BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15045
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 177/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D +A+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 237 bits (605), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 171/278 (61%), Gaps = 20/278 (7%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLY 64
+YI V + E+ MEIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+
Sbjct: 4 EYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILH 63
Query: 65 APLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFT 116
AP +GW + VY + D + SSA + KR+ + +DL+VLG+PW T
Sbjct: 64 APENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAV------TKTSDLIVLGLPWKTT 117
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD +
Sbjct: 118 EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK 177
Query: 177 IPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235
+P S +EP+ S KVFVG T D++ +LR+ F YG VVDV IPKPFR FAFVTF
Sbjct: 178 LPNSKS--PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFA 235
Query: 236 LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
D VA+SL G+ + IK V V A PK N RQ R
Sbjct: 236 DDQVAQSLCGEDLIIKGVSVHVSTAEPKHN-NNRQLER 272
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 21/282 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLK+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
TF D VA+SL G+ + IK V + A PK N RQ R+
Sbjct: 233 TFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLERS 273
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 174/281 (61%), Gaps = 21/281 (7%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF--------DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPW 113
L+AP GW + VY + D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRA-------VQKTSDLIVLGLPW 113
Query: 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRIC 173
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R C
Sbjct: 114 KTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWC 173
Query: 174 DVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFV 232
D ++P S K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFV
Sbjct: 174 DCKLPNS-KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFV 232
Query: 233 TFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNR 273
TF D VA+SL G+ + IK V + A PK N RQ R
Sbjct: 233 TFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSN-RQLER 272
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 85 SSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
S A +S + + P D + + G+ W TD+ L++YFEQFG + V D TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
RS+GFGF+ F + + + M K+H + +I D P+ E+ +K+FVG + D
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID---PKRAIPREEQEKTAKMFVGGVPGDC 258
Query: 203 TESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKV 255
TE + R F +G V+D + +P R F FVT+E +S ++ + Q ++ I K V
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRP-RGFGFVTYENESAVEATMSQPYITIHGKPV 317
Query: 256 VVMEATPKKKMNERQD 271
V ATPK + + D
Sbjct: 318 EVKRATPKASLRDSHD 333
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 79 FDASGNSSATQSKRSYPDNSGPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
DAS N S P +S + + + G+ W T DLK+YF +FG +
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 128 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 184
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLI 244
FVG L+PD E +RE+F +G V + +P R F F+TF+ + K ++
Sbjct: 185 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 159 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 224 ----KPFREFAFVTFELDSVAKSLI 244
R F F+TF+ + K ++
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIM 240
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 157 EHKLNGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 213
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+TF E + V K + ++ N+ K + A K+
Sbjct: 214 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E D V K L + + K + A PK+ ++Q
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 244
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ S + ++
Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 134 DQKEHRLDGRVI----DPKKAMAMKKD 156
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+S P + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 103
Query: 157 SALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G
Sbjct: 104 SVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFG 160
Query: 216 AVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 30/215 (13%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+E+FEQ+GTL V D N+ RS+GFGF+ + S +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S++ G V K+FVG + D E LRE+FE Y
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTV-KKIFVGGIKEDTEEDHLREYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNE 268
G V++++ + R FAFVTFE DSV K +I ++ + + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEM-- 186
Query: 269 RQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNR 303
+ +S S++ GG+G Y +R
Sbjct: 187 ----------------ASVSGSQRERGGSGNYGSR 205
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 92 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 148
