQT 162
Query: 166 -HKIGNRICDVR--IPESTKIG 184
H++ + +V+ IP+ G
Sbjct: 163 FHQLKEKTVEVKRAIPKDMSPG 184
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIG 245
K+F+G ++ D +E L+++F YG VVDV+I K R F FV F SVA +I
Sbjct: 6 GKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQ 65
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDR 282
+ I + V P+ + Q N R +
Sbjct: 66 EKHTIDGRAVEAKRVVPRDEQQNVQRTSNMAGPRTKK 102
>gi|413954077|gb|AFW86726.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 401
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+A GN A D+SG + + V G+ W T+ ++F+++G + + + DK
Sbjct: 69 EAVGNVDAGGEDERDADSSGGDASGKVFVGGVAWETTEETFTKHFQKYGAITDSVIMKDK 128
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPE--STKIGTEEPVASKVFV 195
+T +GFGF+ FS + + +H I R +V+ +P+ S+K G P K+FV
Sbjct: 129 HTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKELSSKDG---PKTKKIFV 185
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHV 248
G + P LTE L+EHF YG VV+ I R F FVTFE + + ++ G+
Sbjct: 186 GGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMH 245
Query: 249 NIKDKKVVVMEATPKK 264
++ K+V + +A PKK
Sbjct: 246 DLGGKQVEIKKAEPKK 261
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 91 KRSYP----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
KR+ P GP + + V GIP + T++ LKE+F +G + + +D +TGRS+G
Sbjct: 165 KRTVPKELSSKDGP-KTKKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRG 223
Query: 147 FGFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
FGF+ F S ++ + M + H +G + +++ E K G
Sbjct: 224 FGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPG 263
>gi|149521754|ref|XP_001512512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Ornithorhynchus anatinus]
gi|338723434|ref|XP_003364726.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Equus
caballus]
gi|426231939|ref|XP_004009994.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Ovis
aries]
gi|2547076|dbj|BAA22860.1| A+U-rich element RNA binding factor [Homo sapiens]
Length = 271
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 61 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 118 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 163
>gi|125555768|gb|EAZ01374.1| hypothetical protein OsI_23407 [Oryza sativa Indica Group]
Length = 407
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K + +
Sbjct: 93 IFVGGVAWETTEESFTKHFEKYGAISDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLQDE 152
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG + P LTE L+EHF YG VV+ I
Sbjct: 153 HTIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIM 212
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + ++ G+ ++ K+V + +A PKK
Sbjct: 213 LDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKK 260
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 13/139 (9%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
++ + V GI + T+ DL +YF Q+G + A VK D+NTGRS+GF F+ F++ E+ A
Sbjct: 36 EDKKIFVGGIAYDVTNEDLSQYFSQYGEVAQAQVKYDRNTGRSRGFAFVEFTTGEACRAA 95
Query: 162 M-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
+ ++ + + +V+ +S + KVFVG L D E +LR HFE YG V D+
Sbjct: 96 LNAREQSLKGKTVEVKPAKSRE-------NKKVFVGGLPADHPEEELRAHFEQYGKVEDI 148
Query: 221 LIP-----KPFREFAFVTF 234
P K R FAF+ F
Sbjct: 149 EWPFDKQTKARRNFAFIVF 167
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+N + V G+P + +L+ +FEQ+G +E DK T + F FI F E+A +A
Sbjct: 117 ENKKVFVGGLPADHPEEELRAHFEQYGKVEDIEWPFDKQTKARRNFAFIVFEEEEAAERA 176
Query: 162 MLK-KHKIGNRICDVR--IPESTKI 183
K G+R CDV+ +P+ +
Sbjct: 177 SATPKQMFGSRECDVKKAVPQGKRF 201
>gi|125597614|gb|EAZ37394.1| hypothetical protein OsJ_21732 [Oryza sativa Japonica Group]
Length = 344
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K + +
Sbjct: 30 IFVGGVAWETTEESFTKHFEKYGAISDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLQDE 89
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG + P LTE L+EHF YG VV+ I
Sbjct: 90 HTIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIM 149
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + ++ G+ ++ K+V + +A PKK
Sbjct: 150 LDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKK 197
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 91 KRSYP-----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
KR+ P GP + + V GIP + T++ LKE+F +G + + +D TGRS+
Sbjct: 100 KRTVPREEMSSKDGP-KTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSR 158
Query: 146 GFGFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GFGF+ F + ++ + M + H + + +++ E K G
Sbjct: 159 GFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKKPG 199
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQ 246
K+FVG + + TE +HFE YGA+ D +I K R F FVTF SV ++
Sbjct: 29 KIFVGGVAWETTEESFTKHFEKYGAISDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLQD 88
Query: 247 HVNIKDKKVVVMEATPKKKMNER 269
I + V V P+++M+ +
Sbjct: 89 EHTIDGRTVEVKRTVPREEMSSK 111
>gi|1814274|gb|AAC50956.1| ABBP-1 [Homo sapiens]
Length = 331
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 129
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIP 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 130 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 185
Query: 224 -----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 186 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 238
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 67 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 127 DQKEHRLDGRVI----DPKKAMAMKKD 149
>gi|291402431|ref|XP_002717571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQEM 186
>gi|444723245|gb|ELW63904.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 326
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|158523286|sp|Q99729.2|ROAA_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=APOBEC1-binding protein
1; Short=ABBP-1
Length = 332
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 130
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIP 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 131 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 186
Query: 224 -----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 187 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 68 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 127
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 128 DQKEHRLDGRVI----DPKKAMAMKKD 150
>gi|291415461|ref|XP_002723970.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGMKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|119568829|gb|EAW48444.1| hCG1642312, isoform CRA_a [Homo sapiens]
Length = 511
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
S A + KR+ S L VLG+PW T+ DLKEYF FG + VK D TG
Sbjct: 354 TSLAIKVKRAVQKTSA------LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGY 407
Query: 144 SKGFGFIRFSSHESALKAMLKKHKIGNRICD---VRIPESTKIGTEEPVASKVFVGSLTP 200
SKGFGF+ F +E+ +K + H +I D V+ + E + K+FVG T
Sbjct: 408 SKGFGFVHFIKYETQVK---ECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCTE 464
Query: 201 DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
+ L++ F + V+DV I KPFR+FAF+T ++ S+
Sbjct: 465 IMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISL 503
>gi|354497787|ref|XP_003511000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Cricetulus griseus]
gi|344249844|gb|EGW05948.1| Heterogeneous nuclear ribonucleoprotein D-like [Cricetulus griseus]
Length = 271
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 61 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 117
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 118 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 163
>gi|432104101|gb|ELK30931.1| Heterogeneous nuclear ribonucleoprotein A/B [Myotis davidii]
Length = 308
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V + W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 1 MFVGHLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ R+ D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 61 EHKLDGRVID---PKKAMAMKKEPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIDLPM 116
Query: 224 ----KPFREFAFVTF--ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + I K+ ++ K N+R+
Sbjct: 117 DPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGSKIEAIDLPMDPKSNKRR 169
>gi|291402433|ref|XP_002717572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQEM 186
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
A G++S + D+SG + V G+ W T+ ++FE++G + + + DK+
Sbjct: 48 AYGDASGDDGRAPGGDSSGKI-----FVGGVAWETTEESFSKHFEKYGAITDSVIMKDKH 102
Query: 141 TGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSL 198
T +GFGF+ FS K + +H I R +V+ +P + P K+FVG L
Sbjct: 103 TKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGL 162
Query: 199 TPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIK 251
LTE +LREHF YG +V+ I R F FVTFE + + +I G+ ++
Sbjct: 163 PSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLG 222
Query: 252 DKKVVVMEATPKK 264
K+V + +A PKK
Sbjct: 223 GKQVEIKKAEPKK 235
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 87 ATQSKRSYP-----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+ KR+ P GP + + V G+P + T+++L+E+F +G + + +D +T
Sbjct: 134 TVEVKRTVPREEMSSKDGP-KTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHST 192
Query: 142 GRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GRS+GFGF+ F S +S + + + +G + +++ E K G
Sbjct: 193 GRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 237
>gi|432901707|ref|XP_004076907.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oryzias latipes]
Length = 279
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGF+ F S K + K
Sbjct: 58 MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSSSVDKVLEQK 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R D + + K + K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 118 EHRLDGRQIDPKRAMAMK----KEAVRKIFVGGLNPEATEEAIREYFGAFGEIETIELPI 173
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
K R F F+T++ ++ K +
Sbjct: 174 DPKSKKRRGFIFITYKDEASVKKCL 198
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+FVG L+ D ++ DL+++F +G V D I R F FV F+ S
Sbjct: 52 EDDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSSSVD 111
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKM 266
++ Q K+ ++ + PK+ M
Sbjct: 112 KVLEQ----KEHRLDGRQIDPKRAM 132
>gi|157110306|ref|XP_001651044.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878768|gb|EAT42993.1| AAEL005515-PB [Aedes aegypti]
Length = 292
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W +D +LKE+F Q+G +E NVK D NTGRS+GF FI + S +S K +
Sbjct: 38 LFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAAG 97
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I N+ D P+ K K+FVG LT ++++ +++ F +G +V+V +P
Sbjct: 98 DHVINNKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVEMPF 149
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V +ATPK
Sbjct: 150 DKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPK 194
>gi|395834189|ref|XP_003790094.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Otolemur garnettii]
Length = 363
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|29124621|gb|AAH48898.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+ F +FG + +K+D NTGRS+GFGFI F K + +K
Sbjct: 71 MFVGGLSWDTSKKDLKDCFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQK 130
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H++ R D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 131 EHRLDGRQID---PKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAFGEIETIELPM 186
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 187 DPKSNKRRGFVFITFKEEEAVKKIL 211
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAK 241
E A K+FVG L+ D ++ DL++ F +G V D I P R F F+ F+ S
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDCFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 124
Query: 242 SLIGQHVN------IKDKKVVVMEATPKKKM 266
++ Q + I KK + M+ P KK+
Sbjct: 125 KVLAQKEHRLDGRQIDPKKAMAMKKEPVKKI 155
>gi|302785051|ref|XP_002974297.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
gi|302807955|ref|XP_002985671.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300146580|gb|EFJ13249.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300157895|gb|EFJ24519.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
Length = 187
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T+ L++YF+++G + + D+NTGR++GFGF+ F+ +A A+ +K
Sbjct: 8 LFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEK 67
Query: 166 HKIGNRICDVR----------IPESTKIGTEEPV------ASKVFVGSLTPDLTESDLRE 209
H I R+ + + IP S+ + K+FVG L +TE + R
Sbjct: 68 HTINGRLVEAKKAVPRDEQQTIPRSSISSGGQSPGGGQGRTKKIFVGGLASTVTEEEFRG 127
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATP 262
+FE +G + D ++ +P R F F+TF+ DSV L+ +KDK V V A P
Sbjct: 128 YFEQFGTISDAVVMYDHTTQRP-RGFGFITFDSEDSVEAVLMKSFHELKDKMVEVKRAVP 186
Query: 263 K 263
+
Sbjct: 187 R 187
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ + TE LR++F+ YG + + +I K R F FV+F S A + +
Sbjct: 7 KLFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAE 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHTINGRLVEAKKAVPR 83
>gi|296084992|emb|CBI28407.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ LK+YF +G + A + D+ TGR++GFGF+ F+ A + + +K
Sbjct: 8 LFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEK 67
Query: 166 HKIGNRICDVR--IPE---------STKI-GTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P+ S I G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+GA+ DV++ +P R F F+T+E ++V K L+ + K V V A PK+
Sbjct: 128 QFGAITDVVVMYDHNTQRP-RGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFG + V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVASKV 193
K +LK H++ ++ +V+ +P+ G P+ S++
Sbjct: 161 DKVLLKTFHELNGKMVEVKRAVPKELSPG---PIRSQL 195
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+++F YG VV+ +I K R F FV F +VA+ +I +
Sbjct: 7 KLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKE 66
Query: 247 HVNIKDKKVVVMEATPK 263
NI + V +A PK
Sbjct: 67 KHNIDGRMVEAKKAVPK 83
>gi|340382092|ref|XP_003389555.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
1-like [Amphimedon queenslandica]
Length = 344
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+N P + L V G+ T+ L+EYFE++GT+ +KVD TGRS+GF F+ F +
Sbjct: 49 NNDVPYDDHKLFVGGLTSDTTEQTLQEYFEEYGTISEIILKVDPITGRSRGFAFLLFKEN 108
Query: 156 ESALKAM-LKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
++ K + H IG+++ D + IP + ++ KVFVG + D+ E ++EHFE
Sbjct: 109 DAVDKILEASPHTIGDKVVDTKKAIPHAVHQQMKQ-RTKKVFVGGVPTDMPEHTIKEHFE 167
Query: 213 YYGAVVDVLIP--------KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+G + +V + K R F FVTF D+ K+ I + V V ATP+
Sbjct: 168 KFGPIEEVALVTEKGAGSNKKRRGFCFVTFLSEDTAEKACCNSFHKINESDVEVKRATPR 227
Query: 264 KKMNERQDNRNN---FDRRNDRSRSPMSNSRQ------YGGGNGYYD 301
++ ++R + N F R R + S + YGG GY++
Sbjct: 228 EQ-DKRMSHGNAAPPFMGRGGRGHIMHAQSGRGGHWAPYGGHAGYFN 273
>gi|194741284|ref|XP_001953119.1| GF17370 [Drosophila ananassae]
gi|190626178|gb|EDV41702.1| GF17370 [Drosophila ananassae]
Length = 343
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 18/197 (9%)
Query: 77 CTFDASGNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFA 133
T + GN++ + + S + Q D L V G+ W T+ +L+++F +FG +E
Sbjct: 27 STENGEGNAAGSTNGASENQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKFGEIESI 86
Query: 134 NVKVDKNTGRSKGFGFIRFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASK 192
NVK D TGRS+GF FI F++ E+ K + ++H I ++ D P+ K K
Sbjct: 87 NVKTDPQTGRSRGFAFIVFTTTEAIDKVSAAEEHIINSKKVD---PKKAK-----ARHGK 138
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIP----KPFRE-FAFVTFELDSVAKSLIGQ- 246
+FVG LT ++T+ +++ +F +G +V+V +P K R+ F F+TF+ + V L+
Sbjct: 139 IFVGGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDAEQVVTDLLKTP 198
Query: 247 HVNIKDKKVVVMEATPK 263
I K+V V ATPK
Sbjct: 199 KQKIAGKEVDVKRATPK 215
>gi|225447606|ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
Length = 478
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ LK+YF +G + A + D+ TGR++GFGF+ F+ A + + +K
Sbjct: 8 LFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEK 67
Query: 166 HKIGNRICDVR--IPE---------STKI-GTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P+ S I G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+GA+ DV++ +P R F F+T+E ++V K L+ + K V V A PK+
Sbjct: 128 QFGAITDVVVMYDHNTQRP-RGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFG + V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVASKV 193
K +LK H++ ++ +V+ +P+ G P+ S++
Sbjct: 161 DKVLLKTFHELNGKMVEVKRAVPKELSPG---PIRSQL 195
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+++F YG VV+ +I K R F FV F +VA+ +I +
Sbjct: 7 KLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKE 66
Query: 247 HVNIKDKKVVVMEATPK 263
NI + V +A PK
Sbjct: 67 KHNIDGRMVEAKKAVPK 83
>gi|344284839|ref|XP_003414172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Loxodonta africana]
Length = 363
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|74001731|ref|XP_858286.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 9
[Canis lupus familiaris]
Length = 363
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|291415463|ref|XP_002723971.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGMKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|255086059|ref|XP_002508996.1| predicted protein [Micromonas sp. RCC299]
gi|226524274|gb|ACO70254.1| predicted protein [Micromonas sp. RCC299]
Length = 131
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V + W TD L+EYFE+FG + VK + GRS+GFGF+ F+ +SA+ A+L++
Sbjct: 1 MCVRSLAWETTDQALREYFERFGEVTTCTVKTGPD-GRSRGFGFVNFAD-KSAIAAVLEE 58
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
H + R ++ P T + +KVFVG L P + +REHF +G V+DV +P
Sbjct: 59 EHVVDGRRLEILPPRLTDLAH----TTKVFVGRLEPSVPVETIREHFAQFGEVLDVYMPH 114
Query: 225 PFREFAFVTF 234
P + F FVT+
Sbjct: 115 PHKGFCFVTY 124
>gi|296216773|ref|XP_002754712.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+R+++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVRYAAVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+F+G + D E LR++FE Y
Sbjct: 70 AAMNARSHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFIGGIKEDTEEHHLRDYFEQY 128
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G + ++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEMIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|224064856|ref|XP_002301585.1| predicted protein [Populus trichocarpa]
gi|222843311|gb|EEE80858.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LK+YF+ FG + A + D+ TGR++GFGF+ FS A + + +K
Sbjct: 8 LFIGGISWDTNEERLKDYFQSFGEVVEAVIMKDRTTGRARGFGFVVFSDPSIAERVIKEK 67
Query: 166 HKIGNRICDVR--IPE-----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHF 211
H I R+ + + +P + G+ P + K+FVG L +TESD R++F
Sbjct: 68 HSIDGRMVEAKKAVPRDDQNMLSRNSGGSIHGSPGPGRTKKIFVGGLASTVTESDFRKYF 127
Query: 212 EYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +G + DV++ +P R F F+T++ ++V K L+ + K V V A PK+
Sbjct: 128 DQFGLITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRAVPKE 186
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D ++YF+QFG + V D NT R +GFGFI + S E+
Sbjct: 102 GPGRTKKIFVGGLASTVTESDFRKYFDQFGLITDVVVMYDHNTQRPRGFGFITYDSEEAV 161
Query: 159 LKAMLKK-HKIGNRICDVR 176
K ++K H++ ++ +V+
Sbjct: 162 DKVLMKTFHELNGKMVEVK 180
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
+ K+F+G ++ D E L+++F+ +G VV+ +I K R F FV F S+A+ +I
Sbjct: 5 SGKLFIGGISWDTNEERLKDYFQSFGEVVEAVIMKDRTTGRARGFGFVVFSDPSIAERVI 64
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
+ +I + V +A P+ N
Sbjct: 65 KEKHSIDGRMVEAKKAVPRDDQN 87
>gi|193688245|ref|XP_001946219.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1, A2/B1
homolog [Acyrthosiphon pisum]
Length = 350
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 120/249 (48%), Gaps = 34/249 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ + TD +LK+YFEQ+G + V D T RS+GFGFI +++ A +
Sbjct: 10 LFVGGLDYKTTDENLKKYFEQWGEIMDVVVMKDPQTKRSRGFGFITYAAAHMVDDAQGAR 69
Query: 165 KHKIGNRICDVR--IPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAVVDV 220
HKI R + + +P+ T IG E A+ K+FVG L +TE DL+E+F YG V
Sbjct: 70 PHKIDGRTVEPKRAVPK-TDIGKPEAGATVKKLFVGLLNDSITEEDLKEYFSPYGNVTSA 128
Query: 221 LI-----PKPFREFAFVTF-ELDSVAK-SLIGQHVNIKDKKVVVMEATPKKKMNE--RQD 271
+ R F FV F + D V K L G H+ IK KK+ V +A K++M ++
Sbjct: 129 ALVVHKETGKKRGFGFVEFDDYDPVDKICLKGSHI-IKGKKIDVKKALSKEEMARVNARN 187
Query: 272 NRNNFDRRNDRSRSPMSNS-RQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHG---NG 327
N N+ D +R+ + R +G G G+ R ND D W G G
Sbjct: 188 NSNSADNWGSDNRNAWEPTMRNFGRGGGW--------------RSGNDPDPWESGPSSRG 233
Query: 328 GNSNNATVS 336
GN + S
Sbjct: 234 GNWGGPSTS 242
>gi|395735093|ref|XP_003776523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pongo abelii]
gi|441625206|ref|XP_004089054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Nomascus
leucogenys]
Length = 363
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|410957345|ref|XP_003985289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Felis catus]
Length = 363
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|337451|gb|AAA36575.1| hnRNP type A/B protein [Homo sapiens]
gi|228098|prf||1717217A hnRNP protein A/B
Length = 284
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 129
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIP 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 130 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 185
Query: 224 -----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 186 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 238
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 67 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 127 DQKEHRLDGRVI----DPKKAMAMKKD 149
>gi|405957004|gb|EKC23243.1| Heterogeneous nuclear ribonucleoprotein A/B [Crassostrea gigas]
Length = 475
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V + W + DLK+YF +FG +E +K D T RS+GFGF+ F + K + +K
Sbjct: 60 IFVGNLSWETSQKDLKDYFTKFGEVENCVLKQDLETKRSRGFGFVVFKDPSTVDKVLDEK 119
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H +G R D P+ +E V K+FVG + P LTE++++E+FE +G V + +P
Sbjct: 120 THNLGGRNID---PKKANPRKKEEVIKKIFVGKVDPSLTEAEIKEYFETFGEVKKIDLPY 176
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKK 254
+ R F FV F+ + K + Q V+ IKD++
Sbjct: 177 DKTKEQRRAFCFVEFKEEDAVKKITDQAVHKIKDQE 212
>gi|426344797|ref|XP_004038940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Gorilla gorilla gorilla]
Length = 363
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|332801090|ref|NP_001193929.1| heterogeneous nuclear ribonucleoprotein D-like isoform b [Homo
sapiens]
gi|114593993|ref|XP_001142118.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan troglodytes]
gi|397524665|ref|XP_003832309.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pan paniscus]
gi|119626295|gb|EAX05890.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Homo
sapiens]
gi|410248288|gb|JAA12111.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296198|gb|JAA26699.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 363
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
>gi|225438019|ref|XP_002274734.1| PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera]
Length = 441
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V GIPW T+ LKEYF Q+G + + DK TGR +GFGF+ F+ S L A+L+
Sbjct: 8 LFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFAD-PSVLDAVLQE 66
Query: 165 KHKIGNRICDVR-----------IPESTKIGTEEPVAS------KVFVGSLTPDLTESDL 207
KH I R + + P ++ G K+FVG L LTE
Sbjct: 67 KHTIDGRTVEAKRALSREEQHTSRPGNSNTGRSSSGMGGNFKTKKIFVGGLPSTLTEEGF 126
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
R++FE YG V DV++ +P R F F++F+ D+V + L ++ K V V A
Sbjct: 127 RQYFETYGHVTDVVVMYDQNTQRP-RGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVKRA 185
Query: 261 TPK 263
PK
Sbjct: 186 LPK 188
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
+ + RS G + + V G+P T T+ ++YFE +G + V D+NT R +GF
Sbjct: 94 SNTGRSSSGMGGNFKTKKIFVGGLPSTLTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGF 153
Query: 148 GFIRFSSHESALKAMLKK-HKIGNRICDVR 176
GFI F + ++ + + K H + ++ +V+
Sbjct: 154 GFISFDTEDAVDRVLHKTFHDLNGKLVEVK 183
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLI 244
K+FVG + D TE L+E+F YG V +I +P R F FV F SV +++
Sbjct: 6 GKLFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRP-RGFGFVVFADPSVLDAVL 64
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
+ I + V A +++ + + +N R
Sbjct: 65 QEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGR 98
>gi|15010818|dbj|BAB62188.1| JKTBP1delta6 [Homo sapiens]
Length = 244
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|426327841|ref|XP_004024718.1| PREDICTED: TAR DNA-binding protein 43 [Gorilla gorilla gorilla]
Length = 237
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 186 EEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
+EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +A+SL
Sbjct: 8 DEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 67
Query: 245 GQHVNIKDKKVVVMEATPKKKMNER 269
G+ + IK V + A PK N +
Sbjct: 68 GEDLIIKGISVHISNAEPKHNSNRQ 92
>gi|449468578|ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
gi|449509419|ref|XP_004163583.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Length = 436
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 37/215 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L++YF QFG + A + DK TGR +GFGF+ FS + + K
Sbjct: 8 LFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLLDQVLQDK 67
Query: 166 HKIGNRICDVRIP-------ESTKIGTEEPVAS----------KVFVGSLTPDLTESDLR 208
H I R + + ST+ G S K+FVG L LTE R
Sbjct: 68 HTIDGRQVEAKRALSREEQQTSTRSGINNSGRSSGGSGYFRTKKIFVGGLPSALTEDGFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE YG V DV+I +P R F F+TF+ D+V + L + K V V A
Sbjct: 128 QYFESYGQVTDVVIMYDQNTQRP-RGFGFITFDNEDAVDRVLYKSFHELNGKLVEVKRAL 186
Query: 262 PK------------KKMNERQDNRNNFDRRNDRSR 284
PK + N N+FD R+D +R
Sbjct: 187 PKDANPGSGGRAGYQNYGASGTNSNSFDGRSDGNR 221
>gi|508268|gb|AAA64653.1| A+U-rich RNA-binding protein, partial [Mus musculus]
Length = 177
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 48 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 107
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 108 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 163
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFVTF-ELDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD + P R F FV F E +SV K +
Sbjct: 47 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 106
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ 305
+ + K V++ K M ++ + F +P R+Y GG G ++ +
Sbjct: 107 KEHKLNGK---VIDPKRAKAMKTKEPVKKIF-VGGLSPDTPEEKIREYFGGFGEVESIEL 162
Query: 306 QQGGYNNKRR 315
NKRR
Sbjct: 163 PMDNKTNKRR 172
>gi|318086976|gb|ADV40080.1| putative RNA-binding protein musashi [Latrodectus hesperus]
Length = 298
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L + GI DLKEYF +FG + N+K D +GRS+GF F+ F+S +S +
Sbjct: 56 LFIGGISRETNQKDLKEYFSKFGEVTEVNIKTDPTSGRSRGFAFVAFASRDSVDSVLHNG 115
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+K +I + VR P K+FVG + D+TE+D+R +FE+YG V
Sbjct: 116 PHNIKGKQIEAKRAKVR-----------PGIKKIFVGGIESDMTEADIRNYFEHYGKVEA 164
Query: 220 VLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V +P R+F FVTFE + + Q I +K+ V +AT K
Sbjct: 165 VELPFDKVKNQRRQFCFVTFEDEMTVDQVCKQPKQKIGNKECDVKKATTK 214
>gi|355694953|gb|AER99843.1| heteroproteinous nuclear ribonucleoprotein D-like protein [Mustela
putorius furo]
Length = 294
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 95 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 154
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 155 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 211
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 212 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 257
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++F ++G + + + DK+T +GFGF+ FS K + +
Sbjct: 67 IFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE 126
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG L L+E DLR+HF YG VV+ I
Sbjct: 127 HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSYGKVVEHQIM 186
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F FVTFE + + +I G+ ++ K+V + +A PKK + N
Sbjct: 187 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 242
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+P + +++DL+++F +G + + VD +TGRS+GFGF+ F S +S
Sbjct: 150 GP-KTRKIFVGGLPASLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSV 208
Query: 159 LKAML--KKHKIGNRICDVRIPESTKIG 184
+ + + +G + +++ E K G
Sbjct: 209 ERVISEGRMRDLGGKQVEIKKAEPKKHG 236
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + TGRS+GFGF+ F+ E+ +A+
Sbjct: 14 LFVGGLSWETTHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVDRALENG 73
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R K P KVF+G L P++TE+DLR F YG V++
Sbjct: 74 PHTLDGRTIDPKPCNPRSQHKPKRTGGYP---KVFLGGLPPNITETDLRSFFCRYGNVME 130
Query: 220 VLI-----PKPFREFAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPK 263
V+I K R F F++FE + +V ++ V+I K+V V +A P+
Sbjct: 131 VVIMYDQEKKKSRGFGFLSFENEVAVERATTDHFVHISGKQVEVKKAEPR 180
>gi|291402435|ref|XP_002717573.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQEM 186
>gi|224110618|ref|XP_002315580.1| predicted protein [Populus trichocarpa]
gi|222864620|gb|EEF01751.1| predicted protein [Populus trichocarpa]
Length = 459
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L++YF Q+G + A V DK TGR +GFGF+ F+ + K
Sbjct: 8 LFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPAVLDMVLQDK 67
Query: 166 HKIGNRICDVRIPES-------TKIGTEEPV----------ASKVFVGSLTPDLTESDLR 208
H I R+ + + S + G P K+FVG L P LTE R
Sbjct: 68 HTIDGRMVEAKRALSREEQQTNARAGNLNPARNTSGGGNIRTKKIFVGGLPPTLTEDGFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE +G V DV+I +P R F F++F+ D+V + L ++ K+V V A
Sbjct: 128 QYFEAFGFVADVVIMYDQSTQRP-RGFGFISFDTEDAVDRVLQRSFHDLNGKQVEVKRAL 186
Query: 262 PKK 264
PK+
Sbjct: 187 PKE 189
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
G ++ + V G+P T T++ ++YFE FG + + D++T R +GFGFI F + E
Sbjct: 104 GGNIRTKKIFVGGLPPTLTEDGFRQYFEAFGFVADVVIMYDQSTQRPRGFGFISFDT-ED 162
Query: 158 ALKAMLKK--HKIGNRICDVR 176
A+ +L++ H + + +V+
Sbjct: 163 AVDRVLQRSFHDLNGKQVEVK 183
>gi|365758528|gb|EHN00365.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 539
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 146 AQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 203
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 204 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 258
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 259 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 318
Query: 258 MEATPKKKMNERQDN 272
A P+ + +N
Sbjct: 319 KRAEPRHMQQKSSNN 333
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++F ++G + + + DK+T +GFGF+ FS K + +
Sbjct: 47 IFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE 106
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG L L+E DLR+HF YG VV+ I
Sbjct: 107 HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSYGKVVEHQIM 166
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F FVTFE + + +I G+ ++ K+V + +A PKK + N
Sbjct: 167 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 222
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+P + +++DL+++F +G + + VD +TGRS+GFGF+ F S +S
Sbjct: 130 GP-KTRKIFVGGLPASLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSV 188
Query: 159 LKAML--KKHKIGNRICDVRIPESTKIG 184
+ + + +G + +++ E K G
Sbjct: 189 ERVISEGRMRDLGGKQVEIKKAEPKKHG 216
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQ 246
K+FVG + + TE +HF YGA+ D +I K R F FVTF SV ++
Sbjct: 46 KIFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED 105
Query: 247 HVNIKDKKVVVMEATPKKKMNER 269
NI + V V P+++M+ +
Sbjct: 106 EHNIDGRTVEVKRTVPREEMSSK 128
>gi|348535473|ref|XP_003455225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 332
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F S K + K
Sbjct: 76 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVEKVLEQK 135
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R D P+ ++PV K+FVG L PD ++ + E+F +G + + +P+
Sbjct: 136 EHRLDGRQID---PKKAMAMKKDPV-KKIFVGGLNPDTSKEVIEEYFGTFGEIETIELPQ 191
Query: 225 -----PFREFAFVTFELDS-VAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T++ ++ V K + ++ N+ K + A PK+
Sbjct: 192 DPKTEKRRGFVFITYKEEAPVKKVMEKKYHNVGGSKCEIKIAQPKE 237
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAK 241
E A K+FVG L+ D ++ DL+++F +G V D I R F F+ F+ + +
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVE 129
Query: 242 SLIGQHVN------IKDKKVVVMEATPKKKM 266
++ Q + I KK + M+ P KK+
Sbjct: 130 KVLEQKEHRLDGRQIDPKKAMAMKKDPVKKI 160
>gi|189441636|gb|AAI67421.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 254
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 54 MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQK 113
