Query psy15045
Match_columns 363
No_of_seqs 362 out of 3333
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:01:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.9E-33 1.3E-37 260.7 25.7 165 100-267 104-279 (346)
2 KOG0148|consensus 100.0 8.2E-32 1.8E-36 232.7 18.7 220 26-267 5-242 (321)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-30 6E-35 254.5 23.5 237 25-266 56-310 (578)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7E-30 1.5E-34 243.7 19.2 235 27-265 3-351 (352)
5 KOG0117|consensus 100.0 3.2E-29 6.9E-34 230.1 18.9 214 48-267 105-335 (506)
6 TIGR01645 half-pint poly-U bin 100.0 1.4E-28 3E-33 242.8 20.0 165 101-265 105-286 (612)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.1E-28 1.3E-32 230.4 21.0 161 102-265 2-173 (352)
8 KOG0144|consensus 100.0 2.4E-28 5.2E-33 223.4 13.2 167 101-269 32-212 (510)
9 KOG0145|consensus 100.0 7.5E-28 1.6E-32 207.0 14.0 236 25-263 38-358 (360)
10 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-26 2.3E-31 229.4 23.7 163 101-263 87-266 (457)
11 TIGR01628 PABP-1234 polyadenyl 99.9 1.2E-26 2.6E-31 234.5 21.9 166 101-267 176-368 (562)
12 KOG0117|consensus 99.9 1.1E-26 2.3E-31 213.6 17.3 158 101-267 81-252 (506)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-25 2.4E-30 222.1 24.8 155 100-264 55-223 (578)
14 TIGR01628 PABP-1234 polyadenyl 99.9 7E-27 1.5E-31 236.2 16.7 216 50-266 24-264 (562)
15 KOG0145|consensus 99.9 7.7E-26 1.7E-30 194.6 14.1 165 100-267 38-213 (360)
16 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-24 3.6E-29 213.8 22.1 248 17-264 79-449 (457)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.3E-24 2.8E-29 215.0 20.1 156 103-264 2-175 (481)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.9E-24 4.2E-29 213.7 20.3 158 101-263 273-480 (481)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.7E-24 1.2E-28 212.8 23.1 163 101-263 293-502 (509)
20 KOG0127|consensus 99.9 4.6E-24 1E-28 200.4 18.5 165 102-267 116-382 (678)
21 KOG0131|consensus 99.9 1.1E-24 2.4E-29 178.4 11.9 164 102-267 8-181 (203)
22 KOG0127|consensus 99.9 4E-24 8.7E-29 200.8 16.0 165 103-267 5-200 (678)
23 KOG4205|consensus 99.9 6.3E-24 1.4E-28 194.1 16.7 168 102-269 5-182 (311)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.2E-23 4.7E-28 208.6 20.2 159 100-264 172-376 (509)
25 KOG0109|consensus 99.9 3.2E-23 7E-28 181.2 14.5 148 104-267 3-154 (346)
26 KOG0124|consensus 99.9 2.7E-22 5.9E-27 180.1 10.2 164 103-266 113-293 (544)
27 KOG0144|consensus 99.9 6.9E-22 1.5E-26 181.2 11.2 215 50-265 58-506 (510)
28 KOG0123|consensus 99.9 6.6E-21 1.4E-25 180.3 15.1 149 104-267 2-157 (369)
29 KOG0123|consensus 99.8 3.1E-20 6.7E-25 175.7 16.0 210 47-266 19-249 (369)
30 TIGR01645 half-pint poly-U bin 99.8 1.7E-19 3.7E-24 178.6 20.5 155 26-180 106-283 (612)
31 KOG0110|consensus 99.8 2.8E-20 6.1E-25 180.3 12.5 165 103-267 515-697 (725)
32 KOG0147|consensus 99.8 3.1E-20 6.7E-25 175.6 8.4 247 17-263 169-528 (549)
33 KOG0146|consensus 99.8 1E-19 2.2E-24 157.5 10.4 164 102-266 18-368 (371)
34 KOG0105|consensus 99.8 3.2E-18 6.9E-23 140.7 16.4 140 102-246 5-169 (241)
35 KOG0148|consensus 99.8 1.2E-18 2.5E-23 151.4 10.6 133 100-265 3-144 (321)
36 KOG0147|consensus 99.7 4.9E-18 1.1E-22 160.9 7.8 168 102-269 178-364 (549)
37 KOG4206|consensus 99.7 3.3E-16 7.2E-21 133.7 16.4 156 103-261 9-220 (221)
38 PLN03134 glycine-rich RNA-bind 99.7 1.2E-16 2.6E-21 132.2 13.0 82 101-182 32-115 (144)
39 PLN03134 glycine-rich RNA-bind 99.7 1.6E-16 3.5E-21 131.4 13.7 77 189-265 33-116 (144)
40 KOG4211|consensus 99.7 1.6E-15 3.5E-20 142.1 19.7 162 102-266 9-185 (510)
41 TIGR01659 sex-lethal sex-letha 99.7 9.4E-16 2E-20 144.5 12.4 155 26-181 106-275 (346)
42 KOG0149|consensus 99.6 3.3E-16 7.2E-21 134.0 7.8 80 101-180 10-90 (247)
43 KOG0120|consensus 99.6 3.4E-15 7.5E-20 143.3 14.3 165 100-264 286-493 (500)
44 KOG0106|consensus 99.6 3.1E-15 6.6E-20 129.1 10.0 145 104-259 2-167 (216)
45 KOG0124|consensus 99.6 3.7E-14 8.1E-19 128.1 15.6 129 50-178 137-287 (544)
46 KOG1548|consensus 99.6 2.7E-13 5.8E-18 122.1 17.5 166 100-266 131-355 (382)
47 PF00076 RRM_1: RNA recognitio 99.5 4.4E-14 9.6E-19 101.9 9.5 68 106-174 1-70 (70)
48 KOG0110|consensus 99.5 5.1E-14 1.1E-18 137.3 12.3 154 102-261 384-596 (725)
49 KOG0122|consensus 99.5 3E-14 6.4E-19 122.6 8.9 81 101-181 187-269 (270)
50 KOG0131|consensus 99.5 6.2E-15 1.3E-19 121.4 4.4 162 21-184 3-180 (203)
51 KOG1456|consensus 99.5 2.4E-12 5.2E-17 116.8 19.8 163 98-266 26-202 (494)
52 KOG1457|consensus 99.5 2.7E-13 5.8E-18 115.1 12.4 147 100-246 31-267 (284)
53 KOG1190|consensus 99.5 6.6E-13 1.4E-17 121.8 15.6 155 103-262 297-490 (492)
54 KOG0121|consensus 99.5 8.2E-14 1.8E-18 108.2 6.9 79 102-180 35-115 (153)
55 KOG4212|consensus 99.5 1.4E-12 3E-17 120.5 15.7 157 102-259 43-290 (608)
56 PLN03120 nucleic acid binding 99.5 3.9E-13 8.5E-18 119.2 10.9 76 103-181 4-80 (260)
57 COG0724 RNA-binding proteins ( 99.5 1.1E-12 2.3E-17 119.8 14.0 123 103-225 115-260 (306)
58 PF14259 RRM_6: RNA recognitio 99.5 4.9E-13 1.1E-17 96.7 9.0 68 106-174 1-70 (70)
59 KOG0107|consensus 99.4 2.3E-13 4.9E-18 111.5 7.5 77 102-183 9-87 (195)
60 KOG0149|consensus 99.4 1.6E-13 3.5E-18 117.7 6.8 74 189-262 11-90 (247)
61 KOG0113|consensus 99.4 5E-13 1.1E-17 118.1 8.9 83 101-183 99-183 (335)
62 KOG0107|consensus 99.4 2.1E-12 4.6E-17 105.9 10.5 79 189-267 9-89 (195)
63 KOG0105|consensus 99.4 1.7E-12 3.6E-17 107.2 9.7 74 190-263 6-83 (241)
64 PF00076 RRM_1: RNA recognitio 99.4 9.2E-13 2E-17 94.9 6.8 64 193-256 1-70 (70)
65 KOG0125|consensus 99.4 1.7E-12 3.6E-17 116.2 9.8 83 98-182 91-175 (376)
66 KOG0125|consensus 99.4 9.4E-13 2E-17 117.8 8.1 100 165-267 74-178 (376)
67 PLN03120 nucleic acid binding 99.4 2.2E-12 4.7E-17 114.4 10.0 74 190-263 4-80 (260)
68 KOG0121|consensus 99.4 1.9E-12 4.1E-17 100.7 7.4 73 190-262 36-115 (153)
69 PLN03121 nucleic acid binding 99.4 3.7E-12 8.1E-17 111.2 9.8 76 102-180 4-80 (243)
70 KOG0129|consensus 99.3 2.6E-11 5.5E-16 115.0 15.5 161 99-260 255-451 (520)
71 KOG0126|consensus 99.3 1.5E-13 3.2E-18 113.2 0.3 79 102-180 34-114 (219)
72 KOG4207|consensus 99.3 1.7E-12 3.7E-17 109.1 6.5 81 101-181 11-93 (256)
73 KOG0111|consensus 99.3 8.5E-13 1.8E-17 111.8 4.2 83 102-184 9-93 (298)
74 KOG4205|consensus 99.3 5E-12 1.1E-16 116.1 9.4 193 26-218 5-215 (311)
75 KOG4211|consensus 99.3 2.6E-10 5.6E-15 107.6 20.0 158 101-259 101-354 (510)
76 smart00362 RRM_2 RNA recogniti 99.3 1.7E-11 3.6E-16 88.0 9.0 70 105-176 1-72 (72)
77 PLN03213 repressor of silencin 99.3 1E-11 2.3E-16 116.4 9.5 76 102-181 9-88 (759)
78 KOG4212|consensus 99.3 8.3E-11 1.8E-15 109.0 15.1 71 190-260 536-608 (608)
79 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.5E-16 89.5 7.3 64 193-256 1-70 (70)
80 KOG1190|consensus 99.3 1.5E-11 3.3E-16 112.9 9.2 156 101-262 26-227 (492)
81 KOG0130|consensus 99.3 1E-11 2.2E-16 97.5 6.5 86 98-183 67-154 (170)
82 smart00360 RRM RNA recognition 99.2 3.3E-11 7.1E-16 86.1 8.1 69 108-176 1-71 (71)
83 KOG0113|consensus 99.2 1.7E-10 3.7E-15 102.2 13.8 80 188-267 99-185 (335)
84 KOG0114|consensus 99.2 5E-11 1.1E-15 89.4 8.8 79 100-181 15-95 (124)
85 KOG0122|consensus 99.2 2.7E-11 5.9E-16 104.5 8.3 75 189-263 188-269 (270)
86 PLN03121 nucleic acid binding 99.2 5.9E-11 1.3E-15 103.7 10.2 74 190-263 5-81 (243)
87 KOG4207|consensus 99.2 4.5E-11 9.8E-16 100.6 8.4 76 188-263 11-93 (256)
88 PLN03213 repressor of silencin 99.2 4E-11 8.7E-16 112.6 8.6 74 190-263 10-88 (759)
89 KOG0108|consensus 99.2 3.4E-11 7.4E-16 115.4 8.0 79 104-182 19-99 (435)
90 smart00362 RRM_2 RNA recogniti 99.2 1.3E-10 2.9E-15 83.2 8.8 67 192-258 1-72 (72)
91 cd00590 RRM RRM (RNA recogniti 99.2 2.9E-10 6.3E-15 81.9 9.8 72 105-177 1-74 (74)
92 KOG0114|consensus 99.2 2.3E-10 4.9E-15 85.9 9.1 78 190-267 18-99 (124)
93 KOG0116|consensus 99.1 3.4E-10 7.4E-15 107.9 11.8 74 190-263 288-367 (419)
94 KOG0111|consensus 99.1 5.8E-11 1.3E-15 100.7 5.4 78 190-267 10-94 (298)
95 KOG0415|consensus 99.1 9.9E-11 2.1E-15 105.8 6.8 86 96-181 232-319 (479)
96 PF13893 RRM_5: RNA recognitio 99.1 3.8E-10 8.2E-15 77.7 8.1 54 207-260 1-56 (56)
97 cd00590 RRM RRM (RNA recogniti 99.1 8.5E-10 1.8E-14 79.4 9.0 68 192-259 1-74 (74)
98 KOG0146|consensus 99.0 2.6E-10 5.7E-15 99.5 5.6 82 101-182 283-366 (371)
99 smart00361 RRM_1 RNA recogniti 99.0 9.6E-10 2.1E-14 79.4 7.8 59 117-175 2-69 (70)
100 KOG0126|consensus 99.0 3.6E-11 7.8E-16 99.2 0.2 75 190-264 35-116 (219)
101 smart00360 RRM RNA recognition 99.0 1.2E-09 2.7E-14 77.7 7.4 64 195-258 1-71 (71)
102 KOG0132|consensus 99.0 1E-09 2.2E-14 108.4 8.6 108 99-212 417-528 (894)
103 KOG0130|consensus 99.0 1.2E-09 2.5E-14 86.0 6.7 77 189-265 71-154 (170)
104 PF13893 RRM_5: RNA recognitio 99.0 1.9E-09 4.2E-14 74.2 6.8 54 120-178 1-56 (56)
105 KOG1365|consensus 99.0 1.2E-09 2.7E-14 99.7 7.0 160 105-265 163-364 (508)
106 KOG1456|consensus 99.0 5E-08 1.1E-12 89.2 17.2 161 98-263 282-491 (494)
107 COG0724 RNA-binding proteins ( 98.9 3.5E-09 7.5E-14 96.4 9.3 73 190-262 115-194 (306)
108 KOG0109|consensus 98.9 1.3E-09 2.8E-14 96.4 5.9 71 191-264 3-75 (346)
109 KOG4210|consensus 98.9 1.6E-09 3.5E-14 99.3 6.5 165 102-266 87-267 (285)
110 KOG0153|consensus 98.9 3.1E-09 6.7E-14 96.3 7.7 80 96-181 221-303 (377)
111 KOG4208|consensus 98.9 7.6E-09 1.7E-13 87.5 7.8 81 101-181 47-130 (214)
112 KOG0153|consensus 98.9 8.5E-09 1.8E-13 93.4 8.3 77 185-262 223-302 (377)
113 KOG0112|consensus 98.8 2E-09 4.3E-14 108.0 4.5 161 99-266 368-534 (975)
114 KOG0120|consensus 98.8 1E-08 2.2E-13 99.2 9.0 160 101-266 173-372 (500)
115 KOG4661|consensus 98.8 2.2E-08 4.7E-13 95.9 10.1 80 102-181 404-485 (940)
116 KOG0108|consensus 98.8 8.8E-09 1.9E-13 98.9 7.4 77 191-267 19-102 (435)
117 KOG0128|consensus 98.8 1E-09 2.2E-14 109.6 -0.1 142 102-262 666-814 (881)
118 KOG4454|consensus 98.8 1.6E-09 3.5E-14 92.1 0.9 132 100-245 6-143 (267)
119 KOG0415|consensus 98.7 1.4E-08 3E-13 92.1 5.9 80 187-266 236-322 (479)
120 KOG0132|consensus 98.7 2.3E-08 5.1E-13 99.0 7.9 77 190-267 421-499 (894)
121 smart00361 RRM_1 RNA recogniti 98.7 9.2E-08 2E-12 69.0 7.1 54 204-257 2-69 (70)
122 KOG4206|consensus 98.6 1E-07 2.2E-12 82.1 7.6 78 190-267 9-94 (221)
123 KOG4660|consensus 98.6 7.9E-08 1.7E-12 92.4 5.7 156 100-262 72-249 (549)
124 KOG0533|consensus 98.5 2.9E-06 6.4E-11 75.3 14.6 78 190-267 83-166 (243)
125 KOG0116|consensus 98.5 1.9E-07 4.2E-12 89.3 7.2 78 103-180 288-366 (419)
126 KOG0533|consensus 98.4 9.5E-07 2.1E-11 78.4 8.3 80 102-182 82-163 (243)
127 PF04059 RRM_2: RNA recognitio 98.4 2.3E-06 5E-11 65.2 9.2 78 104-181 2-87 (97)
128 KOG2193|consensus 98.4 6.1E-08 1.3E-12 89.9 -0.2 151 104-266 2-160 (584)
129 KOG4661|consensus 98.4 8.4E-07 1.8E-11 85.3 7.0 75 190-264 405-486 (940)
130 KOG0226|consensus 98.3 4.1E-07 8.9E-12 79.4 4.0 82 100-181 187-270 (290)
131 KOG0226|consensus 98.3 5.2E-07 1.1E-11 78.7 3.8 160 103-263 96-270 (290)
132 KOG4208|consensus 98.3 3E-06 6.5E-11 72.0 8.0 79 185-263 44-130 (214)
133 KOG1365|consensus 98.3 7.7E-06 1.7E-10 75.4 10.9 158 103-260 60-240 (508)
134 KOG4209|consensus 98.3 1.1E-06 2.4E-11 78.2 5.3 82 100-181 98-180 (231)
135 KOG4660|consensus 98.1 1.9E-06 4.1E-11 83.1 4.1 70 187-256 72-143 (549)
136 KOG0151|consensus 98.1 5.8E-06 1.2E-10 81.6 6.9 82 99-180 170-256 (877)
137 KOG1457|consensus 98.1 1.8E-05 3.8E-10 68.1 8.5 78 190-267 34-122 (284)
138 KOG4676|consensus 98.0 2.8E-06 6E-11 78.4 3.1 144 103-246 7-208 (479)
139 KOG0106|consensus 98.0 7.2E-06 1.6E-10 71.3 4.5 70 191-263 2-73 (216)
140 PF08777 RRM_3: RNA binding mo 98.0 1.7E-05 3.7E-10 61.8 6.1 72 191-263 2-80 (105)
141 KOG4209|consensus 97.9 4.6E-05 1E-09 67.8 8.8 76 188-263 99-180 (231)
142 KOG0151|consensus 97.9 2.5E-05 5.3E-10 77.3 6.4 78 187-264 171-258 (877)
143 KOG4307|consensus 97.9 5.7E-05 1.2E-09 74.6 8.6 160 102-262 310-513 (944)
144 PF04059 RRM_2: RNA recognitio 97.8 0.00013 2.9E-09 55.6 7.5 72 191-262 2-86 (97)
145 KOG4454|consensus 97.7 0.00023 4.9E-09 61.2 8.4 75 189-263 8-87 (267)
146 PF11608 Limkain-b1: Limkain b 97.7 0.00022 4.7E-09 52.0 7.0 68 104-181 3-77 (90)
147 KOG1995|consensus 97.6 6.9E-05 1.5E-09 69.0 4.9 82 101-182 64-155 (351)
148 KOG1548|consensus 97.6 0.00015 3.2E-09 66.3 6.7 74 190-263 134-221 (382)