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 149 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 194
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTFE--------LDS 238
K+F+G L+ D ++ DL E+ +G VVD I P R F FV F+ L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPKK 264
L G+ ++ K K + + PKK
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKK 116
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 210 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTFE--------LDS 238
K+F+G L+ D ++ DL E+ +G VVD I P R F FV F+ L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPKK 264
L G+ ++ K K + + PKK
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKK 234
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ +K V +A PK++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + LK
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G + ++ +P
Sbjct: 91 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 147
Query: 224 ----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 148 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTFE--------LDS 238
K+F+G L+ D ++ DL E+ +G VVD I P R F FV F+ L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPKK 264
L G+ ++ K K + + PKK
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPPKK 115
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 130
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIP 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 131 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 186
Query: 224 -----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
R F F+TF E + V K L + + K + A PK+ ++Q
Sbjct: 187 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ 239
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFRE--FAFVTFELDSVAKSLI 244
A K+FVG L+ D ++ DL+++F +G VVD I P R F F+ F+ + + ++
Sbjct: 68 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 127
Query: 245 GQHVNIKDKKVVVMEATPKKKMNERQD 271
Q + D +V+ PKK M ++D
Sbjct: 128 DQKEHRLDGRVI----DPKKAMAMKKD 150
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+ T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+
Sbjct: 143 TQTKEERSKADLS--KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 146 GFGFIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLT 203
GFGF+ F S + + +H + ++ D + IP E+ K+FVG + PD+
Sbjct: 201 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD-----EQDKTGKIFVGGIGPDVR 255
Query: 204 ESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
+ E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ +
Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 315
Query: 258 MEATPK 263
A P+
Sbjct: 316 KRAEPR 321
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+GTL V D + RS+GFGF+ FS AM +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R FAFVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
N
Sbjct: 190 N 190
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+E+F +G + A V DK TGR +GFGF+ FS + + +K
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 166 HKIGNRICDVRIPES-----------------TKIGTEEPVASKVFVGSLTPDLTESDLR 208
H I R DV+ S + G K+FVG L P LT+ + R
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 209 EHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEAT 261
++FE YG V DV I +P R F FV+F+ + S++ + ++ K+V V A
Sbjct: 128 QYFEVYGPVTDVAIMYDQATNRP-RGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 262 PK 263
PK
Sbjct: 187 PK 188
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVV------DVLIPKPFREFAFVTFELDSVAKSLIG 245
K+FVG ++ + E LREHF YG V D L +P R F FV F SV ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRP-RGFGFVIFSDPSVLDRVLQ 65
Query: 246 QHVNIKDKKVVVMEATPKKK 265
+ +I ++V V A +++
Sbjct: 66 EKHSIDTREVDVKRAMSREE 85
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS-S 154
D+ P L + G+ + TD LK++FEQ+G + V D T RS+GFGFI +S +
Sbjct: 9 DHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRA 68
Query: 155 HESALKAMLKKHKIGNRICDV-RIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHF 211
H + HK+ R+ + R T+IG E A+ K+FVG + ++ E+DLR++F
Sbjct: 69 HMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF 128
Query: 212 EYYGAVVDVLI-----PKPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPK 263
+ YG VV I + R FAFV F + D V K + ++ I+ K + V +A PK
Sbjct: 129 KQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + DSV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K + K
Sbjct: 28 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETK 87
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+P+ TE ++++F +G + ++ +P
Sbjct: 88 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPM 144
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
R F FVT+ + K L+ + I K + A PK+
Sbjct: 145 DTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKE 190
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTFE--------LD 237
K+F+G L+ D ++ DL E+ +G VVD I P R F FV F+ L+
Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 85
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ L G+ ++ K K + + PKK
Sbjct: 86 TKEHKLDGKLIDPKRAKALKGKEPPKK 112
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 69