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++P+ K+FVG L P+ E +RE+FE +G + + +P
Sbjct: 114 EHRLDGRLID---PKKAMAMKKDPI-KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPM 169
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 170 DPKTNKRRGFVFITFKEEEPVKKIL 194
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 169 GNRICDVRIPESTKIGTE-------------EPVASKVFVGSLTPDLTESDLREHFEYYG 215
G+ CD ES G + E A K+FVG L+ D ++ DL+++F +G
Sbjct: 17 GHEACDAEAAESKVPGGQNGAEGDQINASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFG 76
Query: 216 AVVDVLI---PKPFRE--FAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
V D I P R F F+ F+ + ++ Q + D +++ PKK M ++
Sbjct: 77 EVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRLI----DPKKAMAMKK 132
Query: 271 D 271
D
Sbjct: 133 D 133
>gi|159464421|ref|XP_001690440.1| hypothetical protein CHLREDRAFT_99772 [Chlamydomonas reinhardtii]
gi|158279940|gb|EDP05699.1| predicted protein [Chlamydomonas reinhardtii]
Length = 174
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q+ + V G+ W T L+ Y E FG++ A V ++N GR +GFGF+ F S E A K
Sbjct: 5 QSAKVFVGGLSWETTGEKLRAYMENFGSVREAFVSYNRNNGRPRGFGFVVFESPEVADKV 64
Query: 162 MLKKHKIGNRICDVR-------IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+ KH I R + + PE + G+ K+FVG L P + E+ LR+HF +
Sbjct: 65 VATKHMIDRREVEAKRAVPKEDAPEEKQQGSAPQRTKKIFVGGLAPTVDEAQLRQHFSDF 124
Query: 215 GAVVDVLI------PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVV 257
G V D ++ +P R F FVTF + + + G I DK + V
Sbjct: 125 GTVEDAVVMYDHENKRP-RGFGFVTFAEEEAVERVFSHGAVQTIADKPIEV 174
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 88 TQSKRSYP---------DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
++KR+ P S P + + V G+ T + L+++F FGT+E A V D
Sbjct: 76 VEAKRAVPKEDAPEEKQQGSAPQRTKKIFVGGLAPTVDEAQLRQHFSDFGTVEDAVVMYD 135
Query: 139 KNTGRSKGFGFIRFSSHES 157
R +GFGF+ F+ E+
Sbjct: 136 HENKRPRGFGFVTFAEEEA 154
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP------KPFREFAFVTFELDSVAKSL 243
++KVFVG L+ + T LR + E +G+V + + +P R F FV FE VA +
Sbjct: 6 SAKVFVGGLSWETTGEKLRAYMENFGSVREAFVSYNRNNGRP-RGFGFVVFESPEVADKV 64
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ I ++V A PK+ E +
Sbjct: 65 VATKHMIDRREVEAKRAVPKEDAPEEK 91
>gi|242024531|ref|XP_002432681.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
gi|212518151|gb|EEB19943.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
Length = 295
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 85 SSATQSKRSYPDNSGPVQN----------TDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
S T+ K P +G +N L V + W TD +L+E+F QFG +E +
Sbjct: 4 SGDTEMKEPDPQQNGSTENGTTESTNNDDRKLFVGRLSWETTDKELREHFSQFGEIESVS 63
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
VK D +GRS+GF FI F ES K M I N C P+ K K+F
Sbjct: 64 VKTDPASGRSRGFAFIVFKDVESIEKVMAAGDHIIN--CKKIDPKKAKA-----RHGKIF 116
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HV 248
VG L + +E D+R F +G +++V +P + F F+TFE + V L+ Q
Sbjct: 117 VGGLDVETSEEDIRNFFGQFGTILEVELPFDKQKNQQKNFCFITFESEQVTNDLLKQPKQ 176
Query: 249 NIKDKKVVVMEATPK 263
I K+V V +A PK
Sbjct: 177 TINGKEVDVKKANPK 191
>gi|393235474|gb|EJD43029.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 351
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 10/173 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W +D L+ YF QFG ++ + D+ TGRS+GF F+ F + M+++
Sbjct: 1 MFVGGLNWDTSDEGLRNYFSQFGKVDACTIMRDQ-TGRSRGFAFLTFEDPAAVNAVMVRE 59
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E K+FVG L P +T LR +F +G VVD +
Sbjct: 60 HYLDGKIID---PKRAIPRQEHHRTQKLFVGGLAPTVTTESLRAYFAQFGKVVDATVMVD 116
Query: 223 --PKPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
+ F FVTFE +D++ + L H+ I K + V A P+ M ++D+
Sbjct: 117 RDSSRSKGFGFVTFEDIDNIERLLGLGHLEIDGKMIDVKLAQPRGAMMAQRDS 169
>gi|444721584|gb|ELW62314.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 301
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 LFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDTVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIGPQRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
R F F+T+ + K L+ + I K V A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRCHQIGSGKCEVKIAQPKE 193
>gi|259149364|emb|CAY86168.1| Hrp1p [Saccharomyces cerevisiae EC1118]
Length = 534
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|151945512|gb|EDN63753.1| cleavage and polyadenylation factor CF I component involved in
pre-mRNA 3'-end processing [Saccharomyces cerevisiae
YJM789]
gi|190407229|gb|EDV10496.1| nuclear polyadenylated RNA-binding protein 4 [Saccharomyces
cerevisiae RM11-1a]
gi|207341455|gb|EDZ69508.1| YOL123Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270127|gb|EEU05357.1| Hrp1p [Saccharomyces cerevisiae JAY291]
Length = 534
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|365763141|gb|EHN04671.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|356552729|ref|XP_003544715.1| PREDICTED: uncharacterized protein LOC100788515 [Glycine max]
Length = 478
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W D LKEYF ++G + A + D+ TGR++GFGF+ F+ +A + ++ K
Sbjct: 8 LFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKI-GTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P +S I G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQTINRQSGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V + L + K V V A PK+
Sbjct: 128 QFGTIADVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + + V G+P T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 102 PGRTKKIFVGGLPSTITESDFKKYFDQFGTIADVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 160 KAMLKK-HKIGNRICDVR--IPESTKIG-TEEPV 189
+ + K H++ ++ +V+ +P+ G T P+
Sbjct: 162 RVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPL 195
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D + L+E+F YG V++ +I + R F FV F S A+ +I
Sbjct: 7 KLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|297796435|ref|XP_002866102.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
gi|297311937|gb|EFH42361.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
Length = 449
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 44/238 (18%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + +++K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMEK 67
Query: 166 HKIGNRICDVR--IP---------ESTKIGTEEPV-------ASKVFVGSLTPDLTESDL 207
H I R + + +P ++ I PV K+FVG L +TE +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIQLMSPVHGGGGGRTKKIFVGGLPSSITEEEF 127
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +F+ +G + DV++ +P R F F+TF+ D+V + L + K V V A
Sbjct: 128 KNYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 186
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGG------NGYYDNRQQQQGGYNN 312
PK E NN RSP+ YGGG N Y++N G YNN
Sbjct: 187 VPK----ETSPVSNN--------RSPLPGGLNYGGGSNRISANSYFNNFAPGPGFYNN 232
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F YG VV+ +I + R F F+ F V++ +I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIME 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|242069255|ref|XP_002449904.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
gi|241935747|gb|EES08892.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
Length = 450
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L +YF+++G +E A V D+ TGRS+GFGFI F+ A +++K
Sbjct: 8 LFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMFADPAVAKHVIMEK 67
Query: 166 HKIGNRICDVRIP------------ESTKIGTEEPVA-SKVFVGSLTPDLTESDLREHFE 212
H I R+ + + + G + P K+FVG L ++T+ D+ +HF+
Sbjct: 68 HMIDGRMVEAKKAIARDDHHSLNNIHGSAHGLQRPKHRKKIFVGGLASNVTKEDVIKHFK 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G ++DV++ +P R F F+T++ D+V ++LI +K K V V A K+
Sbjct: 128 QFGTIIDVVVVYDHHTQRP-RGFGFITYDSEDAVHRALIKTFQKLKGKMVEVKRAIRKE 185
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + V G+ T D+ ++F+QFGT+ V D +T R +GFGFI + S ++
Sbjct: 102 PKHRKKIFVGGLASNVTKEDVIKHFKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVH 161
Query: 160 KAMLKK-HKIGNRICDVR 176
+A++K K+ ++ +V+
Sbjct: 162 RALIKTFQKLKGKMVEVK 179
>gi|6324449|ref|NP_014518.1| Hrp1p [Saccharomyces cerevisiae S288c]
gi|2500574|sp|Q99383.1|HRP1_YEAST RecName: Full=Nuclear polyadenylated RNA-binding protein 4;
AltName: Full=Cleavage factor IB; Short=CFIB
gi|1016290|gb|AAA79097.1| nuclear polyadenylated RNA-binding protein [Saccharomyces
cerevisiae]
gi|1420003|emb|CAA99142.1| HRP1 [Saccharomyces cerevisiae]
gi|1550721|emb|CAA64546.1| RNA binding protein [Saccharomyces cerevisiae]
gi|1657691|gb|AAB18142.1| Hrp1p [Saccharomyces cerevisiae]
gi|285814768|tpg|DAA10661.1| TPA: Hrp1p [Saccharomyces cerevisiae S288c]
gi|349581049|dbj|GAA26207.1| K7_Hrp1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296592|gb|EIW07694.1| Hrp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 534
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|323307358|gb|EGA60637.1| Hrp1p [Saccharomyces cerevisiae FostersO]
Length = 534
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|323303112|gb|EGA56914.1| Hrp1p [Saccharomyces cerevisiae FostersB]
Length = 550
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|242093370|ref|XP_002437175.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
gi|241915398|gb|EER88542.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
Length = 414
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+A+GN A D+ G + + V G+ W T+ ++F+++G + + + DK
Sbjct: 75 EAAGNVDAGGEDGRDADSGGGDSSGKIFVGGVAWETTEETFTKHFQKYGAITDSVIMKDK 134
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGS 197
+T +GFGF+ FS + + H I R +V+ +P+ + P K+FVG
Sbjct: 135 HTRMPRGFGFVTFSDPSVLDRVLEDAHVIDGRTVEVKRTVPKEEMSSKDGPKTKKIFVGG 194
Query: 198 LTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNI 250
+ LTE L+EHF YG VV+ I R F FVTFE + + ++ G+ ++
Sbjct: 195 IPSSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDL 254
Query: 251 KDKKVVVMEATPKK 264
K+V + +A PKK
Sbjct: 255 GGKQVEIKKAEPKK 268
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T K GP + + V GIP + T++ LKE+F +G + + +D +TGRS+GF
Sbjct: 173 TVPKEEMSSKDGP-KTKKIFVGGIPSSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGF 231
Query: 148 GFIRFSSHESALKAML--KKHKIGNRICDVRIPESTKIG 184
GF+ F S ++ + M + H +G + +++ E K G
Sbjct: 232 GFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPG 270
>gi|363748813|ref|XP_003644624.1| hypothetical protein Ecym_2050 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888257|gb|AET37807.1| Hypothetical protein Ecym_2050 [Eremothecium cymbalariae
DBVPG#7215]
Length = 541
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T+++L+EYF ++GT+ + D TGRS+GFGF+ F+ S + + +
Sbjct: 173 MFIGGLNWETTEDNLREYFSKYGTVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKTQ 232
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + ++ D P+ E+ K+FVG + PD+ + E F +G+++D +++
Sbjct: 233 HILDGKVID---PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSEWGSIIDAQLMLD 289
Query: 224 KPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
K R F F+T++ D+V + + + K K++ + A P++ +R N
Sbjct: 290 KDTGRSRGFGFITYDSPDAVDRVCQNKFIEFKGKRIEIKRAEPRQVQKQRTTN 342
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSLIG 245
K+F+G L + TE +LRE+F YG V +V I + R F F++F + SV + +
Sbjct: 172 KMFIGGLNWETTEDNLREYFSKYGTVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKT 231
Query: 246 QHVNIKDKKVVVMEATPKKKM-NERQD 271
QH I D KV+ PK+ + E QD
Sbjct: 232 QH--ILDGKVI----DPKRAIPREEQD 252
>gi|351709446|gb|EHB12365.1| Heterogeneous nuclear ribonucleoprotein D0 [Heterocephalus glaber]
Length = 271
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+ F +FG + +K+D TGRS+GFGF+ ES K M K+HK+
Sbjct: 113 GLSWDTTKKDLKDCFSKFGEVVDCTLKLDPITGRSRGFGFVLLKESESVDKVMDQKEHKL 172
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E ++RE+F +G V + +P
Sbjct: 173 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEENIREYFGGFGEVESIELPMDNKT 229
Query: 224 KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 230 NKRRGFCFITFKEEEPVKKIM 250
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFVT 233
++T+ T + K+F+G L+ D T+ DL++ F +G VVD + P R F FV
Sbjct: 95 KTTQKATAQREEWKMFMGGLSWDTTKKDLKDCFSKFGEVVDCTLKLDPITGRSRGFGFVL 154
Query: 234 F-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQ 292
E +SV K + + + K V++ K M ++ + F +P N R+
Sbjct: 155 LKESESVDKVMDQKEHKLNGK---VIDPKRAKAMKTKEPVKKIFV-GGLSPDTPEENIRE 210
Query: 293 YGGGNGYYDNRQQQQGGYNNKRR 315
Y GG G ++ + NKRR
Sbjct: 211 YFGGFGEVESIELPMDNKTNKRR 233
>gi|390457874|ref|XP_003732018.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Callithrix jacchus]
Length = 320
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P+ P Q L + G+ + TD L+ +FEQ+GTL + V D NT RS+GFGF
Sbjct: 2 SKSESPEE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTYCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V + +FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDRRVVEPKRAVSREDSQRPGAHLTVKN-IFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPK---PFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V+++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMMDRGSGKKRGFAFVTFDNHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKM 266
+A K++M
Sbjct: 179 KALSKQEM 186
>gi|291415465|ref|XP_002723972.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGMKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|323331635|gb|EGA73049.1| Hrp1p [Saccharomyces cerevisiae AWRI796]
Length = 521
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 130 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 187
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 188 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 242
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 243 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 302
Query: 258 MEATPK 263
A P+
Sbjct: 303 KRAEPR 308
>gi|255574941|ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532245|gb|EEF34049.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T++ LK+YF Q+G + V DK TGR +GFGF+ F+ + + K
Sbjct: 8 LFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNILDRVLQDK 67
Query: 166 HKIGNRICDVRIPES-------TKIGTEEPV----------ASKVFVGSLTPDLTESDLR 208
H I R + + S + G P K+FVG L P LT+ + R
Sbjct: 68 HTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPALTDDEFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE YG V DV+I +P R F F++F+ D+V + L ++ K+V V A
Sbjct: 128 QYFEAYGLVTDVVIMYDQNTQRP-RGFGFISFDNEDAVDRVLHKTFHDLNGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 95 PDNSGP---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIR 151
P NSG ++ + V G+P TD++ ++YFE +G + + D+NT R +GFGFI
Sbjct: 98 PRNSGSGGNIRTKKIFVGGLPPALTDDEFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFIS 157
Query: 152 FSSHESALKAMLKK--HKIGNRICDVR 176
F +E A+ +L K H + + +V+
Sbjct: 158 F-DNEDAVDRVLHKTFHDLNGKQVEVK 183
>gi|344266091|ref|XP_003405114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Loxodonta africana]
Length = 320
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +S+ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|401623736|gb|EJS41824.1| hrp1p [Saccharomyces arboricola H-6]
Length = 540
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 145 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 202
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 203 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 257
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 258 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 317
Query: 258 MEATPK 263
A P+
Sbjct: 318 KRAEPR 323
>gi|323346676|gb|EGA80960.1| Hrp1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 576
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>gi|195500849|ref|XP_002097550.1| GE24428 [Drosophila yakuba]
gi|194183651|gb|EDW97262.1| GE24428 [Drosophila yakuba]
Length = 345
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 20/194 (10%)
Query: 82 SGNSSATQSKRSYPDN-SGPVQNTD----LVVLGIPWTFTDNDLKEYFEQFGTLEFANVK 136
+G++ A S DN SG D L V G+ W T+ +L+++F ++G +E NVK
Sbjct: 29 NGDAGAAGSTNGSSDNQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVK 88
Query: 137 VDKNTGRSKGFGFIRFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFV 195
D TGRS+GF FI F++ E+ K + + +H I ++ D P+ K K+FV
Sbjct: 89 TDPQTGRSRGFAFIVFTNTEAIDKVSAVDEHIINSKKVD---PKKAK-----ARHGKIFV 140
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLIP----KPFRE-FAFVTFELDSVAKSLIGQ-HVN 249
G LT ++T+ +++ +F +G +V+V +P K R+ F F+TF+ + V L+
Sbjct: 141 GGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK 200
Query: 250 IKDKKVVVMEATPK 263
I K+V V ATPK
Sbjct: 201 IAGKEVDVKRATPK 214
>gi|395816803|ref|XP_003781879.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 532
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q TD + + G+ W + DL EY +FG + +K D +GRS+GFGF+ F
Sbjct: 101 NASKDQQTDGKMFIGGLSWDTSKRDLTEYLSRFGEVVDCIIKTDPVSGRSRGFGFVLFKD 160
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D P+ K E+ KVFVG L+PD ++ ++++F
Sbjct: 161 AASVDKVLELKEHKLDGKLID---PQRAKPLKEKEPPKKVFVGGLSPDTSKEQIKDYFGA 217
Query: 214 YGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
+G + ++ +P+ R F FVT+ E + V K L ++ +I K + A PK+
Sbjct: 218 FGEIENIELPRDRKTNERRGFCFVTYTEGEPVKKLLESRYHHIGSGKCEIKVAQPKEVYR 277
Query: 268 ERQ 270
++Q
Sbjct: 278 QQQ 280
>gi|148671985|gb|EDL03932.1| mCG15678, isoform CRA_c [Mus musculus]
Length = 335
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
S SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+
Sbjct: 13 STVMSKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 70
Query: 146 GFGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTP 200
GFGF+ +++ E AM + HK+ R+ + V +S + G V K+FVG +
Sbjct: 71 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKE 129
Query: 201 DLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKK 254
D E LR++FE YG V++++ + R FAFVTF + DSV K +I ++ +
Sbjct: 130 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 189
Query: 255 VVVMEATPKKKM 266
V +A K++M
Sbjct: 190 CEVRKALSKQEM 201
>gi|296813155|ref|XP_002846915.1| heterogeneous nuclear ribonucleoprotein HRP1 [Arthroderma otae CBS
113480]
gi|238842171|gb|EEQ31833.1| heterogeneous nuclear ribonucleoprotein HRP1 [Arthroderma otae CBS
113480]
Length = 482
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 22/185 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ M+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTVNTVMIDP 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
+ IP E+ SK+FVG ++ + TE + ++ F +G VVD +
Sbjct: 61 KRA--------IPRD-----EQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMID 107
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR- 278
+P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R R
Sbjct: 108 KDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRLGKRG 166
Query: 279 -RNDR 282
R+DR
Sbjct: 167 FRDDR 171
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A
Sbjct: 71 RTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEA 129
Query: 162 ML 163
L
Sbjct: 130 TL 131
>gi|224089693|ref|XP_002308799.1| predicted protein [Populus trichocarpa]
gi|222854775|gb|EEE92322.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ LKEYF FG + A + D+ TGR++GFGF+ F+ A + +++K
Sbjct: 8 LFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVAERVVMEK 67
Query: 166 HKIGNRICDVR--IP----------ESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P S+ G+ P + K+FVG L +TESD R++F+
Sbjct: 68 HLIDGRNVEAKKAVPREDQNTLNKNSSSVNGSPGPARTKKIFVGGLASTVTESDFRKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ + ++ + + + K V V A PK+
Sbjct: 128 QFGVITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D ++YF+QFG + V D NT R +GFGFI + S E+
Sbjct: 101 GPARTKKIFVGGLASTVTESDFRKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 DRVLHKTFHELNGKMVEVK 179
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F +G V++ +I K R F FV F +VA+ ++ +
Sbjct: 7 KLFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVAERVVME 66
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDN 272
I + V +A P++ N N
Sbjct: 67 KHLIDGRNVEAKKAVPREDQNTLNKN 92
>gi|432865306|ref|XP_004070518.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oryzias latipes]
Length = 329
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D N+ RS+GFGF+ +SS +
Sbjct: 9 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVD 68
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D ES LR++F+ +
Sbjct: 69 AAMSARPHKVDGRVVEPKRAVSREDSNRPGAHITV-KKIFVGGIKEDTEESHLRDYFQQF 127
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V+D++ + R FAFVTF + DSV + +I ++ I V +A K++M
Sbjct: 128 GKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKALTKQEM 185
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQ 246
K+F+G L+ + T+ LR HFE +G + D ++ K R F FVT+ + +
Sbjct: 14 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMSA 73
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNR 273
+ D +VV PK+ ++ NR
Sbjct: 74 RPHKVDGRVV----EPKRAVSREDSNR 96
>gi|326531676|dbj|BAJ97842.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++F ++G + + + DK+T +GFGF+ FS K + +
Sbjct: 64 IFVGGVAWETTEESFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE 123
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG L LTE DLR+HF YG VV+ I
Sbjct: 124 HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIM 183
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + +I G+ ++ K+V + +A PKK
Sbjct: 184 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 231
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+P T T++DL+++F +G + + VD +TGRS+GFGF+ F S +S
Sbjct: 147 GP-KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 205
Query: 159 LKAML--KKHKIGNRICDVRIPESTKIG 184
+ + + +G + +++ E K G
Sbjct: 206 ERVISEGRMRDLGGKQVEIKKAEPKKHG 233
>gi|326487243|dbj|BAJ89606.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506666|dbj|BAJ91374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++F ++G + + + DK+T +GFGF+ FS K + +
Sbjct: 64 IFVGGVAWETTEESFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE 123
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG L LTE DLR+HF YG VV+ I
Sbjct: 124 HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIM 183
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + +I G+ ++ K+V + +A PKK
Sbjct: 184 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 231
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+P T T++DL+++F +G + + VD +TGRS+GFGF+ F S +S
Sbjct: 147 GP-KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 205
Query: 159 LKAML--KKHKIGNRICDVRIPESTKIG 184
+ + + +G + +++ E K G
Sbjct: 206 ERVISEGRMRDLGGKQVEIKKAEPKKHG 233
>gi|195390397|ref|XP_002053855.1| GJ23113 [Drosophila virilis]
gi|194151941|gb|EDW67375.1| GJ23113 [Drosophila virilis]
Length = 343
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F +FG +E NVK D TGRS+GF FI F++ E+ + + +
Sbjct: 59 LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIEQVSAAE 118
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 119 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPF 170
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 171 DKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPK 215
>gi|195113435|ref|XP_002001273.1| GI10695 [Drosophila mojavensis]
gi|193917867|gb|EDW16734.1| GI10695 [Drosophila mojavensis]
Length = 342
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 20/180 (11%)
Query: 96 DNSGPVQNT-----DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
+N+ P N L V G+ W T+ +L+++F +FG +E NVK D TGRS+GF FI
Sbjct: 44 ENTAPASNQRDDDRKLFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFI 103
Query: 151 RFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLRE 209
F++ E+ + + ++H I ++ D P+ K K+FVG LT ++++ +++
Sbjct: 104 VFTNTEAIDQVSAAEEHIINSKKVD---PKKAKA-----RHGKIFVGGLTTEISDEEIKT 155
Query: 210 HFEYYGAVVDVLIP----KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+F +G +V+V +P K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 156 YFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPK 215
>gi|148227778|ref|NP_001080390.1| heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Xenopus
laevis]
gi|28302301|gb|AAH46692.1| Hnrpa2b1 protein [Xenopus laevis]
Length = 346
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+GTL V D + RS+GFGF+ FS AM +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R FAFVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
N
Sbjct: 190 N 190
>gi|1710623|sp|P51989.1|RO21_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 1;
AltName: Full=hnRNP A2(A)
gi|214741|gb|AAA49948.1| ribonucleoprotein [Xenopus laevis]
Length = 346
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+GTL V D + RS+GFGF+ FS AM +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R FAFVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
N
Sbjct: 190 N 190
>gi|254566735|ref|XP_002490478.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|238030274|emb|CAY68197.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|328350869|emb|CCA37269.1| Nuclear polyadenylated RNA-binding protein 4 [Komagataella pastoris
CBS 7435]
Length = 462
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 20/180 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T+ L+ YF QFG + + D TGRS+GFGF+ F+ S + + K+
Sbjct: 155 MFIGGLNWETTEETLRNYFGQFGDITDLTIMRDNATGRSRGFGFLTFTKTASVDEVLKKQ 214
Query: 166 HKIGNRICDVR--IP--ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-- 219
H + ++ D + IP E K G K+FVG + ++TE D ++F +G ++D
Sbjct: 215 HVLDGKLIDPKRAIPREEQDKTG-------KIFVGGIAAEVTEEDFTDYFSQFGTIIDAQ 267
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNN 275
++I K R F FVT++ D+V + ++V +K + + + A P+ N++Q+ R N
Sbjct: 268 LMIDKDTGRSRGFGFVTYDSPDAVDRVCANKYVPLKGRSMEIKRAEPR---NQQQNQRTN 324
>gi|344266093|ref|XP_003405115.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Loxodonta africana]
Length = 370
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +S+ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|291389273|ref|XP_002711072.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|321469931|gb|EFX80909.1| hypothetical protein DAPPUDRAFT_224415 [Daphnia pulex]
Length = 464
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS-SHESALKAMLK 164
+ + G+ W T ++L YF Q+G + V + TGRS+GFGFI F+ + L
Sbjct: 22 MFIGGLSWETTRDNLLRYFSQYGEVVDCVVMKNPETGRSRGFGFITFADPNNVGLVLQNT 81
Query: 165 KHKIGNRICD----------VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
H + NR D VR P + +GT KVF+G L +LTE+DLR F Y
Sbjct: 82 PHILDNRTIDPKPCNPRAEMVRAPRRS-MGTGN--GYKVFLGGLPSNLTETDLRNFFSQY 138
Query: 215 GAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
G V +V+I K R F F+TFE + G+H V+I K+V + +A P+
Sbjct: 139 GKVSEVVIMYDQEKKKSRGFGFLTFESEESVDRCTGEHYVSINGKQVEIKKAEPR 193
>gi|148671986|gb|EDL03933.1| mCG15678, isoform CRA_d [Mus musculus]
Length = 326
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
S SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+
Sbjct: 4 STVMSKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 61
Query: 146 GFGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTP 200
GFGF+ +++ E AM + HK+ R+ + V +S + G V K+FVG +
Sbjct: 62 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKE 120
Query: 201 DLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKK 254
D E LR++FE YG V++++ + R FAFVTF + DSV K +I ++ +
Sbjct: 121 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 180
Query: 255 VVVMEATPKKKM 266
V +A K++M
Sbjct: 181 CEVRKALSKQEM 192
>gi|390178412|ref|XP_003736644.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859438|gb|EIM52717.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 319
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F +FG +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 57 LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAG 116
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 117 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPF 168
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 169 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPK 213
>gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis]
Length = 949
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 24/204 (11%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + + G+ W TD L+ YFE +GT++ A V DK+TGR +GFGF+ F+ A K
Sbjct: 4 QEGKVFIGGLSWETTDQKLRAYFENYGTVQEAFVSYDKHTGRPRGFGFVVFADPIIADKV 63
Query: 162 MLKKHKIGNRICDVR--IP-ESTKIGTEEPVAS------KVFVGSLTPDLTESDLREHFE 212
+ +H I R + + +P + + + EE AS KVFVG L + E R +FE
Sbjct: 64 ISVQHTIDRREVEAKKALPKDESPVRKEEQAASGGHRTKKVFVGGLAATVDEDTFRAYFE 123
Query: 213 YYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKK 265
+G V D ++ K R F F+TF + ++ G I DK++ + A P+
Sbjct: 124 EFGLVDDAVVMFDHENKRPRGFGFITFADEESVDAVFARGTIQTIHDKQIEIKRAVPRDS 183
Query: 266 MNERQDNRNNFDRRNDRSRSPMSN 289
M R + RSPM++
Sbjct: 184 MPP--------SPRALQHRSPMAH 199
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 88 TQSKRSYPDNSGPVQNTD-----------LVVLGIPWTFTDNDLKEYFEQFGTLEFANVK 136
++K++ P + PV+ + + V G+ T ++ + YFE+FG ++ A V
Sbjct: 75 VEAKKALPKDESPVRKEEQAASGGHRTKKVFVGGLAATVDEDTFRAYFEEFGLVDDAVVM 134
Query: 137 VDKNTGRSKGFGFIRFSSHES 157
D R +GFGFI F+ ES
Sbjct: 135 FDHENKRPRGFGFITFADEES 155
>gi|156086826|ref|XP_001610820.1| ribonucleoprotein [Babesia bovis T2Bo]
gi|154798073|gb|EDO07252.1| ribonucleoprotein, putative [Babesia bovis]
Length = 306
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 16/185 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
+ G+ + T L+ YF ++GT+ + + DK TGRS+GFGF+ F S+++ALKA+L
Sbjct: 34 IFAGGLNRSTTAETLRNYFSKYGTVVHSEIVADKTTGRSRGFGFVTF-SNDAALKAVLAV 92
Query: 165 KHKIGNRICDVRIPESTK-----IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV-- 217
HKI N + DV+ + + T E V +++FVG + +++E + +++F YG+V
Sbjct: 93 SHKIDNVLADVKQAIKKERARDLLPTREEV-NRIFVGGIADNISEDEFKDYFGKYGSVLN 151
Query: 218 ----VDVLIPKPFREFAFVTFELDSVAKSLIGQHVNI-KDKKVVVMEATPKKKMNERQDN 272
VD KP R F FV +E + IG H + ++ + + P N + N
Sbjct: 152 YNFIVDKSTNKP-RGFGFVVYEDPADVDKAIGHHTKLGRNCEAKRAQPRPSSGKNMQPSN 210
Query: 273 RNNFD 277
R+NFD
Sbjct: 211 RDNFD 215
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVV--DVLIPKPF---REFAFVTFELDSVAKSLI 244
A K+F G L T LR +F YG VV +++ K R F FVTF D+ K+++
Sbjct: 31 AYKIFAGGLNRSTTAETLRNYFSKYGTVVHSEIVADKTTGRSRGFGFVTFSNDAALKAVL 90
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
I + V +A K++ + R +R
Sbjct: 91 AVSHKIDNVLADVKQAIKKERARDLLPTREEVNR 124
>gi|441632410|ref|XP_003252929.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Nomascus leucogenys]
Length = 426
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+G
Sbjct: 52 AVMSKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRG 109
Query: 147 FGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPD 201
FGF+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D
Sbjct: 110 FGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKED 168
Query: 202 LTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKV 255
E LR++FE YG V++++ + R FAFVTF + DSV K +I ++ +
Sbjct: 169 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 228
Query: 256 VVMEATPKKKM 266
V +A K++M
Sbjct: 229 EVRKALSKQEM 239
>gi|399218335|emb|CCF75222.1| unnamed protein product [Babesia microti strain RI]
Length = 436
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 28/186 (15%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ T L+++FE +G + V V+ N+GRS+GFGF+ F SH+ AL+A+L
Sbjct: 38 IFVGGLSQVTTQESLRQHFETYGEMTDCVVMVEANSGRSRGFGFVTFVSHD-ALEAVLAS 96
Query: 166 HKI-------GNRICDVRI--------PESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
+I + C + P++ ++G K+FVG L PDLT + RE+
Sbjct: 97 KQIVDGKEVDCKKACPREVMNSNNGALPKAAQVGVFR--TDKIFVGGL-PDLTNEEFREY 153
Query: 211 FEYYGAVVDVLIP------KPFREFAFVTFELDSVAKSLIGQH--VNIKDKKVVVMEATP 262
FE +G V++ + KP R F F+TFE SV +I ++ +K K V V +ATP
Sbjct: 154 FEKFGTVLEATLMVDKNTNKP-RGFGFITFESPSVVNEVIRRYNEHTLKGKWVEVKKATP 212
Query: 263 KKKMNE 268
++ +
Sbjct: 213 RESFTK 218
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
V TD + +G T+ + +EYFE+FGT+ A + VDKNT + +GFGFI F S
Sbjct: 131 VFRTDKIFVGGLPDLTNEEFREYFEKFGTVLEATLMVDKNTNKPRGFGFITFES 184
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 13/138 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI W +NDL +F QFG + VK D TGRS+GF F+ F++ E+ KA+ KK
Sbjct: 60 IFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKALAKK 119
Query: 166 H-KIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
++ + C+V+ +S + K+FVG L D TE LR+H E +G V ++ P
Sbjct: 120 DAELKGKKCEVKPAKSRE-------NKKLFVGGLPSDYTEELLRKHMEQFGRVEEIEWPF 172
Query: 224 ----KPFREFAFVTFELD 237
+ FAF+ FE D
Sbjct: 173 DKVNNKRKNFAFIVFEDD 190
>gi|74204146|dbj|BAE39838.1| unnamed protein product [Mus musculus]
Length = 320
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|148682805|gb|EDL14752.1| mCG117968 [Mus musculus]
Length = 317