149 KOG1995|consensus 97.6 0.00033 7.2E-09 64.5 8.5 78 190-267 66-158 (351)
150 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00022 4.7E-09 48.2 5.4 52 191-244 2-53 (53)
151 KOG0128|consensus 97.5 8.1E-06 1.8E-10 82.3 -2.8 147 100-246 568-728 (881)
152 KOG4210|consensus 97.5 6E-05 1.3E-09 69.3 3.0 82 102-183 183-266 (285)
153 PF11608 Limkain-b1: Limkain b 97.4 0.00071 1.5E-08 49.4 6.8 68 191-263 3-77 (90)
154 PF08777 RRM_3: RNA binding mo 97.3 0.00066 1.4E-08 52.9 6.4 55 104-164 2-56 (105)
155 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0013 2.8E-08 50.5 7.9 71 191-262 7-91 (100)
156 COG5175 MOT2 Transcriptional r 97.2 0.0019 4.2E-08 58.9 8.9 108 103-210 114-240 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0014 3.1E-08 44.2 5.3 52 104-162 2-53 (53)
158 KOG1855|consensus 97.0 0.0076 1.6E-07 56.9 11.2 59 188-246 229-305 (484)
159 KOG4849|consensus 97.0 0.0014 3E-08 60.1 5.6 68 191-258 81-157 (498)
160 COG5175 MOT2 Transcriptional r 96.9 0.0023 4.9E-08 58.5 6.0 73 191-263 115-203 (480)
161 KOG0129|consensus 96.8 0.0039 8.4E-08 60.2 7.7 65 100-164 367-432 (520)
162 KOG4849|consensus 96.8 0.00096 2.1E-08 61.1 3.0 72 104-175 81-156 (498)
163 KOG1855|consensus 96.7 0.0024 5.2E-08 60.2 4.7 64 100-163 228-304 (484)
164 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0079 1.7E-07 46.2 6.7 77 102-179 5-90 (100)
165 PF08952 DUF1866: Domain of un 96.4 0.015 3.3E-07 47.5 7.4 73 188-263 25-107 (146)
166 KOG2202|consensus 96.4 0.01 2.2E-07 52.6 6.5 58 205-262 83-147 (260)
167 KOG4307|consensus 96.1 0.014 3.1E-07 58.3 7.0 74 103-177 867-943 (944)
168 KOG0115|consensus 96.1 0.03 6.4E-07 49.6 7.9 94 156-260 8-111 (275)
169 PF08675 RNA_bind: RNA binding 96.0 0.03 6.4E-07 41.0 6.4 53 103-164 9-61 (87)
170 KOG2314|consensus 95.9 0.013 2.8E-07 57.2 5.3 74 102-176 57-139 (698)
171 PF08952 DUF1866: Domain of un 95.6 0.034 7.4E-07 45.4 6.0 72 102-181 26-107 (146)
172 KOG1996|consensus 95.6 0.031 6.8E-07 50.3 6.0 62 203-264 299-368 (378)
173 KOG4676|consensus 95.4 0.02 4.3E-07 53.6 4.4 71 191-261 8-87 (479)
174 PF15023 DUF4523: Protein of u 95.4 0.081 1.8E-06 42.8 7.2 74 185-260 81-159 (166)
175 KOG2314|consensus 95.3 0.059 1.3E-06 52.8 7.3 70 190-259 58-140 (698)
176 KOG3152|consensus 95.2 0.013 2.9E-07 51.8 2.6 71 102-172 73-157 (278)
177 KOG0921|consensus 95.0 0.06 1.3E-06 55.9 6.9 13 142-154 899-911 (1282)
178 KOG0115|consensus 94.9 0.024 5.3E-07 50.2 3.3 59 104-163 32-90 (275)
179 KOG1996|consensus 94.7 0.086 1.9E-06 47.6 6.3 63 118-180 301-366 (378)
180 PF10309 DUF2414: Protein of u 94.2 0.39 8.4E-06 33.3 7.3 53 103-164 5-61 (62)
181 KOG2202|consensus 94.1 0.025 5.4E-07 50.2 1.5 61 118-179 83-146 (260)
182 PF15023 DUF4523: Protein of u 93.9 0.34 7.3E-06 39.3 7.4 71 102-179 85-160 (166)
183 PF10309 DUF2414: Protein of u 93.8 0.32 6.9E-06 33.8 6.3 53 191-246 6-61 (62)
184 PF07292 NID: Nmi/IFP 35 domai 93.8 0.094 2E-06 39.2 3.9 64 148-211 1-73 (88)
185 KOG0921|consensus 93.7 0.17 3.7E-06 52.7 6.8 14 66-79 649-662 (1282)
186 PF08675 RNA_bind: RNA binding 93.6 0.38 8.2E-06 35.3 6.6 52 191-246 10-61 (87)
187 KOG0112|consensus 93.6 0.09 1.9E-06 54.3 4.6 77 100-182 452-532 (975)
188 KOG3152|consensus 93.3 0.049 1.1E-06 48.3 1.9 64 190-253 74-156 (278)
189 KOG4285|consensus 93.0 0.41 9E-06 43.5 7.3 76 190-267 197-274 (350)
190 KOG2416|consensus 92.6 0.13 2.7E-06 50.9 3.8 62 96-163 437-499 (718)
191 KOG2193|consensus 92.3 0.091 2E-06 49.7 2.4 77 191-269 2-82 (584)
192 PF10567 Nab6_mRNP_bdg: RNA-re 92.1 3.3 7.1E-05 37.8 11.8 149 97-246 9-210 (309)
193 PF07576 BRAP2: BRCA1-associat 91.8 2.1 4.5E-05 33.5 9.1 59 104-164 14-73 (110)
194 KOG2416|consensus 91.7 0.13 2.9E-06 50.8 2.8 76 189-265 443-524 (718)
195 PRK11634 ATP-dependent RNA hel 91.5 1.6 3.4E-05 45.2 10.6 58 201-262 498-562 (629)
196 KOG2135|consensus 91.5 0.13 2.8E-06 49.5 2.5 61 203-264 386-447 (526)
197 KOG2591|consensus 91.4 0.46 1E-05 46.7 6.1 82 165-257 159-246 (684)
198 KOG2068|consensus 90.8 0.12 2.5E-06 47.8 1.4 108 102-210 76-200 (327)
199 KOG3973|consensus 89.6 1.4 3.1E-05 40.9 7.3 22 104-125 150-171 (465)
200 PF07576 BRAP2: BRCA1-associat 88.6 2.9 6.2E-05 32.7 7.5 56 191-246 14-73 (110)
201 KOG2135|consensus 88.5 0.25 5.5E-06 47.6 1.8 75 102-182 371-447 (526)
202 KOG4285|consensus 88.2 1.8 3.8E-05 39.6 6.8 68 103-177 197-266 (350)
203 KOG2591|consensus 87.3 1.1 2.5E-05 44.1 5.4 69 102-177 174-248 (684)
204 KOG2068|consensus 87.0 0.23 4.9E-06 46.0 0.5 74 191-264 78-164 (327)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 85.8 0.81 1.8E-05 39.1 3.3 62 102-163 6-73 (176)
206 PF04847 Calcipressin: Calcipr 85.3 3.1 6.7E-05 35.8 6.6 61 203-264 8-72 (184)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 84.4 1.3 2.9E-05 37.8 3.9 73 190-262 7-97 (176)
208 KOG0804|consensus 83.6 7.9 0.00017 37.5 9.0 59 103-163 74-133 (493)
209 KOG0804|consensus 83.5 3.4 7.4E-05 39.9 6.5 57 190-246 74-134 (493)
210 KOG4574|consensus 82.8 0.85 1.9E-05 47.2 2.4 75 192-267 300-378 (1007)
211 KOG2253|consensus 82.2 1.1 2.5E-05 45.1 3.0 68 101-177 38-107 (668)
212 KOG2253|consensus 80.0 1.3 2.8E-05 44.7 2.5 70 186-259 36-107 (668)
213 PF04847 Calcipressin: Calcipr 80.0 4.7 0.0001 34.7 5.7 60 116-181 8-71 (184)
214 PF11767 SET_assoc: Histone ly 76.9 13 0.00029 26.1 6.2 51 114-173 11-63 (66)
215 PF14111 DUF4283: Domain of un 76.3 4.7 0.0001 33.1 4.6 116 105-225 17-140 (153)
216 KOG4574|consensus 71.4 2.5 5.4E-05 43.9 2.0 71 105-181 300-374 (1007)
217 KOG2318|consensus 64.9 32 0.0007 34.6 8.0 128 101-263 172-308 (650)
218 PF07530 PRE_C2HC: Associated 62.8 19 0.00042 25.4 4.6 63 118-181 2-65 (68)
219 smart00596 PRE_C2HC PRE_C2HC d 62.7 17 0.00036 25.8 4.1 62 118-180 2-64 (69)
220 KOG4410|consensus 61.6 14 0.00031 33.6 4.6 48 190-238 330-378 (396)
221 PF11767 SET_assoc: Histone ly 60.7 39 0.00084 23.8 5.7 51 201-255 11-63 (66)
222 PF10567 Nab6_mRNP_bdg: RNA-re 56.0 23 0.0005 32.5 4.9 73 190-262 15-107 (309)
223 PF03880 DbpA: DbpA RNA bindin 56.0 48 0.001 23.6 5.8 57 113-178 11-74 (74)
224 PF03880 DbpA: DbpA RNA bindin 55.7 49 0.0011 23.5 5.9 57 200-260 11-74 (74)
225 PF03468 XS: XS domain; Inter 50.2 26 0.00056 27.7 3.9 40 115-157 29-68 (116)
226 PF02714 DUF221: Domain of unk 48.3 28 0.0006 32.6 4.6 56 148-212 1-56 (325)
227 KOG4213|consensus 47.3 13 0.00029 31.4 1.9 55 103-163 111-168 (205)
228 KOG4410|consensus 46.3 56 0.0012 29.9 5.8 48 102-155 329-377 (396)
229 KOG4483|consensus 45.5 48 0.001 31.8 5.4 57 103-166 391-448 (528)
230 PF15513 DUF4651: Domain of un 42.3 68 0.0015 22.2 4.4 18 118-135 9-26 (62)
231 PF07292 NID: Nmi/IFP 35 domai 42.1 39 0.00085 25.2 3.6 29 230-258 1-32 (88)
232 PF05918 API5: Apoptosis inhib 41.9 8.6 0.00019 38.9 0.0 8 255-262 457-464 (556)
233 PF02714 DUF221: Domain of unk 41.2 24 0.00052 33.0 2.9 37 230-266 1-37 (325)
234 KOG4483|consensus 41.2 85 0.0018 30.2 6.3 58 189-248 390-448 (528)
235 KOG4019|consensus 33.9 41 0.00088 28.7 2.8 74 191-265 11-92 (193)
236 COG5193 LHP1 La protein, small 33.5 17 0.00037 34.8 0.6 62 102-163 173-244 (438)
237 PF03468 XS: XS domain; Inter 32.0 42 0.00092 26.4 2.5 35 202-236 29-65 (116)
238 TIGR03636 L23_arch archaeal ri 29.3 2.2E+02 0.0049 20.6 6.0 54 105-161 15-70 (77)
239 TIGR02542 B_forsyth_147 Bacter 29.2 1.1E+02 0.0024 24.1 4.2 107 111-237 11-129 (145)
240 PF03439 Spt5-NGN: Early trans 27.9 1.3E+02 0.0029 22.0 4.4 31 216-246 33-63 (84)
241 PF13865 FoP_duplication: C-te 27.8 2.3E+02 0.005 20.2 6.5 18 331-348 36-53 (74)
242 PRK14548 50S ribosomal protein 27.1 2.6E+02 0.0057 20.6 6.2 55 105-162 22-78 (84)
243 KOG2891|consensus 25.7 66 0.0014 29.3 2.9 35 103-137 149-195 (445)
244 CHL00123 rps6 ribosomal protei 24.9 3.1E+02 0.0066 20.7 6.2 66 105-172 10-89 (97)
245 COG5353 Uncharacterized protei 24.6 3.7E+02 0.008 22.2 6.6 56 102-157 86-154 (161)
246 PRK10590 ATP-dependent RNA hel 24.5 1.8E+02 0.0038 28.8 6.0 8 227-234 342-349 (456)
247 KOG4008|consensus 23.8 72 0.0016 28.4 2.7 33 101-133 38-70 (261)
248 PRK10590 ATP-dependent RNA hel 23.1 2.6E+02 0.0057 27.5 7.0 10 230-239 316-325 (456)
249 KOG4019|consensus 22.4 68 0.0015 27.4 2.2 73 103-181 10-90 (193)
250 KOG4365|consensus 21.5 24 0.00052 34.2 -0.7 75 104-179 4-80 (572)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.9e-33 Score=260.74 Aligned_cols=165 Identities=25% Similarity=0.357 Sum_probs=146.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|+.||+|++|+|++|+.+++++|||||+|.+.++|++|| +++..+.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 446889999999999999999999999999999999999999999999999999999999999 468899999999999
Q ss_pred ccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCee
Q psy15045 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNI 250 (363)
Q Consensus 178 a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~ 250 (363)
+.+.... ...++|||+|||+.+|+++|+++|++||.|+.++|+++ +++||||+|++.++|++||+. +..+
T Consensus 184 a~p~~~~---~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 184 ARPGGES---IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccccccc---cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 8765322 23468999999999999999999999999999999865 469999999999999999997 5555
Q ss_pred CC--eEEEEEEccCCCccc
Q psy15045 251 KD--KKVVVMEATPKKKMN 267 (363)
Q Consensus 251 ~g--~~l~V~~a~~~~~~~ 267 (363)
.+ ++|.|.++.......
T Consensus 261 ~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 261 EGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCceeEEEEECCcccccc
Confidence 54 799999998765543
No 2
>KOG0148|consensus
Probab=100.00 E-value=8.2e-32 Score=232.68 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=174.9
Q ss_pred CCCeeeeecccccCCCce-eeeeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccccCCCCCCCCCCCCCC
Q psy15045 26 DDGTILLSTLQAQYPSAI-GLKYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNT 104 (363)
Q Consensus 26 ~~~~~~l~~l~~~~~~~~-~l~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
+..|+++++|++...+.- .-.|...+++..++++.+.+. ..|.... ..+.+.. ...--
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~---v~wa~~p------------~nQsk~t------~~~hf 63 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK---VNWATAP------------GNQSKPT------SNQHF 63 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc---cccccCc------------ccCCCCc------cccce
Confidence 344778888876666332 222333666666677655322 1232000 0001110 01234
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCCC
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPESTK 182 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~~ 182 (363)
.+||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.|| +++..|.+|.|+-.||..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 6999999999999999999999999999999999999999999999999999999999 67999999999999998776
Q ss_pred CC-------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--C
Q psy15045 183 IG-------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--H 247 (363)
Q Consensus 183 ~~-------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~ 247 (363)
.. ...+.++++||+|++..++|++|++.|++||.|.+|+++++ +||+||.|++.|+|.+||.. +
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNn 222 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNN 222 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcC
Confidence 32 23355799999999999999999999999999999999998 99999999999999999998 6
Q ss_pred CeeCCeEEEEEEccCCCccc
Q psy15045 248 VNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 248 ~~~~g~~l~V~~a~~~~~~~ 267 (363)
.+|.|..|+++|-+......
T Consensus 223 tei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 223 TEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred ceeCceEEEEeccccCCCCC
Confidence 79999999999987765544
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2.8e-30 Score=254.51 Aligned_cols=237 Identities=19% Similarity=0.234 Sum_probs=176.4
Q ss_pred CCCCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCc-----ccccCCCCCCCC
Q psy15045 25 EDDGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSS-----ATQSKRSYPDNS 98 (363)
Q Consensus 25 ~~~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 98 (363)
....++++++|-....+..-. .|...+.+..++++.+ .+..+.|+++..|....++..+-. .+...+.. ...