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 215 GA--VVDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF + +SV K +I ++ + V +A K++M
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK-AMLK 164
L V G+ W T+ +L+++F ++G +E NVK D TGRS+GF FI F++ E+ K +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H I ++ D P+ K K+FVG LT ++++ +++ +F +G +V+V +P
Sbjct: 118 EHIINSKKVD---PKKAK-----ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 224 ---KPFRE-FAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
K R+ F F+TF+ + V L+ I K+V V ATPK
Sbjct: 170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMN 267
+M
Sbjct: 206 EMQ 208
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K +
Sbjct: 28 MFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETN 87
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+HK+ ++ D + ++ K G E P KVFVG L+P+ TE ++++F +G + ++ +P
Sbjct: 88 EHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPI 144
Query: 224 ----KPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
R F FVT+ + K L+ + I K + A PK+
Sbjct: 145 DTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKE 190
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTFE--------LD 237
K+F+G L+ D ++ DL E+ +G V+D I P R F FV F+ L+
Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 85
Query: 238 SVAKSLIGQHVNIKDKKVVVMEATPKK 264
+ L G+ ++ K K + + PKK
Sbjct: 86 TNEHKLDGKLIDPKRAKALKGKEPPKK 112
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM- 162
+ + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F S K +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222
K+HK+ ++ D + ++ + G E P KVFVG L+P+ TE ++++F +G + ++ +
Sbjct: 94 TKEHKLDGKLIDPKRAKALQ-GKEPP--KKVFVGGLSPETTEEQIKQYFGGFGEIENIEL 150
Query: 223 P-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
P R F FVT+ + + V K L + I K + A PK+
Sbjct: 151 PMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 150 IRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLRE 209
I S+ S L +L++HK N P+ I SK+F+G L+ D ++ DL E
Sbjct: 6 ITRSTLVSTLSRLLRRHKESN-------PDFFLI------RSKMFIGGLSWDTSKKDLTE 52
Query: 210 HFEYYGAVVDVLIPK-PF----REFAFVTFE--------LDSVAKSLIGQHVNIKDKKVV 256
+ +G V+D I P R F FV F+ L++ L G+ ++ K K +
Sbjct: 53 YLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKAL 112
Query: 257 VMEATPKK 264
+ PKK
Sbjct: 113 QGKEPPKK 120
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--- 162
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 163 ---LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219
L I + C+ R + K G KVF+G L ++TE+DLR F YG V +
Sbjct: 69 PHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 220 VLI-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
V+I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF 234
EE K+FVG L+ + T+ +L +F +G ++D ++ K R F FVTF
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTF 55
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 137
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ +H I V +A +++M E Q
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQ 197
Query: 271 DNRN 274
+R+
Sbjct: 198 SSRS 201
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + T+ L+ ++EQ+G L V D + RS+GFGF+ FS AM +
Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LRE+FE YG +
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV-KKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
Query: 219 DVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRN 274
+++ K R F FVTF + D V K ++ ++ I V +A K++M + Q+ RN
Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 N 275
N
Sbjct: 190 N 190
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FEQ+G L V D T RS+GFGF+ +S E
Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 82
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+M + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 83 ASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTV-KKIFVGGIKEDTEEYHLRDYFEGY 141
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267
G + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQ 200
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FEQ+G L V D T RS+GFGF+ +S E
Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 82
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+M + HK+ R+ + V +S + G V K+FVG + D E LR++ E Y
Sbjct: 83 ASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTV-KKIFVGGIKEDTEEYHLRDYSESY 141
Query: 215 GAV--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G + ++V+ + R FAFVTF + D+V K ++ ++ I V +A K++M
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 199
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 125
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ ++ I V +A +++M E Q
Sbjct: 126 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQ 185
Query: 271 DNRN 274
+R+
Sbjct: 186 SSRS 189
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 137
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ ++ I V +A +++M E Q
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQ 197
Query: 271 DNRN 274
+R+
Sbjct: 198 SSRS 201
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 137
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ ++ I V +A +++M E Q
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQ 197
Query: 271 DNRN 274
+R+