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 7 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTNCVVMRDPNTKRSRGFGFVTYATVEEVD 66
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 67 AAMNARPHKVDGRVVEPKRTVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 125
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 126 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 183
>gi|102140031|gb|ABF70162.1| RNA-binding protein, putative [Musa acuminata]
Length = 465
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L++YF FG + A + D+ TGR++GFGF+ F+ + + +K
Sbjct: 8 LFIGGISWDTNEDSLRKYFSAFGEVVEAVIMKDRTTGRARGFGFVVFADPAVTERVVTEK 67
Query: 166 HKIGNRICDVR--IP-----------ESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHF 211
H I R+ + + +P S+ G+ P + K+FVG L+ +TE D +++F
Sbjct: 68 HTIDGRMVEAKKAVPRDDHQFLNKNSSSSIHGSPVPGHTKKIFVGGLSSTITEGDFKKYF 127
Query: 212 EYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +G + DV++ +P R F F+T++ D+V K L+ + K V V A PK+
Sbjct: 128 DQFGTITDVVVMYDHNTQRP-RGFGFITYDSEDAVDKVLLNAFHELNGKMVEVKRAVPKE 186
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + V G+ T T+ D K+YF+QFGT+ V D NT R +GFGFI + S ++
Sbjct: 103 PGHTKKIFVGGLSSTITEGDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVD 162
Query: 160 KAMLKK-HKIGNRICDVR 176
K +L H++ ++ +V+
Sbjct: 163 KVLLNAFHELNGKMVEVK 180
>gi|348521586|ref|XP_003448307.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oreochromis niloticus]
Length = 332
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D N+ RS+GFGF+ +SS +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D ES LR++F+ +
Sbjct: 70 AAMSARPHKVDGRVVEPKRAVSREDSNRPGAHITV-KKIFVGGIKEDTEESHLRDYFQQF 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V+D++ + R FAFVTF + DSV + +I ++ I V +A K++M
Sbjct: 129 GKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKALTKQEM 186
>gi|387016398|gb|AFJ50318.1| HNRPA1 protein [Crotalus adamanteus]
Length = 212
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +S+ E
Sbjct: 23 PEQLRKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVD 82
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 83 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 141
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 142 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 199
>gi|327284183|ref|XP_003226818.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Anolis carolinensis]
Length = 386
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 29 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 88
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 89 EEVDAAMAARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 147
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 148 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 207
Query: 265 KMNERQDNRN 274
+M RN
Sbjct: 208 EMQTATAQRN 217
>gi|223647556|gb|ACN10536.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 344
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F S K + K
Sbjct: 83 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAVSVDKVLEQK 142
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R D P+ +EPV K+FVG L PD + ++E+F +G + + +P+
Sbjct: 143 EHRLDGRQID---PKKAMAMKKEPV-KKIFVGGLNPDTDKEVIQEYFGTFGEIETIELPQ 198
Query: 225 -----PFREFAFVTFELDS-VAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T++ ++ V K L + N+ K + A PK+
Sbjct: 199 DPKTEKRRGFVFITYKDETPVKKVLEKKFHNVSGSKCEIKIAQPKE 244
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVA 240
E A K+FVG L+ D ++ DL+++F +G V D I R F F+ F E SV
Sbjct: 77 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAVSVD 136
Query: 241 KSLIGQH-----VNIKDKKVVVMEATPKKKM 266
K L + I KK + M+ P KK+
Sbjct: 137 KVLEQKEHRLDGRQIDPKKAMAMKKEPVKKI 167
>gi|190360152|sp|P0C7M2.1|RA1L3_HUMAN RecName: Full=Putative heterogeneous nuclear ribonucleoprotein
A1-like 3; Short=hnRNP A1-like 3; AltName: Full=hnRNP
core protein A1-like 3
gi|119621694|gb|EAX01289.1| hCG2020860, isoform CRA_b [Homo sapiens]
gi|119621695|gb|EAX01290.1| hCG2020860, isoform CRA_b [Homo sapiens]
Length = 320
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|22328624|ref|NP_193166.2| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|18152698|emb|CAC83517.1| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|110740752|dbj|BAE98475.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|332658011|gb|AEE83411.1| ribonucleoprotein 1 [Arabidopsis thaliana]
Length = 411
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+E+F +G + A V DK TGR +GFGF+ FS + + +K
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 166 HKIGNRICDVRIPES-----------------TKIGTEEPVASKVFVGSLTPDLTESDLR 208
H I R DV+ S + G K+FVG L P LT+ + R
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEAT 261
++FE YG V DV I +P R F FV+F+ + S++ + ++ K+V V A
Sbjct: 128 QYFEVYGPVTDVAIMYDQATNRP-RGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVV------DVLIPKPFREFAFVTFELDSVAKSLIG 245
K+FVG ++ + E LREHF YG V D L +P R F FV F SV ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRP-RGFGFVIFSDPSVLDRVLQ 65
Query: 246 QHVNIKDKKVVVMEATPKKK 265
+ +I ++V V A +++
Sbjct: 66 EKHSIDTREVDVKRAMSREE 85
>gi|414878723|tpg|DAA55854.1| TPA: hypothetical protein ZEAMMB73_809994, partial [Zea mays]
Length = 176
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T LVVLGIPW L+EY +FG L+ V ++++GRS+GFG++ F+S + A +
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMAKFGPLDDCVVMKERSSGRSRGFGYVTFASADDAKNVLD 62
Query: 164 KKHKIGNRICDVRIP----ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+H +G+R +V+I E GT++ A+++FV + + ES R HFE +G ++D
Sbjct: 63 CEHVLGSRTLEVKIATPKEEMKSQGTKK--ATRIFVARIPQSVDESMFRRHFEAFGEILD 120
Query: 220 VLIPK 224
+ +PK
Sbjct: 121 LYMPK 125
>gi|133256|sp|P21522.1|ROA1_SCHAM RecName: Full=Heterogeneous nuclear ribonucleoprotein A1, A2/B1
homolog
gi|10107|emb|CAA38481.1| mammalian A1, A2 /B1 hnRNP homologue [Schistocerca americana]
Length = 342
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS-S 154
D+ P L + G+ + TD LK++FEQ+G + V D T RS+GFGFI +S +
Sbjct: 9 DHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRA 68
Query: 155 HESALKAMLKKHKIGNRICDV-RIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHF 211
H + HK+ R+ + R T+IG E A+ K+FVG + ++ E+DLR++F
Sbjct: 69 HMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF 128
Query: 212 EYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+ YG VV I + R FAFV F + D V K + ++ I+ K + V +A PK
Sbjct: 129 KQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>gi|321459101|gb|EFX70158.1| hypothetical protein DAPPUDRAFT_189289 [Daphnia pulex]
Length = 334
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D G ++ L V G+ W TD +L+E+F ++G +E VK+D TGRS+GF F+ F S
Sbjct: 60 DPLGKDEDRKLFVGGLSWATTDKELREHFGKYGEIESITVKMDPQTGRSRGFAFLVFKSA 119
Query: 156 ESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
E+ K M +H I + D P+ K + K+FVG L D TE +R F +
Sbjct: 120 ENLDKVMNAGEHIINGKRVD---PKKAKA-----RSGKIFVGGLPQDTTEETIRSFFGTF 171
Query: 215 GAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
G +V++ +P + F F+T++ ++V L+ I K+V V +ATPK
Sbjct: 172 GNIVEIEMPFDRVKNQRKNFCFITYDNENVVFDLLKTPKQVINGKEVDVKKATPK 226
>gi|154183823|gb|ABS70764.1| Hnrp1 [Haplochromis burtoni]
Length = 289
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 14/188 (7%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S+ S P P Q L + G+ + TD L+ +FEQ+GTL V D N+ RS+GFGF
Sbjct: 2 SRESVPRE--PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +SS + AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYSSVQEVDAAMSARPHKVDGRVVEPKRAVSREDSNRPGAHITV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVM 258
S LR++F+ +G V+D++ + R FAFVTF + DSV + +I ++ I V
Sbjct: 119 SHLRDYFQQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVR 178
Query: 259 EATPKKKM 266
+A K++M
Sbjct: 179 KALTKQEM 186
>gi|111306451|gb|AAI21134.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|385454|gb|AAB26988.1| SqdA [Drosophila melanogaster]
Length = 321
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 17/166 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA-- 115
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA--SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
D I S K+ ++ A K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 116 -------ADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 224 ----KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 169 LDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|444513904|gb|ELV10489.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Tupaia
chinensis]
Length = 432
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 5 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 64
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 65 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 123
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 124 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 181
>gi|426219507|ref|XP_004003963.1| PREDICTED: uncharacterized protein LOC101101951 [Ovis aries]
Length = 503
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
++ + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K +
Sbjct: 290 SSKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 349
Query: 163 -LKKHKIGNRICDVRIPESTKI--GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
LK+HK+ ++ D P+ K G E P KVFVG L+PD +E ++E+F +G + +
Sbjct: 350 ELKEHKLDGKLID---PKRAKALNGKEPP--KKVFVGVLSPDTSEEQIKEYFGAFGEIEN 404
Query: 220 VLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 405 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 455
>gi|291394513|ref|XP_002713753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|89257430|gb|ABD64922.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 426
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
+ L + GI W T++ L+EYF+ FG + A + D+ TGR++GFGF+ F+ A + +
Sbjct: 4 SCKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFADPTVAERVV 63
Query: 163 LKKHKIGNRICDVR--IP----------ESTKIGTEEPVAS-KVFVGSLTPDLTESDLRE 209
L +H I +I + + +P S+ G+ P S K+FVG L +TE++ ++
Sbjct: 64 LIRHVIDGKIVEAKKAVPRDDHVVLNRSSSSLQGSPGPATSKKIFVGGLASSVTEAEFKK 123
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATP 262
+F +G + DV++ +P R F F++FE + ++ + + + K V V A P
Sbjct: 124 YFAQFGTITDVVVMYDHRTQRP-RGFGFISFESEEAVDRVLQRTFHELNGKMVEVKLAVP 182
Query: 263 KK 264
K+
Sbjct: 183 KE 184
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
+S S + GP + + V G+ + T+ + K+YF QFGT+ V D T R +GFG
Sbjct: 90 RSSSSLQGSPGPATSKKIFVGGLASSVTEAEFKKYFAQFGTITDVVVMYDHRTQRPRGFG 149
Query: 149 FIRFSSHESALKAMLKK-HKIGNRICDVRI 177
FI F S E+ + + + H++ ++ +V++
Sbjct: 150 FISFESEEAVDRVLQRTFHELNGKMVEVKL 179
>gi|24646609|ref|NP_731826.1| squid, isoform A [Drosophila melanogaster]
gi|11038|emb|CAA44503.1| hrp40.1 [Drosophila melanogaster]
gi|21428420|gb|AAM49870.1| LD09691p [Drosophila melanogaster]
gi|23171185|gb|AAF54964.2| squid, isoform A [Drosophila melanogaster]
gi|220943526|gb|ACL84306.1| sqd-PA [synthetic construct]
gi|220953540|gb|ACL89313.1| sqd-PA [synthetic construct]
Length = 321
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 17/166 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA-- 115
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA--SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
D I S K+ ++ A K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 116 -------ADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 224 ----KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|426234977|ref|XP_004011468.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Ovis aries]
Length = 319
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|74141832|dbj|BAE40987.1| unnamed protein product [Mus musculus]
Length = 320
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 G--AVVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GEIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|380792669|gb|AFE68210.1| heterogeneous nuclear ribonucleoprotein A1 isoform a, partial
[Macaca mulatta]
Length = 317
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|4504445|ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo sapiens]
gi|6754220|ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus musculus]
gi|114052384|ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|116175259|ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa]
gi|148529006|ref|NP_001091892.1| heterogeneous nuclear ribonucleoprotein A1-like 1 [Pan troglodytes]
gi|308193354|ref|NP_001184040.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|73996139|ref|XP_848386.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Canis lupus familiaris]
gi|332864208|ref|XP_003318234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
gi|354503661|ref|XP_003513899.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Cricetulus
griseus]
gi|402886231|ref|XP_003906538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Papio
anubis]
gi|410058477|ref|XP_003954396.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Pan troglodytes]
gi|410964599|ref|XP_003988841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Felis catus]
gi|426224335|ref|XP_004006327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Ovis aries]
gi|1350822|sp|P49312.2|ROA1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=HDP-1; AltName:
Full=Helix-destabilizing protein; AltName:
Full=Single-strand-binding protein; AltName:
Full=Topoisomerase-inhibitor suppressed; AltName:
Full=hnRNP core protein A1
gi|156637352|sp|A5A6H4.1|ROA1_PANTR RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|172046785|sp|P09867.2|ROA1_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=Unwinding protein 1; Short=UP1;
AltName: Full=hnRNP core protein A1
gi|70819|pir||DDRT helix-destabilizing protein - rat
gi|87651|pir||S04617 heterogeneous ribonuclear particle protein A1 - human
gi|193324|gb|AAA37633.1| RNA binding protein [Mus musculus]
gi|296650|emb|CAA31191.1| hnrnp a1 protein [Homo sapiens]
gi|496898|emb|CAA56072.1| hnRNPcore protein A1 [Homo sapiens]
gi|1711242|dbj|BAA13162.1| TIS [Mus musculus]
gi|12803103|gb|AAH02355.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|12841583|dbj|BAB25267.1| unnamed protein product [Mus musculus]
gi|15082486|gb|AAH12158.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|16307046|gb|AAH09600.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|21707258|gb|AAH33714.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|26353286|dbj|BAC40273.1| unnamed protein product [Mus musculus]
gi|47125420|gb|AAH70315.1| HNRPA1 protein [Homo sapiens]
gi|49257442|gb|AAH73162.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|49522847|gb|AAH74502.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|51490837|emb|CAH18571.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|51873929|gb|AAH80675.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|53236995|gb|AAH83136.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|55930978|gb|AAH52296.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|56971262|gb|AAH88150.1| Hnrpa1 protein [Rattus norvegicus]
gi|67968511|dbj|BAE00617.1| unnamed protein product [Macaca fascicularis]
gi|74180018|dbj|BAE36552.1| unnamed protein product [Mus musculus]
gi|74183107|dbj|BAE22518.1| unnamed protein product [Mus musculus]
gi|74184983|dbj|BAE39104.1| unnamed protein product [Mus musculus]
gi|74189079|dbj|BAE39302.1| unnamed protein product [Mus musculus]
gi|74204144|dbj|BAE39837.1| unnamed protein product [Mus musculus]
gi|74204330|dbj|BAE39920.1| unnamed protein product [Mus musculus]
gi|74204859|dbj|BAE20929.1| unnamed protein product [Mus musculus]
gi|74214152|dbj|BAE40333.1| unnamed protein product [Mus musculus]
gi|74214339|dbj|BAE40409.1| unnamed protein product [Mus musculus]
gi|86823844|gb|AAI05414.1| Heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|115371763|gb|ABI96206.1| ROA1 [Sus scrofa]
gi|119617167|gb|EAW96761.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617175|gb|EAW96769.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617176|gb|EAW96770.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|146741382|dbj|BAF62347.1| heterogeneous nuclear ribonucleoprotein A1, transcript variant 1
[Pan troglodytes verus]
gi|148671984|gb|EDL03931.1| mCG15678, isoform CRA_b [Mus musculus]
gi|149031879|gb|EDL86791.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|149031881|gb|EDL86793.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|158255662|dbj|BAF83802.1| unnamed protein product [Homo sapiens]
gi|208966454|dbj|BAG73241.1| heterogeneous nuclear ribonucleoprotein A1 [synthetic construct]
gi|296487907|tpg|DAA30020.1| TPA: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|335772612|gb|AEH58124.1| heterogeneous nuclear ribonucleoprotein A-like protein [Equus
caballus]
gi|380812306|gb|AFE78027.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
gi|380812308|gb|AFE78028.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
Length = 320
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|390178414|ref|XP_001359012.3| GA14206, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388859439|gb|EAL28155.3| GA14206, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 310
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F +FG +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 57 LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAG 116
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 117 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPF 168
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 169 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPK 213
>gi|74220381|dbj|BAE31416.1| unnamed protein product [Mus musculus]
Length = 320
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|328724864|ref|XP_001951157.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Acyrthosiphon pisum]
Length = 442
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA------L 159
L V G+ W L+ YF ++G + V + +GRS+GFGF+ F+ +
Sbjct: 15 LFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVLQNG 74
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+L I + C+ R + K + P KVF+G L ++TE+DLR F YG V++
Sbjct: 75 PHVLDGRTIDPKPCNPRTLQKPKRSSSYP---KVFLGGLPSNVTETDLRTFFSRYGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK--KKMNERQD 271
V+I K R F F++FE D + +H VN+ K+V + +A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDDDAVDRCVAEHFVNLSGKQVEIKKAEPRDSNKMNDVGA 191
Query: 272 NRNNFDRRN 280
N+ ++ N
Sbjct: 192 NQWGMNQNN 200
>gi|255560757|ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223539470|gb|EEF41060.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 412
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W T+ YF +FG + + + D+++GR +GFGF+ F+ +A + + +
Sbjct: 81 LFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFADLAAADRVLEED 140
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I +R +V+ +P A K+FVG + P LTE +L E+F YG +V+ I
Sbjct: 141 HIIDDRAVEVKRTVPREEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVYGNIVEHQIM 200
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + + G+ + K+V + +A PK+
Sbjct: 201 LDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIKKAVPKR 248
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 87 ATQSKRSYP----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
A + KR+ P + G V+ + V GIP T T+++L EYF +G + + +D TG
Sbjct: 147 AVEVKRTVPREEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVYGNIVEHQIMLDHKTG 206
Query: 143 RSKGFGFIRFSSHESA--LKAMLKKHKIGNRICDVR 176
RS+GFGF+ F + +S + + + H++G + +++
Sbjct: 207 RSRGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIK 242
>gi|148671983|gb|EDL03930.1| mCG15678, isoform CRA_a [Mus musculus]
Length = 371
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 8 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 67
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 68 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 126
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 127 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 184
>gi|198413013|ref|XP_002122562.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A/B,
partial [Ciona intestinalis]
Length = 277
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + LKEYFEQFG + +K + TGRS+GFGFI F+ S K + K
Sbjct: 43 MFVGGLSWDTDEFKLKEYFEQFGQVRDCIIKRELETGRSRGFGFILFADASSVQKVVDAK 102
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H + R D P+ K ++ SK+FVG L PD T+ ++ HFE +G V + P
Sbjct: 103 SHLLDGRNID---PKKAKALRKD---SKLFVGGLNPDTTQETIQAHFEKFGEVDSIERPV 156
Query: 224 ----KPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDN 272
R F F+TF D V +I ++ I ++ + PKK+ Q N
Sbjct: 157 DRNTGKHRGFCFITFCKDGVIHDIIDNNRYQTIDGRQCECKDGDPKKQNKGNQMN 211
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLIGQ 246
K+FVG L+ D E L+E+FE +G V D +I + R F F+ F S + ++
Sbjct: 42 KMFVGGLSWDTDEFKLKEYFEQFGQVRDCIIKRELETGRSRGFGFILFADASSVQKVVDA 101
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNR 273
++ D + + PKK R+D++
Sbjct: 102 KSHLLDGRNI----DPKKAKALRKDSK 124
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
+++ L V G+ T ++ +FE+FG ++ VD+NTG+ +GF FI F
Sbjct: 121 KDSKLFVGGLNPDTTQETIQAHFEKFGEVDSIERPVDRNTGKHRGFCFITFC 172
>gi|38328245|gb|AAH62235.1| Hnrpa1 protein [Rattus norvegicus]
Length = 313
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|119617171|gb|EAW96765.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_e [Homo
sapiens]
Length = 317
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|328724866|ref|XP_003248272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Acyrthosiphon pisum]
Length = 432
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA------L 159
L V G+ W L+ YF ++G + V + +GRS+GFGF+ F+ +
Sbjct: 15 LFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVLQNG 74
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+L I + C+ R + K + P KVF+G L ++TE+DLR F YG V++
Sbjct: 75 PHVLDGRTIDPKPCNPRTLQKPKRSSSYP---KVFLGGLPSNVTETDLRTFFSRYGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK--KKMNERQD 271
V+I K R F F++FE D + +H VN+ K+V + +A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDDDAVDRCVAEHFVNLSGKQVEIKKAEPRDSNKMNDVGA 191
Query: 272 NRNNFDRRN 280
N+ ++ N
Sbjct: 192 NQWGMNQNN 200
>gi|440900708|gb|ELR51786.1| hypothetical protein M91_06025, partial [Bos grunniens mutus]
Length = 315
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 5 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 64
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 65 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 123
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 124 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 181
>gi|75517570|gb|AAI03708.1| HNRPA1 protein [Homo sapiens]
Length = 267
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|327263824|ref|XP_003216717.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Anolis
carolinensis]
Length = 354
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +S+ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|14043070|ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens]
gi|397472158|ref|XP_003807623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Pan
paniscus]
gi|288558857|sp|P09651.5|ROA1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=hnRNP core protein A1
gi|119617168|gb|EAW96762.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|119617174|gb|EAW96768.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|380812310|gb|AFE78029.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Macaca
mulatta]
Length = 372
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|335347347|ref|NP_001229438.1| heterogeneous nuclear ribonucleoprotein A1 [Equus caballus]
gi|410964601|ref|XP_003988842.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Felis catus]
gi|426224339|ref|XP_004006329.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Ovis aries]
gi|74222222|dbj|BAE26919.1| unnamed protein product [Mus musculus]
gi|149031878|gb|EDL86790.1| rCG50547, isoform CRA_b [Rattus norvegicus]
gi|149031880|gb|EDL86792.1| rCG50547, isoform CRA_b [Rattus norvegicus]
Length = 373
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|85060507|ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus musculus]
gi|59808855|gb|AAH89340.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|62531241|gb|AAH92395.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|74144667|dbj|BAE27318.1| unnamed protein product [Mus musculus]
gi|74185136|dbj|BAE39169.1| unnamed protein product [Mus musculus]
gi|74219989|dbj|BAE40574.1| unnamed protein product [Mus musculus]
Length = 373
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|293336544|ref|NP_001168743.1| uncharacterized protein LOC100382538 [Zea mays]
gi|223972773|gb|ACN30574.1| unknown [Zea mays]
gi|413936749|gb|AFW71300.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
gi|413936750|gb|AFW71301.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
Length = 384
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 31/226 (13%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
G++ + + D+SG + V G+ W T+ ++FE++G + + + DK+T
Sbjct: 39 GDAGGEDVRGAGGDSSGKI-----FVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTK 93
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTP 200
+GFGF+ FS K + +H I R +V+ +P + P K+F+G L
Sbjct: 94 MPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMNTKDGPKTRKIFIGGLPA 153
Query: 201 DLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDK 253
LTE +L++HF YG V++ I R F FVTFE + + +I G+ ++ K
Sbjct: 154 SLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 213
Query: 254 KVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGY 299
+V + +A PKK + DN + N R GG GY
Sbjct: 214 QVEIKKAEPKKHGS---DN--------------IGNGRSSQGGGGY 242
>gi|195451832|ref|XP_002073095.1| GK13337 [Drosophila willistoni]
gi|194169180|gb|EDW84081.1| GK13337 [Drosophila willistoni]
Length = 353
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F +FG ++ NVK D TGRS+GF FI F++ E+ K + +
Sbjct: 68 LFVGGLSWETTEKELRDHFGKFGDIDSINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAE 127
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I + D P+ K K+FVG LT ++++ ++R +F +G +V+V +P
Sbjct: 128 EHVINGKKVD---PKKAKA-----RHGKIFVGGLTTEISDEEIRTYFSQFGTIVEVEMPF 179
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 180 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPK 224
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES-ALKAMLK 164
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + L
Sbjct: 15 LFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFSDPSNVGLVLQNG 74
Query: 165 KHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H++ R D + P + + KVF+G L ++TE+DLR F+ +G V++V+I
Sbjct: 75 PHQLDGRTIDPKPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSFFQRFGKVMEVVI 134
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
K R F F++FE + +G+H VN+ K+V + A P+
Sbjct: 135 MYDQEKKKSRGFGFLSFEDEDAVDRCVGEHFVNLNGKQVEIKRAEPR 181
>gi|291389294|ref|XP_002711081.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Oryctolagus
cuniculus]
Length = 371
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|426223452|ref|XP_004005889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKEEM 186
>gi|71895177|ref|NP_001026424.1| heterogeneous nuclear ribonucleoprotein A1 [Gallus gallus]
gi|53130302|emb|CAG31480.1| hypothetical protein RCJMB04_6o1 [Gallus gallus]
Length = 368
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +SS E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++F Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFGQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|260304980|ref|NP_001159443.1| predicted gene 5803 [Mus musculus]
gi|148676975|gb|EDL08922.1| mCG112810 [Mus musculus]
Length = 320
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFQTTDKSLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ ++ + + +S + G + K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGKVVEPKRAISRQDSQRPGA-HLIVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R+FAFVTF + DSV +I ++ N+ V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDTIVIQKYHNVNGHNCEVRKALSKQEM 186
>gi|395540858|ref|XP_003772367.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Sarcophilus
harrisii]
Length = 372
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES-ALKAMLK 164
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + L
Sbjct: 15 LFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFSDPSNVGLVLQNG 74
Query: 165 KHKIGNRICDVRI--PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
H++ R D + P + + KVF+G L ++TE+DLR F+ +G V++V+I
Sbjct: 75 PHQLDGRTIDPKPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSFFQRFGKVMEVVI 134
Query: 223 -----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
K R F F++FE + +G+H VN+ K+V + A P+
Sbjct: 135 MYDQEKKKSRGFGFLSFEDEDAVDRCVGEHFVNLNGKQVEIKRAEPR 181
>gi|8393547|ref|NP_058944.1| heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus]
gi|133255|sp|P04256.3|ROA1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; Short=HDP; AltName: Full=Single-strand
RNA-binding protein; AltName: Full=hnRNP core protein A1
gi|204580|gb|AAA41314.1| helix destabilizing protein [Rattus norvegicus]
Length = 320
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
>gi|195329216|ref|XP_002031307.1| GM25920 [Drosophila sechellia]
gi|194120250|gb|EDW42293.1| GM25920 [Drosophila sechellia]
Length = 345
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K + ++
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIEKVSAVE 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|302307303|ref|NP_983936.2| ADL160Wp [Ashbya gossypii ATCC 10895]
gi|299788936|gb|AAS51760.2| ADL160Wp [Ashbya gossypii ATCC 10895]
gi|374107149|gb|AEY96057.1| FADL160Wp [Ashbya gossypii FDAG1]
Length = 526
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T+++L+EYF ++G + + D TGRS+GFGF+ F+ S + + +
Sbjct: 165 MFIGGLNWETTEDNLREYFSKYGNVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKTQ 224
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + ++ D P+ E+ K+FVG + PD+ + E F +G+++D +++
Sbjct: 225 HILDGKVID---PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLD 281
Query: 224 KPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDN 272
K R F F+T++ D+V + + + K K++ + A P++ +R N
Sbjct: 282 KDTGRSRGFGFITYDSPDAVDRVCQNKFIEFKGKRIEIKRAEPRQVQKQRTTN 334
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSLIG 245
K+F+G L + TE +LRE+F YG V +V I + R F F++F + SV + +
Sbjct: 164 KMFIGGLNWETTEDNLREYFSKYGNVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKT 223
Query: 246 QHVNIKDKKVVVMEATPKKKM-NERQD 271
QH I D KV+ PK+ + E QD
Sbjct: 224 QH--ILDGKVI----DPKRAIPREEQD 244
>gi|391328905|ref|XP_003738923.1| PREDICTED: RNA-binding protein squid-like [Metaseiulus
occidentalis]
Length = 299
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N T ++ ++ L G+ + TD DL+ +FE++G ++ VK+D T +
Sbjct: 25 NGDGTDGSNGTTTSTADAEDRKLFCGGLSFDTTDADLRSHFEKYGEIQECTVKMDPMTKK 84
Query: 144 SKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
S+GFGFI F S ++ A+ H I + D P++ K P A KVF G L P+
Sbjct: 85 SRGFGFITFGSKQAVEDAIAGAPHTIKGKQID---PKAAKA---RPGAKKVFCGGLPPET 138
Query: 203 TESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256
TE ++R +F YG + + +P R F FVT+E + A + + + I K+
Sbjct: 139 TEEEIRTYFGQYGNIEALELPVDKEKNQRRGFIFVTYETTAAADAAVKKPKQTINGKECD 198
Query: 257 VMEATPK 263
V +ATPK
Sbjct: 199 VKKATPK 205
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES-ALKAMLK 164
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +L
Sbjct: 2 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVSLVLQNG 61
Query: 165 KHKIGNRI-----CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
H++ R C+ R + K P KVF+G L ++TE+DLR +F +G V++
Sbjct: 62 PHQLDGRTIDPKPCNPRTLQKPKRSGGFP---KVFLGGLPSNVTETDLRSYFTRFGKVME 118
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPKKKMNERQDNR 273
V+I K R F F++FE + + +H VN+ K+V + A KMN+ +
Sbjct: 119 VVIMYDQEKKKSRGFGFLSFEDEEAVDRCVAEHFVNLNGKQVEIKRAESSSKMNDSHQGQ 178
Query: 274 NNFDRRNDRSRSPMSNSRQYGGGNG 298
++ N GG NG
Sbjct: 179 WGPPQQGGPPMGMAGNMGPMGGPNG 203
>gi|318086954|gb|ADV40069.1| putative heterogeneous nuclear ribonucleoprotein isoform A
[Latrodectus hesperus]
Length = 293
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
+ V G+ W T L+EYF ++G + V + T RS+GFGF+ F K +
Sbjct: 18 IFVGGLSWETTQEKLQEYFSRYGEVVDCVVMKNSETNRSRGFGFVTFKDVACVAKVLSSG 77
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+ I ++C R + K + P KVF+G L P+ TE+DLR F YG VV+
Sbjct: 78 PHEVDGRTIDPKVCSSRDSQQNKKAGQYP---KVFLGGLPPNCTETDLRSFFSRYGTVVE 134
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPKKKMNERQ 270
V++ K R F F++FE + K + +H V I KK+ A P+ K Q