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l-~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL-GVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc-ccc
Confidence 345689999997766633222 2444677778899888 777889999665554332221111 11111110 011
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEEe-cCCCCCceeEEEEEeCCHHHHHHHHhc----ccccCCee
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGT-LEFANVKV-DKNTGRSKGFGFIRFSSHESALKAMLK----KHKIGNRI 172 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~al~~----~~~~~g~~ 172 (363)
.....++|||+|||+++++++|.++|++++. +.++.+.. ...+++++|||||+|.++++|..|+.. ...+.|+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 2235789999999999999999999999964 44444432 334567899999999999999999843 34688999
Q ss_pred eeEecccCCCCCCCC--CCcceEEEcCCCcCCCHHHHHHHhhcC--CCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--
Q psy15045 173 CDVRIPESTKIGTEE--PVASKVFVGSLTPDLTESDLREHFEYY--GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-- 246 (363)
Q Consensus 173 i~v~~a~~~~~~~~~--~~~~~l~V~nlp~~~t~e~L~~~F~~~--G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-- 246 (363)
|.|.|+.++...... ...++|||+||++++++++|+++|++| |.|++|.++ ++||||+|++.++|.+|++.
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELN 290 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhC
Confidence 999999876543222 235789999999999999999999999 999999887 56999999999999999986
Q ss_pred CCeeCCeEEEEEEccCCCcc
Q psy15045 247 HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 ~~~~~g~~l~V~~a~~~~~~ 266 (363)
+..|+|+.|+|.|++++...
T Consensus 291 G~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 291 GKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CCEECCEEEEEEEccCCCcc
Confidence 78999999999999987554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=7e-30 Score=243.73 Aligned_cols=235 Identities=23% Similarity=0.308 Sum_probs=179.5
Q ss_pred CCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccc-------------cCC
Q psy15045 27 DGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQ-------------SKR 92 (363)
Q Consensus 27 ~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~ 92 (363)
+.++++++|-.......-. .|...+....++++.++.+..+.||++..|.... ++..+++ ...
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~---~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPE---DAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHH---HHHHHHhhcccEEECCeeEEEEe
Confidence 4577888885555532212 2444778888899988888888899955544322 2222211 111
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCC
Q psy15045 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGN 170 (363)
Q Consensus 93 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g 170 (363)
..+ .......++|||+|||.++++++|+++|++||.|..++++.+..++.++|||||+|.+.++|..|| +++..+.|
T Consensus 80 a~~-~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 80 ARP-SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred ecc-cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 111 112335678999999999999999999999999999999999888999999999999999999999 45666666
Q ss_pred --eeeeEecccCCCCCC-----------------C---------------------------------------------
Q psy15045 171 --RICDVRIPESTKIGT-----------------E--------------------------------------------- 186 (363)
Q Consensus 171 --~~i~v~~a~~~~~~~-----------------~--------------------------------------------- 186 (363)
..|.|.++....... .
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 567887764332000 0
Q ss_pred ---------------------------CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEe
Q psy15045 187 ---------------------------EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTF 234 (363)
Q Consensus 187 ---------------------------~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F 234 (363)
.....+|||+|||+++++++|+++|++||.|.+++|+++ ++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 001236999999999999999999999999999999876 699999999
Q ss_pred cCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 235 ELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 235 ~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
.+.++|.+|+.. +..|+|+.|+|.|+..+..
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999997 8899999999999988764
No 5
>KOG0117|consensus
Probab=99.97 E-value=3.2e-29 Score=230.14 Aligned_cols=214 Identities=21% Similarity=0.280 Sum_probs=176.1
Q ss_pred eeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccccCCCC---C----CCCCCCCCCeEEEcCCCCCCCHHHH
Q psy15045 48 KVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSY---P----DNSGPVQNTDLVVLGIPWTFTDNDL 120 (363)
Q Consensus 48 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~l~V~nLp~~~te~~L 120 (363)
...+..--+||+.|.+.+.+.||++.+|+....+.. +++.-... + .-..+...++|||+|||++.++++|
T Consensus 105 EkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~---Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 105 EKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQE---AIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred HhccceeeEEEeecccCCCCcceEEEEeecHHHHHH---HHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHH
Confidence 336777778999999999999999888876553332 22221111 1 1122457899999999999999999
Q ss_pred HHHHhhcCC-eeEEEEEecCC-CCCceeEEEEEeCCHHHHHHHHh---c-ccccCCeeeeEecccCCCCCCCCCC--cce
Q psy15045 121 KEYFEQFGT-LEFANVKVDKN-TGRSKGFGFIRFSSHESALKAML---K-KHKIGNRICDVRIPESTKIGTEEPV--ASK 192 (363)
Q Consensus 121 ~~~F~~~G~-i~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~al~---~-~~~~~g~~i~v~~a~~~~~~~~~~~--~~~ 192 (363)
.+.|++.++ |++|.|...+. ..++||||||+|.++..|..|-. . ...+.|+.+.|.||.+......+.. .+.
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKv 261 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKV 261 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheee
Confidence 999999987 88888887764 56799999999999999888763 2 5578999999999999865544422 678
Q ss_pred EEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 193 l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++. +..|+|..|.|.+|+|..+.+
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 999999999999999999999999999999866 999999999999999998 789999999999999977665
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.4e-28 Score=242.83 Aligned_cols=165 Identities=21% Similarity=0.440 Sum_probs=146.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+++++++|+++|.+||+|.+|+|+.|+.+++++|||||+|.+.++|.+|+ +++..++|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 4688999999999875
Q ss_pred cCCCCC--------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHh
Q psy15045 179 ESTKIG--------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 179 ~~~~~~--------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~ 245 (363)
...... ......++|||+|||+++++++|+++|+.||.|.+++|.++ ++|||||+|++.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 433211 11123579999999999999999999999999999999865 68999999999999999999
Q ss_pred c--CCeeCCeEEEEEEccCCCc
Q psy15045 246 Q--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 246 ~--~~~~~g~~l~V~~a~~~~~ 265 (363)
. +..|+|+.|+|.++.+...
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 8 6799999999999887543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=6.1e-28 Score=230.38 Aligned_cols=161 Identities=23% Similarity=0.390 Sum_probs=143.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
+.++|||+|||.++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+|| +++..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4679999999999999999999999999999999999999999999999999999999999 46889999999999987
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
+.... ...++|||+|||..+++++|+++|++||.|..+.++.+ ++|||||+|++.++|+.|++. +..+.|
T Consensus 82 ~~~~~---~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSDS---IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred ccccc---cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 65432 23478999999999999999999999999999988754 589999999999999999987 556655
Q ss_pred --eEEEEEEccCCCc
Q psy15045 253 --KKVVVMEATPKKK 265 (363)
Q Consensus 253 --~~l~V~~a~~~~~ 265 (363)
.+|.|.++.....
T Consensus 159 ~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 159 CTEPITVKFANNPSS 173 (352)
T ss_pred CceeEEEEECCCCCc
Confidence 6899999887653
No 8
>KOG0144|consensus
Probab=99.95 E-value=2.4e-28 Score=223.39 Aligned_cols=167 Identities=28% Similarity=0.424 Sum_probs=147.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh---cccccCC--eeeeE
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML---KKHKIGN--RICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~---~~~~~~g--~~i~v 175 (363)
.+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+. |...+.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 466789999999999999999999999999999999999999999999999999999999884 4555666 67888
Q ss_pred ecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc---CC
Q psy15045 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ---HV 248 (363)
Q Consensus 176 ~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~---~~ 248 (363)
++++.+...- ....+|||+-|+..+||.+++++|++||.|++|.|.++ +||+|||+|.+.+.|..||+. .+
T Consensus 112 k~Ad~E~er~--~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 112 KYADGERERI--VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cccchhhhcc--ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8888775443 33479999999999999999999999999999999987 899999999999999999998 23
Q ss_pred eeCCe--EEEEEEccCCCccccc
Q psy15045 249 NIKDK--KVVVMEATPKKKMNER 269 (363)
Q Consensus 249 ~~~g~--~l~V~~a~~~~~~~~~ 269 (363)
.+.|+ +|.|+||++++.+..+
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred eeccCCCceEEEecccCCCchHH
Confidence 66665 8999999998877633
No 9
>KOG0145|consensus
Probab=99.95 E-value=7.5e-28 Score=206.96 Aligned_cols=236 Identities=26% Similarity=0.344 Sum_probs=186.3
Q ss_pred CCCCeeeeecccccCC--CceeeeeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCccccc-----------C
Q psy15045 25 EDDGTILLSTLQAQYP--SAIGLKYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQS-----------K 91 (363)
Q Consensus 25 ~~~~~~~l~~l~~~~~--~~~~l~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~ 91 (363)
.+..|.|+.+...|.- +...-.|.+.+...++++++|+.++.+.||++.-|+ +..++++++.. |
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv---~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV---RPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeec---ChHHHHHHHhhhcceeeccceEE
Confidence 4445667777655433 221223455788889999999999999999954443 45555555433 2
Q ss_pred CCCCCCC-CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccccc
Q psy15045 92 RSYPDNS-GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKI 168 (363)
Q Consensus 92 ~~~~~~~-~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~ 168 (363)
-+..+++ ......+|||.+||+.+|..+|+.+|++||.|..-+|+.|..+|.+||.+||.|...++|+.||+ +++.-
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 2233333 45678899999999999999999999999999999999998999999999999999999999994 56655
Q ss_pred CC--eeeeEecccCCCCCCC------------------------------------------------------------
Q psy15045 169 GN--RICDVRIPESTKIGTE------------------------------------------------------------ 186 (363)
Q Consensus 169 ~g--~~i~v~~a~~~~~~~~------------------------------------------------------------ 186 (363)
.| .+|.|+++....+...
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 44 6799998765432100
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
.....+|||.||.++++|.-|+++|.+||.|..|++++| .|||+||.+.+.++|..||.. +..++++.|.|+|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 011458999999999999999999999999999999987 689999999999999999997 7899999999999
Q ss_pred ccCC
Q psy15045 260 ATPK 263 (363)
Q Consensus 260 a~~~ 263 (363)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 6554
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.1e-26 Score=229.41 Aligned_cols=163 Identities=26% Similarity=0.413 Sum_probs=145.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||..+++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|| +++..+.|+.|.|+++.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 35789999999999999999999999999999999999999999999999999999999999 57889999999998865
Q ss_pred CCCCC---------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHh
Q psy15045 180 STKIG---------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 180 ~~~~~---------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~ 245 (363)
..... ...+..++|||+|||..+++++|+++|++||.|..|.+.++ ++|||||+|.+.++|.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~ 246 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALE 246 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 43211 11233589999999999999999999999999999999854 57999999999999999998
Q ss_pred c--CCeeCCeEEEEEEccCC
Q psy15045 246 Q--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 246 ~--~~~~~g~~l~V~~a~~~ 263 (363)
. +..|.|++|.|.|+...
T Consensus 247 ~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 247 VMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred hcCCcEECCEEEEEEEccCC
Confidence 6 78999999999998744
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.2e-26 Score=234.55 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=146.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccC----Ceeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIG----NRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~----g~~i~ 174 (363)
...++|||+|||.++|+++|+++|++||+|.++.++++ .++.++|||||+|.+.++|.+|+ +++..+. |+.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 35678999999999999999999999999999999998 47899999999999999999999 4678888 99999
Q ss_pred EecccCCCCC---------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEec
Q psy15045 175 VRIPESTKIG---------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFE 235 (363)
Q Consensus 175 v~~a~~~~~~---------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~ 235 (363)
|.++..+... .......+|||+||++.+++++|+++|++||.|++|+++.+ ++|||||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 9887655322 11223578999999999999999999999999999999865 6899999999
Q ss_pred CHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 236 LDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 236 ~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
+.++|.+|+.. +..|+|++|.|.+|..+..+.
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHH
Confidence 99999999987 679999999999999876553
No 12
>KOG0117|consensus
Probab=99.95 E-value=1.1e-26 Score=213.61 Aligned_cols=158 Identities=22% Similarity=0.401 Sum_probs=145.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccccc-CCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKI-GNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~-~g~~i~v~~ 177 (363)
...+.|||+.||.++.|++|.-+|++.|+|-+++||+|+.+|.+||||||+|.+.+.|+.||+ ++++| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999994 56666 589999999
Q ss_pred ccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCC------CCcEEEEEecCHHHHHHHHhc----
Q psy15045 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKP------FREFAFVTFELDSVAKSLIGQ---- 246 (363)
Q Consensus 178 a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~---- 246 (363)
+..+ ++|||+|+|.+.++++|.+.|++.++ |++|.+.+. .||||||+|.++..|..|..+
T Consensus 161 Svan---------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 161 SVAN---------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred eeec---------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 8877 89999999999999999999999997 888888753 799999999999999988887
Q ss_pred CCeeCCeEEEEEEccCCCccc
Q psy15045 247 HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 247 ~~~~~g~~l~V~~a~~~~~~~ 267 (363)
..++.|..+.|.||.|+.+..
T Consensus 232 ~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred ceeecCCcceeeccCcccCCC
Confidence 358999999999999987655
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.1e-25 Score=222.07 Aligned_cols=155 Identities=25% Similarity=0.429 Sum_probs=133.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccccc-CCeeeeEe
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKI-GNRICDVR 176 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~-~g~~i~v~ 176 (363)
+...++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||. ++..+ .++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345789999999999999999999999999999999999 799999999999999999999994 45566 47888787
Q ss_pred cccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEec-C-----CCCcEEEEEecCHHHHHHHHhc---
Q psy15045 177 IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIP-K-----PFREFAFVTFELDSVAKSLIGQ--- 246 (363)
Q Consensus 177 ~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~-~-----~~~g~afV~F~~~~~A~~Ai~~--- 246 (363)
++.. .++|||+|||+++++++|.++|++++. ++.+.+. . .+++||||+|+++++|.+|+..
T Consensus 134 ~S~~---------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 134 ISVD---------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred cccc---------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 6543 378999999999999999999999974 5554443 1 2689999999999999999976
Q ss_pred -CCeeCCeEEEEEEccCCC
Q psy15045 247 -HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 247 -~~~~~g~~l~V~~a~~~~ 264 (363)
...+.|+.|.|.|+.+..
T Consensus 205 gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred cceEecCceEEEEeecccc
Confidence 247889999999998864
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=7e-27 Score=236.18 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=167.1
Q ss_pred eceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC----------CcccccCCCCCCCC-CCCCCCeEEEcCCCCCCCHH
Q psy15045 50 ESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN----------SSATQSKRSYPDNS-GPVQNTDLVVLGIPWTFTDN 118 (363)
Q Consensus 50 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~te~ 118 (363)
.+....|+++++..+..+.|+++..|....++..+ ++.+....+..++. .....++|||+|||.+++++
T Consensus 24 ~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~ 103 (562)
T TIGR01628 24 FGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNK 103 (562)
T ss_pred cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHH
Confidence 45566778888888778888884444332211111 11111111111111 12245689999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCCCCCC--CCCCcceEE
Q psy15045 119 DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPESTKIGT--EEPVASKVF 194 (363)
Q Consensus 119 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~~~~~--~~~~~~~l~ 194 (363)
+|+++|++||.|.+|+++.+ .+|+++|||||+|.+.++|.+|+ .++..++++.|.|.....+.... .....++||
T Consensus 104 ~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~ 182 (562)
T TIGR01628 104 ALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLY 182 (562)
T ss_pred HHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEE
Confidence 99999999999999999998 58889999999999999999999 46888999999997765543332 233457899
Q ss_pred EcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeC----CeEEEEEEccCCC
Q psy15045 195 VGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIK----DKKVVVMEATPKK 264 (363)
Q Consensus 195 V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~----g~~l~V~~a~~~~ 264 (363)
|+|||.++|+++|+++|++||.|.++.+.++ ++|||||+|.+.++|.+|++. +..|. |+.|.|.++..+.
T Consensus 183 V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 183 VKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 9999999999999999999999999999865 578999999999999999987 67888 9999999987765
Q ss_pred cc
Q psy15045 265 KM 266 (363)
Q Consensus 265 ~~ 266 (363)
++
T Consensus 263 er 264 (562)
T TIGR01628 263 ER 264 (562)
T ss_pred hh
Confidence 54
No 15
>KOG0145|consensus
Probab=99.94 E-value=7.7e-26 Score=194.60 Aligned_cols=165 Identities=22% Similarity=0.366 Sum_probs=145.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+ +++..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445678999999999999999999999999999999999999999999999999999999999 578889999999999
Q ss_pred ccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCee
Q psy15045 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNI 250 (363)
Q Consensus 178 a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~ 250 (363)
+.+.... .....|||.+||..+|..+|+++|++||.|..-+|.-| +||.+||.|+..++|+.||.. +..-
T Consensus 118 ARPSs~~---Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 118 ARPSSDS---IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred ccCChhh---hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 9987433 33478999999999999999999999999887777655 899999999999999999997 3322
Q ss_pred C--CeEEEEEEccCCCccc
Q psy15045 251 K--DKKVVVMEATPKKKMN 267 (363)
Q Consensus 251 ~--g~~l~V~~a~~~~~~~ 267 (363)
- -.+|.|+||....+..
T Consensus 195 ~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCCCeEEEecCCccccc
Confidence 2 2389999998876554
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.7e-24 Score=213.79 Aligned_cols=248 Identities=19% Similarity=0.244 Sum_probs=181.4
Q ss_pred CcccccccCCCCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC---------Cc
Q psy15045 17 EDGMEIPSEDDGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN---------SS 86 (363)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~ 86 (363)
..++..+..+..++++++|-.......-. .|...+....|+++.+..+..+.|+++..|....++..+ ..