Sbjct: 198 SSRS 201
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++FE YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGK 137
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K + ++ I V +A +++M E Q
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQ 197
Query: 271 DNRN 274
+R+
Sbjct: 198 SSRS 201
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS+G
Sbjct: 5 APQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 147 FGFIRFSSHESALKAMLK-KHKIGNRICDVRIP----ESTKIGTEEPVASKVFVGSLTPD 201
FGF+ F K + + +H++ ++ D ++ K+ T K+FVG L+ +
Sbjct: 63 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR---TKKIFVGGLSVN 119
Query: 202 LTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKV 255
T D++++FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 120 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 256 VVMEATPKKKMNERQDNRN 274
+A PK+ M+ R
Sbjct: 180 ECKKAQPKEVMSPTGSARG 198
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 84 NSSATQSKRSYPDNSGP---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P + + V G+ T D+K+YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS+G
Sbjct: 5 APQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 147 FGFIRFSSHESALKAMLK-KHKIGNRICDVRIP----ESTKIGTEEPVASKVFVGSLTPD 201
FGF+ F K + + +H++ ++ D ++ K+ T K+FVG L+ +
Sbjct: 63 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR---TKKIFVGGLSVN 119
Query: 202 LTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKV 255
T D++ +FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 256 VVMEATPKKKMNERQDNRN 274
+A PK+ M+ R
Sbjct: 180 ECKKAQPKEVMSPTGSARG 198
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 84 NSSATQSKRSYPDNSGP---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P + + V G+ T D+K YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS+G
Sbjct: 5 APQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 147 FGFIRFSSHESALKAMLK-KHKIGNRICDVRIP----ESTKIGTEEPVASKVFVGSLTPD 201
FGF+ F K + + +H++ ++ D ++ K+ T K+FVG L+ +
Sbjct: 63 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR---TKKIFVGGLSVN 119
Query: 202 LTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKV 255
T D++ +FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 256 VVMEATPKKKMNERQDNRN 274
+A PK+ M+ R
Sbjct: 180 ECKKAQPKEVMSPTGSARG 198
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 84 NSSATQSKRSYPDNSGP---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P + + V G+ T D+K YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS A
Sbjct: 7 QFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
Query: 162 MLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
M + H I R+ + V ES K G V K+FVG + D E LR++F YG
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFAEYGK 125
Query: 217 V--VDVLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMNERQ 270
+ ++++ + R F FVTF + D V K ++ ++ I V +A +++M E Q
Sbjct: 126 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQ 185
Query: 271 DNRN 274
+R+
Sbjct: 186 SSRS 189
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 32/246 (13%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+NSG + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAML-KKHKIGNRICDVRI-------PESTKIG--------TEEPVASKVFVGSLT 199
+ + H + R D + PE T+ ++ ++K+FVG +
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 200 PDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV-NIKD 252
+ E++LRE+F+ +G V +V++ +P R F F+TFE + + H +I
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMG 180
Query: 253 KKVVVMEATPK--KKMNERQDNRNNFDRR------NDRSRSPMSNSRQYGGGNGYYDNRQ 304
KKV V A P+ K Q + + R N + P +Q G G +
Sbjct: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
Query: 305 QQQGGY 310
Q GGY
Sbjct: 241 QAIGGY 246
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-K 164
L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F + +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 165 KHKIGNRICDVRI-------PESTKIG--------TEEPVASKVFVGSLTPDLTESDLRE 209
H + R D + PE T+ ++ ++K+FVG + + E++LRE
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131
Query: 210 HFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHV-NIKDKKVVVMEATP 262
+F+ +G V +V++ +P R F F+TFE + + H +I KKV V A P
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 263 KKKMNE 268
+ N+
Sbjct: 191 RDSKNQ 196
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P L + G+ + TD +LK +FE++G + V D T RS+GFGFI + SH S +
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY-SHSSMI 85
Query: 160 KAMLKK--HKIGNRICDVR--IP----ESTKIGTEEPVASKVFVGSLTPDLTESDLREHF 211
K HKI R+ + + +P +S G K+FVG+L D E +R++F
Sbjct: 86 DEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA---TVKKLFVGALKDDHDEQSIRDYF 142
Query: 212 EYYGAVVD--VLIPKPF---REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+++G +VD ++I K R FAFV F + D V K ++ + + K V V +A PK+
Sbjct: 143 QHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,111,253
Number of Sequences: 539616
Number of extensions: 6222212
Number of successful extensions: 36621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 410
Number of HSP's that attempted gapping in prelim test: 20416
Number of HSP's gapped (non-prelim): 10102
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)