Sbjct: 135 VVLMYDQEKKKSRGFGFLSFETEDSVKQVCAEHFVKINGKKIECKHAEPRDKKRPSQ 191
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREF 229
++I S ++G E A K+FVG L+ + T+ L+E+F YG VVD ++ K R F
Sbjct: 1 MKIDVSEEVGQGEE-AGKIFVGGLSWETTQEKLQEYFSRYGEVVDCVVMKNSETNRSRGF 59
Query: 230 AFVTF-ELDSVAKSL 243
FVTF ++ VAK L
Sbjct: 60 GFVTFKDVACVAKVL 74
>gi|195036936|ref|XP_001989924.1| GH19060 [Drosophila grimshawi]
gi|193894120|gb|EDV92986.1| GH19060 [Drosophila grimshawi]
Length = 349
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ + + +
Sbjct: 61 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDQVSAAE 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 121 EHIINSKKVD---PKKAKA-----RHGKIFVGGLTTEISDEEIKTYFSQFGTIVEVEMPF 172
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 173 DKQKSHRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 217
>gi|15226106|ref|NP_180899.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2459445|gb|AAB80680.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|22530920|gb|AAM96964.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|23198416|gb|AAN15735.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330253737|gb|AEC08831.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 404
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 85/184 (46%), Gaps = 29/184 (15%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W +N L+EYF FG + V +K TGR +GFGF+ FS + + K
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA-------------------SKVFVGSLTPDLTESD 206
H I NR DV+ S + + P K+FVG L P LT +
Sbjct: 68 HHIDNRDVDVKRAMSRE--EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 207 LREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVME 259
R +FE YG V D +I +P R F FV+F+ DSV L ++ K+V V
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRP-RGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKR 184
Query: 260 ATPK 263
A PK
Sbjct: 185 ALPK 188
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+G S + R++ D+ V+ + V G+P T ++ + YFE +G + A + +D+ T
Sbjct: 89 AGRSGTFNASRNF-DSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTT 147
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
R +GFGF+ F S +S + K H + + +V+
Sbjct: 148 QRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T++ LKE+F +G + +V +KNTG+ +GFGF+ F+ + + K
Sbjct: 8 LFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDK 67
Query: 166 HKIGNRICDVR---------IPESTKIGTEEPV----------ASKVFVGSLTPDLTESD 206
H I R D + I +++ G K+FVG L P LTE
Sbjct: 68 HVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEK 127
Query: 207 LREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVME 259
R++FE YG V DV++ +P R F F++F+ D+V + L ++ K+V V
Sbjct: 128 FRQYFESYGNVTDVVVMYDQNTGRP-RGFGFISFDTEDAVDRVLHKSFHDLNGKQVEVKR 186
Query: 260 ATPK 263
A PK
Sbjct: 187 ALPK 190
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
N G ++ + V G+P T T+ ++YFE +G + V D+NTGR +GFGFI F + +
Sbjct: 105 NGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTED 164
Query: 157 SALKAMLKK-HKIGNRICDVR 176
+ + + K H + + +V+
Sbjct: 165 AVDRVLHKSFHDLNGKQVEVK 185
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIG 245
K+F+G ++ D TE L+EHF YG V+ + KP R F FV F ++ +
Sbjct: 7 KLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKP-RGFGFVVFADPNILDRV-- 63
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGN 297
++DK V+ KK R+D + + R S S M++ GGN
Sbjct: 64 ----LEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGN---GGN 108
>gi|363735855|ref|XP_003641619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Gallus gallus]
Length = 386
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 37 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 96
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 97 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 155
Query: 215 GAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + + + + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 156 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 214
>gi|326471297|gb|EGD95306.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton
tonsurans CBS 112818]
Length = 478
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 28/209 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LKEYF QFG + V D +GRS+GFGF+ F+ ++ K K+
Sbjct: 1 MFIGGLNWETTDQSLKEYFSQFGEVHECTVMRDGASGRSRGFGFLTFTDPKTLYKIDPKR 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
IP E+ SK+FVG ++ + TE + ++ F +G VVD +
Sbjct: 61 A----------IPRD-----EQERTSKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMID 105
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR- 278
+P R F FVTF+ ++ ++ + + I K + V +A P+ + + +++R R
Sbjct: 106 KDTGRP-RGFGFVTFDSEAAVEATLSVPLEIHGKAIEVKKAQPRGNLRDDEESRRLGKRG 164
Query: 279 -RNDRSRSPMSNSRQYGGGNGYYDNRQQQ 306
R+DR + R G +G N Q Q
Sbjct: 165 FRDDR----FKDDRGSGSDSGQQSNTQNQ 189
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
+ + V G+ T+ + K++F QFG + A + +DK+TGR +GFGF+ F S E+A++A L
Sbjct: 71 SKIFVGGVSQEATEQEFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDS-EAAVEATL 129
>gi|355564301|gb|EHH20801.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
mulatta]
Length = 372
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|357447957|ref|XP_003594254.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483302|gb|AES64505.1| RNA-binding protein, putative [Medicago truncatula]
Length = 522
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L++YF+ FG + A + D+ TGR++GFGF+ F+ A + +++K
Sbjct: 47 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 106
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPV---ASKVFVGSLTPDLTESDLREH 210
H I R + + +P S+ G+ P K+FVG L +TESD + +
Sbjct: 107 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 166
Query: 211 FEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
F+ +G + DV++ +P R F F+T++ ++V K L + K V V A PK
Sbjct: 167 FDQFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPK 225
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P++ + V G+ T T++D K YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 143 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 202
Query: 160 KAMLKK-HKIGNRICDVR 176
K + K H++ ++ +V+
Sbjct: 203 KVLHKTFHELNGKMVEVK 220
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F+ +G VV+ +I K R F FV F SVA+ ++ +
Sbjct: 46 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 105
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSR-----SPMSNSRQYGGG 296
I + V +A P+ D++N F R N S +P+ + + GG
Sbjct: 106 KHVIDGRTVEAKKAVPR-------DDQNVFTRSNSSSHGSPAPTPIRTKKIFVGG 153
>gi|358415649|ref|XP_003583166.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Bos taurus]
Length = 321
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ +++ S + ++ P A K+FVG + D E LR++FE Y
Sbjct: 70 VAMNARPHKVDGRVGELKRAVSRE-DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|356501604|ref|XP_003519614.1| PREDICTED: uncharacterized protein LOC100814628 [Glycine max]
Length = 477
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W D LKEYF ++G + A + D+ TGR++GFGF+ F+ +A + ++ K
Sbjct: 8 LFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKI-GTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P ++ I G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQTINRQTGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V + L + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + + V G+P T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 102 PGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 160 KAMLKK-HKIGNRICDVR--IPESTKIG-TEEPV 189
+ + K H++ ++ +V+ +P+ G T P+
Sbjct: 162 RVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPL 195
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D + L+E+F YG V++ +I + R F FV F S A+ +I
Sbjct: 7 KLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|403271005|ref|XP_003927441.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|1465873|dbj|BAA07211.1| Bmsqd-2 [Bombyx mori]
Length = 303
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W TD +L+++F + +E NVK NTGRS+GF FI F + ES K M
Sbjct: 45 LFVGGLSWETTDKELRDHFGAYREIESINVKTVPNTGRSRGFAFIVFKAPESIDKVMAAG 104
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I N+ D P+ K K+FVG L+ ++++ ++R F +G +++V +P
Sbjct: 105 EHTINNKKVD---PKKAKA-----RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 156
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K+V V ATPK
Sbjct: 157 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 201
>gi|90075098|dbj|BAE87229.1| unnamed protein product [Macaca fascicularis]
Length = 304
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|50286689|ref|XP_445774.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525080|emb|CAG58693.1| unnamed protein product [Candida glabrata]
Length = 452
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T++ L++YF ++G +E + D TGRS+GFGF+ F S S + + +
Sbjct: 124 MFIGGLNWETTEDGLRDYFSKYGKVEELKIMKDPATGRSRGFGFLTFESASSVDEVVKTQ 183
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + ++ D + IP E+ K+FVG + PD+ + E F +G ++D ++
Sbjct: 184 HILDGKVIDPKRAIPRE-----EQDKTGKIFVGGIGPDVRPKEFEEFFAQWGTIIDAQLM 238
Query: 222 IPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
+ K R F F+T++ D+V K + ++ K +K+ + A P+
Sbjct: 239 LDKDTGRSRGFGFITYDTPDAVDKVCQNKFIDFKGRKIEIKRAAPR 284
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFE-LDSVAKSL 243
+ K+F+G L + TE LR++F YG V ++ I K R F F+TFE SV + +
Sbjct: 121 SCKMFIGGLNWETTEDGLRDYFSKYGKVEELKIMKDPATGRSRGFGFLTFESASSVDEVV 180
Query: 244 IGQHVNIKDKKVV 256
QH I D KV+
Sbjct: 181 KTQH--ILDGKVI 191
>gi|449444504|ref|XP_004140014.1| PREDICTED: uncharacterized protein LOC101222391 [Cucumis sativus]
gi|449505107|ref|XP_004162378.1| PREDICTED: uncharacterized protein LOC101227668 [Cucumis sativus]
Length = 476
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ LKEYF +G + A + D+ TGR +GFGFI F+ A + + +K
Sbjct: 8 LFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVIREK 67
Query: 166 HKIGNRICDV-------------RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
H I R+ + R S + K+FVG L +TES+ + +F+
Sbjct: 68 HNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFKNYFD 127
Query: 213 YYGAVVDVLIP------KPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V K LI + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTLRP-RGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPKE 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T+++ K YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
K ++K H++ ++ +V+
Sbjct: 161 EKVLIKTFHELNGKMVEVK 179
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
+ K+FVG ++ D E L+E+F YG VV+ +I K R F F+ F SVA +I
Sbjct: 5 SGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVI 64
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
+ NI + V A P+ N
Sbjct: 65 REKHNIDGRMVEAKRAVPRNDQN 87
>gi|449447863|ref|XP_004141686.1| PREDICTED: uncharacterized protein LOC101220676 [Cucumis sativus]
gi|449525968|ref|XP_004169988.1| PREDICTED: uncharacterized LOC101220676 [Cucumis sativus]
Length = 700
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T++ ++YF ++G + + + +DK+TGR +GFGF+ F A +
Sbjct: 425 LFVGGVAWETTEDTFRDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIADMVLKID 484
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H I R +V+ +P + K+FVG + P LTE + +++F +G +++ ++
Sbjct: 485 HIIDGRAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEEEFKDYFSSFGRIIEHQIM 544
Query: 222 I---PKPFREFAFVTFE-LDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
I K R F F+TFE DSV G ++ + K+V + +A PK+
Sbjct: 545 IDYKTKRSRGFGFITFENEDSVENIFSGDRIHELGGKQVEIKKAVPKR 592
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSL 243
+ K+FVG + + TE R++F YG + D +I +P R F FVTF ++A +
Sbjct: 422 SGKLFVGGVAWETTEDTFRDYFSKYGEIADSVIMIDKHTGRP-RGFGFVTFCDPAIADMV 480
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+ I + V V P+ MN++ +R
Sbjct: 481 LKIDHIIDGRAVEVKRTVPRADMNDKMVSRT 511
>gi|297823133|ref|XP_002879449.1| hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp.
lyrata]
gi|297325288|gb|EFH55708.1| hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp.
lyrata]
Length = 403
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 85/184 (46%), Gaps = 29/184 (15%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W +N L+EYF FG + V +K TGR +GFGF+ FS + + K
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA-------------------SKVFVGSLTPDLTESD 206
H I NR DV+ S + + P K+FVG L P LT +
Sbjct: 68 HHIDNRDVDVKRAMSRE--EQSPAGRSGNFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 207 LREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVME 259
R +FE YG V D +I +P R F FV+F+ DSV L ++ K+V V
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRP-RGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKR 184
Query: 260 ATPK 263
A PK
Sbjct: 185 ALPK 188
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+G S + R++ D+ V+ + V G+P T ++ + YFE +G + A + +D+ T
Sbjct: 89 AGRSGNFNASRNF-DSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTT 147
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
R +GFGF+ F S +S + K H + + +V+
Sbjct: 148 QRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIG 245
K+F+G ++ D E+ LRE+F +G V+ V + +P R F FV F +V ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRP-RGFGFVAFSDPAVIDRVLQ 65
Query: 246 QHVNIKDKKVVVMEATPKKKMNE--RQDNRN---NFD 277
+I ++ V V A +++ + R N N NFD
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGNFNASRNFD 102
>gi|402908392|ref|XP_003916927.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Papio anubis]
Length = 343
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 2 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 61
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 62 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 120
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 121 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 178
>gi|402908388|ref|XP_003916925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Papio anubis]
gi|402908390|ref|XP_003916926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Papio anubis]
Length = 351
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|449506755|ref|XP_002199353.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Taeniopygia guttata]
Length = 385
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 36 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 95
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 96 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 154
Query: 215 GAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + + + + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 155 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 213
>gi|426224337|ref|XP_004006328.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Ovis aries]
Length = 310
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|112983696|ref|NP_001037323.1| squid protein homologue [Bombyx mori]
gi|784909|dbj|BAA07210.1| Bmsqd-1 [Bombyx mori]
Length = 287
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W TD +L+++F + +E NVK NTGRS+GF FI F + ES K M
Sbjct: 45 LFVGGLSWETTDKELRDHFGAYREIESINVKTVPNTGRSRGFAFIVFKAPESIDKVMAAG 104
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I N+ D P+ K K+FVG L+ ++++ ++R F +G +++V +P
Sbjct: 105 EHTINNKKVD---PKKAKA-----RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 156
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TFE + V L+ I K+V V ATPK
Sbjct: 157 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 201
>gi|291389618|ref|XP_002711396.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|291389616|ref|XP_002711395.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|153792009|ref|NP_001093319.1| heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori]
gi|95102934|gb|ABF51408.1| heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori]
Length = 316
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 16/245 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P L + G+ + TD+ LKE++EQ+G + V D T RSKGFGFI +S
Sbjct: 13 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 72
Query: 160 KAMLKK-HKIGNRICDVR--IP-ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
+A + HKI RI + + +P E K K+FV L D+ E DLRE+F +G
Sbjct: 73 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 132
Query: 216 AVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNER 269
+V V + R F FV F + D V + + Q+ IKD+ + V +A K M+
Sbjct: 133 NIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDMSGG 192
Query: 270 QDNRNNFDRRNDRSRSPMSNSR--QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
++R RR R+ SR Q+G +G ++ Q GY+ + + W G
Sbjct: 193 GNDRGGRGRRGGRAGGGGGWSRSDQWGNQDGSFNQGQ----GYSQGGNWGNQNPWDDNGG 248
Query: 328 GNSNN 332
GN +N
Sbjct: 249 GNWSN 253
>gi|403296845|ref|XP_003939304.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Saimiri
boliviensis boliviensis]
Length = 320
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGDIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|326922673|ref|XP_003207572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Meleagris gallopavo]
Length = 378
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 29 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 88
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 89 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 147
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 148 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 206
>gi|426341485|ref|XP_004036065.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Gorilla gorilla gorilla]
Length = 320
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+G L V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|109109574|ref|XP_001086021.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Macaca mulatta]
Length = 267
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 35/241 (14%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
A+ + HK+ R+ + V +S + G V K FVGS+ D E LR++F+ Y
Sbjct: 70 AAINARPHKVDGRVVEPKRAVSREDSQRPGAHFTV-KKTFVGSIKEDTEEHHLRDYFDQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 269 RQDNR--------------NNFDRRNDRSRS--PMS-------NSRQYGGGNGYYDNRQQ 305
++ N+F N++S + PM +S YGGG Y+ Q
Sbjct: 189 ASSSQRGRSGSGNFGGGSYNDFGNCNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQN 248
Query: 306 Q 306
Q
Sbjct: 249 Q 249
>gi|355766014|gb|EHH62484.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
fascicularis]
Length = 372
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|297804878|ref|XP_002870323.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
gi|297316159|gb|EFH46582.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 87/182 (47%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W ++ L+E+F +G + A V DK TGR +GFGF+ FS + + K
Sbjct: 8 LFVGGVSWETDEDKLREHFSNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQDK 67
Query: 166 HKIGNRICDVRIPES-----------------TKIGTEEPVASKVFVGSLTPDLTESDLR 208
H I R DV+ S + G K+FVG L P LT+ + R
Sbjct: 68 HNIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDSFNKTKKIFVGGLPPTLTDEEFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE YG V DV I +P R F FV+F+ D+V + L ++ K+V V A
Sbjct: 128 QYFEVYGPVTDVAIMYDQATNRP-RGFGFVSFDSEDAVDRVLHKTFHDLSGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVV------DVLIPKPFREFAFVTFELDSVAKSLIG 245
K+FVG ++ + E LREHF YG V D L +P R F FV F SV ++
Sbjct: 7 KLFVGGVSWETDEDKLREHFSNYGEVSQAIVMRDKLTGRP-RGFGFVIFSDPSVLDRVLQ 65
Query: 246 QHVNIKDKKVVVMEATPKKK 265
NI ++V V A +++
Sbjct: 66 DKHNIDTREVDVKRAMSREE 85
>gi|89257506|gb|ABD64996.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 587
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 25/200 (12%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W T++ L+EYF+ FG + A + D+ TGR++GFGF+ FS A +
Sbjct: 3 MESCKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFSDPIVAER 62
Query: 161 AMLKKHKIGNRICDVR--IPESTKI-----------GTEEPVAS-KVFVGSLTPDLTESD 206
+ +H I ++ + + +P + G+ P S K+FVG L +TE++
Sbjct: 63 VVFLRHVIDGKLVEAKKAVPRDDHVVLNKSYNTSLQGSPGPANSKKIFVGGLASSVTEAE 122
Query: 207 LREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVME 259
+++F +G + DV++ +P R F F++FE D+V K L + K V V
Sbjct: 123 FKKYFAQFGVITDVVVMYDHRTQRP-RGFGFISFESEDAVDKVLQRTFHELNGKMVEVKL 181
Query: 260 ATPKK-KMN--ERQDNRNNF 276
A PK+ +N Q N N+F
Sbjct: 182 AVPKEMALNPIRNQMNVNSF 201
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ + T+ + K+YF QFG + V D T R +GFGFI F S ++
Sbjct: 102 GPANSKKIFVGGLASSVTEAEFKKYFAQFGVITDVVVMYDHRTQRPRGFGFISFESEDAV 161
Query: 159 LKAMLKK-HKIGNRICDVRI 177
K + + H++ ++ +V++
Sbjct: 162 DKVLQRTFHELNGKMVEVKL 181
>gi|433286562|pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 11 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 70
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 71 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 129
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 130 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 187
>gi|147791134|emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W +++ LKEYF +G + A V DK TGR +GFGF+ F+ + + +K
Sbjct: 8 LFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEK 67
Query: 166 HKIGNRICDVRIP-------ESTKIGTEEPV----------ASKVFVGSLTPDLTESDLR 208
H I R + + S++ G K+FVG L P L+E R
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE +G V DV++ +P R F FV+F+ D+V + L ++ K+V V A
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRP-RGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
G V+ + V G+P T ++ ++YFE FG + V D++T R +GFGF+ F + ++
Sbjct: 105 GNVKTKKIFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAV 164
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H + + +V+
Sbjct: 165 DRVLYKTFHDLNGKQVEVK 183
>gi|109131409|ref|XP_001082949.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Macaca mulatta]
gi|297304279|ref|XP_001082690.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Macaca mulatta]
Length = 320
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHNCEVRKALSKQEM 186
>gi|395835057|ref|XP_003790500.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Otolemur
garnettii]
Length = 373
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GT V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTXXXXXVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|294887413|ref|XP_002772097.1| Heterogeneous nuclear ribonucleoprotein A/B, putative [Perkinsus
marinus ATCC 50983]
gi|239876035|gb|EER03913.1| Heterogeneous nuclear ribonucleoprotein A/B, putative [Perkinsus
marinus ATCC 50983]
Length = 341
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGT-LEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
V+ + V G+P ++DL+EYF FG + +K+DK TGRS+GFGF+ + +S
Sbjct: 69 VRKLKVFVGGLPQGLQESDLREYFNNFGDDVVEVEIKMDKVTGRSRGFGFVTLMNGDST- 127
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
+ KH+I N+ DV +E +K+FVG L P E + ++F YGA+V+
Sbjct: 128 RLFNNKHRIKNKDIDV----------DEVTETKIFVGGLNPATGEQAVVDYFSKYGAIVN 177
Query: 220 VLIPKPF----REFAFVTFE-LDSVAKSL--IGQHVNIKDKKVVVMEATPKKKM-NERQD 271
+ + R FAFV FE ++V ++L I+D+ V V A P+KK+ N +
Sbjct: 178 CELAFDYAGMSRGFAFVIFEDAEAVHRTLDACPSGHTIEDRMVDVRRAEPRKKLPNGQSL 237
Query: 272 NRNNFDRRNDRSRSPMSNS 290
++N F + R P+ N
Sbjct: 238 SQNMFGVPDLRQGGPIRNG 256
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 172 ICDVRIPESTKIGTEEPVASK--VFVGSLTPDLTESDLREHFEYYG-AVVDVLIPKP--- 225
+C ++P++ + + P+ K VFVG L L ESDLRE+F +G VV+V I
Sbjct: 51 VCHDQVPKTPRPAYKNPIVRKLKVFVGGLPQGLQESDLREYFNNFGDDVVEVEIKMDKVT 110
Query: 226 --FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F FVT ++ + L IK+K + V E T K
Sbjct: 111 GRSRGFGFVTL-MNGDSTRLFNNKHRIKNKDIDVDEVTETK 150
>gi|449299976|gb|EMC95989.1| hypothetical protein BAUCODRAFT_511421 [Baudoinia compniacensis
UAMH 10762]
Length = 454
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK YF QFG + V D TGRS+GFGF+ F + M+K+
Sbjct: 1 MFIGGLNWETTDESLKNYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKVVNTVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + ++ D P+ E+ +K+FVG ++ + ++ D F +G V+D +
Sbjct: 61 HTLDGKLID---PKRAIPRDEQERTAKIFVGGVSQEASQDDFANFFRRFGNVLDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
+P R F FVTF+ ++ + + I K + V A P+ M E
Sbjct: 118 KETGRP-RGFGFVTFDSEAAVDRTLESPLAICGKNIEVKRAQPRGDMRE 165
>gi|395519835|ref|XP_003764047.1| PREDICTED: uncharacterized protein LOC100918877 [Sarcophilus
harrisii]
Length = 495
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 141 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 200
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 201 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 259
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 260 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 319
Query: 265 KMN 267
+M
Sbjct: 320 EMQ 322
>gi|291389275|ref|XP_002711073.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|39654464|pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 69 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 127
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 128 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 185
>gi|356551592|ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
Length = 479
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + L+EYF +G + A + D+ TGR++GFGF+ FS A +
Sbjct: 5 NGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVI 64
Query: 163 LKKHKIGNRICDVR--IPE---------STKI-GTEEPVAS-KVFVGSLTPDLTESDLRE 209
+KH I R+ + + +P S I G+ P + K+FVG L +TESD ++
Sbjct: 65 KEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+T++ ++V K L+ + K V V A P
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
Query: 263 KK 264
K+
Sbjct: 184 KE 185
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
K +LK H++ ++ +V+
Sbjct: 161 DKVLLKTFHELNGKMVEVK 179
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LRE+F YG VV+ +I K R F FV F ++A+ +I +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVIKE 66
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
NI + V +A P+ N
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQN 87
>gi|291384352|ref|XP_002708768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+G L V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFEMTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVR---IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + HK+ R+ + + + E ++ K+FVG + D E LR++FE YG
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVLREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 216 A--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|109109572|ref|XP_001086138.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Macaca mulatta]
Length = 320
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
A+ + HK+ R+ + V +S + G V K FVGS+ D E LR++F+ Y
Sbjct: 70 AAINARPHKVDGRVVEPKRAVSREDSQRPGAHFTV-KKTFVGSIKEDTEEHHLRDYFDQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|225433229|ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W +++ LKEYF +G + A V DK TGR +GFGF+ F+ + + +K
Sbjct: 8 LFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEK 67
Query: 166 HKIGNRICDVRIP-------ESTKIGTEEPV----------ASKVFVGSLTPDLTESDLR 208
H I R + + S++ G K+FVG L P L+E R
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEAT 261
++FE +G V DV++ +P R F FV+F+ D+V + L ++ K+V V A
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRP-RGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
G V+ + V G+P T ++ ++YFE FG + V D++T R +GFGF+ F + ++
Sbjct: 104 GGNVKTKKIFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDA 163
Query: 158 ALKAMLKK-HKIGNRICDVR 176
+ + K H + + +V+
Sbjct: 164 VDRVLYKTFHDLNGKQVEVK 183
>gi|20664272|pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
gi|55670114|pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
gi|55670116|pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
gi|55670118|pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
gi|55670120|pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
gi|55670122|pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
gi|55670124|pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
gi|55670126|pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
gi|55670128|pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|291394515|ref|XP_002713754.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 274
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|194901408|ref|XP_001980244.1| GG17035 [Drosophila erecta]
gi|190651947|gb|EDV49202.1| GG17035 [Drosophila erecta]
Length = 345
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 20/194 (10%)
Query: 82 SGNSSATQSKRSYPDN-SGPVQNTD----LVVLGIPWTFTDNDLKEYFEQFGTLEFANVK 136
+G++ A S DN SG D L V G+ W T+ +L+++F ++G +E NVK
Sbjct: 29 NGDAGAAGSTNGSSDNQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVK 88
Query: 137 VDKNTGRSKGFGFIRFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFV 195
D TGRS+GF FI F++ E+ K + +H I ++ D P+ K K+FV
Sbjct: 89 TDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVD---PKKAK-----ARHGKIFV 140
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLIP----KPFRE-FAFVTFELDSVAKSLIGQ-HVN 249
G LT ++++ +++ +F +G +V+V +P K R+ F F+TF+ + V L+
Sbjct: 141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK 200
Query: 250 IKDKKVVVMEATPK 263
I K+V V ATPK
Sbjct: 201 IAGKEVDVKRATPK 214
>gi|15292697|gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 494
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IP------------ESTKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S + P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPSGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +FE +G DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
PK + SRSP+ YG
Sbjct: 184 VPK-------------ELSPGPSRSPLGAGYSYG 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N S + S + P SGP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 90 NRSNSSSIQGSP--SGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S E+ K +LK H++ ++ +V+
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>gi|398396946|ref|XP_003851931.1| hypothetical protein MYCGRDRAFT_28846, partial [Zymoseptoria
tritici IPO323]
gi|339471811|gb|EGP86907.1| hypothetical protein MYCGRDRAFT_28846 [Zymoseptoria tritici IPO323]
Length = 161
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG + V D +GRS+GFGF+ F ++ M+K+
Sbjct: 2 MFIGGLNWETTDQSLKDYFSQFGEVVECTVMRDGQSGRSRGFGFLTFKDPKTVNTVMVKE 61
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + ++ D P+ E+ +K+FVG ++ + TE D +E F +G V+D +
Sbjct: 62 HSLDGKLID---PKRAIPRDEQERTAKIFVGGVSQEATEQDFKEFFMQFGRVLDATLMMD 118
Query: 223 ---PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+P R F FVTF+ + + + + I K + V A P+
Sbjct: 119 KDTGRP-RGFGFVTFDDEKAVERTLEGPLAILGKGIEVKRAQPR 161
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + V G+ T+ D KE+F QFG + A + +DK+TGR +GFGF+
Sbjct: 72 KRAIPRDEQE-RTAKIFVGGVSQEATEQDFKEFFMQFGRVLDATLMMDKDTGRPRGFGFV 130
Query: 151 RFSSHESALKAM 162
F ++ + +
Sbjct: 131 TFDDEKAVERTL 142
>gi|114577985|ref|XP_001144332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
Length = 320
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFFGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|58332392|ref|NP_001011015.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
gi|82234092|sp|Q640A2.1|HNRDL_XENTR RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|52139122|gb|AAH82729.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
gi|89268223|emb|CAJ82429.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
Length = 297
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + K
Sbjct: 28 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETK 87
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+P+ TE ++++F +G + ++ +P
Sbjct: 88 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPM 144
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
R F FVT+ + K L+ + I K + A PK+
Sbjct: 145 DTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKE 190
>gi|209155336|gb|ACI33900.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 348
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 11/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D+ TGRS+GFGFI F K + K
Sbjct: 86 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAAGVDKVLEQK 145
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R D P+ +EPV K+FVG L PD + ++E+F +G + + +P+
Sbjct: 146 EHRLDGRQID---PKKAMAMKKEPV-KKIFVGGLNPDTEKEVIQEYFGTFGEIETIELPQ 201
Query: 225 -----PFREFAFVTFELDS-VAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T++ ++ V K L + N+ K + A PK+
Sbjct: 202 DPKTEKRRGFVFITYKDETPVKKVLEKKFHNVSGSKCEIKIAQPKE 247
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G V D I R F F+ F+ + ++
Sbjct: 83 AGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAAGVDKVL 142
Query: 245 GQHVN------IKDKKVVVMEATPKKKM 266