T Consensus 79 ~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~ 158 (457)
T TIGR01622 79 KEPLTEAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGR 158 (457)
T ss_pred ccccCccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCe
Confidence 34555556667789999996655522111 223366777888888888888888886555432211100 00
Q ss_pred cc-----------ccCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCH
Q psy15045 87 AT-----------QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155 (363)
Q Consensus 87 ~~-----------~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 155 (363)
.+ ...............++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.
T Consensus 159 ~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred eeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 00 0000000011112368999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHH--hcccccCCeeeeEecccCCCCC-------------------------------------------------
Q psy15045 156 ESALKAM--LKKHKIGNRICDVRIPESTKIG------------------------------------------------- 184 (363)
Q Consensus 156 ~~a~~al--~~~~~~~g~~i~v~~a~~~~~~------------------------------------------------- 184 (363)
++|.+|+ +++..|.|+.|.|.++......
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSK 318 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccch
Confidence 9999999 4688999999999995321000
Q ss_pred -----------------C---------------------CCCCcceEEEcCCCcCCC----------HHHHHHHhhcCCC
Q psy15045 185 -----------------T---------------------EEPVASKVFVGSLTPDLT----------ESDLREHFEYYGA 216 (363)
Q Consensus 185 -----------------~---------------------~~~~~~~l~V~nlp~~~t----------~e~L~~~F~~~G~ 216 (363)
. .....++|+|.||....+ .+||+++|++||.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~ 398 (457)
T TIGR01622 319 IALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGG 398 (457)
T ss_pred hhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCC
Confidence 0 012256788899855433 3789999999999
Q ss_pred eEEEEec-CCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 217 VVDVLIP-KPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 217 i~~i~i~-~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
|+.|.|. +...|++||+|.+.++|.+|+.. +..|+|+.|.|.|.....
T Consensus 399 v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 399 VVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred eeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 9999998 44789999999999999999998 789999999999987644
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.3e-24 Score=214.97 Aligned_cols=156 Identities=20% Similarity=0.201 Sum_probs=133.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh----cccccCCeeeeEecc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML----KKHKIGNRICDVRIP 178 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~----~~~~~~g~~i~v~~a 178 (363)
+++|||+|||+++++++|+++|++||+|.+|.|+++ +|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 679999999999999999999999999999999865 6899999999999999994 467899999999998
Q ss_pred cCCCCCCC---------CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCC-CcEEEEEecCHHHHHHHHhc--
Q psy15045 179 ESTKIGTE---------EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-REFAFVTFELDSVAKSLIGQ-- 246 (363)
Q Consensus 179 ~~~~~~~~---------~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~-~g~afV~F~~~~~A~~Ai~~-- 246 (363)
..+..... .....+|||.||++.+|+++|+++|++||.|.+|.+.++. +++|||+|.+.++|.+|++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhc
Confidence 75431111 1123478999999999999999999999999999998763 47999999999999999986
Q ss_pred CCeeCC--eEEEEEEccCCC
Q psy15045 247 HVNIKD--KKVVVMEATPKK 264 (363)
Q Consensus 247 ~~~~~g--~~l~V~~a~~~~ 264 (363)
+..|.+ +.|+|.|+++..
T Consensus 156 g~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 156 GADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred CCcccCCceEEEEEEecCCC
Confidence 667743 589999988744
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.9e-24 Score=213.73 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
..+++|||+|||+ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|..|| +++..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3678999999998 69999999999999999999999874 699999999999999999 568899999999998
Q ss_pred ccCCCCCC----------------------------------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCC--eEEEE
Q psy15045 178 PESTKIGT----------------------------------EEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVL 221 (363)
Q Consensus 178 a~~~~~~~----------------------------------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~--i~~i~ 221 (363)
+....... ..+++.+|||+|||+++++++|+++|+.||. |+.++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 75431000 0123578999999999999999999999998 88898
Q ss_pred ecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeE------EEEEEccCC
Q psy15045 222 IPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKK------VVVMEATPK 263 (363)
Q Consensus 222 i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~------l~V~~a~~~ 263 (363)
+... .+++|||+|++.++|..|+.. ++.|+++. |+|+|++++
T Consensus 428 ~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 8644 368999999999999999997 77898884 999999875
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.7e-24 Score=212.79 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=139.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||..+++++|+++|+.||.|..+.|+.++.+|.++|||||+|.+.++|..|| +++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999 4788999999999997
Q ss_pred cCCCCCC-------------------------CCCCcceEEEcCCCcC--C--------CHHHHHHHhhcCCCeEEEEec
Q psy15045 179 ESTKIGT-------------------------EEPVASKVFVGSLTPD--L--------TESDLREHFEYYGAVVDVLIP 223 (363)
Q Consensus 179 ~~~~~~~-------------------------~~~~~~~l~V~nlp~~--~--------t~e~L~~~F~~~G~i~~i~i~ 223 (363)
....... ...++.+|+|.||... + ..++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 5432110 0123578899999642 1 236899999999999999998
Q ss_pred CC--------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 224 KP--------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 224 ~~--------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
++ ..|+|||+|.+.++|++|+.. +..|+|+.|.|.|....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 64 358999999999999999997 77999999999997764
No 20
>KOG0127|consensus
Probab=99.92 E-value=4.6e-24 Score=200.41 Aligned_cols=165 Identities=28% Similarity=0.392 Sum_probs=143.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
+.-+|.|+|||+.+.+.+|+.+|+.||.|.+|.|++.+..+.+ |||||.|....+|..||. |++.|+||+|.|.||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999988766665 999999999999999994 6999999999999987
Q ss_pred CCCCC------------------------------------------CC-------------------------------
Q psy15045 180 STKIG------------------------------------------TE------------------------------- 186 (363)
Q Consensus 180 ~~~~~------------------------------------------~~------------------------------- 186 (363)
++..- .+
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 65310 00
Q ss_pred --------------CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-
Q psy15045 187 --------------EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ- 246 (363)
Q Consensus 187 --------------~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~- 246 (363)
.....+|||.|||+++|+++|.++|++||.|.++.|+.+ ++|.|||.|.+..+|+.||..
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 001368999999999999999999999999999988764 799999999999999999986
Q ss_pred ------C-CeeCCeEEEEEEccCCCccc
Q psy15045 247 ------H-VNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 247 ------~-~~~~g~~l~V~~a~~~~~~~ 267 (363)
+ ..|+||.|.|..|.++.+..
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred CccCCCceEEEeccEEeeeeccchHHHH
Confidence 2 58999999999999987554
No 21
>KOG0131|consensus
Probab=99.92 E-value=1.1e-24 Score=178.42 Aligned_cols=164 Identities=24% Similarity=0.357 Sum_probs=144.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
...||||+||+..++++.|.++|-+.|+|..+.+.+|+.+...+|||||+|.+.|+|+-|+ +++..+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4679999999999999999999999999999999999999999999999999999999999 57889999999999988
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE-EEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeC
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-VLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIK 251 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~-i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~ 251 (363)
.. ......+.+|||+||.+.+++..|.+.|+.||.+.. -.++++ +++||||.|.+.+.+.+|++. +..++
T Consensus 88 ~~--~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 88 AH--QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cc--cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 32 233344589999999999999999999999999765 344443 688999999999999999998 67889
Q ss_pred CeEEEEEEccCCCccc
Q psy15045 252 DKKVVVMEATPKKKMN 267 (363)
Q Consensus 252 g~~l~V~~a~~~~~~~ 267 (363)
.+++.|+++..+....
T Consensus 166 nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTKG 181 (203)
T ss_pred CCceEEEEEEecCCCc
Confidence 9999999988776543
No 22
>KOG0127|consensus
Probab=99.92 E-value=4e-24 Score=200.81 Aligned_cols=165 Identities=26% Similarity=0.444 Sum_probs=147.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~ 180 (363)
+.||||++||++++.++|.++|+.+|+|..+.++.++.++.+|||+||+|+..+++..|+. +...+.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999994 46779999999999876
Q ss_pred CCCCCCC-----------------------CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEE
Q psy15045 181 TKIGTEE-----------------------PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVT 233 (363)
Q Consensus 181 ~~~~~~~-----------------------~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~ 233 (363)
+...... .+..+|.|.|||+.+.+.+|+.+|+.||.|..|.|++. -.|||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 5432100 11458999999999999999999999999999999965 34999999
Q ss_pred ecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 234 FELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 234 F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
|.+..+|..|++. ++.|+||+|-|.||.++....
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 9999999999998 889999999999999987655
No 23
>KOG4205|consensus
Probab=99.92 E-value=6.3e-24 Score=194.10 Aligned_cols=168 Identities=36% Similarity=0.579 Sum_probs=152.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~ 180 (363)
+.++|||++|+++++++.|++.|.+||+|.+|.+++|+.+++++||+||+|.+.+...++|.. .|.|+|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 688999999999999999999999999999999999999999999999999999999999865 7889999999999988
Q ss_pred CCCCCCCC---CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeC
Q psy15045 181 TKIGTEEP---VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIK 251 (363)
Q Consensus 181 ~~~~~~~~---~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~ 251 (363)
........ ..++|||++||..+++++|+++|++||.|..+.++.| .++|+||.|.+.+++.+++.. -|.|+
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 76443322 3679999999999999999999999999998888754 789999999999999999988 78999
Q ss_pred CeEEEEEEccCCCccccc
Q psy15045 252 DKKVVVMEATPKKKMNER 269 (363)
Q Consensus 252 g~~l~V~~a~~~~~~~~~ 269 (363)
|+.+.|..|.|+......
T Consensus 165 gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQST 182 (311)
T ss_pred CceeeEeeccchhhcccc
Confidence 999999999999877643
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=2.2e-23 Score=208.60 Aligned_cols=159 Identities=25% Similarity=0.361 Sum_probs=130.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hccc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQF------------GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKH 166 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~ 166 (363)
....++|||+|||+++++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|| +++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 3467899999999999999999999975 23444443 345899999999999999999 5788
Q ss_pred ccCCeeeeEecccCCCCC--------------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEE
Q psy15045 167 KIGNRICDVRIPESTKIG--------------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220 (363)
Q Consensus 167 ~~~g~~i~v~~a~~~~~~--------------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i 220 (363)
.+.|+.|.|......... .......+|||+|||..+++++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 899999999754321100 001124789999999999999999999999999999
Q ss_pred EecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 221 LIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 221 ~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
.++++ ++|||||+|.+.++|..|+.. +..|.|+.|.|.++....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 98765 689999999999999999986 789999999999987543
No 25
>KOG0109|consensus
Probab=99.90 E-value=3.2e-23 Score=181.23 Aligned_cols=148 Identities=24% Similarity=0.455 Sum_probs=135.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc--ccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK--KHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~--~~~~~g~~i~v~~a~~~ 181 (363)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ ||||..++...|+.||.| +..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 999999999999999965 66899999999998877
Q ss_pred CCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 182 ~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
. ..+.+|+|+||.+.++.++|+..|++||.|.+|.|. ++|+||+|+-.++|..|+.. +.+|.|++++|..
T Consensus 75 s-----k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 S-----KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred C-----CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 3 345799999999999999999999999999999999 56999999999999999986 7899999999999
Q ss_pred ccCCCccc
Q psy15045 260 ATPKKKMN 267 (363)
Q Consensus 260 a~~~~~~~ 267 (363)
+..+-...
T Consensus 147 stsrlrta 154 (346)
T KOG0109|consen 147 STSRLRTA 154 (346)
T ss_pred eccccccC
Confidence 88776544
No 26
>KOG0124|consensus
Probab=99.87 E-value=2.7e-22 Score=180.15 Aligned_cols=164 Identities=21% Similarity=0.445 Sum_probs=143.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~ 180 (363)
-++||||.|.+++.|+.|+..|.+||+|++|.+-.|+.|+++||||||+|+-+|.|..|+ +|+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999 578999999999986544
Q ss_pred CCCCC--------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-
Q psy15045 181 TKIGT--------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ- 246 (363)
Q Consensus 181 ~~~~~--------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~- 246 (363)
-.+.. +...-.+|||..+.++++++||+.+|+.||+|++|.+-++ .+||+|++|.+..+...|+..
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 33221 1122579999999999999999999999999999999865 689999999999999899987
Q ss_pred -CCeeCCeEEEEEEccCCCcc
Q psy15045 247 -HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 -~~~~~g~~l~V~~a~~~~~~ 266 (363)
...++|..|+|-.+......
T Consensus 273 NlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred chhhcccceEecccccCCCch
Confidence 45789999999887665443
No 27
>KOG0144|consensus
Probab=99.87 E-value=6.9e-22 Score=181.21 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=168.1
Q ss_pred eceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccccCCCCC-------------CCCCCCCCCeEEEcCCCCCCC
Q psy15045 50 ESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYP-------------DNSGPVQNTDLVVLGIPWTFT 116 (363)
Q Consensus 50 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~V~nLp~~~t 116 (363)
.+.+--|.+++|+.+..+.|+.+..|+...++..+-.+....+..| ......+.++|||+-|++.++
T Consensus 58 yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t 137 (510)
T KOG0144|consen 58 YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT 137 (510)
T ss_pred hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhcccccc
Confidence 4445556788888888888888777766553333322222222211 111224588999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc---ccccCC--eeeeEecccCCCCCC------
Q psy15045 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK---KHKIGN--RICDVRIPESTKIGT------ 185 (363)
Q Consensus 117 e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~---~~~~~g--~~i~v~~a~~~~~~~------ 185 (363)
|.+++++|++||.|++|.|++| ..+.+||||||.|.+.|.|..||+. .+.+.| .+|.|+||++++.+.
T Consensus 138 e~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq 216 (510)
T KOG0144|consen 138 ENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQ 216 (510)
T ss_pred HHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHh
Confidence 9999999999999999999999 5899999999999999999999953 345655 689999998875210
Q ss_pred --------------------------------------------------------------------------------
Q psy15045 186 -------------------------------------------------------------------------------- 185 (363)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (363)
T Consensus 217 ~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~ 296 (510)
T KOG0144|consen 217 LNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQG 296 (510)
T ss_pred hhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy15045 186 -------------------------------------------------------------------------------- 185 (363)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (363)
T Consensus 297 ~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~ 376 (510)
T KOG0144|consen 297 LPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFA 376 (510)
T ss_pred CccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChh
Confidence
Q ss_pred -------------------------------------------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEe
Q psy15045 186 -------------------------------------------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI 222 (363)
Q Consensus 186 -------------------------------------------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i 222 (363)
+-+....|||.+||.+.-+.+|-..|..||.|.+.++
T Consensus 377 ~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakv 456 (510)
T KOG0144|consen 377 GAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKV 456 (510)
T ss_pred hhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEE
Confidence 0022568999999999999999999999999998877
Q ss_pred cCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 223 PKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 223 ~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
.-| ++.|+||.|++..+|..||.. +..|+.++++|-....+..
T Consensus 457 fidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 457 FIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred EEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 654 789999999999999999998 7799999999987665543
No 28
>KOG0123|consensus
Probab=99.86 E-value=6.6e-21 Score=180.27 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=136.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~~ 181 (363)
..|||| +++||..|.++|+++|+|.++++.+|. | +.|||||.|.++++|.+||. |...+.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999996 5 99999999999999999994 567899999999998766
Q ss_pred CCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 182 ~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
.. .|||.||+++++..+|.++|+.||.|++|++..+ ++|| ||+|++.++|++|+.. +..+.|++|.
T Consensus 76 ~~--------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PS--------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cc--------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 33 2999999999999999999999999999999876 7899 9999999999999998 7789999999
Q ss_pred EEEccCCCccc
Q psy15045 257 VMEATPKKKMN 267 (363)
Q Consensus 257 V~~a~~~~~~~ 267 (363)
|.....+.++.
T Consensus 147 vg~~~~~~er~ 157 (369)
T KOG0123|consen 147 VGLFERKEERE 157 (369)
T ss_pred Eeeccchhhhc
Confidence 99988887765
No 29
>KOG0123|consensus
Probab=99.84 E-value=3.1e-20 Score=175.70 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=167.2
Q ss_pred eeeeceeeeeeeccCcCCCCCCCCCCcceeecc-CCCCCCcccccCCCCCCC-------CCCCCCCeEEEcCCCCCCCHH
Q psy15045 47 YKVESRYRAVKLADGHLYAPLDGWQDRVYYCTF-DASGNSSATQSKRSYPDN-------SGPVQNTDLVVLGIPWTFTDN 118 (363)
Q Consensus 47 ~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~V~nLp~~~te~ 118 (363)
|...++.-+++++++. + +.||+ |++| +..++++|.+......-. -...+...|||.||+++++..
T Consensus 19 f~~~~~v~s~rvc~d~-t--slgy~----yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~ 91 (369)
T KOG0123|consen 19 FSPAGPVLSIRVCRDA-T--SLGYA----YVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNK 91 (369)
T ss_pred hcccCCceeEEEeecC-C--ccceE----EEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcH
Confidence 4446777889999999 7 89999 7776 344445554432211100 001123339999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCCCCCC-----CCCCcc
Q psy15045 119 DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPESTKIGT-----EEPVAS 191 (363)
Q Consensus 119 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~~~~~-----~~~~~~ 191 (363)
.|.++|+.||+|++|++.++. .| ++|| ||+|.+.++|.+|| +++..+.++.|.|.....+.... ......
T Consensus 92 ~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t 168 (369)
T KOG0123|consen 92 SLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFT 168 (369)
T ss_pred HHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhh
Confidence 999999999999999999994 56 9999 99999999999999 46889999999998876654322 112256
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
.++|.+++.+++++.|..+|..+|.|..+.++++ +++|+||.|+++++|..|++. +..+.+..+.|..+..+.+
T Consensus 169 ~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 169 NVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred hhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchh
Confidence 8899999999999999999999999999999875 689999999999999999998 5677788999988887444
Q ss_pred c
Q psy15045 266 M 266 (363)
Q Consensus 266 ~ 266 (363)
+
T Consensus 249 ~ 249 (369)
T KOG0123|consen 249 R 249 (369)
T ss_pred h
Confidence 3
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=1.7e-19 Score=178.63 Aligned_cols=155 Identities=13% Similarity=0.173 Sum_probs=109.7
Q ss_pred CCCeeeeecccccCCCce-eeeeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC----------CcccccCCCC
Q psy15045 26 DDGTILLSTLQAQYPSAI-GLKYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN----------SSATQSKRSY 94 (363)
Q Consensus 26 ~~~~~~l~~l~~~~~~~~-~l~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~ 94 (363)
..+++++++|........ .-.|...+.+..++++.+..+..+.||++..|....++..+ ++.+...+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 345778888765555221 11233366677788888888888888885554433211111 1111111110
Q ss_pred CC----------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--
Q psy15045 95 PD----------NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-- 162 (363)
Q Consensus 95 ~~----------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-- 162 (363)
.. .......++|||+|||+++++++|+++|+.||+|.+++|++++.++.++|||||+|.+.++|.+||
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 00 011124579999999999999999999999999999999999989999999999999999999999
Q ss_pred hcccccCCeeeeEecccC
Q psy15045 163 LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 163 ~~~~~~~g~~i~v~~a~~ 180 (363)
+|+..++|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 578899999999977653
No 31
>KOG0110|consensus
Probab=99.83 E-value=2.8e-20 Score=180.35 Aligned_cols=165 Identities=25% Similarity=0.407 Sum_probs=141.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT---GRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
.++|||.||+++++.++|...|.+.|.|.++.|...+.. -.|.|||||+|.+.++|..|+. +++.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765432 1466999999999999999994 58999999999999
Q ss_pred ccCCC------CCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc
Q psy15045 178 PESTK------IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 178 a~~~~------~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~ 246 (363)
+..+. ........++|+|.|||...+..+++.+|..||.|.+|+|++. .+|||||+|-++.+|..|+.+
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 88222 1122223579999999999999999999999999999999975 689999999999999999987
Q ss_pred --CCeeCCeEEEEEEccCCCccc
Q psy15045 247 --HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 247 --~~~~~g~~l~V~~a~~~~~~~ 267 (363)
...+.||.|.+.||......+
T Consensus 675 l~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred hcccceechhhheehhccchHHH
Confidence 568999999999998876543
No 32
>KOG0147|consensus
Probab=99.81 E-value=3.1e-20 Score=175.64 Aligned_cols=247 Identities=18% Similarity=0.202 Sum_probs=179.0
Q ss_pred CcccccccCCCCeeeeecccccCCCceeeeeee-eceeeeeeeccCcCCCCCCCCCCcceeeccCCC-------------
Q psy15045 17 EDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKV-ESRYRAVKLADGHLYAPLDGWQDRVYYCTFDAS------------- 82 (363)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------- 82 (363)
..++..+..+..|++.-.+....+.-.-..|.. .++++.|+++.++.+..++|.+...|+-.....
T Consensus 169 ~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~ 248 (549)
T KOG0147|consen 169 SRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGV 248 (549)
T ss_pred cccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCc
Confidence 355666677777888888877676443444444 899999999999999999998855544222000
Q ss_pred -------CCCcccccCCCCCCC--CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeC
Q psy15045 83 -------GNSSATQSKRSYPDN--SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153 (363)
Q Consensus 83 -------~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 153 (363)
.+++......+.... .-..+-..|||+||..++++++|+.+|++||.|+.|.+++|..||.++||+||+|.
T Consensus 249 pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred eeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 000000000000000 00112334999999999999999999999999999999999889999999999999
Q ss_pred CHHHHHHHH--hcccccCCeeeeEecccCCCCC-----------------------------------------------
Q psy15045 154 SHESALKAM--LKKHKIGNRICDVRIPESTKIG----------------------------------------------- 184 (363)
Q Consensus 154 ~~~~a~~al--~~~~~~~g~~i~v~~a~~~~~~----------------------------------------------- 184 (363)
+.++|.+|+ +|+.+|.|+.|+|..-......
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~ 408 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISA 408 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhH
Confidence 999999998 5788999999998542111000
Q ss_pred ----------------------CCC-------CCcceEEEcCCCcC--CC--------HHHHHHHhhcCCCeEEEEecCC
Q psy15045 185 ----------------------TEE-------PVASKVFVGSLTPD--LT--------ESDLREHFEYYGAVVDVLIPKP 225 (363)
Q Consensus 185 ----------------------~~~-------~~~~~l~V~nlp~~--~t--------~e~L~~~F~~~G~i~~i~i~~~ 225 (363)
... .++.++.+.|+=.. .| .+|+.+.+++||.|..|.+.+.
T Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n 488 (549)
T KOG0147|consen 409 LLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN 488 (549)
T ss_pred HHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC
Confidence 000 11345556665222 22 2889999999999999999999
Q ss_pred CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 226 FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 226 ~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
+-|+.||.|.+.++|..|+.+ +.+|.|+.|.+.|-...
T Consensus 489 s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 489 SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 889999999999999999998 67999999999986543
No 33
>KOG0146|consensus
Probab=99.81 E-value=1e-19 Score=157.49 Aligned_cols=164 Identities=24% Similarity=0.382 Sum_probs=141.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc---ccccCC--eeeeEe
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK---KHKIGN--RICDVR 176 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~---~~~~~g--~~i~v~ 176 (363)
+.++|||+-|.+.-+|+|++.+|.+||.|++|.+.+.+ .|.+||||||.|.+..+|..||.. ...+.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999985 799999999999999999999953 234555 568888
Q ss_pred cccCCCCC------------------------------------------------------------------------
Q psy15045 177 IPESTKIG------------------------------------------------------------------------ 184 (363)
Q Consensus 177 ~a~~~~~~------------------------------------------------------------------------ 184 (363)
+++..+.+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 88765311
Q ss_pred --------------------------------------------------------------------------------
Q psy15045 185 -------------------------------------------------------------------------------- 184 (363)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (363)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred -----------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecC
Q psy15045 185 -----------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFEL 236 (363)
Q Consensus 185 -----------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~ 236 (363)
.+-+..++|||..||.++.+.+|...|-+||.|++.+++-| +|.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00023789999999999999999999999999999888755 89999999999
Q ss_pred HHHHHHHHhc--CCeeCCeEEEEEEccCCCcc
Q psy15045 237 DSVAKSLIGQ--HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 237 ~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~ 266 (363)
+.+|++||.+ +.+|+-++|+|...+|+...
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999998 78999999999888887643
No 34
>KOG0105|consensus
Probab=99.80 E-value=3.2e-18 Score=140.75 Aligned_cols=140 Identities=16% Similarity=0.271 Sum_probs=120.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
.+++|||+|||.++-+.+|+++|.+||.|..|.|...+ ..-.||||+|+++.+|+.||. ++..++|..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 57899999999999999999999999999999885432 235799999999999999994 6899999999999987
Q ss_pred CCCCC-----------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecC
Q psy15045 180 STKIG-----------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236 (363)
Q Consensus 180 ~~~~~-----------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~ 236 (363)
.-... +.......+.|.+||++-+|+||+++..+-|.|....+.+| +.+.|+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r 159 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLR 159 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeee
Confidence 55311 11112468999999999999999999999999999999987 589999999
Q ss_pred HHHHHHHHhc
Q psy15045 237 DSVAKSLIGQ 246 (363)
Q Consensus 237 ~~~A~~Ai~~ 246 (363)
.|+.+-|+.+
T Consensus 160 ~eDMkYAvr~ 169 (241)
T KOG0105|consen 160 KEDMKYAVRK 169 (241)
T ss_pred hhhHHHHHHh
Confidence 9999999987
No 35
>KOG0148|consensus
Probab=99.78 E-value=1.2e-18 Score=151.36 Aligned_cols=133 Identities=24% Similarity=0.321 Sum_probs=113.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEeccc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~ 179 (363)
+...++|||+||+..+||+-|..||++.|.|++++|+.+ .++|.|+.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 346789999999999999999999999999999999876 35566655
Q ss_pred CCCCCCCCCC--cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCee
Q psy15045 180 STKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNI 250 (363)
Q Consensus 180 ~~~~~~~~~~--~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~ 250 (363)
.....+.... ---+||+.|...++-|+|++.|.+||+|.+++|++| +|||+||.|-+.++|+.||.. +..|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 4422211111 346899999999999999999999999999999987 899999999999999999998 7799
Q ss_pred CCeEEEEEEccCCCc
Q psy15045 251 KDKKVVVMEATPKKK 265 (363)
Q Consensus 251 ~g~~l~V~~a~~~~~ 265 (363)
++|.|+..||..+..
T Consensus 130 G~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPS 144 (321)
T ss_pred ccceeeccccccCcc
Confidence 999999999988763
No 36
>KOG0147|consensus
Probab=99.73 E-value=4.9e-18 Score=160.85 Aligned_cols=168 Identities=23% Similarity=0.369 Sum_probs=147.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
..+++|+--|+..++.-+|.++|+.+|+|..|+++.|+.++.++|.|||+|.+.++...|| +.+..+.|.+|.|+....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHH
Confidence 5688999999999999999999999999999999999999999999999999999999998 679999999999988655
Q ss_pred CCCCC-----------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHH
Q psy15045 181 TKIGT-----------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244 (363)
Q Consensus 181 ~~~~~-----------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai 244 (363)
.+... -..+...|||+||...+++++|+.+|++||.|..|.+.+| ++||+||+|.+.++|++|+
T Consensus 258 eknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred HHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHH
Confidence 43210 0111234999999999999999999999999999999887 6899999999999999998
Q ss_pred hc--CCeeCCeEEEEEEccCCCccccc
Q psy15045 245 GQ--HVNIKDKKVVVMEATPKKKMNER 269 (363)
Q Consensus 245 ~~--~~~~~g~~l~V~~a~~~~~~~~~ 269 (363)
++ +..|.|+.|+|.....+-..+..
T Consensus 338 e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 338 EQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred HHhccceecCceEEEEEeeeecccccc
Confidence 87 78999999999987776665533
No 37
>KOG4206|consensus
Probab=99.72 E-value=3.3e-16 Score=133.73 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=131.4
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEe
Q psy15045 103 NTDLVVLGIPWTFTDNDLKE----YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVR 176 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~ 176 (363)
..||||.||+..+..++|+. +|++||+|..|...+ +.+.||-|||.|.+.+.|..|+ +++..+.|+.++|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999998888 999999999888764 5788999999999999999999 46888999999999
Q ss_pred cccCCCCC-----------------------------------------------CCCCCcceEEEcCCCcCCCHHHHHH
Q psy15045 177 IPESTKIG-----------------------------------------------TEEPVASKVFVGSLTPDLTESDLRE 209 (363)
Q Consensus 177 ~a~~~~~~-----------------------------------------------~~~~~~~~l~V~nlp~~~t~e~L~~ 209 (363)
+|..+... ...++...||+.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98765310 1134467899999999999999999
Q ss_pred HhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeC-CeEEEEEEcc
Q psy15045 210 HFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIK-DKKVVVMEAT 261 (363)
Q Consensus 210 ~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~-g~~l~V~~a~ 261 (363)
+|.+|.....|+++....+.|||+|.+...|..|... +..|- ...+.|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999987789999999999888888876 33333 6677777654
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.2e-16 Score=132.19 Aligned_cols=82 Identities=32% Similarity=0.584 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
..+++|||+|||+++++++|+++|++||+|.+|.|+.|+.+++++|||||+|.+.++|++|+. +++.|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 357799999999999999999999999999999999999999999999999999999999994 688999999999998
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7653
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.6e-16 Score=131.44 Aligned_cols=77 Identities=26% Similarity=0.479 Sum_probs=70.2
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
.+++|||+|||+.+++++|+++|++||.|.+|.|+.+ +++||||+|++.++|++|++. ++.|+|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3579999999999999999999999999999999865 589999999999999999986 789999999999987
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
++..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 7543
No 40
>KOG4211|consensus
Probab=99.70 E-value=1.6e-15 Score=142.10 Aligned_cols=162 Identities=25% Similarity=0.420 Sum_probs=128.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~ 180 (363)
...-|-+++|||++|+++|+++|+.++ |+++.+.+ .+|+..|-|||+|.+.+++++|+++ ...+..+-|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 455677899999999999999999985 78866665 4799999999999999999999965 4556778888877654
Q ss_pred CCCC--------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE-EEecCC----CCcEEEEEecCHHHHHHHHhc-
Q psy15045 181 TKIG--------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-VLIPKP----FREFAFVTFELDSVAKSLIGQ- 246 (363)
Q Consensus 181 ~~~~--------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~-i~i~~~----~~g~afV~F~~~~~A~~Ai~~- 246 (363)
.... ........|-+.+||+++|++||.++|+..-.|.. |.++.+ +.|-|||+|++.+.|++|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 4311 11123568999999999999999999997766555 444433 568899999999999999998
Q ss_pred CCeeCCeEEEEEEccCCCcc
Q psy15045 247 HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 ~~~~~g~~l~V~~a~~~~~~ 266 (363)
...|+-+-|.|..+.-.+.+
T Consensus 166 re~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHhhccceEEeehhHHHHHH
Confidence 56788888988776654433
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=9.4e-16 Score=144.48 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=112.2
Q ss_pred CCCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC----------CcccccCCCC
Q psy15045 26 DDGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN----------SSATQSKRSY 94 (363)
Q Consensus 26 ~~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~ 94 (363)
...+|+++.|.....+.... .|...+.+..++++.+..+..+.|+++..|....++..+ .+.+....+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 45578888887666633211 234467788889998888888889986555432211111 1111111111
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC--
Q psy15045 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN-- 170 (363)
Q Consensus 95 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g-- 170 (363)
+ .......++|||+|||.++++++|+++|++||+|..++|++++.+++++|||||+|.+.++|++||. ++..+.+
T Consensus 186 p-~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 186 P-GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred c-cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 1 1123356789999999999999999999999999999999998899999999999999999999994 5666665
Q ss_pred eeeeEecccCC
Q psy15045 171 RICDVRIPEST 181 (363)
Q Consensus 171 ~~i~v~~a~~~ 181 (363)
+.|.|.++...
T Consensus 265 ~~l~V~~a~~~ 275 (346)
T TIGR01659 265 QPLTVRLAEEH 275 (346)
T ss_pred eeEEEEECCcc
Confidence 67888887754
No 42
>KOG0149|consensus
Probab=99.65 E-value=3.3e-16 Score=134.03 Aligned_cols=80 Identities=38% Similarity=0.615 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~ 179 (363)
..-++||||+|+|++..+.|+++|++||+|++..|+.|+.+|+||||+||+|.+.++|.+|+++ ...|+||+..|.+|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 3568999999999999999999999999999999999999999999999999999999999987 668999999998876
Q ss_pred C
Q psy15045 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 43
>KOG0120|consensus
Probab=99.63 E-value=3.4e-15 Score=143.33 Aligned_cols=165 Identities=23% Similarity=0.356 Sum_probs=133.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+....++||++||..+++.++.++...||.+....++.+..+|.++||||.+|.+......|+ +++..+.++.|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 346778999999999999999999999999999999999999999999999999999999998 568889999999988
Q ss_pred ccCCCCCCC---------------------CCCcceEEEcCCC--cCC-C-------HHHHHHHhhcCCCeEEEEecCC-
Q psy15045 178 PESTKIGTE---------------------EPVASKVFVGSLT--PDL-T-------ESDLREHFEYYGAVVDVLIPKP- 225 (363)
Q Consensus 178 a~~~~~~~~---------------------~~~~~~l~V~nlp--~~~-t-------~e~L~~~F~~~G~i~~i~i~~~- 225 (363)
|........ ..++..|.+.|+= .++ + -|+++..|++||.|..|.++++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 765432110 0112233333321 111 1 1778888999999999999976
Q ss_pred -------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 226 -------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 226 -------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
.-|..||+|.+.+++++|.++ +.+|+|+.|..+|..+.+
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 457899999999999999998 789999999999977644
No 44
>KOG0106|consensus
Probab=99.61 E-value=3.1e-15 Score=129.13 Aligned_cols=145 Identities=23% Similarity=0.420 Sum_probs=123.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~ 181 (363)
..+||++||+.+.+.+|..+|..||.|..+.|. .||+||+|.+..+|..|+ +++..+.+..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999988875 469999999999999999 6788888888999998842
Q ss_pred CCC-----------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHH
Q psy15045 182 KIG-----------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244 (363)
Q Consensus 182 ~~~-----------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai 244 (363)
... ......+.+.|.+++..+.+.+|.++|.++|.+....+ ..+++||+|+..++|..|+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcc
Confidence 100 01122578899999999999999999999999976665 3789999999999999999
Q ss_pred hc--CCeeCCeEEEEEE
Q psy15045 245 GQ--HVNIKDKKVVVME 259 (363)
Q Consensus 245 ~~--~~~~~g~~l~V~~ 259 (363)
.. +..+.++.|.+..