Q + I KK + M+ P KK+
Sbjct: 143 EQKEHRLDGRQIDPKKAMAMKKEPVKKI 170
>gi|426254471|ref|XP_004020902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFGF+ +++ E +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVV 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVPLVLQNG 74
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K P KVF+G L ++TE+DLR F YG V++
Sbjct: 75 PHQLDGRTIDPKPCNPRTQQKPKRSGGFP---KVFLGGLPSNVTETDLRTFFNRYGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK---KKMNERQ 270
V+I K R F F++FE + + +H VN+ K+V + A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKRAEPRDSSSKMNDSH 191
Query: 271 DNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ ++ N GG NG
Sbjct: 192 QGQWGPPQQGGPPMGMAGNMGPMGGPNG 219
>gi|90076284|dbj|BAE87822.1| unnamed protein product [Macaca fascicularis]
Length = 231
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D P+ K + KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLID---PKRAKALKGKGPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>gi|355565001|gb|EHH21490.1| hypothetical protein EGK_04572, partial [Macaca mulatta]
Length = 357
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAISKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|198435807|ref|XP_002121392.1| PREDICTED: similar to CiMsi [Ciona intestinalis]
Length = 392
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES---ALKAM 162
+ V G+ T K+YFE FG + + DK TG S+GFGFI F++ S LKA
Sbjct: 12 IFVGGLSRQTTSEGFKQYFEGFGEVTDCVLMKDKETGVSRGFGFITFANPSSVNEVLKA- 70
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEPVAS--------KVFVGSLTPDLTESDLREHFEYY 214
+ H + N+ D + P + K ++ A+ K+F+G ++ + T+ D++ +FE Y
Sbjct: 71 -RPHTLDNKGIDPK-PCTPKAVLQQKKATANSFTKSHKIFIGGISMEATQEDVKGYFERY 128
Query: 215 GAVVDVLI-------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
G V +V+ KP + F FVTFE +S I +H + IKDK++ +A +++M
Sbjct: 129 GTVAEVVFVLNKEDPSKPHKGFGFVTFEDESSVDQAIAKHYHTIKDKRIEAKKAESRERM 188
Query: 267 N 267
+
Sbjct: 189 D 189
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSL 243
A K+FVG L+ T +++FE +G V D ++ K R F F+TF SV + L
Sbjct: 9 AGKIFVGGLSRQTTSEGFKQYFEGFGEVTDCVLMKDKETGVSRGFGFITFANPSSVNEVL 68
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
+ + +K + TPK + +++ N+F +
Sbjct: 69 KARPHTLDNKGIDPKPCTPKAVLQQKKATANSFTK 103
>gi|289739923|gb|ADD18709.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 295
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA-MLK 164
L V G+ W ++ +L+E+F +FG +E NVK D TGRS+GF FI F+ + K
Sbjct: 51 LFVGGLSWETSEKELREHFSKFGEIESINVKTDSQTGRSRGFAFIVFTGPTAIEKVNEHG 110
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I N+ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 111 EHVINNKKVD---PKKAKA-----RHGKIFVGGLTNEISDDEIKTYFGQFGNIVEVEMPF 162
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 163 DKQKSQRKAFCFITFDSEQVVSELLKTPKQKISGKEVDVKRATPK 207
>gi|385455|gb|AAB26989.1| SqdB [Drosophila melanogaster]
Length = 308
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPL 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|357146558|ref|XP_003574035.1| PREDICTED: uncharacterized protein LOC100832671 [Brachypodium
distachyon]
Length = 449
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 56/230 (24%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T+ L E+F FG + A V DK TGR +GFGF+ ++ + A+L+
Sbjct: 8 LFIGGISWETTEEKLHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAALLEP 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVAS--------------------------KVFVGSLT 199
H + R DV+ + EE AS K+FVG L
Sbjct: 68 HTLDGRTVDVK----RALSREEQQASKAVNPSTGRNTGGGGGGNDASGTRTKKIFVGGLP 123
Query: 200 PDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKD 252
LT+ + R++F+ +GAV DV++ +P R F F+TF+ D+V + L ++
Sbjct: 124 SSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRP-RGFGFITFDSEDAVDRVLHKTFHDLGG 182
Query: 253 KKVVVMEATPKK------------------KMNERQDNRNNFDRRNDRSR 284
K V V A P++ N N ++D R D SR
Sbjct: 183 KMVEVKRALPREANPGSGGGGRSMGGGGFHSNNGPNSNAGSYDGRADASR 232
>gi|89257474|gb|ABD64965.1| hypothetical protein 25.t00002 [Brassica oleracea]
Length = 445
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W T++ L++YF+ FG + A + D++TGR++GFGF+ F+ A +
Sbjct: 3 MESGKLFIGGISWETTEDRLRDYFQSFGEVLEAVIMKDRSTGRARGFGFLVFADPNVAER 62
Query: 161 AMLKKHKIGNRICDVR--IP-------ESTKIGTEEPVAS-KVFVGSLTPDLTESDLREH 210
+L +H I ++ + + +P S + + P S K+FVG L +TE++ +++
Sbjct: 63 VVLLRHVIDGKLVEAKKAVPRDDHKSNSSLQGSSPGPANSKKIFVGGLASSVTEAEFKKY 122
Query: 211 FEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
F +G + DV++ +P R F F+++E D+V + L + K V V A PK
Sbjct: 123 FAQFGTITDVVVMYDQRTQRP-RGFGFISYESEDAVDRVLRRTFHELNGKMVEVKLAVPK 181
Query: 264 KKMNERQDNRNNF 276
+ Q N N F
Sbjct: 182 DPV-RNQMNVNGF 193
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ + T+ + K+YF QFGT+ V D+ T R +GFGFI + S E A
Sbjct: 98 GPANSKKIFVGGLASSVTEAEFKKYFAQFGTITDVVVMYDQRTQRPRGFGFISYES-EDA 156
Query: 159 LKAMLKK--HKIGNRICDVRI 177
+ +L++ H++ ++ +V++
Sbjct: 157 VDRVLRRTFHELNGKMVEVKL 177
>gi|449266230|gb|EMC77309.1| Heterogeneous nuclear ribonucleoprotein A3 like protein 2, partial
[Columba livia]
Length = 356
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 7 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 66
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 67 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 125
Query: 215 GAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + + + + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 126 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 184
>gi|195571113|ref|XP_002103548.1| GD20486 [Drosophila simulans]
gi|194199475|gb|EDX13051.1| GD20486 [Drosophila simulans]
Length = 345
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 97/165 (58%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K + ++
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIEKVSAVE 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D +P++ + K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD--LPKA------KARHGKIFVGFLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|291410919|ref|XP_002721735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRRLFIGGLSFETTNESLRSHFEQWGTLTDCMVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|24646605|ref|NP_652209.1| squid, isoform C [Drosophila melanogaster]
gi|386765705|ref|NP_001247088.1| squid, isoform E [Drosophila melanogaster]
gi|23171183|gb|AAN13570.1| squid, isoform C [Drosophila melanogaster]
gi|73853364|gb|AAZ86753.1| LD29474p [Drosophila melanogaster]
gi|220951946|gb|ACL88516.1| sqd-PC [synthetic construct]
gi|383292688|gb|AFH06406.1| squid, isoform E [Drosophila melanogaster]
Length = 308
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|47939618|gb|AAH71945.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE +
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQF 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|6648193|gb|AAF21191.1|AC013483_15 putative RNA-binding protein [Arabidopsis thaliana]
Length = 492
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IP------------ESTKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S + P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +FE +G DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
PK + SRSP+ YG
Sbjct: 184 VPK-------------ELSPGPSRSPLGAGYSYG 204
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N S + S + P GP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 90 NRSNSSSIQGSP--GGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S E+ K +LK H++ ++ +V+
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>gi|440905636|gb|ELR55990.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Bos grunniens
mutus]
Length = 180
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 2 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEGD 61
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 62 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 120
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 121 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 178
>gi|351706129|gb|EHB09048.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 313
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|297744195|emb|CBI37165.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V GIPW T+ LKEYF Q+G + + DK TGR +GFGF+ F+ S L A+L+
Sbjct: 8 LFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFAD-PSVLDAVLQE 66
Query: 165 KHKIGNRICDV-RIPESTKIGTEEPVAS----------------KVFVGSLTPDLTESDL 207
KH I R + R + T P S K+FVG L LTE
Sbjct: 67 KHTIDGRTVEAKRALSREEQHTSRPGNSNTGRSSSGMGGNFKTKKIFVGGLPSTLTEEGF 126
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
R++FE YG V DV++ +P R F F++F+ D+V + L ++ K V V A
Sbjct: 127 RQYFETYGHVTDVVVMYDQNTQRP-RGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVKRA 185
Query: 261 TPK 263
PK
Sbjct: 186 LPK 188
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
GNS+ + RS G + + V G+P T T+ ++YFE +G + V D+NT
Sbjct: 92 GNSN---TGRSSSGMGGNFKTKKIFVGGLPSTLTEEGFRQYFETYGHVTDVVVMYDQNTQ 148
Query: 143 RSKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
R +GFGFI F + ++ + + K H + ++ +V+
Sbjct: 149 RPRGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVK 183
>gi|354472305|ref|XP_003498380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Cricetulus griseus]
Length = 423
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 77 CTFDASGNSS--ATQSKRSYP--DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF 132
C SG S + R P D P Q L + G+ + TD+ L+E+FE++GTL
Sbjct: 48 CCLRVSGPSGLLGDGNPRRSPGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTD 107
Query: 133 ANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEE 187
V D T RS+GFGF+ +S E AM + HK+ R+ + V +S K G
Sbjct: 108 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 167
Query: 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAK 241
V K+FVG + D E +LR++FE YG + + + + R FAFVTF + D+V K
Sbjct: 168 TV-KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 226
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKMN 267
++ ++ I V +A K++M
Sbjct: 227 IVVQKYHTINGHNCEVKKALSKQEMQ 252
>gi|307136289|gb|ADN34116.1| heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp.
melo]
Length = 699
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T++ +YF ++G + + + +DK+TGR +GFGF+ F A +
Sbjct: 423 LFVGGVAWETTEDTFSDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIADMVLKID 482
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H I R +V+ +P + K+FVG + P LTE + +++F +G +++ ++
Sbjct: 483 HIIDGRAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEVEFKDYFSSFGRIIEHQIM 542
Query: 222 I---PKPFREFAFVTFE-LDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
I K R F F+TFE DSV G ++ + K+V + +A PKK
Sbjct: 543 IDYKTKRSRGFGFITFENEDSVDNIFSGDRIHELGGKQVEIKKAVPKK 590
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSL 243
+ K+FVG + + TE ++F YG + D +I +P R F FVTF ++A +
Sbjct: 420 SGKLFVGGVAWETTEDTFSDYFSKYGEIADSVIMIDKHTGRP-RGFGFVTFCDPAIADMV 478
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+ I + V V P+ MN++ +R
Sbjct: 479 LKIDHIIDGRAVEVKRTVPRADMNDKMVSRT 509
>gi|426341487|ref|XP_004036066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Gorilla gorilla gorilla]
Length = 320
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+G L V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DS+ K +I ++ +K V +A K++M
Sbjct: 129 GKIEVIEIMTDRDSGKKRGFAFVTFDDHDSLDKIVIQKYHTVKGHNCEVRKALSKQEM 186
>gi|307173016|gb|EFN64158.1| RNA-binding protein squid [Camponotus floridanus]
Length = 288
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ + TD +L E+F +FG +E +VKVD +TG S+GF F+ F++ ++ K +
Sbjct: 56 LFVGGLSRSTTDKELHEHFSKFGEIESISVKVDPHTGVSRGFAFMVFANPKTIDKLLASG 115
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I R D K +++P KVFVG LTP++T+ D++ HF YG +V++ P
Sbjct: 116 EHYINKRKVD------PKRVSKKPQHGKVFVGGLTPEITDEDIKTHFGQYGTIVELQAPF 169
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
+ F F+TF+ V L+
Sbjct: 170 DKVKNQRKGFCFITFDSKEVVYKLL 194
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q+ + V G+ TD D+K +F Q+GT+ DK + KGF FI F S E K
Sbjct: 134 QHGKVFVGGLTPEITDEDIKTHFGQYGTIVELQAPFDKVKNQRKGFCFITFDSKEVVYKL 193
Query: 162 M 162
+
Sbjct: 194 L 194
>gi|30680456|ref|NP_850539.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332641086|gb|AEE74607.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IP------------ESTKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S + P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +FE +G DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
PK + SRSP+ YG
Sbjct: 184 VPK-------------ELSPGPSRSPLGAGYSYG 204
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
NSS+ Q GP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 93 NSSSIQGSPG-----GPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S E+ K +LK H++ ++ +V+
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>gi|391339574|ref|XP_003744123.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Metaseiulus occidentalis]
Length = 334
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 28/245 (11%)
Query: 93 SYPDNSG---PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S P N G P L + G+ + + LKEY+ ++G + V D + RS+GFGF
Sbjct: 9 STPSNGGSSEPEYMRKLFIGGLDYKTNEVTLKEYYSKWGEIMDCVVMTDPYSKRSRGFGF 68
Query: 150 IRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESD 206
+ ++ + +AM ++ H I NR + + IP G K+FVG L+ + D
Sbjct: 69 VTYADSQMVDQAMAQRPHIIDNRTVEPKRAIPREQSSGDTNMSVKKLFVGGLSTETEAED 128
Query: 207 LREHFEYYGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEA 260
LR +F YG++ +V+I R F FVTF + DSV K ++ +H IK K+ V +A
Sbjct: 129 LRNYFGKYGSIEEVIIATERDTGRKRGFGFVTFDDYDSVDKVVLQRHHMIKGKRTEVKKA 188
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQ---QQGGYNNKRRRN 317
K +M + +R D P NS G + +Y +GGY++ R
Sbjct: 189 LSKIEMEKA--------KRKDSFMGPPHNS----GPSHHYRGPPAPPPHRGGYSS-RGYG 235
Query: 318 DYDDW 322
D DDW
Sbjct: 236 DSDDW 240
>gi|18398061|ref|NP_566321.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930693|gb|AAL32012.1|AF436830_1 AT3g07810/F17A17_15 [Arabidopsis thaliana]
gi|23297627|gb|AAN12995.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332641085|gb|AEE74606.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 494
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IP------------ESTKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S + P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +FE +G DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
PK + SRSP+ YG
Sbjct: 184 VPK-------------ELSPGPSRSPLGAGYSYG 204
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N S + S + P GP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 90 NRSNSSSIQGSP--GGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S E+ K +LK H++ ++ +V+
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>gi|395837290|ref|XP_003791571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Otolemur
garnettii]
Length = 347
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|403283527|ref|XP_003933170.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 299
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGFIR+++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFIRYATAEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+F+G + D E LR++FE Y
Sbjct: 70 AAMNARPHKVHGRVVEPKRAVSREDSQRPGAHLTV-KKIFLGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFV F + DSV +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIITDRGSGKKRGFAFVAFDDHDSVDMIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|1711240|dbj|BAA13161.1| TIS [Mus musculus]
gi|119617170|gb|EAW96764.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_d [Homo
sapiens]
Length = 268
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|189241702|ref|XP_966757.2| PREDICTED: similar to hrp48.1 [Tribolium castaneum]
Length = 400
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM- 162
T L V G+ W T ++L+ +F ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 TKLFVGGLSWETTQDNLQRFFSRYGEVIDCVVMKNAESGRSRGFGFVTFSDPANVNTVLQ 74
Query: 163 -----LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
L I + C+ R + K G P KVF+G L ++TE+DLR F +G V
Sbjct: 75 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYP---KVFLGGLPSNVTETDLRTFFTRFGKV 131
Query: 218 VDVLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK 263
++V+I K R F F++FE + + +H VN+ K+V + +A P+
Sbjct: 132 MEVVIMYDQEKKKSRGFGFLSFEDEESVDRCVSEHFVNLNGKQVEIKKAEPR 183
>gi|297829340|ref|XP_002882552.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
gi|297328392|gb|EFH58811.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IP------------ESTKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S + P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+ +FE +G DV++ +P R F F+T++ ++V K L+ + K V V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 261 TPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
PK + SRSP+ YG
Sbjct: 184 VPK-------------ELSPGPSRSPLGAGYSYG 204
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N S + S + P GP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 90 NRSNSSSIQGSP--GGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GFGFI + S E+ K +LK H++ ++ +V+
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>gi|5542530|pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
gi|39654500|pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 121
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 122 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 179
>gi|195144350|ref|XP_002013159.1| GL23974 [Drosophila persimilis]
gi|194102102|gb|EDW24145.1| GL23974 [Drosophila persimilis]
Length = 341
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F +FG +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 57 LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAG 116
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 117 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIQTYFSQFGNIVEVEMPF 168
Query: 224 ---KPFR-EFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
K R +F F+T + + V L+ + I K+V V ATPK
Sbjct: 169 DKQKSQRTDFCFITLDSEQVVTDLLKTSIQKISVKEVDVKRATPK 213
>gi|356501721|ref|XP_003519672.1| PREDICTED: uncharacterized protein LOC100799330 [Glycine max]
Length = 475
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + L+EYF +G + A + D+ TGR++GFGF+ FS A +
Sbjct: 5 NGKLFIGGISWDTNEERLREYFCTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IPE---------STKI-GTEEPVAS-KVFVGSLTPDLTESDLRE 209
+KH I R+ + + +P S I G+ P + K+FVG L +TESD ++
Sbjct: 65 KEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+T++ ++V K L+ + K V V A P
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
Query: 263 KK 264
K+
Sbjct: 184 KE 185
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
K +LK H++ ++ +V+
Sbjct: 161 DKVLLKTFHELNGKMVEVK 179
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LRE+F YG VV+ +I K R F FV F +VA+ +I +
Sbjct: 7 KLFIGGISWDTNEERLREYFCTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKE 66
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
NI + V +A P+ N
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQN 87
>gi|297790889|ref|XP_002863329.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309164|gb|EFH39588.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 431
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W +++ L+EYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 3 MESCKLFIGGISWETSEDRLREYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPIVAER 62
Query: 161 AMLKKHKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+L KH I +I + + +P S+ G+ P + K+FVG L +TE++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHAVFNKSNSSLQGSPGPSTTKKIFVGGLASSVTEAEF 122
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+++F +G + DV++ +P R F F++++ D+V K L + K V V A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEDAVDKVLQKTFHELNGKMVEVKLA 181
Query: 261 TPKKKMNERQDNRNNFD 277
PK+ N+ N +
Sbjct: 182 VPKEMALNTMRNQMNVN 198
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
+S S + GP + V G+ + T+ + K+YF QFG + V D T R +GFG
Sbjct: 91 KSNSSLQGSPGPSTTKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 149 FIRFSSHESALKAMLKK-HKIGNRICDVRI 177
FI + S ++ K + K H++ ++ +V++
Sbjct: 151 FISYDSEDAVDKVLQKTFHELNGKMVEVKL 180
>gi|74004700|ref|XP_862045.1| PREDICTED: uncharacterized protein LOC608074 isoform 11 [Canis
lupus familiaris]
gi|410968906|ref|XP_003990940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Felis catus]
Length = 356
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|157277969|ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus musculus]
gi|162329579|ref|NP_001104765.1| heterogeneous nuclear ribonucleoprotein A3 isoform b [Rattus
norvegicus]
gi|335303045|ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa]
gi|25991929|gb|AAN76992.1|AF463524_1 ribonucleoprotein heterogeneous nuclear ribonucleoprotein A3 [Mus
musculus]
gi|23274114|gb|AAH23828.1| Hnrpa3 protein [Mus musculus]
gi|34327779|gb|AAQ63631.1| heterogeneous nuclear ribonucleoprotein A3 variant b [Rattus
norvegicus]
gi|111599310|gb|AAI16251.1| Hnrpa3 protein [Mus musculus]
gi|111599547|gb|AAI16252.1| Hnrpa3 protein [Mus musculus]
gi|148695243|gb|EDL27190.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148695244|gb|EDL27191.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148703315|gb|EDL35262.1| mCG48756 [Mus musculus]
gi|149022302|gb|EDL79196.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022303|gb|EDL79197.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022304|gb|EDL79198.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022305|gb|EDL79199.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|187957410|gb|AAI58039.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|187957412|gb|AAI57920.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
Length = 357
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|148695240|gb|EDL27187.1| mCG1305, isoform CRA_a [Mus musculus]
Length = 351
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|126347016|ref|XP_001368514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
[Monodelphis domestica]
Length = 356
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 3 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 62
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 63 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 121
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 122 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 181
Query: 265 KMN 267
+M
Sbjct: 182 EMQ 184
>gi|397489099|ref|XP_003815574.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Pan paniscus]
gi|426337838|ref|XP_004032902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Gorilla gorilla gorilla]
gi|119631468|gb|EAX11063.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a [Homo
sapiens]
gi|119631470|gb|EAX11065.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a [Homo
sapiens]
gi|194375464|dbj|BAG56677.1| unnamed protein product [Homo sapiens]
gi|221046256|dbj|BAH14805.1| unnamed protein product [Homo sapiens]
Length = 356
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|197098694|ref|NP_001125266.1| heterogeneous nuclear ribonucleoprotein A3 [Pongo abelii]
gi|55727504|emb|CAH90507.1| hypothetical protein [Pongo abelii]
Length = 355
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|112421201|ref|NP_001036248.1| heterogeneous nuclear ribonucleoprotein A1 [Macaca mulatta]
gi|2500575|sp|Q28521.3|ROA1_MACMU RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|1332379|gb|AAB01436.1| hnRNP A1-gamma isoform [Macaca mulatta]
Length = 320
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + +SV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|225712192|gb|ACO11942.1| RNA-binding protein squid [Lepeophtheirus salmonis]
Length = 268
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 29/164 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+P ++NDLKEYFE +G++ +K+D+ TGRS+GF F+ F++ ES + ++
Sbjct: 19 LFVGGLPQEASENDLKEYFEAYGSVTSTVLKMDQMTGRSRGFAFVVFATPESLESVLEQE 78
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA--SKVFVGS-LTPDLTESDLREHFEYYGAVVDVLI 222
H + + K+ ++ A KV+VG L +TE D++ HF YG VV++
Sbjct: 79 HVVKGK----------KVACKKATAKQGKVYVGKFLDGSITEEDIKSHFSQYGTVVEIQR 128
Query: 223 P-------KPFREFAFVTFELDSVAKSLI--------GQHVNIK 251
P +P + F FVTF+ + A+ L+ GQ V IK
Sbjct: 129 PVDRSKNSEP-KNFCFVTFDKEDPAEKLLKEKKVTLNGQEVEIK 171
>gi|325185730|emb|CCA20211.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 465
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D Q L + G+ W T+ L+++F ++G L A + DK +G+ +GFGF+ F+
Sbjct: 94 DTGAQKQPGKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADV 153
Query: 156 ESALKAMLKKHKIGNRICDVR--IP-ESTKIGTEEPVAS----------------KVFVG 196
+ + + H I R +V+ IP + T G + +S KVFVG
Sbjct: 154 AVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVG 213
Query: 197 SLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVNIK 251
L P +TE D R +FE +G + D ++ + R F FVTFE + +I + +
Sbjct: 214 GLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELH 273
Query: 252 DKKVVVMEATPKK 264
K V + A PK+
Sbjct: 274 GKVVEIKRAEPKE 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 81 ASGNSSATQSKRSYPDNSGPV--QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
ASG S S NSG V ++ + V G+P + T+ D + YFE+FG + A V D
Sbjct: 183 ASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFD 242
Query: 139 KNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
+ T RS+GFGF+ F + + + K H++ ++ +++ E
Sbjct: 243 RETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAE 283
>gi|348580545|ref|XP_003476039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Cavia
porcellus]
Length = 355
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + + +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAISREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|291389620|ref|XP_002711397.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+HFE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDHFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|403309130|ref|XP_003944981.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Saimiri boliviensis boliviensis]
Length = 385
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 13/191 (6%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A SK P P Q L + G+ + TD L+ +FEQ+ TL V D NT RS+G
Sbjct: 63 AILSKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWRTLTDCVVMRDPNTKRSRG 120
Query: 147 FGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPD 201
FGF+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D
Sbjct: 121 FGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRGDSRRPGAHLTVKKKIFVGGIKED 180
Query: 202 LTESDLREHFEYYGA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKV 255
E LR++FE YG V++++ + R FAFVTF + DS+ K +I ++ +
Sbjct: 181 AEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHGC 240
Query: 256 VVMEATPKKKM 266
V +A K++M
Sbjct: 241 EVRKALSKQEM 251
>gi|11040|emb|CAA44504.1| hrp40.2 [Drosophila melanogaster]
Length = 345
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|24646607|ref|NP_731825.1| squid, isoform B [Drosophila melanogaster]
gi|55584092|sp|Q08473.3|SQD_DROME RecName: Full=RNA-binding protein squid; AltName:
Full=Heterogeneous nuclear ribonucleoprotein 40;
Short=HNRNP 40
gi|23171184|gb|AAF54963.2| squid, isoform B [Drosophila melanogaster]
Length = 344
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>gi|402867876|ref|XP_003898055.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Papio anubis]
Length = 320
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P+ P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPEE--PEQLRKLFIGGLSFETTDETLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVGEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF + DSV K++I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKM 266
+A K++M
Sbjct: 179 KALSKQEM 186
>gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 41/235 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + ++ K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKIGTEEPV------ASKVFVGSLTPDLTESDLR 208
H I R + + +P ++ I PV K+FVG L +TE + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+TF+ D ++ + + + K+V ++
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 263 KKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGG------NGYYDNRQQQQGGYN 311
K+++ + RSP+++ YGGG N Y++N G YN
Sbjct: 187 PKEISPVSN-----------IRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN 230
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P + G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F S
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Query: 155 HESALKAMLKK-HKIGNRICDVR--IPE--STKIGTEEPVASKVFVG 196
++ + + K H++ ++ +V+ +P+ S P+AS V G
Sbjct: 161 DDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG 207
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F YG VV+ +I + R F F+ F V++ +I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|410036104|ref|XP_525973.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Pan
troglodytes]
Length = 371
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 12/182 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 54 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 113
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 114 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 172
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 173 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 232
Query: 265 KM 266
+M
Sbjct: 233 EM 234
>gi|34785465|gb|AAH57655.1| Hnrpa3 protein, partial [Mus musculus]
Length = 303
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|355750652|gb|EHH54979.1| hypothetical protein EGM_04098, partial [Macaca fascicularis]
Length = 326
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 12/182 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KM 266
+M
Sbjct: 184 EM 185
>gi|297269736|ref|XP_002799946.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Macaca mulatta]
Length = 273
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
A+ + HK+ R+ + V +S + G V K FVGS+ D E LR++F+ Y
Sbjct: 70 AAINARPHKVDGRVVEPKRAVSREDSQRPGAHFTV-KKTFVGSIKEDTEEHHLRDYFDQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|426247087|ref|XP_004017318.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PKQLWKLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|30696616|ref|NP_851195.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334188426|ref|NP_001190546.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009262|gb|AED96645.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009265|gb|AED96648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 448
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 41/235 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + ++ K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKIGTEEPV------ASKVFVGSLTPDLTESDLR 208
H I R + + +P ++ I PV K+FVG L +TE + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+TF+ D ++ + + + K+V ++
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 263 KKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGG------NGYYDNRQQQQGGYN 311
K+++ + RSP+++ YGGG N Y++N G YN
Sbjct: 187 PKEISPVSN-----------IRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN 230
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P + G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F S
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Query: 155 HESALKAMLKK-HKIGNRICDVR--IPE--STKIGTEEPVASKVFVG 196
++ + + K H++ ++ +V+ +P+ S P+AS V G
Sbjct: 161 DDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG 207
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F YG VV+ +I + R F F+ F V++ +I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|157108578|ref|XP_001650293.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108879258|gb|EAT43483.1| AAEL005049-PA [Aedes aegypti]
Length = 287
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
N G + L V G+ T+ DL+ +F Q+G +E NVK D TGRS+GF FI F+S E
Sbjct: 20 NPGRDDDRKLFVGGLSKETTEQDLRNHFGQYGEIESVNVKTDPQTGRSRGFAFIIFNSPE 79
Query: 157 SALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
S K + + H + + D + ++ + K+FVG L+P+ ++ +++ FE +G
Sbjct: 80 SIDKVVAFEDHTVNGKKVDPKKAKARQ--------GKIFVGGLSPETSDEEVKTFFEQFG 131
Query: 216 AVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
VV++ +P + F F+T++ ++V L+ + K+V V ATPK
Sbjct: 132 NVVEMEMPFDKMKNQRKGFCFITYDSEAVVTELLKTPKQTVGGKEVDVKRATPK 185