T Consensus 151 ~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhccchhhcCceeeecc
Confidence 98 7799999999943
No 45
>KOG0124|consensus
Probab=99.59 E-value=3.7e-14 Score=128.10 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=97.2
Q ss_pred eceeeeeeeccCcCCCCCCCCCCcceeeccCCC----------CCCcccccCCCCCCCCC----------CCCCCeEEEc
Q psy15045 50 ESRYRAVKLADGHLYAPLDGWQDRVYYCTFDAS----------GNSSATQSKRSYPDNSG----------PVQNTDLVVL 109 (363)
Q Consensus 50 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----------~~~~~~l~V~ 109 (363)
.++..+|.+.=|..+..++||.+..|-+...+. ...+.++..+...-+.. ...-.+|||.
T Consensus 137 FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVa 216 (544)
T KOG0124|consen 137 FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVA 216 (544)
T ss_pred CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEee
Confidence 566667777778888888888866665544111 11333333222111111 1245789999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 110 nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.+.++++|++|+..|+.||+|.+|.+.+++..+.+|||+|++|.+..+...|| +|...+.|..|+|-.+
T Consensus 217 SvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 217 SVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred ecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 99999999999999999999999999999988899999999999999999999 5788899999988543
No 46
>KOG1548|consensus
Probab=99.55 E-value=2.7e-13 Score=122.05 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=135.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccC
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLE--------FANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIG 169 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~ 169 (363)
+...+.|||.|||.++|.+++.++|++||-|. .|+|.++ +.|..+|-|.+.|...+++..|+ ++...+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567799999999999999999999999875 4788888 56999999999999999999998 4678899
Q ss_pred CeeeeEecccCCCCC-----------------------------------CCCCCcceEEEcCCCcC----CC-------
Q psy15045 170 NRICDVRIPESTKIG-----------------------------------TEEPVASKVFVGSLTPD----LT------- 203 (363)
Q Consensus 170 g~~i~v~~a~~~~~~-----------------------------------~~~~~~~~l~V~nlp~~----~t------- 203 (363)
|+.|+|+.|.-.... ......++|.+.|+=.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999887643210 00112578888887321 22
Q ss_pred HHHHHHHhhcCCCeEEEEec-CCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCcc
Q psy15045 204 ESDLREHFEYYGAVVDVLIP-KPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 204 ~e~L~~~F~~~G~i~~i~i~-~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~ 266 (363)
+++|.+.+++||.|..|.|. +.+.|.+-|.|.+.++|..||+. +..|+||.|..+....+...
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 47888899999999999887 34789999999999999999998 78999999999887766544
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=4.4e-14 Score=101.91 Aligned_cols=68 Identities=37% Similarity=0.632 Sum_probs=63.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeee
Q psy15045 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICD 174 (363)
Q Consensus 106 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~ 174 (363)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|+. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 689999999999999999999994 58889998875
No 48
>KOG0110|consensus
Probab=99.54 E-value=5.1e-14 Score=137.25 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=122.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
..+.|+|+|||..+..++|..+|..||.|..+.|. + .|. -++|+|.++.+|.+|+. ....+...++.+.|+.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 45789999999999999999999999999988554 2 222 39999999999999984 3444555555555532
Q ss_pred CCCCC---------------------------------CCC--------------CCcceEEEcCCCcCCCHHHHHHHhh
Q psy15045 180 STKIG---------------------------------TEE--------------PVASKVFVGSLTPDLTESDLREHFE 212 (363)
Q Consensus 180 ~~~~~---------------------------------~~~--------------~~~~~l~V~nlp~~~t~e~L~~~F~ 212 (363)
..... ... ...++|||.||++++|.++|..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 11000 000 0123499999999999999999999
Q ss_pred cCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 213 YYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 213 ~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
+.|.|..+.|.+. +.|||||+|.+.++|++|+.. ++.|+|+.|.|+++.
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999988743 459999999999999999998 789999999999988
No 49
>KOG0122|consensus
Probab=99.53 E-value=3e-14 Score=122.57 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.+.++|-|.||+.+++|++|+++|.+||.|..|.|.+|+.||.+||||||.|.+.++|.+|| ++++-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999 5788899999999999
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
.++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 876
No 50
>KOG0131|consensus
Probab=99.53 E-value=6.2e-15 Score=121.37 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=130.4
Q ss_pred ccccCCCCeeeeecccccCCCceeeeeee---eceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC----------Ccc
Q psy15045 21 EIPSEDDGTILLSTLQAQYPSAIGLKYKV---ESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN----------SSA 87 (363)
Q Consensus 21 ~~~~~~~~~~~l~~l~~~~~~~~~l~~~~---~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~ 87 (363)
.++-+.+.|+++.+|....... +-|+. .++.-.+++.+++.+....||++..|....++..+ .+.
T Consensus 3 ~~~rnqd~tiyvgnld~kvs~~--~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 3 IIERNQDATLYVGNLDEKVSEE--LLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred ccccCCCceEEEecCCHHHHHH--HHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 4566788899999998777744 33333 67777788899999999999998888776655544 444
Q ss_pred cccCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCceeEEEEEeCCHHHHHHHH--hc
Q psy15045 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF-ANVKVDKNTGRSKGFGFIRFSSHESALKAM--LK 164 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~ 164 (363)
+...++.........+.+|||+||.++++|..|.++|+.||.+.. -++++++.||.++|||||.|.+.+.+.+|+ ++
T Consensus 81 Irv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 81 IRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred eEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 555555544444556789999999999999999999999999765 488999999999999999999999999999 56
Q ss_pred ccccCCeeeeEecccCCCCC
Q psy15045 165 KHKIGNRICDVRIPESTKIG 184 (363)
Q Consensus 165 ~~~~~g~~i~v~~a~~~~~~ 184 (363)
+..++.+++.|.++..+...
T Consensus 161 gq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cchhcCCceEEEEEEecCCC
Confidence 88999999999998776543
No 51
>KOG1456|consensus
Probab=99.51 E-value=2.4e-12 Score=116.85 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=127.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH----hcccccCCeee
Q psy15045 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM----LKKHKIGNRIC 173 (363)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al----~~~~~~~g~~i 173 (363)
..+..+-.|.|++|-..++|.+|.+.++.||.|..+.++.. +..|.|+|++.+.|+.++ .+...+.|+.-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 33446678999999999999999999999999988877654 458999999999999988 34567788777
Q ss_pred eEecccCCCC----CCCCCCcceEEEc--CCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-
Q psy15045 174 DVRIPESTKI----GTEEPVASKVFVG--SLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ- 246 (363)
Q Consensus 174 ~v~~a~~~~~----~~~~~~~~~l~V~--nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~- 246 (363)
-+.++.++.- .....+++.|.+. |--..+|-+-|..++.+.|.|.+|.|++..--.|.|+|++.+.|++|..+
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhc
Confidence 7777644421 1112224455544 44457899999999999999999999988566799999999999999987
Q ss_pred -C--CeeCCeEEEEEEccCCCcc
Q psy15045 247 -H--VNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 -~--~~~~g~~l~V~~a~~~~~~ 266 (363)
+ ..-+-++|+|.||+|..-.
T Consensus 180 NGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccccccccceeEEEEecCcceee
Confidence 3 3445569999999996543
No 52
>KOG1457|consensus
Probab=99.50 E-value=2.7e-13 Score=115.11 Aligned_cols=147 Identities=24% Similarity=0.329 Sum_probs=114.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEe-cCCCCCceeEEEEEeCCHHHHHHHH--hcccccC---Ceee
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV-DKNTGRSKGFGFIRFSSHESALKAM--LKKHKIG---NRIC 173 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~---g~~i 173 (363)
+...+||||.+||.++...+|..+|..|--.+.+.|.. ++....++-+|||+|.+..+|.+|+ +|+..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 45689999999999999999999999985555555433 3333346689999999999999998 4677665 5778
Q ss_pred eEecccCCCCCCCC------------------------------------------------------------------
Q psy15045 174 DVRIPESTKIGTEE------------------------------------------------------------------ 187 (363)
Q Consensus 174 ~v~~a~~~~~~~~~------------------------------------------------------------------ 187 (363)
+++++++..+....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 88877654210000
Q ss_pred -----------------CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-CCcEEEEEecCHHHHHHHHhc
Q psy15045 188 -----------------PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 188 -----------------~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-~~g~afV~F~~~~~A~~Ai~~ 246 (363)
....+|||.||..+++|++|+.+|+.|-....++|... ....||++|++.+.|..|+..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHH
Confidence 00348999999999999999999999988777777533 456899999999999999886
No 53
>KOG1190|consensus
Probab=99.50 E-value=6.6e-13 Score=121.83 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=128.4
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 103 NTDLVVLGIP-WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 103 ~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
...|.|.||. ..+|.+.|..+|.-||.|..|+|..++ +--|+|+|.+...|..|+ ++++.+.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5789999995 568999999999999999999999875 357999999999999999 57999999999999877
Q ss_pred CCCCC--------------------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCe-EEEEecCCC
Q psy15045 180 STKIG--------------------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAV-VDVLIPKPF 226 (363)
Q Consensus 180 ~~~~~--------------------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i-~~i~i~~~~ 226 (363)
...-. .--+++.+|.+.|+|.+++||+|+.+|..-|.. +..++....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd 451 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD 451 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC
Confidence 65311 011346799999999999999999999888875 444555445
Q ss_pred CcEEEEEecCHHHHHHHHhc--CCeeCCe-EEEEEEccC
Q psy15045 227 REFAFVTFELDSVAKSLIGQ--HVNIKDK-KVVVMEATP 262 (363)
Q Consensus 227 ~g~afV~F~~~~~A~~Ai~~--~~~~~g~-~l~V~~a~~ 262 (363)
+.+|++.+++.|.|..|+.. .+.++.. .|+|+|++.
T Consensus 452 ~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 452 RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 78999999999999999887 4566654 899999764
No 54
>KOG0121|consensus
Probab=99.48 E-value=8.2e-14 Score=108.21 Aligned_cols=79 Identities=16% Similarity=0.327 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
.+++|||+||+..++|++|.++|+++|+|..|.|-.|+.+....|||||+|.+.++|..|+ .+++.++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 6789999999999999999999999999999999999999999999999999999999999 47899999999998854
Q ss_pred C
Q psy15045 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 55
>KOG4212|consensus
Probab=99.47 E-value=1.4e-12 Score=120.53 Aligned_cols=157 Identities=23% Similarity=0.409 Sum_probs=126.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFE-QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
..+.+||.|||+++.-++|+++|. +-|+|+.|.+..| .+|++||+|.|+|+++|.+++|+ ++.+.+.|++|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456699999999999999999998 6799999999999 69999999999999999999999 4688999999999653
Q ss_pred cCCCCC--------------------------------------------------------------------------
Q psy15045 179 ESTKIG-------------------------------------------------------------------------- 184 (363)
Q Consensus 179 ~~~~~~-------------------------------------------------------------------------- 184 (363)
......
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 221000
Q ss_pred --------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCee
Q psy15045 185 --------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNI 250 (363)
Q Consensus 185 --------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~ 250 (363)
-..|...++||.||...+....|++.|.-.|.|..|.+--+ ++|||.++|+++-.|-.||.. ..-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 00122468899999999999999999999999998876533 789999999999999888886 2233
Q ss_pred CCeEEEEEE
Q psy15045 251 KDKKVVVME 259 (363)
Q Consensus 251 ~g~~l~V~~ 259 (363)
..++..+..
T Consensus 282 ~~~~~~~Rl 290 (608)
T KOG4212|consen 282 FDRRMTVRL 290 (608)
T ss_pred ccccceeec
Confidence 444555544
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.9e-13 Score=119.16 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccCC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~~ 181 (363)
.++|||+|||+.+++++|+++|+.||+|.+|.|+.++. ++|||||+|.+.++|+.|| +++..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998853 4799999999999999999 5789999999999998654
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=119.80 Aligned_cols=123 Identities=29% Similarity=0.513 Sum_probs=106.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~ 180 (363)
.++|||+|||.++++++|.++|.+||.|..+.+..++.++.++|||||+|.+.++|..|+. ++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998899999999999999999999994 47899999999999542
Q ss_pred ----CCCCC-----------------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC
Q psy15045 181 ----TKIGT-----------------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225 (363)
Q Consensus 181 ----~~~~~-----------------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~ 225 (363)
..... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 21111 0112578899999999999999999999999977776543
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4.9e-13 Score=96.69 Aligned_cols=68 Identities=32% Similarity=0.620 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeee
Q psy15045 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICD 174 (363)
Q Consensus 106 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~ 174 (363)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|+. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 9999999999999999999994 35789998874
No 59
>KOG0107|consensus
Probab=99.45 E-value=2.3e-13 Score=111.53 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
-.++|||+||+..+++.||+.+|..||+|.+|.|.+.| .|||||+|+++.+|+.|+ +++..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46899999999999999999999999999999998876 799999999999999999 68999999999999987
Q ss_pred CCCC
Q psy15045 180 STKI 183 (363)
Q Consensus 180 ~~~~ 183 (363)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7643
No 60
>KOG0149|consensus
Probab=99.44 E-value=1.6e-13 Score=117.66 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=68.3
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
.-++|||++|+|.++.|.|+++|++||+|+++.|+.| +|||+||+|.+.++|.+|++. ...|+||+..|.+|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3579999999999999999999999999999988865 899999999999999999999 7799999999988765
No 61
>KOG0113|consensus
Probab=99.43 E-value=5e-13 Score=118.14 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
++-+||||+-|+++++|.+|+..|+.||+|+.|.|++|+.||+++|||||+|++..+...|.+ .+..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 467999999999999999999999999999999999999999999999999999999999995 488999999999987
Q ss_pred cCCCC
Q psy15045 179 ESTKI 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.....
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 66543
No 62
>KOG0107|consensus
Probab=99.40 E-value=2.1e-12 Score=105.90 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=71.9
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~ 266 (363)
..++|||+||+..+++.+|+.+|..||.|..|-|-+.+.|||||+|+++.+|..|+.. +..|+|..|.|+++..+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence 3589999999999999999999999999999999888899999999999999999987 78999999999998776554
Q ss_pred c
Q psy15045 267 N 267 (363)
Q Consensus 267 ~ 267 (363)
.
T Consensus 89 ~ 89 (195)
T KOG0107|consen 89 S 89 (195)
T ss_pred c
Confidence 3
No 63
>KOG0105|consensus
Probab=99.40 E-value=1.7e-12 Score=107.22 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=66.9
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
+++|||+|||.++.+.+|+++|-+||.|..|.+... ...||||+|++..+|+.||.. +..++|+.|+|.|+..-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 579999999999999999999999999999988644 467999999999999999987 78999999999996543
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=9.2e-13 Score=94.93 Aligned_cols=64 Identities=30% Similarity=0.623 Sum_probs=59.4
Q ss_pred EEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 193 l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
|||+|||+.+|+++|+++|++||.|..+.+..+ .+++|||+|++.++|.+|++. +..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999998864 678999999999999999996 7899999885
No 65
>KOG0125|consensus
Probab=99.39 E-value=1.7e-12 Score=116.20 Aligned_cols=83 Identities=29% Similarity=0.439 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeE
Q psy15045 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDV 175 (363)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v 175 (363)
+.+...++|+|.|||+..-|-||+.+|.+||+|.+|.|+.+ ..-||||+||+|++.++|++|- +++..+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34556789999999999999999999999999999999986 4557999999999999999998 4688999999999
Q ss_pred ecccCCC
Q psy15045 176 RIPESTK 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
..+..+-
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9987663
No 66
>KOG0125|consensus
Probab=99.39 E-value=9.4e-13 Score=117.77 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=81.6
Q ss_pred ccccCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHH
Q psy15045 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAK 241 (363)
Q Consensus 165 ~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~ 241 (363)
+...+|..+.+..+.... .....++|+|+|||+...+.||+.+|++||.|.+|+|+-+ +|||+||+|++.++|.
T Consensus 74 ~~~t~g~~~~~~~st~s~---s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 74 GAPTDGQPIQTQPSTNSS---SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCCCCccccCCCCcCC---CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHH
Confidence 344556655555443332 2233589999999999999999999999999999998843 8999999999999999
Q ss_pred HHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 242 SLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 242 ~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
+|.++ +..+.||+|.|..|..+-..+
T Consensus 151 RARa~LHgt~VEGRkIEVn~ATarV~n~ 178 (376)
T KOG0125|consen 151 RARAELHGTVVEGRKIEVNNATARVHNK 178 (376)
T ss_pred HHHHHhhcceeeceEEEEeccchhhccC
Confidence 99998 779999999999999875443
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.2e-12 Score=114.45 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=68.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+ .++||||+|.+.++|..|+.. +..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 378999999999999999999999999999999876 579999999999999999987 78999999999986654
No 68
>KOG0121|consensus
Probab=99.36 E-value=1.9e-12 Score=100.68 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=66.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
+++|||+||+..++||+|.++|+++|+|..|.+--| +-|||||+|.+.++|..|+.- +..++.++|.|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 589999999999999999999999999999988644 679999999999999999997 7899999999988544
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.7e-12 Score=111.18 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
...+|||+||++.+|+++|+++|+.||+|.+|.|+++. .+++||||+|.++++|+.|+ +++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 46799999999999999999999999999999999883 45689999999999999999 689999999999977553
No 70
>KOG0129|consensus
Probab=99.35 E-value=2.6e-11 Score=114.97 Aligned_cols=161 Identities=25% Similarity=0.398 Sum_probs=114.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC-C--Ccee---EEEEEeCCHHHHHHHHhcccc-----
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT-G--RSKG---FGFIRFSSHESALKAMLKKHK----- 167 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g--~~~G---~afV~f~~~~~a~~al~~~~~----- 167 (363)
.+.-+++||||+||++++|++|...|..||.+. |......+. + ..+| |+|+.|+++.+....|..-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 355689999999999999999999999999863 555432111 1 2456 999999999888776632111
Q ss_pred --------cCCeeeeEe---cccCCC---CCCCCCCcceEEEcCCCcCCCHHHHHHHhh-cCCCeEEEEecCC-----CC
Q psy15045 168 --------IGNRICDVR---IPESTK---IGTEEPVASKVFVGSLTPDLTESDLREHFE-YYGAVVDVLIPKP-----FR 227 (363)
Q Consensus 168 --------~~g~~i~v~---~a~~~~---~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~-~~G~i~~i~i~~~-----~~ 227 (363)
+..+.+.|. +++... ......+.++||||+||--++.++|..+|+ -||.|..+-|..| ++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 111212221 111111 112234478999999999999999999997 8999999988766 78
Q ss_pred cEEEEEecCHHHHHHHHhc-CCeeC----CeEEEEEEc
Q psy15045 228 EFAFVTFELDSVAKSLIGQ-HVNIK----DKKVVVMEA 260 (363)
Q Consensus 228 g~afV~F~~~~~A~~Ai~~-~~~~~----g~~l~V~~a 260 (363)
|-|-|+|.+..+-.+||.+ -.+|+ .++|.|+-.