>gi|18423760|ref|NP_568826.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42573682|ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15292725|gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20465895|gb|AAM20100.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332009263|gb|AED96646.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009264|gb|AED96647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 460
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 41/235 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + ++ K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKIGTEEPV------ASKVFVGSLTPDLTESDLR 208
H I R + + +P ++ I PV K+FVG L +TE + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+TF+ D ++ + + + K+V ++
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 263 KKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGG------NGYYDNRQQQQGGYN 311
K+++ + RSP+++ YGGG N Y++N G YN
Sbjct: 187 PKEISPVSN-----------IRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN 230
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P + G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F S
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Query: 155 HESALKAMLKK-HKIGNRICDVR--IPE--STKIGTEEPVASKVFVG 196
++ + + K H++ ++ +V+ +P+ S P+AS V G
Sbjct: 161 DDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG 207
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F YG VV+ +I + R F F+ F V++ +I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 41/235 (17%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + ++ K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 166 HKIGNRICDVR--IP---------ESTKIGTEEPV------ASKVFVGSLTPDLTESDLR 208
H I R + + +P ++ I PV K+FVG L +TE + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATP 262
+F+ +G + DV++ +P R F F+TF+ D ++ + + + K+V ++
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 263 KKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGG------NGYYDNRQQQQGGYN 311
K+++ + RSP+++ YGGG N Y++N G YN
Sbjct: 187 PKEISPVSN-----------IRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P + G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F S
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Query: 155 HESALKAMLKK-HKIGNRICDVR--IPE--STKIGTEEPVASKVFVG 196
++ + + K H++ ++ +V+ +P+ S P+AS V G
Sbjct: 161 DDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG 207
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LR++F YG VV+ +I + R F F+ F V++ +I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHIIDGRTVEAKKAVPR 83
>gi|297681162|ref|XP_002818335.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pongo abelii]
Length = 321
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PKQLRKLFIGGLNFETTNESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + + +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAISREDSQRPGAHLTV-KKIFVGGIKKDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHVCEVRKALSKQEM 186
>gi|380017405|ref|XP_003692647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
florea]
Length = 439
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVPLVLQNG 74
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K P KVF+G L ++TE+DLR F +G V++
Sbjct: 75 PHQLDGRTIDPKPCNPRTQQKPKRSGGFP---KVFLGGLPSNVTETDLRSFFTRFGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK---KKMNERQ 270
V+I K R F F++FE + + +H VN+ K+V + A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKRAEPRDSSSKMNDSH 191
Query: 271 DNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ ++ N GG NG
Sbjct: 192 QGQWGPPQQGGPPMGMAGNMGPMGGPNG 219
>gi|148697232|gb|EDL29179.1| mCG1035404 [Mus musculus]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|148707568|gb|EDL39515.1| mCG1047313 [Mus musculus]
Length = 316
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E A+ + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVAAALCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|387539574|gb|AFJ70414.1| heterogeneous nuclear ribonucleoprotein A3 [Macaca mulatta]
Length = 378
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|297264391|ref|XP_001096533.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
3 [Macaca mulatta]
Length = 336
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|256081434|ref|XP_002576975.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645374|emb|CCD59903.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 380
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W +NDLKEYF ++G + +K+D+ TG S+GFGF+ S + K + +
Sbjct: 53 LFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSVP 112
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + N+ D P+ K + EP+ K+FVG + P++TE +RE+F +G V + +P
Sbjct: 113 EHWLKNKKID---PKKAK-PSREPL-KKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPY 167
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ 246
+ + FV+F ++ AK I +
Sbjct: 168 DTQKGKRKHYIFVSFSTEAAAKKAISK 194
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI T++ ++EYF FG +E ++ D G+ K + F+ FS+ +A KA+ K+
Sbjct: 136 IFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKE 195
Query: 166 HK-IGNRICDVRI 177
+ I R CDVR+
Sbjct: 196 RQDIFGRQCDVRV 208
>gi|328779568|ref|XP_393451.4| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
mellifera]
Length = 442
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVPLVLQNG 74
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K P KVF+G L ++TE+DLR F +G V++
Sbjct: 75 PHQLDGRTIDPKPCNPRTQQKPKRSGGFP---KVFLGGLPSNVTETDLRSFFTRFGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK---KKMNERQ 270
V+I K R F F++FE + + +H VN+ K+V + A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKRAEPRDSSSKMNDSH 191
Query: 271 DNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ ++ N GG NG
Sbjct: 192 QGQWGPPQQGGPPMGMAGNMGPMGGPNG 219
>gi|312373340|gb|EFR21099.1| hypothetical protein AND_17568 [Anopheles darlingi]
Length = 808
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 78 TFDASGNSSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
T +G SSA Q+ ++ D L V G+ W TD +LKE+F +G +E NV
Sbjct: 25 TAPVTGGSSADQAGGGGSSGENNARDDDRKLFVGGLSWETTDKELKEHFGTYGDIESINV 84
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K D TGRS+GF FI + ES K + H I N+ D P+ K K+F
Sbjct: 85 KTDPVTGRSRGFAFIVYKQAESIDKVVAAGDHIINNKKVD---PKKAKA-----RHGKIF 136
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HV 248
VG LT ++++ +++ F +G +V+V +P + F F+T++ V L+
Sbjct: 137 VGGLTTEISDDEIKTFFGQFGTIVEVEMPFDKQKNQRKGFCFITYDSVQVVNELLKTPKQ 196
Query: 249 NIKDKKVVVMEATPKKKMN 267
I K+V V +ATPK N
Sbjct: 197 TICGKEVDVKKATPKPDNN 215
>gi|295673172|ref|XP_002797132.1| heterogeneous nuclear ribonucleoprotein A1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282504|gb|EEH38070.1| heterogeneous nuclear ribonucleoprotein A1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 642
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 44/201 (21%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD LK+YF QFG ++ V D TGRS+GFGF+ F ++ M+K+
Sbjct: 93 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPKTVNTVMVKE 152
Query: 166 HKIGNRICDVRI----PESTKIGTEEPV-------------------------------- 189
H + +I + P++ + P+
Sbjct: 153 HYLDGKIVGISFCNHYPQAKQAENTAPIWRASKLRLRASRLTKGTQQIDPKRAIPRDEQE 212
Query: 190 -ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKS 242
SK+FVG ++ + TE D ++ F +G VVD + +P R F FVTF+ ++ ++
Sbjct: 213 RTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMIDKDSGRP-RGFGFVTFDSEAAVEA 271
Query: 243 LIGQHVNIKDKKVVVMEATPK 263
+ + I K + V +A P+
Sbjct: 272 TLSGPLEILGKPIEVKKAQPR 292
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ + + V G+ T+ D K++F QFG + A + +DK++GR +GFGF+ F S E+A++A
Sbjct: 213 RTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMIDKDSGRPRGFGFVTFDS-EAAVEA 271
Query: 162 ML 163
L
Sbjct: 272 TL 273
>gi|296490667|tpg|DAA32780.1| TPA: mCG1035404-like [Bos taurus]
Length = 380
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|255576302|ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223531524|gb|EEF33355.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 478
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LKEYF ++G + A + D+ TGR++GFGF+ F+ A + ++ K
Sbjct: 8 LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P S+ G+ P + K+FVG L +T++D +++FE
Sbjct: 68 HMIDGRTVEAKKAVPRDDQHILNRNTSSIHGSPGPGRTKKIFVGGLASTVTDNDFKKYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ D+V + L + K V V A PK+
Sbjct: 128 QFGNITDVVVMYDHNTQRP-RGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKE 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T TDND K+YFEQFG + V D NT R +GFGFI + S ++
Sbjct: 101 GPGRTKKIFVGGLASTVTDNDFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 DRVLHKTFHELNGKMVEVK 179
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG VV+ +I + R F FV F +VA+ +I
Sbjct: 7 KLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVIVD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHMIDGRTVEAKKAVPR 83
>gi|291391798|ref|XP_002712349.1| PREDICTED: mCG1035404-like [Oryctolagus cuniculus]
Length = 378
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|397520388|ref|XP_003830301.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pan paniscus]
Length = 320
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GF F+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTACVVMRDPNTKRSRGFEFVTYAAVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 9/173 (5%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+N + + G+ W T++ L+EYF ++G + + D NTGRS+GFGF+ F + S +
Sbjct: 128 ENCKMFIGGLNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAPSSVDEV 187
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-- 219
+ +H + ++ D P+ E+ K+FVG L D+ + E+F +G ++D
Sbjct: 188 VKTQHILDGKVID---PKRAIPREEQDKTGKIFVGGLGTDVRPKEFEEYFSQWGTIIDAQ 244
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
+++ K R F FVT++ D+ K ++ K K++ + A P+ + +
Sbjct: 245 LMLDKDTGRSRGFGFVTYDSPDAAEKVCESRYREFKGKQIEIKRAEPRHQQKQ 297
>gi|350406107|ref|XP_003487656.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
impatiens]
Length = 426
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVPLVLQNG 74
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K P KVF+G L ++TE+DLR F +G V++
Sbjct: 75 PHQLDGRTIDPKPCNPRTQQKPKRSGGFP---KVFLGGLPSNVTETDLRSFFTRFGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK---KKMNERQ 270
V+I K R F F++FE + + +H VN+ K+V + A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKRAEPRDSSSKMNDSH 191
Query: 271 DNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ ++ N GG NG
Sbjct: 192 QGQWGPPQQGGPPMGMAGNMGPMGGPNG 219
>gi|256081430|ref|XP_002576973.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645372|emb|CCD59901.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 381
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W +NDLKEYF ++G + +K+D+ TG S+GFGF+ S + K + +
Sbjct: 53 LFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSVP 112
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + N+ D P+ K + EP+ K+FVG + P++TE +RE+F +G V + +P
Sbjct: 113 EHWLKNKKID---PKKAK-PSREPL-KKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPY 167
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ 246
+ + FV+F ++ AK I +
Sbjct: 168 DTQKGKRKHYIFVSFSTEAAAKKAISK 194
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI T++ ++EYF FG +E ++ D G+ K + F+ FS+ +A KA+ K+
Sbjct: 136 IFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKE 195
Query: 166 HK-IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLT 203
+ I R CDVR+ + + VA K + L P+ +
Sbjct: 196 RQDIFGRQCDVRVAVTRDQANRQKVALKQWYNWLDPNFS 234
>gi|403258685|ref|XP_003921883.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Saimiri
boliviensis boliviensis]
Length = 378
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|320581591|gb|EFW95811.1| Subunit of cleavage factor I [Ogataea parapolymorpha DL-1]
Length = 431
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T+ +K YF QFG + + D TGRS+GFGF+ F+S S + + K
Sbjct: 108 MFIGGLNWETTEESMKNYFSQFGDVIDLTIMKDNATGRSRGFGFLTFASSSSVDEVLKKT 167
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + ++ D + IP+ E+ K+FVG + P++TE++ E+F+ +G ++D ++
Sbjct: 168 HVLDGKLIDPKRAIPKE-----EQDKTGKIFVGGVAPEVTEAEFTEYFQQFGNIIDSQLM 222
Query: 222 IPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
+ K R + FVT++ D+V + ++V K + + A P+ +
Sbjct: 223 LDKDTGRSRGYGFVTYDSPDAVDRVTQNKYVLFHGKNMEIKRAEPRNQ 270
>gi|296220327|ref|XP_002756261.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Callithrix jacchus]
Length = 304
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|38328278|gb|AAH62198.1| Hnrpa3 protein [Mus musculus]
Length = 318
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|443692084|gb|ELT93758.1| hypothetical protein CAPTEDRAFT_170758 [Capitella teleta]
Length = 238
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
+ V G+ W T D+K+YF +FG + A +K D+NTGRS+GFGF+ F + + +
Sbjct: 65 IFVGGLSWETTVKDMKDYFSKFGEVTDATLKTDQNTGRSRGFGFVTFVDSTCVNRVIEQT 124
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + + D P+ K K+FVG L P++ E ++R+HF YG V +V +P
Sbjct: 125 QHTLHGKNID---PKRAKARPGREPVKKIFVGGLDPEVPEDEIRQHFSKYGKVEEVELPF 181
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F FV+F+ +L
Sbjct: 182 DRSKNQRRFFCFVSFDTGEAVDALC 206
>gi|340723465|ref|XP_003400110.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
terrestris]
Length = 443
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L+ YF ++G + V + +GRS+GFGF+ FS + +
Sbjct: 15 LFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVPLVLQNG 74
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K P KVF+G L ++TE+DLR F +G V++
Sbjct: 75 PHQLDGRTIDPKPCNPRTQQKPKRSGGFP---KVFLGGLPSNVTETDLRSFFTRFGKVME 131
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQH-VNIKDKKVVVMEATPK---KKMNERQ 270
V+I K R F F++FE + + +H VN+ K+V + A P+ KMN+
Sbjct: 132 VVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKRAEPRDSSSKMNDSH 191
Query: 271 DNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ ++ N GG NG
Sbjct: 192 QGQWGPPQQGGPPMGMAGNMGPMGGPNG 219
>gi|74096079|ref|NP_001027721.1| CiMsi protein [Ciona intestinalis]
gi|6681425|dbj|BAA88672.1| CiMsi [Ciona intestinalis]
Length = 393
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 20/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ T L+ YFE +G + + DK TG S+GFGF+ F ++ S++ A++K
Sbjct: 12 IFVGGLARQTTLEGLRSYFENYGEVSDCVLMKDKETGFSRGFGFVTF-TNPSSVAAVVKA 70
Query: 166 --HKIGNRICDVRIPESTKIGTEE--------PVASKVFVGSLTPDLTESDLREHFEYYG 215
H + N++ D + P +TK ++ A K+F+G ++ + +E+D++ +FE YG
Sbjct: 71 RPHNLDNKMIDPK-PCTTKAAQQQKKVSSTNYSKAHKIFIGGISMEASEADVQSYFERYG 129
Query: 216 AVVDVL-------IPKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
VV+V+ KP + F FVTFE +S I +H + IKDK+V +A + KM
Sbjct: 130 TVVEVVFVVNKEDTSKPHKGFGFVTFEDESSVDQAIAKHYHIIKDKRVEAKKAESRDKM 188
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF-ELDSVAKSL 243
A K+FVG L T LR +FE YG V D ++ K R F FVTF SVA +
Sbjct: 9 AGKIFVGGLARQTTLEGLRSYFENYGEVSDCVLMKDKETGFSRGFGFVTFTNPSSVAAVV 68
Query: 244 IGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDR 278
+ N+ +K + T K +++ + N+ +
Sbjct: 69 KARPHNLDNKMIDPKPCTTKAAQQQKKVSSTNYSK 103
>gi|390464603|ref|XP_003733247.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like, partial [Callithrix jacchus]
Length = 288
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIP---ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + HK+ R+ + + E ++ + K+FVG + D E LR++FE YG
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPSAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 216 A--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|440901911|gb|ELR52772.1| Heterogeneous nuclear ribonucleoprotein A3, partial [Bos grunniens
mutus]
Length = 182
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 2 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 61
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LR++FE Y
Sbjct: 62 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKY 120
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 121 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 179
>gi|350535755|ref|NP_001233020.1| uncharacterized protein LOC100167805 [Acyrthosiphon pisum]
gi|239788448|dbj|BAH70906.1| ACYPI008564 [Acyrthosiphon pisum]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ T+ DL E+F QFG +E NVKVD TGR++GF FI + + E A+
Sbjct: 51 IFVGGLKGETTEKDLSEHFGQFGEIENINVKVDAATGRARGFAFIVYKTMEGLDNALACT 110
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
H I ++ D + ++ + K+FVG L+PDLT+ D++++F+ Y +V+ +P
Sbjct: 111 NHVINDKKIDPKKAKARHV--------KLFVGGLSPDLTDDDIKDYFKRYAPLVNAEMPY 162
Query: 224 ----KPFREFAFVTFELDSVAKSLIG--QHVNIKDKKVVVMEATPK 263
+ F FVTF+ ++ +HV I K+V V +A K
Sbjct: 163 DKVKNQRKGFCFVTFDCMQAVTEILKTPKHV-INGKQVDVKKAALK 207
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAV------VDVLIPKPFREFAFVTFE-LDSVAKSLI 244
K+FVG L + TE DL EHF +G + VD + R FAF+ ++ ++ + +L
Sbjct: 50 KIFVGGLKGETTEKDLSEHFGQFGEIENINVKVDAATGRA-RGFAFIVYKTMEGLDNALA 108
Query: 245 GQHVNIKDKKV 255
+ I DKK+
Sbjct: 109 CTNHVINDKKI 119
>gi|344255674|gb|EGW11778.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Cricetulus griseus]
Length = 340
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|74004684|ref|XP_543761.2| PREDICTED: uncharacterized protein LOC608074 isoform 2 [Canis lupus
familiaris]
gi|410968904|ref|XP_003990939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Felis catus]
Length = 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|74228812|dbj|BAE21894.1| unnamed protein product [Mus musculus]
Length = 379
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|34740329|ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|397489097|ref|XP_003815573.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Pan paniscus]
gi|426337836|ref|XP_004032901.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Gorilla gorilla gorilla]
gi|51338779|sp|P51991.2|ROA3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|34327775|gb|AAQ63629.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|62822160|gb|AAY14709.1| unknown [Homo sapiens]
gi|85567495|gb|AAI12028.1| Heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|109730489|gb|AAI13471.1| HNRPA3 protein [Homo sapiens]
gi|119631469|gb|EAX11064.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|119631471|gb|EAX11066.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|410261478|gb|JAA18705.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261480|gb|JAA18706.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261482|gb|JAA18707.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261484|gb|JAA18708.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261486|gb|JAA18709.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261488|gb|JAA18710.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261490|gb|JAA18711.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261492|gb|JAA18712.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261494|gb|JAA18713.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351651|gb|JAA42429.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351653|gb|JAA42430.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
Length = 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|402888739|ref|XP_003907708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Papio
anubis]
Length = 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|332209432|ref|XP_003253815.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Nomascus leucogenys]
Length = 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|329664164|ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus]
gi|426220819|ref|XP_004004609.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Ovis aries]
Length = 380
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|31559916|ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37674277|ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37693507|ref|NP_937765.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|162329577|ref|NP_001104764.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|311272700|ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa]
gi|30316201|sp|Q8BG05.1|ROA3_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|51316556|sp|Q6URK4.1|ROA3_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|23274033|gb|AAH23908.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|23468331|gb|AAH38364.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|34327777|gb|AAQ63630.1| heterogeneous nuclear ribonucleoprotein A3 variant a [Rattus
norvegicus]
gi|40787633|gb|AAH64824.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|51980308|gb|AAH81878.1| Heterogeneous nuclear ribonucleoprotein A3 [Rattus norvegicus]
gi|58801248|dbj|BAD89508.1| heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|74143970|dbj|BAE41285.1| unnamed protein product [Mus musculus]
gi|148695241|gb|EDL27188.1| mCG1305, isoform CRA_b [Mus musculus]
gi|149022310|gb|EDL79204.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022311|gb|EDL79205.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022312|gb|EDL79206.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022313|gb|EDL79207.1| rCG27231, isoform CRA_c [Rattus norvegicus]
Length = 379
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|390464176|ref|XP_003733182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Callithrix jacchus]
Length = 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFDTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|242006645|ref|XP_002424159.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
gi|212507484|gb|EEB11421.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
Length = 423
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T L+ YF ++G + V + +GRS+GFGF+ F+ + +
Sbjct: 21 LFVGGLSWETTQEALQRYFSRYGDVVDCVVMKNTESGRSRGFGFVTFADPTNVGVVLQNG 80
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R K P KVF+G L ++TE+DLR+ F YG V++
Sbjct: 81 PHVLDGRTIDPKPCNPRTLSKPKRNNGYP---KVFLGGLPSNVTETDLRQFFMRYGKVME 137
Query: 220 VLI-----PKPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
V+I K R F F++FE D+V + + VN+ K+V + +A P+ + D+
Sbjct: 138 VVIMYDQEKKKSRGFGFLSFEDEDAVERCVADHFVNLHGKQVEIKKAEPRDASGKMNDSG 197
Query: 274 NNF 276
N +
Sbjct: 198 NTW 200
>gi|124505421|ref|XP_001351452.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23498210|emb|CAD49181.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 358
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ GIP T + EYFEQ+GT++ + D T R++GF F+ +SH + + +
Sbjct: 116 FFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDT 175
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIP 223
H++ + DVR +T T + K+FVG L T+ L +F +G VV +++
Sbjct: 176 HELNGKRVDVREENNT---TPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD 232
Query: 224 KPFRE--FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK-KMNERQDNRNNFDR 278
R F FV F +SVAK L + I DK V V +A PKK KM+ ++ N NF +
Sbjct: 233 SSGRSRCFGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPKKPKMSIKRSNNKNFSK 291
>gi|125538654|gb|EAY85049.1| hypothetical protein OsI_06408 [Oryza sativa Indica Group]
Length = 504
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++FE++G + + + DK+T +GFGF+ FS K + +
Sbjct: 177 IFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE 236
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H I R + S I + P K+FVG L LTE +LREHF YG +V+ I
Sbjct: 237 HVIDGRTLKGQSQGSNVI-KDGPRPRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLD 295
Query: 223 --PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + +I G+ ++ K+V + +A PKK
Sbjct: 296 HSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 341
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-- 163
+ V G+P + T+++L+E+F +G + + +D +TGRS+GFGF+ F S +S + +
Sbjct: 263 IFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEG 322
Query: 164 KKHKIGNRICDVRIPESTKIG 184
+ +G + +++ E K G
Sbjct: 323 RMRDLGGKQVEIKKAEPKKHG 343
>gi|426241336|ref|XP_004014547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKGSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|402864694|ref|XP_003896588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Papio
anubis]
Length = 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTEESLRSHFEQWGTLADCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR+ FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDCFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|195055059|ref|XP_001994440.1| GH17116 [Drosophila grimshawi]
gi|193892203|gb|EDV91069.1| GH17116 [Drosophila grimshawi]
Length = 379
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 21/199 (10%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
D +GNS+ S + P L + G+ + TD++LK +FE++G + V D
Sbjct: 6 DQNGNSNGQHDDDSITE---PEHMRKLFIGGLDYRTTDDNLKAHFEKWGQIVDVVVMKDP 62
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR--IP----ESTKIGTEEPVAS 191
T RS+GFGFI + SH S + K HKI R+ + + +P +S G
Sbjct: 63 RTKRSRGFGFITY-SHSSMVDEAQKARPHKIDGRVVEPKRAVPRQEIDSPNAGA---TVK 118
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIG 245
K+FVG+L D E LR++F++YG++VD+ I R FAFV F + D V K ++
Sbjct: 119 KLFVGALKDDHDEQSLRDYFQHYGSIVDINIVMDKETGKKRGFAFVEFDDYDPVDKVVLQ 178
Query: 246 QHVNIKDKKVVVMEATPKK 264
+ + K V V +A PK+
Sbjct: 179 KQHQLNGKMVDVKKALPKQ 197
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 91 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 150
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 151 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 209
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 210 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 269
Query: 265 KMN 267
+M
Sbjct: 270 EMQ 272
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 28/144 (19%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GF F+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTYSCV 86
Query: 156 ESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
E D + PE + K+F+G L+ + T+ LREHFE +G
Sbjct: 87 EEGH--------------DPKEPEQLR---------KLFIGGLSFETTDDSLREHFEKWG 123
Query: 216 AVVDVLI-----PKPFREFAFVTF 234
+ D ++ K R F FVT+
Sbjct: 124 TLTDCVVMRDPQTKRSRGFGFVTY 147
>gi|255717440|ref|XP_002555001.1| KLTH0F18766p [Lachancea thermotolerans]
gi|238936384|emb|CAR24564.1| KLTH0F18766p [Lachancea thermotolerans CBS 6340]
Length = 588
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
ASG SA + + + D S + + + G+ W T+++LK+YF ++G + + D
Sbjct: 187 ASGPGSAAEQRTNKADLSRDI--CKMFIGGLNWETTEDNLKDYFSKYGQVTDLKIMRDNA 244
Query: 141 TGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
TGRS+GFGF+ F+ S + + +H + ++ D P+ E+ K+FVG + P
Sbjct: 245 TGRSRGFGFLTFAEASSVDEVVKTQHILDGKVID---PKRAIPREEQDKTGKIFVGGIGP 301
Query: 201 DLTESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKK 254
D+ + E F +G ++D +++ K R F F+T++ D+V + + + K K+
Sbjct: 302 DVRPKEFEEFFSQWGTIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCENKFIEFKGKR 361
Query: 255 VVVMEATPK 263
+ + A P+
Sbjct: 362 IEIKRAEPR 370
>gi|296190480|ref|XP_002743214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Callithrix jacchus]
Length = 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+F G + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFAGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DS+ K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|224114443|ref|XP_002316761.1| predicted protein [Populus trichocarpa]
gi|222859826|gb|EEE97373.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LKEYF ++G + A + D+ TGR++GFGF+ F+ A + +++K
Sbjct: 8 LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVAERVIMEK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P S G+ P + K+FVG L +TE++ +++FE
Sbjct: 68 HVIDGRTVEAKKAVPRDDQHILSRSISNIHGSPGPGRTKKIFVGGLASTVTENEFKKYFE 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
YG ++DV++ +P R F F+T++ + ++ + + + K V V A PK+
Sbjct: 128 QYGIIIDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T+N+ K+YFEQ+G + V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTKKIFVGGLASTVTENEFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 DRVLHKTFHELNGKMVEVK 179
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG VV+ +I + R F FV F +VA+ +I +
Sbjct: 7 KLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVAERVIME 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHVIDGRTVEAKKAVPR 83
>gi|291384354|ref|XP_002708769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+G L V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFEMTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVR---IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + HK+ R+ + + + E ++ K+FVG + D E LR++FE YG
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVLREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 216 A--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|50305631|ref|XP_452776.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641909|emb|CAH01627.1| KLLA0C12925p [Kluyveromyces lactis]
Length = 570
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T+ L++YF ++G + + D TGRS+GFGF+ F + S + + +
Sbjct: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + ++ D P+ E+ K+FVG + PD+ + E F +G+++D +++
Sbjct: 248 HILDGKVID---PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLD 304
Query: 224 KPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
K R F F+T++ D+V + + + K K++ + A P++ ++Q
Sbjct: 305 KDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPRQLQKQKQ 355
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFE-LDSVAKSLIG 245
K+F+G L + TE LR++F YGAV +V I K R F F+TFE SV + +
Sbjct: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
Query: 246 QHVNIKDKKVV 256
QH I D KV+
Sbjct: 247 QH--ILDGKVI 255
>gi|36102|emb|CAA29922.1| unnamed protein product [Homo sapiens]
Length = 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE +
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQF 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + + FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKKGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|195391065|ref|XP_002054186.1| GJ22934 [Drosophila virilis]
gi|194152272|gb|EDW67706.1| GJ22934 [Drosophila virilis]
Length = 355
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 21/199 (10%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
D +GNS+ S + P L + G+ + TD++LK +FE++G + V D
Sbjct: 6 DQNGNSNGQHDDDSITE---PEHMRKLFIGGLDYRTTDDNLKAHFEKWGQIVDVVVMKDP 62
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR--IP----ESTKIGTEEPVAS 191
T RS+GFGFI + SH S + K HKI R+ + + +P +S G
Sbjct: 63 RTKRSRGFGFITY-SHSSMVDEAQKARPHKIDGRVVEPKRAVPRQDIDSPNAGA---TVK 118
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIG 245
K+FVG+L D E LR++F++YG++VD+ I R FAFV F + D V K ++
Sbjct: 119 KLFVGALKDDHDEQSLRDYFQHYGSIVDINIVMDKETGKKRGFAFVEFDDYDPVDKVVLQ 178
Query: 246 QHVNIKDKKVVVMEATPKK 264
+ + K V V +A PK+
Sbjct: 179 KQHQLNGKMVDVKKALPKQ 197
>gi|402882999|ref|XP_003905018.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Papio
anubis]
Length = 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKKAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPKPFRE-----FAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + + FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKTGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMNERQDNRNN 275
+M R +
Sbjct: 206 EMQSAGSQRGH 216
>gi|344284648|ref|XP_003414077.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Loxodonta africana]
Length = 372
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +S+ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR +FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRHYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R F FVTF + DSV K +I ++ + V + K++M
Sbjct: 129 GKIEVIEIMTDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKVLSKQEM 186
>gi|336472157|gb|EGO60317.1| hypothetical protein NEUTE1DRAFT_56573, partial [Neurospora
tetrasperma FGSC 2508]
Length = 139
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG + V D TGRS+GFGF+ F ++ M+K+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVKE 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H + +I D P+ E+ SK+FVG ++ + T+ + RE+F +G VVD +
Sbjct: 61 HYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMD 117
Query: 223 ---PKPFREFAFVTFELDS 238
+P R F FVTFE ++
Sbjct: 118 KDTGRP-RGFGFVTFESEA 135
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR+ P + + + + V G+ TD++ +EYF QFG + A + +DK+TGR +GFGF+
Sbjct: 71 KRAIPRDEQE-KTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFV 129
Query: 151 RFSSHESALKA 161
F S E+ ++A
Sbjct: 130 TFES-EAGVEA 139
>gi|194388148|dbj|BAG65458.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFATYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|89269835|emb|CAJ82537.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Xenopus (Silurana)
tropicalis]
Length = 327
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T++ L+ Y+EQ+G L V D + RS+GFGF+ FSS + +M +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIESI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R F FVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
+
Sbjct: 190 S 190
>gi|390474591|ref|XP_002757923.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 3 [Callithrix jacchus]
Length = 339
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQPRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
A+ + H + R+ + + S + ++ P A K+FVG + D E LR++FE Y
Sbjct: 70 AAVNARPHNVDGRVVEPKRAVSRE-DSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R+FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|329112539|ref|NP_001192271.1| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 350
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T++ L+ Y+EQ+G L V D + RS+GFGF+ FSS + +M +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIESI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R F FVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
+
Sbjct: 190 S 190
>gi|329112537|ref|NP_001016926.2| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 328
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T++ L+ Y+EQ+G L V D + RS+GFGF+ FSS + +M +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIESI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R F FVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
+
Sbjct: 190 S 190
>gi|134024345|gb|AAI35351.1| hnrpa2b1 protein [Xenopus (Silurana) tropicalis]
Length = 349
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T++ L+ Y+EQ+G L V D + RS+GFGF+ FSS + +M +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIESI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R F FVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
+
Sbjct: 190 S 190
>gi|49402291|ref|NP_956398.1| heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
gi|27882514|gb|AAH44442.1| Heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
Length = 422
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+ +FEQ+GTL V D NT RS+GFGF+ +SS +
Sbjct: 29 PEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVN 88
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
+M + HK+ R+ + + S + + +P A K+FVG + D E+ LR++F+ +
Sbjct: 89 ASMDARPHKVDGRLVEPKRAVSRE-DSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQF 147
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G VV++++ R FAFVTF + DSV + +I ++ + V +A K++M
Sbjct: 148 GKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKALSKQEM 205
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 93 SYPDNSGPVQNT---DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S D+S P +T + V GI +N L++YF+QFG +E + VD TG +GF F
Sbjct: 110 SREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAF 169
Query: 150 IRFSSHESALKAMLKK-HKIGNRICDVR 176
+ F H+S + +++K H + C+VR
Sbjct: 170 VTFDDHDSVDRIVIQKYHTVNGHNCEVR 197
>gi|291410921|ref|XP_002721736.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRRLFIGGLSFETTNESLRSHFEQWGTLTDCMVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|291401097|ref|XP_002716928.1| PREDICTED: mCG1035404-like isoform 2 [Oryctolagus cuniculus]
Length = 355
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRAVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKALSKQ 183
Query: 265 KMN 267
+M
Sbjct: 184 EMQ 186
>gi|109098438|ref|XP_001091114.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 3 [Macaca mulatta]
gi|109098440|ref|XP_001091244.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 4 [Macaca mulatta]
gi|297263360|ref|XP_002798798.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Macaca mulatta]
Length = 320
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL D NT RS+GF F+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVAMRDPNTKRSRGFRFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKTAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|187956922|gb|AAI58075.1| EG627828 protein [Mus musculus]
gi|187956950|gb|AAI57905.1| EG627828 protein [Mus musculus]
gi|219521461|gb|AAI72011.1| EG627828 protein [Mus musculus]
Length = 351
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + +K+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPYKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMNERQDNRN 274
+M R+
Sbjct: 184 EMRSAGSQRD 193
>gi|195113003|ref|XP_002001061.1| GI10577 [Drosophila mojavensis]
gi|193917655|gb|EDW16522.1| GI10577 [Drosophila mojavensis]
Length = 359
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 21/199 (10%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
D +GNS+ S S P L + G+ + TD++LK +FE++G + V D
Sbjct: 6 DQNGNSNGQHDDDSI---SEPEHMRKLFIGGLDYRTTDDNLKAHFEKWGQIVDVVVMKDP 62
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR--IP----ESTKIGTEEPVAS 191
T RS+GFGFI + SH S + K HKI R+ + + +P +S G
Sbjct: 63 RTKRSRGFGFITY-SHSSMVDEAQKARPHKIDGRVVEPKRAVPRQDIDSPNAGA---TVK 118
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIG 245
K+FVG+L D E LR++F++YG +VD+ I R FAFV F + D V K ++
Sbjct: 119 KLFVGALKDDHDEQSLRDYFQHYGNIVDINIVMDKETGKKRGFAFVEFDDYDPVDKVVLQ 178
Query: 246 QHVNIKDKKVVVMEATPKK 264
+ + K V V +A PK+
Sbjct: 179 KQHQLNGKMVDVKKALPKQ 197
>gi|402894543|ref|XP_003910414.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Papio anubis]
gi|402894545|ref|XP_003910415.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Papio anubis]
Length = 320
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+ TL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIRGMSFETTDESLRSHFEQWRTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
A+ + HK+ R+ + V +S + G V K FVGS+ D+ E LR++F+ Y
Sbjct: 70 AAINARPHKVDGRVVEPKRAVSREDSQRPGAHFTV-KKTFVGSIKEDMEEHHLRDYFDQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K++I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|84998348|ref|XP_953895.1| RNA-binding (SR) protein [Theileria annulata]
gi|65304893|emb|CAI73218.1| RNA-binding (SR) protein, putative [Theileria annulata]
Length = 303
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 11/151 (7%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIG 169
G+ + T DLKEYF ++G + + DKNTGRS+GFGF+ F+ +S + K HKI
Sbjct: 34 GLTRSTTPEDLKEYFSKYGEVTHTEIVRDKNTGRSRGFGFVTFADRDSVNTVLRKVHKID 93
Query: 170 NRICDVRIP---ESTKI-GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV------VD 219
DV++ E +KI + ++FVG ++ +TES R++F YG + VD
Sbjct: 94 GVEADVKLAVRKEKSKILAPQYDQTKRIFVGGVSEKITESYFRDYFARYGPITSYNYLVD 153
Query: 220 VLIPKPFREFAFVTFELDSVAKSLIGQHVNI 250
+P R + FV +E A+ IG H+++
Sbjct: 154 RATNRP-RGYGFVIYENMEDAEKSIGMHLSL 183
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + V G+ T++ ++YF ++G + N VD+ T R +G+GF+ + + E A K+
Sbjct: 117 QTKRIFVGGVSEKITESYFRDYFARYGPITSYNYLVDRATNRPRGYGFVIYENMEDAEKS 176
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVAS 191
+ +G R C+ + E EE + S
Sbjct: 177 IGMHLSLG-RNCEAKFAEPKYPEKEETMIS 205
>gi|383416553|gb|AFH31490.1| heterogeneous nuclear ribonucleoprotein A3 [Macaca mulatta]
Length = 272
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|148235805|ref|NP_001079609.1| heterogeneous nuclear ribonucleoprotein D-like-A [Xenopus laevis]
gi|82241529|sp|Q7ZX83.1|HNDLA_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-A;
Short=hnRNP D-like A; Short=hnRNP DL-A
gi|28175291|gb|AAH45124.1| MGC53310 protein [Xenopus laevis]
Length = 293
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K +
Sbjct: 28 MFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETN 87
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+P+ TE ++++F +G + ++ +P
Sbjct: 88 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPI 144
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
R F FVT+ + K L+ + I K + A PK+
Sbjct: 145 DTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKE 190
>gi|432098521|gb|ELK28236.1| Heterogeneous nuclear ribonucleoprotein A1 [Myotis davidii]
Length = 316
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 12/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + T+ L+ +FEQ+GTL V D NT RS+GFGF+ +++ E AM +
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGTLTDYVVLRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + V +S + G V K+FVG + D LR++FE YG V+
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEVHHLRDYFEQYGKIEVI 134
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+++ + R FAFVTF + DSV K +I ++ + + V +A PK++M
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGRSCEVRKALPKQEM 186
>gi|71999552|ref|NP_001023573.1| Protein SQD-1, isoform a [Caenorhabditis elegans]
gi|351059312|emb|CCD74155.1| Protein SQD-1, isoform a [Caenorhabditis elegans]
Length = 305
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N +A+++ + ++ ++ + V GI + DL +F Q+G + A VK D+ GR
Sbjct: 9 NGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGR 68
Query: 144 SKGFGFIRFSSHESALKAMLKKHK-IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
S+GF F+ F++ E A+ + + I + +V+ +S + KVFVG L D
Sbjct: 69 SRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE-------NKKVFVGGLPSDY 121
Query: 203 TESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256
+E DLR HFE +G V D+ P K R FAF+ FE + A Q ++
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 257 VMEATPKKK 265
V +A P+ K
Sbjct: 182 VKKAVPQGK 190
>gi|414883904|tpg|DAA59918.1| TPA: hypothetical protein ZEAMMB73_017923 [Zea mays]
Length = 415
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W +++ L+EYF +FG + A + D++TGR++GFGF+ F+ A + ++K
Sbjct: 17 LFVGGISWETSEDRLREYFGRFGEVTEAAIMRDRSTGRARGFGFVVFTDAAVAERVTMEK 76
Query: 166 HKIGNRICDVR----------IPESTKIGTEEPVAS---KVFVGSLTPDLTESDLREHFE 212
H I R+ + + + +S T P K+FVG L +TE+D R +FE
Sbjct: 77 HMIDGRMVEAKKAVPRDDHSIVSKSNGRSTGSPGPGRTRKIFVGGLPSSITEADFRRYFE 136
Query: 213 YYGAVVDVL---IPK 224
+G + DV+ +PK
Sbjct: 137 QFGVITDVVKKAVPK 151
>gi|403255345|ref|XP_003920400.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 12/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E AM +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + V +S + G V K+FVG + D E LR++FE YG V+
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+++ + R FAFVTF + DS+ K +I ++ + V +A K++M
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF 234
K+F+G L+ + T+ LR HFE +G + D ++ K R F FVT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
>gi|390474589|ref|XP_002757922.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Callithrix jacchus]
Length = 320
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQPRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
A+ + H + R+ + + S + ++ P A K+FVG + D E LR++FE Y
Sbjct: 70 AAVNARPHNVDGRVVEPKRAVSRE-DSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R+FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|148673673|gb|EDL05620.1| mCG50656 [Mus musculus]
Length = 271
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAVVDVLIPK-----PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + + + + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|387018108|gb|AFJ51172.1| Heterogeneous nuclear ribonucleoprotein A3-like [Crotalus
adamanteus]
Length = 225
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 12/190 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++G L V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGALTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMNERQDNRN 274
+M R+
Sbjct: 184 EMQTATAQRS 193
>gi|159163803|pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
gi|301598362|pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
++ + + G+ W T+++L+EYF ++GT+ + D TGRS+GFGF+ F S +
Sbjct: 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV 61
Query: 162 MLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-- 219
+ +H + ++ D P+ E+ K+FVG + PD+ + E F +G ++D
Sbjct: 62 VKTQHILDGKVID---PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ 118
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+++ K R F FVT++ D+V + + ++ KD+K+ + A P+
Sbjct: 119 LMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166
>gi|296194380|ref|XP_002744925.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E AM +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + V +S + G V K+FVG + D E LR++FE YG V
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRQGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVT 134
Query: 219 DVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+++ + R FAFVTF + D+V K +I ++ + V +A K++M
Sbjct: 135 EIMTDRGSGKKRSFAFVTFDDHDTVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQ 246
K+F+G L+ + T+ LR HFE +G + D ++ K R F FVT+ + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 247 HVNIKDKKVVVMEATPKKKMNERQ 270
+ D +VV + ++ ++RQ
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRQ 98
>gi|440908270|gb|ELR58311.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Bos grunniens
mutus]
Length = 315
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFG + +++ E
Sbjct: 9 PEQLWKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGLVTYATVEEVD 68
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 69 AAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 127
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 128 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 185
>gi|224129106|ref|XP_002320502.1| predicted protein [Populus trichocarpa]
gi|222861275|gb|EEE98817.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LK YF FG + A + D+ TGR++GFGF+ F+ A + + +K
Sbjct: 8 LFIGGISWDTDEERLKGYFRSFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEK 67
Query: 166 HKIGNRICDVR--IPE------------STKIGTEEPVASKVFVGSLTPDLTESDLREHF 211
H I R+ + + +P S K+FVG L +TE+D + +F
Sbjct: 68 HSIDGRMVEAKKAVPRDDQNILNRNSGGSIHSSPGPGRTKKIFVGGLASTVTENDFKNYF 127
Query: 212 EYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +G ++DV++ +P R F F+TF+ ++V K L+ + K V V A PK+
Sbjct: 128 DQFGTIIDVVVMYDHNTQRP-RGFGFITFDSEEAVDKVLMRTFHELNGKMVEVKRAVPKE 186
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T+ND K YF+QFGT+ V D NT R +GFGFI F S E+
Sbjct: 102 GPGRTKKIFVGGLASTVTENDFKNYFDQFGTIIDVVVMYDHNTQRPRGFGFITFDSEEAV 161
Query: 159 LKAMLKK-HKIGNRICDVR 176
K +++ H++ ++ +V+
Sbjct: 162 DKVLMRTFHELNGKMVEVK 180
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
+ K+F+G ++ D E L+ +F +G VV+ +I K R F FV F +VA+ +I
Sbjct: 5 SGKLFIGGISWDTDEERLKGYFRSFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVI 64
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
+ +I + V +A P+ N
Sbjct: 65 KEKHSIDGRMVEAKKAVPRDDQN 87
>gi|429892786|gb|AGA18938.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 418
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 6 LFVYGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 65
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 66 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 121
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 122 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 171
>gi|225460779|ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera]
Length = 478
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ LKEYF +G + A + D+ TGR++GFGF+ F+ A + ++ K
Sbjct: 8 LFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVVMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P + G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ + + ++ + + + K V V A PK+
Sbjct: 128 QFGTINDVVVMYDHNTQRP-RGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKE 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 ERVLHKTFHELNGKMVEVK 179
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG VV+ +I + R F FV F +VA+ ++
Sbjct: 7 KLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVVMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHMIDGRTVEAKKAVPR 83
>gi|410899428|ref|XP_003963199.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Takifugu rubripes]
Length = 291
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D N+ RS+GFGF+ +SS +
Sbjct: 9 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVDEVD 68
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D ES +R++FE +
Sbjct: 69 LAMTARPHKVDGRVVEPKRAVSREDSNRPGAHVTV-KKIFVGGIKEDTEESHIRDYFERF 127
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G ++D++ + R FAFVTF + D V + +I ++ I V +A +++M
Sbjct: 128 GKIEIIDIITDRNSGKKRGFAFVTFDDHDPVDRIVIQKYHTINSHNCEVRKALTRQEM 185
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIG 245
K+F+G L+ + T+ LR HFE +G + D ++ K R F FVT+ +D V ++
Sbjct: 14 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVDEVDLAMTA 73
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNR 273
+ + D +VV PK+ ++ NR
Sbjct: 74 RPHKV-DGRVV----EPKRAVSREDSNR 96
>gi|397467692|ref|XP_003805542.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pan paniscus]
Length = 326
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + +D L+ + EQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+G R+ + + S + ++ P A K+FVG + D E LR+++E Y
Sbjct: 70 AAMNARPHKMGGRVVEPKTAVS-REDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R+FAFVTF+ DS K +I ++ + V +A K+KM
Sbjct: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKM 186
>gi|296083709|emb|CBI23698.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W +++ LKEYF +G + A V DK TGR +GFGF+ F+ + + +K
Sbjct: 8 LFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEK 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVAS--------------------KVFVGSLTPDLTES 205
H I R + + S + E+ +S K+FVG L P L+E
Sbjct: 68 HIIDGRTVEAKRALSRE---EQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEE 124
Query: 206 DLREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVM 258
R++FE +G V DV++ +P R F FV+F+ D+V + L ++ K+V V
Sbjct: 125 GFRQYFEAFGHVTDVVVMYDQSTQRP-RGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVK 183
Query: 259 EATPK 263
A PK
Sbjct: 184 RALPK 188
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
G V+ + V G+P T ++ ++YFE FG + V D++T R +GFGF+ F + +
Sbjct: 103 GGGNVKTKKIFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTED 162
Query: 157 SALKAMLKK-HKIGNRICDVR 176
+ + + K H + + +V+
Sbjct: 163 AVDRVLYKTFHDLNGKQVEVK 183
>gi|71999554|ref|NP_001023574.1| Protein SQD-1, isoform b [Caenorhabditis elegans]
gi|351059313|emb|CCD74156.1| Protein SQD-1, isoform b [Caenorhabditis elegans]
Length = 308
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N +A+++ + ++ ++ + V GI + DL +F Q+G + A VK D+ GR
Sbjct: 9 NGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGR 68
Query: 144 SKGFGFIRFSSHESALKAMLKKHK-IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
S+GF F+ F++ E A+ + + I + +V+ +S + KVFVG L D
Sbjct: 69 SRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE-------NKKVFVGGLPSDY 121
Query: 203 TESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256
+E DLR HFE +G V D+ P K R FAF+ FE + A Q ++
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 257 VMEATPKKK 265
V +A P+ K
Sbjct: 182 VKKAVPQGK 190
>gi|365982363|ref|XP_003668015.1| hypothetical protein NDAI_0A06170 [Naumovozyma dairenensis CBS 421]
gi|343766781|emb|CCD22772.1| hypothetical protein NDAI_0A06170 [Naumovozyma dairenensis CBS 421]
Length = 552
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ W T+ LK+YF ++G + + D N+GRS+GFGF+ F S + + +
Sbjct: 231 LFIGGLNWETTEEKLKDYFSKYGNVVDLKIMKDANSGRSRGFGFLSFEHPSSVDEVVKSQ 290
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + ++ D + IP E+ K+FVG + PD+ + E F +G ++D ++
Sbjct: 291 HILDGKVIDPKRAIPRE-----EQDKTGKIFVGGIGPDVRPKEFEEFFAQWGTIIDAQLM 345
Query: 222 IPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
+ K R F F+T++ ++V + +++ KDK++ + A P+
Sbjct: 346 LDKDTGRSRGFGFITYDSGEAVDRVCQNKYIQFKDKQIEIKRAAPR 391
>gi|356576454|ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
Length = 476
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 27/184 (14%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W T++ LKE+F +G + +V +KNTG+ +GFGF+ F+ + + K
Sbjct: 8 LFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDK 67
Query: 166 HKIGNRICDVR---------IPESTKIGTEEPV----------ASKVFVGSLTPDLTESD 206
H I R D + I +++ G K+FVG L P LTE
Sbjct: 68 HVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSENGGNIRTKKIFVGGLPPTLTEEK 127
Query: 207 LREHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVME 259
R +FE YG V DV++ +P R F F++F+ ++V + L ++ K+V V
Sbjct: 128 FRLYFESYGHVTDVVVMYDQNTGRP-RGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKR 186
Query: 260 ATPK 263
A PK
Sbjct: 187 ALPK 190
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+N G ++ + V G+P T T+ + YFE +G + V D+NTGR +GFGFI F +
Sbjct: 104 ENGGNIRTKKIFVGGLPPTLTEEKFRLYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTE 163
Query: 156 ESALKAMLKK-HKIGNRICDVR 176
E+ + + K H + + +V+
Sbjct: 164 EAVDRVLHKSFHDLNGKQVEVK 185
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIG 245
K+F+G ++ D TE L+EHF YG V+ + KP R F FV F ++ +
Sbjct: 7 KLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKP-RGFGFVVFADPNILDRV-- 63
Query: 246 QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPM 287
++DK V+ KK R+D + + R S S M
Sbjct: 64 ----LEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGM 101
>gi|147783406|emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]
Length = 482
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ LKEYF +G + A + D+ TGR++GFGF+ F+ A + ++ K
Sbjct: 8 LFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVVMDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P + G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ + + ++ + + + K V V A PK+
Sbjct: 128 QFGTINDVVVMYDHNTQRP-RGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKE 185
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 ERVLHKTFHELNGKMVEVK 179
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG VV+ +I + R F FV F +VA+ ++
Sbjct: 7 KLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVVMD 66
Query: 247 HVNIKDKKVVVMEATPK 263
I + V +A P+
Sbjct: 67 KHMIDGRTVEAKKAVPR 83
>gi|332837971|ref|XP_001142796.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 4 [Pan troglodytes]
Length = 326
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + +D L+ + EQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+G R+ + + S + ++ P A K+FVG + D E LR+++E Y
Sbjct: 70 AAMNARPHKMGGRVVEPKTAVS-REDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
Query: 215 G--AVVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R+FAFVTF+ DS K +I ++ + V +A K+KM
Sbjct: 129 GNTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKM 186
>gi|148235301|ref|NP_001084608.1| heterogeneous nuclear ribonucleoprotein D-like-B [Xenopus laevis]
gi|82237179|sp|Q6NU14.1|HNDLB_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-B;
Short=hnRNP D-like B; Short=hnRNP DL-B
gi|46249880|gb|AAH68788.1| MGC81335 protein [Xenopus laevis]
Length = 291
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM- 162
+ + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
K+HK+ ++ D + ++ + G E P KVFVG L+P+ TE ++++F +G + ++ +
Sbjct: 94 TKEHKLDGKLIDPKRAKALQ-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIEL 150
Query: 223 P-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
P R F FVT+ + + V K L + I K + A PK+
Sbjct: 151 PMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 150 IRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLRE 209
I S+ S L +L++HK N P+ I SK+F+G L+ D ++ DL E
Sbjct: 6 ITRSTLVSTLSRLLRRHKESN-------PDFFLI------RSKMFIGGLSWDTSKKDLTE 52
Query: 210 HFEYYGAVVDVLIPK-PF----REFAFVTFE--------LDSVAKSLIGQHVNIKDKKVV 256
+ +G V+D I P R F FV F+ L++ L G+ ++ K K +
Sbjct: 53 YLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKAL 112
Query: 257 VMEATPKK 264
+ PKK
Sbjct: 113 QGKEPPKK 120
>gi|254579563|ref|XP_002495767.1| ZYRO0C02574p [Zygosaccharomyces rouxii]
gi|238938658|emb|CAR26834.1| ZYRO0C02574p [Zygosaccharomyces rouxii]
Length = 543
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T++ L++YF ++G + + D NTGRS+GFGF+ F S S + + +
Sbjct: 161 MFIGGLNWETTEDTLRDYFSKYGRVIDLKIMKDTNTGRSRGFGFLTFDSSSSVDEVVKTQ 220
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + ++ D + IP E+ K+FVG + D+ + E F +G ++D ++
Sbjct: 221 HILDGKVIDPKRAIPRE-----EQDKTGKIFVGGIGADVRPKEFEEFFAQWGTIIDAQLM 275
Query: 222 IPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ K R F FVT++ D+V + + ++ K KK+ + A P+ ++Q
Sbjct: 276 LDKDTGRSRGFGFVTYDSPDAVDRVCQNKFIDFKGKKIEIKRAEPRHMQKQQQ 328
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLI-G 245
K+F+G L + TE LR++F YG V+D+ I K R F F+TF+ S ++
Sbjct: 160 KMFIGGLNWETTEDTLRDYFSKYGRVIDLKIMKDTNTGRSRGFGFLTFDSSSSVDEVVKT 219
Query: 246 QHVNIKDKKVVVMEATPKKKM-NERQD 271
QH I D KV+ PK+ + E QD
Sbjct: 220 QH--ILDGKVI----DPKRAIPREEQD 240
>gi|296209042|ref|XP_002751365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Callithrix jacchus]
Length = 375
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ + EQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHSEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDNEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|291401095|ref|XP_002716927.1| PREDICTED: mCG1035404-like isoform 1 [Oryctolagus cuniculus]
Length = 377
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRAVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>gi|307206491|gb|EFN84517.1| RNA-binding protein squid [Harpegnathos saltator]
Length = 311
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ TD +L+E+F +FG +E VK+D +TG S+GF F+ F++ ++ K +
Sbjct: 79 LFVGGLSRNTTDKELREHFSKFGEIESITVKIDPHTGISRGFAFMVFANAKAIDKLLASG 138
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I R D K +++P K+FVG LTP++T+ D++ +F YG +V++ P
Sbjct: 139 EHYINKRKVD------PKRVSKKPQHGKIFVGGLTPEITDDDIKTYFGQYGTIVELQAPF 192
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
+ F F+TF+ V L+
Sbjct: 193 DKVKNQRKGFCFITFDSKEVVYKLL 217
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q+ + V G+ TD+D+K YF Q+GT+ DK + KGF FI F S E K
Sbjct: 157 QHGKIFVGGLTPEITDDDIKTYFGQYGTIVELQAPFDKVKNQRKGFCFITFDSKEVVYKL 216
Query: 162 M 162
+
Sbjct: 217 L 217
>gi|296188846|ref|XP_002742529.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKPFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K+++
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEL 186
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTF----ELDSVAKS 242
K F+G L+ + T+ LR HFE +G + D ++ K R F FVT+ E+D+
Sbjct: 15 KPFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVDAA--- 71
Query: 243 LIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
+N + KV PK+ ++ R
Sbjct: 72 -----MNARPHKVDGRVVEPKRAVSREDSQR 97
>gi|41053816|ref|NP_956789.1| heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
gi|33416839|gb|AAH55499.1| Zgc:66127 [Danio rerio]
Length = 388
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +SS
Sbjct: 11 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVD 70
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R + V +S+K G V K+FVG + D E LRE+F +
Sbjct: 71 AAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTV-KKMFVGGIKEDTDEEHLREYFGQF 129
Query: 215 GAV--VDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + V+++ K R FAF+TF + D+V + +I ++ + V +A ++ MN
Sbjct: 130 GKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREGMN 188
>gi|367007988|ref|XP_003688723.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
gi|357527033|emb|CCE66289.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
Length = 518
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W T++ L++YF ++G++ + D NTGRS+GFGF+ F + S + + +
Sbjct: 166 MFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFGFLTFENASSVDEVVKTQ 225
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VL 221
H + ++ D + IP E+ K+FVG + D+ + E F YG ++D ++
Sbjct: 226 HILDGKVIDPKRAIPRE-----EQDKTGKIFVGGIGADVRPKEFEEFFAQYGTIIDAQLM 280
Query: 222 IPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
+ K R F FVT++ D+V + +++ K K++ + A P+
Sbjct: 281 LDKDTGRSRGFGFVTYDSPDAVDRVCQSKYIEFKGKQIEIKRAEPR 326
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFE-LDSVAKSL 243
+ K+F+G L + TE LR++F YG+VV++ I K R F F+TFE SV + +
Sbjct: 163 SCKMFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFGFLTFENASSVDEVV 222
Query: 244 IGQHVNIKDKKVV 256
QH I D KV+
Sbjct: 223 KTQH--ILDGKVI 233
>gi|390465683|ref|XP_003733453.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Callithrix jacchus]
Length = 320
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E AM +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLIDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + V +S + G V K+FVG + D E LR++FE YG V
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVT 134
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|422296095|gb|EKU23394.1| RNA-binding protein Musashi, partial [Nannochloropsis gaditana
CCMP526]
Length = 240
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + V G+ W T+ L YF ++G L + DKNTG +GFGF+ F++ + A
Sbjct: 43 QPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAA 102
Query: 162 MLKKHKIGNRICDVR--IPE------------STKIGTEEPV--ASKVFVGSLTPDLTES 205
+ + H + R DV+ +P T G + KVFVG L+PD+TE
Sbjct: 103 VSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEE 162
Query: 206 DLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEA 260
R +F+ +G + D ++ R F FVT+ ++ K ++ Q +++ + + V A
Sbjct: 163 AFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRA 222
Query: 261 TPK 263
PK
Sbjct: 223 EPK 225
>gi|429892776|gb|AGA18933.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|429892784|gb|AGA18937.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 8 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 67
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 68 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 123
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 124 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 173
>gi|357459939|ref|XP_003600251.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355489299|gb|AES70502.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 481
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LKEYF +G + A + D+ TGR++GFGF+ FS A + ++ K
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R + + +P + G+ P + K+FVG L +TESD + +F+
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V + L + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+P T T++D K YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR--IPESTKIG-TEEPV 189
+ + K H++ ++ +V+ +P+ G T P+
Sbjct: 161 DRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPL 195
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG V++ +I + R F FV F +VA+ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV--- 63
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRN 274
I DK ++ KK R D +N
Sbjct: 64 ---IIDKHIIDGRTVEAKKAVPRDDQQN 88
>gi|429892780|gb|AGA18935.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|429892774|gb|AGA18932.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 417
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 5 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 64
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 65 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 120
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 121 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 170
>gi|429892772|gb|AGA18931.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 8 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 67
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 68 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 123
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 124 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 173
>gi|409049501|gb|EKM58978.1| hypothetical protein PHACADRAFT_249120 [Phanerochaete carnosa
HHB-10118-sp]
Length = 338
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ + G+ W TD L++YF QFG +E + D GRS+ F F+ F S M+++
Sbjct: 1 MFIGGLNWDTTDESLRKYFSQFGKVEACTIMRDA-AGRSRCFAFLTFEDPASVNAVMVRE 59
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIP 223
H + +I D P+ E A+K+F+G L +T +RE F +G VVD V++
Sbjct: 60 HFLDGKIID---PKRAIPRQEHQRATKLFIGGLAGSVTSESMREFFSQFGKVVDATVMLD 116
Query: 224 KPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKK-----MNERQDNRNN 275
+ + F FV+FE +V L ++ I K + V A P+ + + Q+NR N
Sbjct: 117 RETGRSKGFGFVSFENANVEPLLGFGNLEIDGKIIDVKLAQPRSQREGGFTQDGQNNRGN 176
Query: 276 FDRRN 280
F+ N
Sbjct: 177 FNATN 181
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T L + G+ + T ++E+F QFG + A V +D+ TGRSKGFGF+ F +
Sbjct: 82 TKLFIGGLAGSVTSESMREFFSQFGKVVDATVMLDRETGRSKGFGFVSFENANVEPLLGF 141
Query: 164 KKHKIGNRICDVRI--PESTKIG 184
+I +I DV++ P S + G
Sbjct: 142 GNLEIDGKIIDVKLAQPRSQREG 164
>gi|296209046|ref|XP_002751367.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Callithrix jacchus]
Length = 320