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 9999999999999999998 22332 346666543
No 71
>KOG0126|consensus
Probab=99.34 E-value=1.5e-13 Score=113.19 Aligned_cols=79 Identities=29% Similarity=0.468 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
++.-|||||||+++||.+|...|++||+|..|.+++|+.||+|+||||+-|++..+...|+. |+..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56689999999999999999999999999999999999999999999999999999999994 5889999999997754
Q ss_pred C
Q psy15045 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 72
>KOG4207|consensus
Probab=99.34 E-value=1.7e-12 Score=109.06 Aligned_cols=81 Identities=25% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
....+|-|-||.+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+ +++..|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34678999999999999999999999999999999999999999999999999999999999 5689999999999998
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 754
No 73
>KOG0111|consensus
Probab=99.33 E-value=8.5e-13 Score=111.77 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
..++|||++|..+++|.-|...|-+||.|..|.++.|-.++++||||||+|...|+|.+||. +..++.|+.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 57899999999999999999999999999999999999999999999999999999999995 4778999999999999
Q ss_pred CCCCC
Q psy15045 180 STKIG 184 (363)
Q Consensus 180 ~~~~~ 184 (363)
+.+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87543
No 74
>KOG4205|consensus
Probab=99.33 E-value=5e-12 Score=116.10 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=134.1
Q ss_pred CCCeeeeecccccCC-CceeeeeeeeceeeeeeeccCcCCCCCCCCCCcceeecc---------CCCCCCcccccCCCCC
Q psy15045 26 DDGTILLSTLQAQYP-SAIGLKYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTF---------DASGNSSATQSKRSYP 95 (363)
Q Consensus 26 ~~~~~~l~~l~~~~~-~~~~l~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 95 (363)
+.+++++..|.+.-. +.....|.+-+...-+.++++..+.++.|+++..|-... ......+.++++++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 455666666655554 222222333555566677888888888888865554111 1223345566667666
Q ss_pred CCCCCC-----CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccC
Q psy15045 96 DNSGPV-----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIG 169 (363)
Q Consensus 96 ~~~~~~-----~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~ 169 (363)
+..... ...+|||++||.++++++|+++|.+||.|..+.++.|..+.+.+||+||+|.+.+++++++. .-|.|+
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 554332 35599999999999999999999999999999999999999999999999999999999985 488999
Q ss_pred CeeeeEecccCCCCCCCCCC--cceEEEcCCCcCCCHHHHHHHhhcCCCeE
Q psy15045 170 NRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVV 218 (363)
Q Consensus 170 g~~i~v~~a~~~~~~~~~~~--~~~l~V~nlp~~~t~e~L~~~F~~~G~i~ 218 (363)
++.+.|+.|.++........ .......++....+.-.|...|.-|+.+.
T Consensus 165 gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred CceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 99999999998864332211 11222224444445555666666666554
No 75
>KOG4211|consensus
Probab=99.31 E-value=2.6e-10 Score=107.55 Aligned_cols=158 Identities=24% Similarity=0.329 Sum_probs=114.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF-ANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a 178 (363)
.....|-+++||+.|++++|.++|+..-.+.. |.++.+ ..+++.|=|||.|++.++|+.||. +...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 34567888999999999999999997744444 456666 467789999999999999999994 455666666666332
Q ss_pred cCCC-------------------C----C---------------------------------------------------
Q psy15045 179 ESTK-------------------I----G--------------------------------------------------- 184 (363)
Q Consensus 179 ~~~~-------------------~----~--------------------------------------------------- 184 (363)
.... . .
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 1000 0 0
Q ss_pred -CC---------------CCCcceEEEcCCCcCCCHHHHHHHhhcCCCe-EEEEecCC--CCcEEEEEecCHHHHHHHHh
Q psy15045 185 -TE---------------EPVASKVFVGSLTPDLTESDLREHFEYYGAV-VDVLIPKP--FREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 185 -~~---------------~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i-~~i~i~~~--~~g~afV~F~~~~~A~~Ai~ 245 (363)
.. ......+...+||...++.++..+|+..-.+ +.|.+-.+ ..|-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 00 0002567889999999999999999876655 25555544 56889999999999999999
Q ss_pred c-CCeeCCeEEEEEE
Q psy15045 246 Q-HVNIKDKKVVVME 259 (363)
Q Consensus 246 ~-~~~~~g~~l~V~~ 259 (363)
+ ...+..+-|.+..
T Consensus 340 kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 340 KDGANMGHRYVELFL 354 (510)
T ss_pred cCCcccCcceeeecc
Confidence 8 4566666665544
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.7e-11 Score=87.98 Aligned_cols=70 Identities=41% Similarity=0.656 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
+|||+|||..+++++|+++|.+||+|..+.+..++ +.++|+|||+|.+.++|..|+. ++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999875 7788999999999999999994 4677888888763
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=1e-11 Score=116.45 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCH--HHHHHHH--hcccccCCeeeeEec
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH--ESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~--~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
...+||||||++.+++++|..+|..||.|.+|.|++ .+| ||||||+|.+. .++.+|| +++..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 457899999999999999999999999999999994 477 99999999987 6788899 579999999999998
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
|.+.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8765
No 78
>KOG4212|consensus
Probab=99.29 E-value=8.3e-11 Score=108.98 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=64.3
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.++|+|.|||.++||..|++-|..||.|.++.|+.+.+..+.|.|.++++|+.|+.. +..++|+.|.|.+.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 568999999999999999999999999999999766555669999999999999987 78999999999873
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.1e-11 Score=89.47 Aligned_cols=64 Identities=36% Similarity=0.553 Sum_probs=57.2
Q ss_pred EEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 193 l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
|||+|||+++++++|.++|+.||.|..+.+.++ ++++|||+|.+.++|.+|+.. +..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 479999999999999999998 4799999874
No 80
>KOG1190|consensus
Probab=99.27 E-value=1.5e-11 Score=112.94 Aligned_cols=156 Identities=12% Similarity=0.148 Sum_probs=119.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh---c-ccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML---K-KHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~---~-~~~~~g~~i~v~ 176 (363)
..++.|.++|||++++|++|.+++.+||+|..+.+.+.+ .-||++|.+.++|...+. . .-.+.+++|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 367889999999999999999999999999999987653 389999999999887442 1 234667778777
Q ss_pred cccCCCCC----------------------------C-CC--------CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE
Q psy15045 177 IPESTKIG----------------------------T-EE--------PVASKVFVGSLTPDLTESDLREHFEYYGAVVD 219 (363)
Q Consensus 177 ~a~~~~~~----------------------------~-~~--------~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~ 219 (363)
++....-. . .. ..--+++|.++-..++-+-|..+|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 75432100 0 00 01235678999999999999999999999998
Q ss_pred EEecCCCCcE-EEEEecCHHHHHHHHhc--CC-eeC-CeEEEEEEccC
Q psy15045 220 VLIPKPFREF-AFVTFELDSVAKSLIGQ--HV-NIK-DKKVVVMEATP 262 (363)
Q Consensus 220 i~i~~~~~g~-afV~F~~~~~A~~Ai~~--~~-~~~-g~~l~V~~a~~ 262 (363)
|.-+.+..+| |.|+|.+.+.|+.|... +. ..+ .+.|+|.|++-
T Consensus 180 IiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 180 IITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 8776655565 99999999999998887 22 223 34888888665
No 81
>KOG0130|consensus
Probab=99.26 E-value=1e-11 Score=97.45 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeE
Q psy15045 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDV 175 (363)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v 175 (363)
..++..--|||.++...++|++|.+.|..||+|+.+.+-.|+.||-.+|||+|+|++.+.|++|+ +|+..+.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33456778999999999999999999999999999999999999999999999999999999999 5788999999999
Q ss_pred ecccCCCC
Q psy15045 176 RIPESTKI 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.|+..+..
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99876643
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=3.3e-11 Score=86.07 Aligned_cols=69 Identities=38% Similarity=0.636 Sum_probs=62.2
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 108 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+. ++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999994 4567888887763
No 83
>KOG0113|consensus
Probab=99.24 E-value=1.7e-10 Score=102.24 Aligned_cols=80 Identities=23% Similarity=0.405 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.+-++|||+-|+.+++|.+|+.+|+.||.|+.|.|+++ ++|||||+|++..+..+|-+. +.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 44689999999999999999999999999999999976 899999999999999999987 88999999999987
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
..+....
T Consensus 179 RgRTvkg 185 (335)
T KOG0113|consen 179 RGRTVKG 185 (335)
T ss_pred ccccccc
Confidence 6665554
No 84
>KOG0114|consensus
Probab=99.24 E-value=5e-11 Score=89.39 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...+-|||+|||+++|.+++.++|.+||.|..|+|-.. ...+|.|||.|++..+|.+|+ +++..++++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 346778999999999999999999999999999998654 456899999999999999999 468889999999988
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6654
No 85
>KOG0122|consensus
Probab=99.24 E-value=2.7e-11 Score=104.49 Aligned_cols=75 Identities=29% Similarity=0.406 Sum_probs=69.1
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..++|-|.||+.++++++|+++|.+||.|..+.|.++ +||||||.|.+.++|.+||.. ++-++.-.|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 3578999999999999999999999999999999876 899999999999999999998 667777799999999
Q ss_pred CC
Q psy15045 262 PK 263 (363)
Q Consensus 262 ~~ 263 (363)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=5.9e-11 Score=103.73 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=68.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
..+|||+||++.+|+++|+++|+.||.|.+|.|+++ .++||||+|.+.++|..|+.. +..|.+++|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 478999999999999999999999999999999986 568999999999999999988 88999999999876653
No 87
>KOG4207|consensus
Probab=99.21 E-value=4.5e-11 Score=100.56 Aligned_cols=76 Identities=32% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.....|.|-||..-++.++|+.+|++||.|-+|.|++| ++|||||.|.+..+|+.|+++ +..|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34678999999999999999999999999999999976 899999999999999999998 78999999999887
Q ss_pred cCC
Q psy15045 261 TPK 263 (363)
Q Consensus 261 ~~~ 263 (363)
.=.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 643
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=4e-11 Score=112.60 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=68.3
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-CCcEEEEEecCH--HHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-FREFAFVTFELD--SVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-~~g~afV~F~~~--~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..+||||||++.+++++|+.+|+.||.|.+|.|++. .||||||+|.+. .++.+||.. +..+.|+.|+|..|++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 579999999999999999999999999999999965 699999999976 678999997 78999999999999884
No 89
>KOG0108|consensus
Probab=99.20 E-value=3.4e-11 Score=115.38 Aligned_cols=79 Identities=28% Similarity=0.479 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~ 181 (363)
+.|||||||++++|++|.++|+..|.|.+++++.|+.||+++||||++|.+.++|..|+ +++.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 4688999999999998755
Q ss_pred C
Q psy15045 182 K 182 (363)
Q Consensus 182 ~ 182 (363)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.19 E-value=1.3e-10 Score=83.19 Aligned_cols=67 Identities=39% Similarity=0.645 Sum_probs=60.8
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCC---CcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF---REFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~---~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
+|+|+|||..+++++|+++|++||.|..+.+..+. +++|||+|.+.++|+.|+.. +..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988763 69999999999999999987 578999998873
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=2.9e-10 Score=81.87 Aligned_cols=72 Identities=38% Similarity=0.621 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|+. ++..++++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988644 778999999999999999994 45668888888764
No 92
>KOG0114|consensus
Probab=99.16 E-value=2.3e-10 Score=85.88 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=71.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
++.|||.|||..+|.|+..++|.+||.|..|+|-.. -+|.|||-|++..+|.+|+.. +..++++.|.|-+..+...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 678999999999999999999999999999999743 689999999999999999998 7789999999999888665
Q ss_pred cc
Q psy15045 266 MN 267 (363)
Q Consensus 266 ~~ 267 (363)
.+
T Consensus 98 ~~ 99 (124)
T KOG0114|consen 98 FK 99 (124)
T ss_pred HH
Confidence 44
No 93
>KOG0116|consensus
Probab=99.14 E-value=3.4e-10 Score=107.91 Aligned_cols=74 Identities=30% Similarity=0.444 Sum_probs=64.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
...|||.|||.+++.++|+++|..||.|+...|... ...||||+|.+.++++.||++ ...|++++|.|....+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 346999999999999999999999999998776532 238999999999999999999 67999999999865553
No 94
>KOG0111|consensus
Probab=99.13 E-value=5.8e-11 Score=100.74 Aligned_cols=78 Identities=29% Similarity=0.465 Sum_probs=71.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.++|||++|..++++.-|...|-+||.|+.|.++-| .||||||+|+..|+|.+||.. ..+|.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 479999999999999999999999999999999866 689999999999999999998 5799999999999999
Q ss_pred CCccc
Q psy15045 263 KKKMN 267 (363)
Q Consensus 263 ~~~~~ 267 (363)
.+-..
T Consensus 90 ~kike 94 (298)
T KOG0111|consen 90 EKIKE 94 (298)
T ss_pred ccccC
Confidence 76443
No 95
>KOG0415|consensus
Probab=99.13 E-value=9.9e-11 Score=105.82 Aligned_cols=86 Identities=29% Similarity=0.382 Sum_probs=77.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeee
Q psy15045 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRIC 173 (363)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i 173 (363)
.....++.+.|||..|.+-+++++|.-+|+.||+|.+|.|++|..||.+..||||+|.+.+++++|. +....|+.++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 3344557889999999999999999999999999999999999999999999999999999999998 56788999999
Q ss_pred eEecccCC
Q psy15045 174 DVRIPEST 181 (363)
Q Consensus 174 ~v~~a~~~ 181 (363)
.|.++.+-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99987643
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=3.8e-10 Score=77.74 Aligned_cols=54 Identities=31% Similarity=0.345 Sum_probs=49.0
Q ss_pred HHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 207 LREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 207 L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
|.++|++||+|..+.+.++.+++|||+|.+.++|..|+.. +..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6889999999999999977569999999999999999996 78999999999986
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=8.5e-10 Score=79.39 Aligned_cols=68 Identities=37% Similarity=0.547 Sum_probs=61.7
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCC----CcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF----REFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~----~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
+|+|+|||+.+++++|+++|+.||.|..+.+..+. +++|||+|.+.++|..|+.. +..++|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998763 79999999999999999987 5578999999864
No 98
>KOG0146|consensus
Probab=99.04 E-value=2.6e-10 Score=99.49 Aligned_cols=82 Identities=30% Similarity=0.518 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.++|+|||-.||.+..+.||..+|-+||.|.+.++..|+.|+.+|.|+||.|.++.+|.+|| +|+..|.-++|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 47999999999999999999999999999999999999999999999999999999999999 6899999999999998
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
+++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 8774
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=9.6e-10 Score=79.41 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=52.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-EEecCCC--CCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeE
Q psy15045 117 DNDLKEYFE----QFGTLEFAN-VKVDKNT--GRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDV 175 (363)
Q Consensus 117 e~~L~~~F~----~~G~i~~v~-i~~~~~~--g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v 175 (363)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|+ +++..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777666 899999999999999999999 4688899998876
No 100
>KOG0126|consensus
Probab=99.04 E-value=3.6e-11 Score=99.22 Aligned_cols=75 Identities=24% Similarity=0.435 Sum_probs=67.9
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
+.-|||+|||..+||.||..+|++||+|++|.+++| ++||||+.|++..+..-|+.. +..|.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 478999999999999999999999999999999987 899999999999998888887 7899999999987554
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
..