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ + EQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHSEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDNEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|17136728|ref|NP_476869.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|24582366|ref|NP_723228.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|24582368|ref|NP_723229.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|281364530|ref|NP_001162897.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|281364532|ref|NP_001162898.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|386769237|ref|NP_001245917.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|386769239|ref|NP_001245918.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|386769241|ref|NP_001245919.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
gi|76803817|sp|P48809.2|RB27C_DROME RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C;
Short=Hrb27-C; AltName: Full=HRP48.1; AltName:
Full=hnRNP 48
gi|7297190|gb|AAF52456.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|7297191|gb|AAF52457.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|17862734|gb|AAL39844.1| LD46853p [Drosophila melanogaster]
gi|21711665|gb|AAM75023.1| GH26816p [Drosophila melanogaster]
gi|22945819|gb|AAN10605.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|66804007|gb|AAY56657.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
gi|272406922|gb|ACZ94188.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|272406923|gb|ACZ94189.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|383291369|gb|AFH03591.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|383291370|gb|AFH03592.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|383291371|gb|AFH03593.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
Length = 421
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|429892778|gb|AGA18934.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQDN 272
V+I K R F F++FE +S + + + ++N+ K+V + +A P+ + N
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSN 183
>gi|308490851|ref|XP_003107617.1| CRE-MSI-1 protein [Caenorhabditis remanei]
gi|308250486|gb|EFO94438.1| CRE-MSI-1 protein [Caenorhabditis remanei]
Length = 335
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 14/206 (6%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
D G+ A + S + G + + G+ W T +L++YF +FG + V D
Sbjct: 17 DVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDP 76
Query: 140 NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICD--VRIPEST--KIGTEEPVASKVF 194
T R++GFGFI F S K + ++H++ + D V P+ T K+ T+ KVF
Sbjct: 77 ATKRARGFGFITFVDPSSVDKVLNAREHELDGKKIDPKVAFPKRTQAKLVTK---TKKVF 133
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN 249
+G L+ T DL+++FE YG V D ++ + R F FVTF+ D VA + H +
Sbjct: 134 IGGLSATSTLEDLKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCEIHFH 193
Query: 250 -IKDKKVVVMEATPKKKMNERQDNRN 274
I K V +A PK+ M Q N++
Sbjct: 194 EINGKMVECKKAQPKEVMLPVQLNKS 219
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ T T DLK+YFE +G +E A + DK T R +GFGF+ F S E A K +
Sbjct: 132 VFIGGLSATSTLEDLKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCEIH 191
Query: 165 KHKIGNRICDVR------IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
H+I ++ + + + ++ A++ G P T ++ +G
Sbjct: 192 FHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYG--MPPETLLAYAQYLPRFGG-- 247
Query: 219 DVLIPKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
+++ P F FVTF+ D VA + H + I K V +A PK+
Sbjct: 248 NLMYPGFGNGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKE 294
>gi|157831273|pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
G V++++ + R FAFVTF + DSV K +I ++ + V +A K+
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>gi|289739881|gb|ADD18688.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 422
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVQHVLQSG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|157834095|pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 8 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 67
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 68 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 126
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
G V++++ + R FAFVTF + DSV K +I ++ + V +A K+
Sbjct: 127 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 182
>gi|187607268|ref|NP_001120028.1| heterogeneous nuclear ribonucleoprotein A3 [Xenopus (Silurana)
tropicalis]
gi|165971520|gb|AAI58334.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
gi|170284841|gb|AAI61197.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
Length = 383
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FEQ+G L V D T RS+GFGF+ +S E
Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 82
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++F+ Y
Sbjct: 83 AAMSARPHKVDGRVVEPKRAVSREDSARPGAHLTV-KKIFVGGIKEDTEEYHLRDYFQSY 141
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 200
>gi|156548706|ref|XP_001603011.1| PREDICTED: RNA-binding protein squid-like [Nasonia vitripennis]
Length = 310
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ T+ +LK YF +FG +E ++K+D TG S+GF F+ F + ++ K +
Sbjct: 75 LFVGGLTRNTTEAELKAYFGKFGEIESVSIKMDPYTGVSRGFAFMVFQNPKAIDKLLASG 134
Query: 165 KHKIGNRICDV-RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H + R D R+ + + G K+FVG LTPD+T+ D++ +F YG +V+V P
Sbjct: 135 DHYVNKRKVDPKRVSKKAQHG-------KIFVGGLTPDITDEDIKTYFGQYGTIVEVQAP 187
Query: 224 -----KPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
R + FVTF+ V L+ K+V+ + KK+ QD R F
Sbjct: 188 FDKTKNQRRSYCFVTFDSKDVVYKLL-----KTPKQVINGKEIDVKKVKVNQDQRQGF 240
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
ASG+ + K S Q+ + V G+ TD D+K YF Q+GT+ DK
Sbjct: 132 ASGDHYVNKRKVDPKRVSKKAQHGKIFVGGLTPDITDEDIKTYFGQYGTIVEVQAPFDKT 191
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
+ + + F+ F S + K + K I + DV+
Sbjct: 192 KNQRRSYCFVTFDSKDVVYKLLKTPKQVINGKEIDVK 228
>gi|209156106|gb|ACI34285.1| DAZ-associated protein 1 [Salmo salar]
Length = 436
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 31/235 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-- 163
L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F + ++ +L
Sbjct: 13 LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVRTVLET 71
Query: 164 KKHKIGNR-----ICDVRIPESTKIGTEEPV---------ASKVFVGSLTPDLTESDLRE 209
K H + R C R + K+ T++ + K+FVG + + E +LRE
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKVRTKDGWKGSKADSNKSKKIFVGGIPHNCGEPELRE 131
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATP 262
+F +G V +V++ +P R F F+TFE + + H +I KKV V +A P
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRP-RGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEP 190
Query: 263 KKKMNERQDNRNNFDRR------NDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYN 311
+ Q N + R N S P +Q G G + + Q GGY
Sbjct: 191 RDSNAPGQLGPNQWGPRGILSAANGWSAQPAQGWQQSYGPPGVWVSTGQPLGGYG 245
>gi|328711026|ref|XP_001943905.2| PREDICTED: hypothetical protein LOC100169433 [Acyrthosiphon pisum]
Length = 530
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S+ + S RS P++S + L V G+ W + + LK+YF FG + + D T RS
Sbjct: 199 SAPSPSGRSTPNSSTEGTSAKLFVGGLSWQTSADKLKQYFGMFGDVTNVLIMKDPITQRS 258
Query: 145 KGFGFIRFSSHESALKAM-LKKHKIGNRICDVR--IPES-TKIGTEEPVASKVFVGSLTP 200
+GFGFI FS E+ K + + H + + D + P++ K G++ K+FVG ++
Sbjct: 259 RGFGFITFSDAETVEKVLAVPIHTLDGKKIDPKHATPKNRPKAGSK---TKKIFVGGVSQ 315
Query: 201 DLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKK 254
D T +++ +F +G V + ++ K R F FVTFE D + ++ H + IK+KK
Sbjct: 316 DTTADEVKAYFSQFGKVEETVMLMDQHTKRHRGFGFVTFENDDIVDTICEIHFHTIKNKK 375
Query: 255 VVVMEATPKK 264
V +A PK+
Sbjct: 376 VECKKAQPKE 385
>gi|429892782|gb|AGA18936.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 8 LFVDGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 67
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 68 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 123
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 124 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 173
>gi|402887374|ref|XP_003907069.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Papio anubis]
gi|402887376|ref|XP_003907070.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Papio anubis]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + D L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PKQLRKLFIGGLSFETIDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKTAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V +++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVNEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|348519655|ref|XP_003447345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Oreochromis niloticus]
Length = 335
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GTL V D N+ RS+GFGF+ +SS
Sbjct: 9 PEQLRKLFIGGLSFETTEESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVREVD 68
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +RE+FE Y
Sbjct: 69 DAMKARPHKVDGRVVEPKRAVSREDSNKPGAHLTV-KKIFVGGIKEDTEEYHIREYFEKY 127
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G + +D++ + R F FVTF + D+V K + + I V +A K++M+
Sbjct: 128 GKIECIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKFHTINFHNCEVRKALSKQEMSA 187
Query: 269 RQDNR 273
+NR
Sbjct: 188 ISNNR 192
>gi|119923161|ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2
isoform 2 [Bos taurus]
gi|297471765|ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Bos
taurus]
gi|296490543|tpg|DAA32656.1| TPA: heterogeneous nuclear ribonucleoprotein A1-like [Bos taurus]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + D L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKALSKQEM 186
>gi|11042|emb|CAA44505.1| hrp48.1 [Drosophila melanogaster]
Length = 385
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|194760296|ref|XP_001962377.1| GF15435 [Drosophila ananassae]
gi|190616074|gb|EDV31598.1| GF15435 [Drosophila ananassae]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQDN 272
V+I K R F F++FE +S + + + ++N+ K+V + +A P+ + N
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSN 183
>gi|21553963|gb|AAM63044.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 431
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W +++ L++YF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 161 AMLKKHKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+L KH I +I + + +P S+ G+ P S K+FVG L +TE++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+++F +G + DV++ +P R F F++++ ++V K L + K V V A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 261 TPKKKMNERQDNRNNFD 277
PK N+ N +
Sbjct: 182 VPKDMALNTMRNQMNVN 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
+S S + GP + + V G+ + T+ + K+YF QFG + V D T R +GFG
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 149 FIRFSSHESALKAMLKK-HKIGNRICDVRI 177
FI + S E+ K + K H++ ++ +V++
Sbjct: 151 FISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
>gi|195338791|ref|XP_002036007.1| GM16252 [Drosophila sechellia]
gi|195577167|ref|XP_002078444.1| Hrb27C [Drosophila simulans]
gi|194129887|gb|EDW51930.1| GM16252 [Drosophila sechellia]
gi|194190453|gb|EDX04029.1| Hrb27C [Drosophila simulans]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|194862724|ref|XP_001970091.1| GG10443 [Drosophila erecta]
gi|195471631|ref|XP_002088106.1| GE14209 [Drosophila yakuba]
gi|190661958|gb|EDV59150.1| GG10443 [Drosophila erecta]
gi|194174207|gb|EDW87818.1| GE14209 [Drosophila yakuba]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|444520816|gb|ELV13038.1| Heterogeneous nuclear ribonucleoprotein A1 [Tupaia chinensis]
Length = 205
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GF F+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFRFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPK---PFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>gi|302769522|ref|XP_002968180.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
gi|300163824|gb|EFJ30434.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
Length = 296
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T DL+E FEQFG +E V +DK TG+S+GFGFI F +SA +A+ +
Sbjct: 35 LFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEP 94
Query: 166 HK-IGNRI--CDV-RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
K I RI C++ + S GT + K+++G L+ + + L F YG + +
Sbjct: 95 SKTIDGRITVCNLASVGTSGSGGTNDQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGA 154
Query: 222 IP-----KPFREFAFVTFE--------LDSVAKSLIGQHVNIK 251
+ R FAFVT++ +D K++ G+HV +K
Sbjct: 155 VAYDKNTNKSRGFAFVTYKTVEAARNAIDDPNKTIEGRHVIVK 197
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE- 235
++ +++P K+FV L + T DLRE FE +G + + V+I K R F F+TF+
Sbjct: 24 EVASKDPAHRKLFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKH 83
Query: 236 LDSVAKSL 243
+DS ++L
Sbjct: 84 MDSAQRAL 91
>gi|125984017|ref|XP_001355773.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
gi|54644090|gb|EAL32832.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|195387610|ref|XP_002052487.1| GJ21323 [Drosophila virilis]
gi|194148944|gb|EDW64642.1| GJ21323 [Drosophila virilis]
Length = 421
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVNHVLQSG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQDN 272
V+I K R F F++FE +S + + + ++N+ K+V + +A P+ + N
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSN 183
>gi|195438186|ref|XP_002067018.1| GK24781 [Drosophila willistoni]
gi|194163103|gb|EDW78004.1| GK24781 [Drosophila willistoni]
Length = 422
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKMNERQDN 272
V+I K R F F++FE +S + + + ++N+ K+V + +A P+ + N
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSN 183
>gi|18422817|ref|NP_568685.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|30695248|ref|NP_851149.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17528972|gb|AAL38696.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|23297042|gb|AAN13229.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332008155|gb|AED95538.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332008156|gb|AED95539.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 431
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W +++ L++YF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 161 AMLKKHKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+L KH I +I + + +P S+ G+ P S K+FVG L +TE++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+++F +G + DV++ +P R F F++++ ++V K L + K V V A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 261 TPKKKMNERQDNRNNFD 277
PK N+ N +
Sbjct: 182 VPKDMALNTMRNQMNVN 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
+S S + GP + + V G+ + T+ + K+YF QFG + V D T R +GFG
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 149 FIRFSSHESALKAMLKK-HKIGNRICDVRI 177
FI + S E+ K + K H++ ++ +V++
Sbjct: 151 FISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
>gi|66804019|gb|AAY56658.1| heterogeneous nuclear ribonucleoprotein [Drosophila simulans]
Length = 421
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFGRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>gi|322783285|gb|EFZ10869.1| hypothetical protein SINV_13887 [Solenopsis invicta]
Length = 298
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L + G+ TD +L+++F +FG +E +VKVD +TG S+GF F+ F++ ++ K +
Sbjct: 67 LFIGGLSRNTTDKELRDHFGKFGEIESISVKVDPHTGVSRGFAFMVFTNPKTIDKLLASG 126
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I R D K +++P K+FVG LTP++T+ D++ +F YG +V++ P
Sbjct: 127 EHYINKRKVD------PKRVSKKPQHGKIFVGGLTPEITDDDIKSYFSQYGTIVELQAPF 180
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
+ F F+TF+ V L+
Sbjct: 181 DKVKNQRKGFCFITFDSKEVVYKLL 205
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q+ + V G+ TD+D+K YF Q+GT+ DK + KGF FI F S E K
Sbjct: 145 QHGKIFVGGLTPEITDDDIKSYFSQYGTIVELQAPFDKVKNQRKGFCFITFDSKEVVYKL 204
Query: 162 M 162
+
Sbjct: 205 L 205
>gi|413954078|gb|AFW86727.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 278
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 12/176 (6%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+A GN A D+SG + + V G+ W T+ ++F+++G + + + DK
Sbjct: 69 EAVGNVDAGGEDERDADSSGGDASGKVFVGGVAWETTEETFTKHFQKYGAITDSVIMKDK 128
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPE--STKIGTEEPVASKVFV 195
+T +GFGF+ FS + + +H I R +V+ +P+ S+K G P K+FV
Sbjct: 129 HTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKELSSKDG---PKTKKIFV 185
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQ 246
G + P LTE L+EHF YG VV+ I R F FVTFE + + ++ +
Sbjct: 186 GGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSE 241
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 89 QSKRSYP----DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ KR+ P GP + + V GIP + T++ LKE+F +G + + +D +TGRS
Sbjct: 163 EVKRTVPKELSSKDGP-KTKKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRS 221
Query: 145 KGFGFIRFSSHESALKAML--KKHKIGNR 171
+GFGF+ F S ++ + M + H +G +
Sbjct: 222 RGFGFVTFESEDAVERVMSEGRMHDLGGK 250
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK------PFREFAFVTFELDSVAKSL 243
+ KVFVG + + TE +HF+ YGA+ D +I K P R F FVTF SV +
Sbjct: 92 SGKVFVGGVAWETTEETFTKHFQKYGAITDSVIMKDKHTRMP-RGFGFVTFSDPSVLDRV 150
Query: 244 IGQHVNIKDKKVVVMEATPKK 264
+ I + V V PK+
Sbjct: 151 LEDEHVIDGRTVEVKRTVPKE 171
>gi|12847801|dbj|BAB27715.1| unnamed protein product [Mus musculus]
Length = 148
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELP 146
>gi|213513508|ref|NP_001134615.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
gi|209734656|gb|ACI68197.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+G L + V D N RS+GFGF+ +S E
Sbjct: 9 PEQLRKLFIGGLSFETTEESLRIHFEQWGNLTDSVVMRDPNNKRSRGFGFVTYSCVEEVD 68
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
M + HK+ R+ + V +S + G V K+FVG + D E +RE+FE Y
Sbjct: 69 ACMAARPHKVDGRVVEPKRAVSREDSNRPGAHLTV-KKIFVGGIKEDTREDHIREYFETY 127
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G + +D++ + R F FV+F + D+V K + ++ I V +A PK++M
Sbjct: 128 GRIETIDIMEERATGKKRGFCFVSFDDNDTVDKIVAQKYHTINSHNCEVRKALPKQEME- 186
Query: 269 RQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYY 300
SN R GGG+G +
Sbjct: 187 ------------------ASNQRNRGGGSGNF 200
>gi|357124085|ref|XP_003563737.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 1 [Brachypodium distachyon]
Length = 410
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W T+ ++F+++G + + + DK+T +GFGF+ FS + + +
Sbjct: 85 IFVGGVAWETTEETFSKHFQKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDRVLEDE 144
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H I R +V+ +P + P K+FVG + LTE L+EHF YG V + I
Sbjct: 145 HTIDGRTVEVKRTVPREEMSTKDGPKTRKIFVGGIPTSLTEGKLKEHFSSYGKVEEHQIM 204
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKK 264
R F FVTFE + + ++ G+ ++ K+V + A PKK
Sbjct: 205 VDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKRAEPKK 252
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-- 163
+ V GIP + T+ LKE+F +G +E + VD +TGRS+GFGF+ F S ++ + M
Sbjct: 174 IFVGGIPTSLTEGKLKEHFSSYGKVEEHQIMVDHSTGRSRGFGFVTFESEDAVERVMSEG 233
Query: 164 KKHKIGNRICDVRIPESTKIG 184
+ H +G + +++ E K G
Sbjct: 234 RMHDLGGKQVEIKRAEPKKPG 254
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLI 244
+ K+FVG + + TE +HF+ YGA+ D +I K R F FVTF SV ++
Sbjct: 82 SGKIFVGGVAWETTEETFSKHFQKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDRVL 141
Query: 245 GQHVNIKDKKVVVMEATPKKKMNER 269
I + V V P+++M+ +
Sbjct: 142 EDEHTIDGRTVEVKRTVPREEMSTK 166
>gi|255574661|ref|XP_002528240.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532357|gb|EEF34155.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 456
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W ++ L+EYF+ FG + A + D+ TGR++GFGF+ F+ A + +++K
Sbjct: 8 LFIGGISWDTNEDRLREYFQVFGEVMEAVIMKDRATGRARGFGFVVFADPAVAERVVMEK 67
Query: 166 HKIGNRICDVR--IPESTK-----------IGTEEPVAS-KVFVGSLTPDLTESDLREHF 211
H I R + + +P + G+ P + K+FVG L +TESD +++F
Sbjct: 68 HLIDGRNVEAKKAVPREDQNILNRNSSSSIHGSPSPARTKKIFVGGLASTVTESDFKKYF 127
Query: 212 EYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ +G + DV++ +P R F F+T++ ++V K L + K V V A PK+
Sbjct: 128 DQFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRAVPKE 186
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 103 PARTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 162
Query: 160 KAMLKK-HKIGNRICDVR 176
K + K H++ ++ +V+
Sbjct: 163 KVLHKTFHELNGKMVEVK 180
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E LRE+F+ +G V++ +I K R F FV F +VA+ ++ +
Sbjct: 7 KLFIGGISWDTNEDRLREYFQVFGEVMEAVIMKDRATGRARGFGFVVFADPAVAERVVME 66
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
I + V +A P++ N
Sbjct: 67 KHLIDGRNVEAKKAVPREDQN 87
>gi|56753309|gb|AAW24858.1| SJCHGC06087 protein [Schistosoma japonicum]
gi|226469806|emb|CAX70184.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 390
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W ++DLKEYF ++G + +K+D+ TG S+GFGF+ S + K + +
Sbjct: 61 LFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSVS 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + N+ D P+ K + EP+ K+FVG + P++TE +RE+F +G V + +P
Sbjct: 121 EHWLKNKKID---PKKAKP-SREPL-RKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPY 175
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ 246
+ + FV+F ++ A+ I +
Sbjct: 176 DTQKGKRKHYIFVSFSTEAAARKAISK 202
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
+ V GI T++ ++EYF FG +E ++ D G+ K + F+ FS+ +A KA+ K
Sbjct: 144 IFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAISKE 203
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
+ +I R CDVR+ + VA K + P
Sbjct: 204 RQEIFGRQCDVRVAVTRDQANRHKVALKQWYNWFDP 239
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFEL-DSVAKSLIG 245
K+FVG L+ + ESDL+E+F +G V +I R F FVT E D V+K L
Sbjct: 60 KLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSV 119
Query: 246 QHVNIKDKKVVVMEATPKKK 265
+K+KK+ +A P ++
Sbjct: 120 SEHWLKNKKIDPKKAKPSRE 139
>gi|9758790|dbj|BAB09088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 404
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 21/183 (11%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++ L + GI W +++ L++YF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 161 AMLKKHKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDL 207
+L KH I +I + + +P S+ G+ P S K+FVG L +TE++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 208 REHFEYYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEA 260
+++F +G + DV++ +P R F F++++ ++V K L + K V V A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 261 TPK 263
PK
Sbjct: 182 VPK 184
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
+S S + GP + + V G+ + T+ + K+YF QFG + V D T R +GFG
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 149 FIRFSSHESALKAMLKK-HKIGNRICDVRI 177
FI + S E+ K + K H++ ++ +V++
Sbjct: 151 FISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+P T+ D ++F Q+G + + + DK+T + +GFGFI +S+ + M
Sbjct: 25 IFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDDI 84
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI- 222
H+ + +++ IP+ + + +++ K+FVG L LTE D + F+ YG VVD I
Sbjct: 85 HEFNGKQVEIKRTIPKDS-VQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQIM 143
Query: 223 ----PKPFREFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEATPKKKMNERQDNRNNF 276
K R F F+ F D V L+ G +++ KV + +A PKK N + +
Sbjct: 144 RDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKAEPKKSSNPPPSSHGSA 203
Query: 277 DRRN-DRSRSPMSNSRQYGG 295
R R S+ YGG
Sbjct: 204 SRSAYGRDSRGHSSGNDYGG 223
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 84 NSSATQSKRSYPDNSGPVQNTD-----LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
N + KR+ P +S VQ+ D + V G+P T++D K +F+++G + + D
Sbjct: 88 NGKQVEIKRTIPKDS--VQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQIMRD 145
Query: 139 KNTGRSKGFGFIRFSS 154
T RS+GFGFI FSS
Sbjct: 146 HQTKRSRGFGFIVFSS 161
>gi|226487556|emb|CAX74648.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 389
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ W ++DLKEYF ++G + +K+D+ TG S+GFGF+ S + K + +
Sbjct: 61 LFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSVS 120
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H + N+ D P+ K + EP+ K+FVG + P++TE +RE+F +G V + +P
Sbjct: 121 EHWLKNKKID---PKKAKP-SREPL-RKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPY 175
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQ 246
+ + FV+F ++ A+ I +
Sbjct: 176 DTQKGKRKHYIFVSFSTEAAARKAISK 202
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
+ V GI T++ ++EYF FG +E ++ D G+ K + F+ FS+ +A KA+ K
Sbjct: 144 IFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAISKE 203
Query: 165 KHKIGNRICDVRI 177
+ +I R CDVR+
Sbjct: 204 RQEIFGRQCDVRV 216
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFEL-DSVAKSLIG 245
K+FVG L+ + ESDL+E+F +G V +I R F FVT E D V+K L
Sbjct: 60 KLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVLSV 119
Query: 246 QHVNIKDKKVVVMEATPKKK 265
+K+KK+ +A P ++
Sbjct: 120 SEHWLKNKKIDPKKAKPSRE 139
>gi|224061141|ref|XP_002300356.1| predicted protein [Populus trichocarpa]
gi|222847614|gb|EEE85161.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + LKEYF ++G + A + D+ TGR++GFGF+ F+ A + +++K
Sbjct: 8 LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVAERVIMEK 67
Query: 166 HKIGNRICDVR--IPE----------STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H + R + + +P S+ G+ P + K+FVG L +TE+D +++FE
Sbjct: 68 HVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSPGPGRTKKIFVGGLASTVTENDFKKYFE 127
Query: 213 YYGAVVDVLIP------KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ + ++ + + + K V V A PK+
Sbjct: 128 QFGIITDVVVMYDHNTLRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T+ND K+YFEQFG + V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTKKIFVGGLASTVTENDFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ + K H++ ++ +V+
Sbjct: 161 DRVLHKTFHELNGKMVEVK 179
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246
K+F+G ++ D E L+E+F YG VV+ +I + R F FV F VA+ +I +
Sbjct: 7 KLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVAERVIME 66
Query: 247 HVNIKDKKVVVMEATPK 263
+ + V +A P+
Sbjct: 67 KHVVDGRTVEAKKAVPR 83
>gi|294892748|ref|XP_002774214.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239879431|gb|EER06030.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 192
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 21/175 (12%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFG--TLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
V+ + V G+P ++DL+EYF FG +E +K+DK TGRS+GFGF+ + +S
Sbjct: 26 VRKLKVFVGGLPQGLQESDLREYFNNFGDDVVE-VEIKMDKVTGRSRGFGFVTLMNGDST 84
Query: 159 LKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVV 218
+ KH+I N+ DV +E +K+FVG L P E + ++F YGA+V
Sbjct: 85 -RLFNNKHRIKNKDIDV----------DEVTETKIFVGGLNPATGEQAVVDYFSKYGAIV 133
Query: 219 DVLIPKPF----REFAFVTFE-LDSVAKSL--IGQHVNIKDKKVVVMEATPKKKM 266
+ + + R FAFV FE ++V ++L I+D+ V V A P+KK+
Sbjct: 134 NCELAFDYAGMSRGFAFVIFEDAEAVHRTLDACPSGHTIEDRMVDVRRAEPRKKL 188
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 171 RICDVRIPESTKIGTEEPVASK--VFVGSLTPDLTESDLREHFEYYG-AVVDVLIPKP-- 225
++C ++P++ + + P+ K VFVG L L ESDLRE+F +G VV+V I
Sbjct: 7 QVCHDQVPKTPRPAYKNPIVRKLKVFVGGLPQGLQESDLREYFNNFGDDVVEVEIKMDKV 66
Query: 226 ---FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F FVT ++ + L IK+K + V E T K
Sbjct: 67 TGRSRGFGFVTL-MNGDSTRLFNNKHRIKNKDIDVDEVTETK 107
>gi|189234126|ref|XP_969016.2| PREDICTED: similar to mammalian A1, A2 /B1 hnRNP homologue
[Tribolium castaneum]
gi|270002487|gb|EEZ98934.1| hypothetical protein TcasGA2_TC004556 [Tribolium castaneum]
Length = 338
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS-SHESALKAMLK 164
L + G+ + TD LK++FE++G + V D T RS+GFGFI +S +H +
Sbjct: 21 LFIGGLDYRTTDESLKKHFEKWGEIVDVVVMKDPTTKRSRGFGFITYSRAHMVDDAQNDR 80
Query: 165 KHKIGNRICDVR--IPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAVVDV 220
HK+ R+ + + +P IG E A+ K+FVG L D+ E DLRE F+ YG ++
Sbjct: 81 PHKVDGRVVEPKRAVPRQD-IGRPEAGATVKKLFVGGLKDDVEEEDLRECFKSYGTILSC 139
Query: 221 LI-----PKPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
I R F F+ FE D V K + +H I K + V +A K +M+
Sbjct: 140 TIVTDKDTGKKRGFGFIEFEDYDPVDKICLYRHHQIHGKHIDVKKALSKAEMD 192
>gi|410954614|ref|XP_003983958.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Felis catus]
Length = 301
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GT+ V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTNESLRSHFEQWGTITDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICDVR---IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + HK+ R+ + + + E ++ +K+FVG + D E LR++FE YG
Sbjct: 70 AAMNARAHKVDGRVVEPKRAVLREDSQRPGAHLTVTKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 216 A--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
V++++ + R F FVTF + DSV K I ++ + V +A K++M
Sbjct: 130 KIEVIEIMTDQGSGKKRGFPFVTFDDHDSVDKIAIQKYHTVNGHNCEVRKALSKQEM 186
>gi|224065561|ref|XP_002301858.1| predicted protein [Populus trichocarpa]
gi|222843584|gb|EEE81131.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W T++ L+++F Q+G + + DK TGR +GFGF+ FS + K
Sbjct: 8 LFVGGIAWDTTEDTLRDHFNQYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDPVLHDK 67
Query: 166 HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI--- 222
H I R + +P S G K+FVG L +TE R++F+ YG V DV++
Sbjct: 68 HTIDGRTV-IILPLSLLWGLSCIGTKKIFVGGLPSTVTEDGFRQYFQSYGHVNDVVVMYD 126
Query: 223 ---PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPK 263
+P R F F+TF+ D+V L + K V V A PK
Sbjct: 127 QQTQRP-RGFGFITFDSEDAVDNVLQKTFHELNGKLVEVKRALPK 170
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLI 244
K+FVG + D TE LR+HF YG V V+I +P R F FV F SV ++
Sbjct: 6 GKLFVGGIAWDTTEDTLRDHFNQYGEVSQVVIMRDKTTGRP-RGFGFVVFSDPSVLDPVL 64
Query: 245 GQHVNIKDKKVVVM 258
I + V+++
Sbjct: 65 HDKHTIDGRTVIIL 78
>gi|197101465|ref|NP_001127331.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pongo abelii]
gi|75070806|sp|Q5RBU8.1|ROA2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|55728019|emb|CAH90762.1| hypothetical protein [Pongo abelii]
Length = 353
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 137
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ +H I V +A +++M E Q
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQ 197
Query: 271 DNRN 274
+R+
Sbjct: 198 SSRS 201
>gi|357495375|ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
gi|355519311|gb|AET00935.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
Length = 479
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L+EYF +G ++ A + D+ TGR++GFGF+ F A + +K
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 166 HKIGNRICDVR--IPE---------STKI-GTEEPVAS-KVFVGSLTPDLTESDLREHFE 212
H I R+ + + +P S I G+ P + K+FVG L +TESD +++F+
Sbjct: 68 HNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
Query: 213 YYGAVVDVLI------PKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+G + DV++ +P R F F+T++ ++V + L+ + K V V A PK+
Sbjct: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKE 185
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
GP + + V G+ T T++D K+YF+QFGT+ V D NT R +GFGFI + S E+
Sbjct: 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
Query: 159 LKAMLKK-HKIGNRICDVR 176
+ +LK H++ ++ +V+
Sbjct: 161 DQVLLKTFHELNGKMVEVK 179
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
+ K+F+G ++ D E LRE+F YG V + +I K R F FV F +VA ++
Sbjct: 5 SGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
+ NI + V +A P+ N
Sbjct: 65 QEKHNIDGRMVEAKKAVPRDDQN 87
>gi|341889790|gb|EGT45725.1| hypothetical protein CAEBREN_10423 [Caenorhabditis brenneri]
Length = 311
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 14/180 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T +L++YF +FG + V D T R++GFGFI F S K + +
Sbjct: 36 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLHAR 95
Query: 165 KHKIGNRICD--VRIPEST--KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
H++ + D V P+ T K+ T+ KVF+G L+ T D++++FE YG V D
Sbjct: 96 DHELDGKKIDPKVAFPKRTQAKLVTK---TKKVFIGGLSATSTLEDMKQYFETYGKVEDA 152
Query: 221 LI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKMNERQDNRN 274
++ + R F FVTF+ D VA + H + I K V +A PK+ M Q N++
Sbjct: 153 MLMYDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPVQLNKS 212
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,890,527,790
Number of Sequences: 23463169
Number of extensions: 260409446
Number of successful extensions: 776263
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11677
Number of HSP's successfully gapped in prelim test: 7542
Number of HSP's that attempted gapping in prelim test: 695116
Number of HSP's gapped (non-prelim): 67815
length of query: 363
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 219
effective length of database: 8,980,499,031
effective search space: 1966729287789
effective search space used: 1966729287789
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)