T Consensus 115 Yk 116 (219)
T KOG0126|consen 115 YK 116 (219)
T ss_pred cc
Confidence 43
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=77.74 Aligned_cols=64 Identities=33% Similarity=0.562 Sum_probs=57.2
Q ss_pred EcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 195 VGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 195 V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
|+|||..+++++|+++|++||.|..+.+..+ ++++|||+|.+.++|..|+.. +..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988765 368999999999999999987 478899988873
No 102
>KOG0132|consensus
Probab=99.00 E-value=1e-09 Score=108.42 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=85.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
..+-++|||||.|+.+++|.+|.++|+.||+|.+|.++.. +|||||.+....+|.+|+. +.+.+..+.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3456899999999999999999999999999999999866 7999999999999999994 5778999999999
Q ss_pred cccCCCCCCCCC--CcceEEEcCCCcCCCHHHHHHHhh
Q psy15045 177 IPESTKIGTEEP--VASKVFVGSLTPDLTESDLREHFE 212 (363)
Q Consensus 177 ~a~~~~~~~~~~--~~~~l~V~nlp~~~t~e~L~~~F~ 212 (363)
|+..+....+-. -.-.+=|.-||+..-..+|+.+++
T Consensus 491 Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 491 WAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 998876544110 012334555677644444766664
No 103
>KOG0130|consensus
Probab=98.98 E-value=1.2e-09 Score=86.01 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..-.|||.++...+++++|.+.|..||+|++|.+--| .+|||+|+|++.+.|++|+.+ +..|-|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 3578999999999999999999999999999988654 689999999999999999998 578899999999876
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5543
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.97 E-value=1.9e-09 Score=74.18 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=47.5
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 120 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|+. ++..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997663 5899999999999999994 788999999999885
No 105
>KOG1365|consensus
Probab=98.96 E-value=1.2e-09 Score=99.75 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=115.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEeccc
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQF----GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPE 179 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~ 179 (363)
-|-+++||+++++.++.++|.+- |..+.|..++.+ .|+..|-|||.|..+++|..||. +...+..|-|.+-.+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 35567999999999999999732 345566666653 78889999999999999999994 3444544444442221
Q ss_pred CCC----------------------------CCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCC-eEE--EEecCC---
Q psy15045 180 STK----------------------------IGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-VVD--VLIPKP--- 225 (363)
Q Consensus 180 ~~~----------------------------~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~--i~i~~~--- 225 (363)
..+ .-+......+|-+.+||++.+.|+|.++|..|-. |.. |.+.-+
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 110 0011122568999999999999999999998865 443 555422
Q ss_pred -CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 226 -FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 226 -~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
..|-|||+|.+.++|.+|... .+....+.|.|--+...+-
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 578999999999999998887 3344688999987776543
No 106
>KOG1456|consensus
Probab=98.96 E-value=5e-08 Score=89.16 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=124.5
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeee
Q psy15045 98 SGPVQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICD 174 (363)
Q Consensus 98 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~ 174 (363)
.....++.+.|-+|.. .++-+.|..+|-.||.|+.|+.++.+ .|-|.|++.+..+.++|+ +++..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 3345678899999975 47888999999999999999999875 579999999999999999 567778888888
Q ss_pred EecccCCCC----------------------------------CCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCC-eEE
Q psy15045 175 VRIPESTKI----------------------------------GTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-VVD 219 (363)
Q Consensus 175 v~~a~~~~~----------------------------------~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~ 219 (363)
|.++...-. ..-.++++.|..-|.|..+||+.|..+|...+. -++
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 877553310 011134789999999999999999999976664 456
Q ss_pred EEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCe------EEEEEEccCC
Q psy15045 220 VLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDK------KVVVMEATPK 263 (363)
Q Consensus 220 i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~------~l~V~~a~~~ 263 (363)
++++.- ....+.++|++.++|..|+.. +..+++. .|++.|+.++
T Consensus 437 vkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 437 VKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred EEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 666632 234689999999999999987 3456543 5666666654
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.94 E-value=3.5e-09 Score=96.43 Aligned_cols=73 Identities=37% Similarity=0.590 Sum_probs=67.5
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
..+|||+|||..+++++|.++|.+||.|..+.+..+ ++|||||+|.+.++|..|+.. +..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 489999999999999999999999999998888754 689999999999999999998 5899999999999664
No 108
>KOG0109|consensus
Probab=98.93 E-value=1.3e-09 Score=96.37 Aligned_cols=71 Identities=30% Similarity=0.506 Sum_probs=66.1
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
-+|||+|||..+++.+|+.+|++||.|.+|.|+ |.||||+.++...|..||.. +..|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 479999999999999999999999999999999 56999999999999999996 669999999999988874
No 109
>KOG4210|consensus
Probab=98.93 E-value=1.6e-09 Score=99.32 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=129.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-c-cccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-K-HKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~-~~~~g~~i~v~~a~ 179 (363)
..+++|++++...+.+.++..++..+|.+....+........++|++.+.|...+.+..|+.. . ..+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 578899999999999999999999999877777777667788999999999999999999843 3 34444443333322
Q ss_pred CCCC-------CCCCCCcceEE-EcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc
Q psy15045 180 STKI-------GTEEPVASKVF-VGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 180 ~~~~-------~~~~~~~~~l~-V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~ 246 (363)
.... ........++| |++|+..+++++|+.+|..+|.|..++++.+ .++||+|.|.+...+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 2211 11112234455 9999999999999999999999999999854 689999999999999999884
Q ss_pred -CCeeCCeEEEEEEccCCCcc
Q psy15045 247 -HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 -~~~~~g~~l~V~~a~~~~~~ 266 (363)
.+.+.++++.+.+..++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred ccCcccCcccccccCCCCccc
Confidence 67899999999987776544
No 110
>KOG0153|consensus
Probab=98.92 E-value=3.1e-09 Score=96.25 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh---cccccCCee
Q psy15045 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML---KKHKIGNRI 172 (363)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~---~~~~~~g~~ 172 (363)
.+.++....+|||++|-..++|.+|++.|.+||+|.++.+... +++|||+|.+.++|+.|.. +...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3445567889999999889999999999999999999999876 5799999999999999984 466799999
Q ss_pred eeEecccCC
Q psy15045 173 CDVRIPEST 181 (363)
Q Consensus 173 i~v~~a~~~ 181 (363)
|.|.|..+.
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999883
No 111
>KOG4208|consensus
Probab=98.86 E-value=7.6e-09 Score=87.52 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQF-GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....-++|..+|..+.+.++..+|.+| |.+..+++-+++.||.|+|||||+|++.+.|.-|- +|+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 456779999999999999999999999 77888899899999999999999999999999887 567888999999888
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6555
No 112
>KOG0153|consensus
Probab=98.85 E-value=8.5e-09 Score=93.45 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=69.4
Q ss_pred CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc---CCeeCCeEEEEEEcc
Q psy15045 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ---HVNIKDKKVVVMEAT 261 (363)
Q Consensus 185 ~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~---~~~~~g~~l~V~~a~ 261 (363)
+++...++|||++|-..+++.+|+++|.+||+|..|.+... ++.|||+|.+.++|+.|.++ ...|+|.+|.|.|..
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 33444689999999999999999999999999999999865 78999999999999999998 458999999999988
Q ss_pred C
Q psy15045 262 P 262 (363)
Q Consensus 262 ~ 262 (363)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 113
>KOG0112|consensus
Probab=98.85 E-value=2e-09 Score=108.01 Aligned_cols=161 Identities=15% Similarity=0.277 Sum_probs=129.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
....+++||++||+..+++.+|+..|..+|.|.+|.|-+-+ -+.-.-||||.|.+...+-.|.. .+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 45578999999999999999999999999999999886653 33334599999999998888773 3444544455555
Q ss_pred cccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCC--
Q psy15045 177 IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKD-- 252 (363)
Q Consensus 177 ~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g-- 252 (363)
+... .....+.+++++|+..+....|...|..||.|..|.+.+. ..||+|.|++...|+.|+.. +..|++
T Consensus 447 lG~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-q~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 447 LGQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-QPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-CcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 5543 2334578999999999999999999999999999998755 67999999999999999987 556654
Q ss_pred eEEEEEEccCCCcc
Q psy15045 253 KKVVVMEATPKKKM 266 (363)
Q Consensus 253 ~~l~V~~a~~~~~~ 266 (363)
+.|.|.|+.+....
T Consensus 521 ~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 521 RRLRVDLASPPGAT 534 (975)
T ss_pred cccccccccCCCCC
Confidence 57999998886544
No 114
>KOG0120|consensus
Probab=98.84 E-value=1e-08 Score=99.17 Aligned_cols=160 Identities=28% Similarity=0.388 Sum_probs=124.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-----------CC-eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQF-----------GT-LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHK 167 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~ 167 (363)
.....++|+++|+.++++.+..+|..- |+ +..+.+-.. +.|||++|.+.+.|..|+ ..+..
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccchh
Confidence 356889999999999999999999753 32 555555433 679999999999999998 34556
Q ss_pred cCCeeeeEecccCCCCC--------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--
Q psy15045 168 IGNRICDVRIPESTKIG--------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-- 225 (363)
Q Consensus 168 ~~g~~i~v~~a~~~~~~--------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-- 225 (363)
+.|..+++......... .......++||++||..+++.+++++...||.+....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 66766665432211100 00111568999999999999999999999999998887765
Q ss_pred ---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCcc
Q psy15045 226 ---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 226 ---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~ 266 (363)
+++|||.+|.+......|+.. +..+.++.|.|..|-.....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 789999999999999999987 77899999999888775544
No 115
>KOG4661|consensus
Probab=98.82 E-value=2.2e-08 Score=95.91 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc--ccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK--KHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~--~~~~~g~~i~v~~a~ 179 (363)
-+++|||.+|...+-..+|+.+|++||+|.-.+|+.+..+.-.++|+||++.+.++|.+||.+ .++|.|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 478999999999999999999999999999999999877777789999999999999999965 568999999998866
Q ss_pred CC
Q psy15045 180 ST 181 (363)
Q Consensus 180 ~~ 181 (363)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 44
No 116
>KOG0108|consensus
Probab=98.81 E-value=8.8e-09 Score=98.95 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=71.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..+||+|+|+++++++|.++|+..|.|.++++.-| ++||||++|.+.++|..|++. +.++.|++|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999865 799999999999999999998 78999999999998887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 7655
No 117
>KOG0128|consensus
Probab=98.78 E-value=1e-09 Score=109.57 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=117.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~~ 180 (363)
...++||.||+..+.+.+|...|.++|.+..+.+....+.++.+|+|++.|..++.+.+|+. ....+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 45689999999999999999999999999888877666789999999999999999999983 2222233
Q ss_pred CCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeE
Q psy15045 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKK 254 (363)
Q Consensus 181 ~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~ 254 (363)
...++|.|.|+..|.+.|+.+|.++|.+++.+++.. ++|.|+|.|.+..+|.+++.. ...++-+.
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 157999999999999999999999999998876632 689999999999999998887 33455555
Q ss_pred EEEEEccC
Q psy15045 255 VVVMEATP 262 (363)
Q Consensus 255 l~V~~a~~ 262 (363)
+.|....|
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 55655555
No 118
>KOG4454|consensus
Probab=98.77 E-value=1.6e-09 Score=92.11 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=104.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|+...++|+-|.++|-+-|+|..|.|..++ .++.+ ||||.|.++.+..-|+ +++..+.+..+.+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3467899999999999999999999999999999998885 55566 9999999999999998 578888888777665
Q ss_pred ccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHh
Q psy15045 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 178 a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~ 245 (363)
-...... -|...++++.+...|+.-|.+..+++..+ .+.++|+.+.-..+.-.++.
T Consensus 84 r~G~sha------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 84 RCGNSHA------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ccCCCcc------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhh
Confidence 3332111 15677899999999999999999888754 56788888765554444443
No 119
>KOG0415|consensus
Probab=98.74 E-value=1.4e-08 Score=92.12 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
.|+.+.|||--|.+-+++++|.-+|+.||.|.+|.|++| +-.||||+|++.+++++|.=+ +..|+++.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 356789999999999999999999999999999999987 456999999999999999876 6789999999999
Q ss_pred ccCCCcc
Q psy15045 260 ATPKKKM 266 (363)
Q Consensus 260 a~~~~~~ 266 (363)
+..-.+.
T Consensus 316 SQSVsk~ 322 (479)
T KOG0415|consen 316 SQSVSKV 322 (479)
T ss_pred hhhhhhh
Confidence 8876553
No 120
>KOG0132|consensus
Probab=98.74 E-value=2.3e-08 Score=99.00 Aligned_cols=77 Identities=25% Similarity=0.454 Sum_probs=71.7
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
+++|||++|+..+++.||..+|+.||+|.+|.++.. +++|||.+....+|.+|+.+ .+.+.++.|+|.|+..+.-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 789999999999999999999999999999999865 99999999999999999998 678999999999998876554
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=98.66 E-value=9.2e-08 Score=68.98 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=45.9
Q ss_pred HHHHHHHhh----cCCCeEEEE-e--cC-----CCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEE
Q psy15045 204 ESDLREHFE----YYGAVVDVL-I--PK-----PFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVV 257 (363)
Q Consensus 204 ~e~L~~~F~----~~G~i~~i~-i--~~-----~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V 257 (363)
+++|+++|+ +||.|.+|. + .+ .++|||||+|.+.++|.+|+.. +..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 3 22 2589999999999999999997 78999999876
No 122
>KOG4206|consensus
Probab=98.63 E-value=1e-07 Score=82.08 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.7
Q ss_pred cceEEEcCCCcCCCHHHHHH----HhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 190 ASKVFVGSLTPDLTESDLRE----HFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~----~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..+|||.||++-+..++|+. +|++||.|.+|...+. .+|.|||.|.+.+.|-.|+.+ +..|-|++++|.||.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999999888 9999999999998864 789999999999999999998 889999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
.+..--
T Consensus 89 s~sdii 94 (221)
T KOG4206|consen 89 SDSDII 94 (221)
T ss_pred Cccchh
Confidence 877554
No 123
>KOG4660|consensus
Probab=98.56 E-value=7.9e-08 Score=92.38 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=108.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|+|-|||..+++++|+.+|+.||+|..|+.-. ..+|..||+|.|..+|++|++ +..++.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 45789999999999999999999999999999976544 448999999999999999994 57788888777322
Q ss_pred ccCCCCC---------------CCCCC----cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHH
Q psy15045 178 PESTKIG---------------TEEPV----ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238 (363)
Q Consensus 178 a~~~~~~---------------~~~~~----~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~ 238 (363)
....... ...++ ...+| +.|++..+...++..|+-+|.+.. +....-...-|++|.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~ 224 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNR 224 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhcccc
Confidence 1111100 00011 12233 348888888888888888888877 443222336677887777
Q ss_pred HHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 239 VAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 239 ~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
++..+... +..+.+....+.++.+
T Consensus 225 s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 225 SYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred chhhcccCCceecCCCCceEEecCC
Confidence 77444433 5566666666776665
No 124
>KOG0533|consensus
Probab=98.54 E-value=2.9e-06 Score=75.33 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=69.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..+|+|.|||..++++||+++|+.||.++.+.+-.+ +.|.|-|.|...++|.+|++. +..++|+.+.+....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 478999999999999999999999998888877654 678999999999999999998 78999999999988887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
....
T Consensus 163 ~~~~ 166 (243)
T KOG0533|consen 163 SQSK 166 (243)
T ss_pred cccc
Confidence 6654
No 125
>KOG0116|consensus
Probab=98.52 E-value=1.9e-07 Score=89.25 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~~ 180 (363)
..+|||+|||.++++++|+++|..||+|+...|....-.+...+||||+|.+.+++..||. +...++++++.|+-..+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4569999999999999999999999999998876643223434899999999999999995 46677888877765443
No 126
>KOG0533|consensus
Probab=98.42 E-value=9.5e-07 Score=78.42 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
...+|+|.|||..+++++|+++|..||.++.+-|..+ ..|.+.|.|-|.|...++|.+|+. ++..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4578999999999999999999999999999988888 489999999999999999999994 5788999998888876
Q ss_pred CCC
Q psy15045 180 STK 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 653
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.41 E-value=2.3e-06 Score=65.18 Aligned_cols=78 Identities=19% Similarity=0.456 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccC----CeeeeE
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQF--GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIG----NRICDV 175 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~----g~~i~v 175 (363)
+||.|+|||...|.++|.+++... |...-+-++.|..++.+.|||||.|.+++.|..... ++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999854 778888999998899999999999999999988774 344433 456667
Q ss_pred ecccCC
Q psy15045 176 RIPEST 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.+|.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 766543
No 128
>KOG2193|consensus
Probab=98.38 E-value=6.1e-08 Score=89.89 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=119.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc---ccccCCeeeeEeccc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK---KHKIGNRICDVRIPE 179 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~---~~~~~g~~i~v~~a~ 179 (363)
++||++||.+.++.++|..+|...- ....-.|+. .||+||.+.+...|.+|+.. ..++.|+++.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4799999999999999999997541 111122222 48999999999999999942 567899999999988
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-C-CcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-F-REFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-~-~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
++.+.. +++-|.|+|+...|+.|..+...||.+..|..... + .-..-|+|.+.+.++.|+.+ ++.+....+
T Consensus 75 ~kkqrs-----rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 75 PKKQRS-----RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred hHHHHh-----hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 876543 56999999999999999999999999998876542 2 22345678888899999987 778888899
Q ss_pred EEEEccCCCcc
Q psy15045 256 VVMEATPKKKM 266 (363)
Q Consensus 256 ~V~~a~~~~~~ 266 (363)
.|.|-......
T Consensus 150 k~~YiPdeq~~ 160 (584)
T KOG2193|consen 150 KVGYIPDEQNA 160 (584)
T ss_pred hcccCchhhhh
Confidence 99987665433
No 129
>KOG4661|consensus
Probab=98.36 E-value=8.4e-07 Score=85.27 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=67.5
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.++|||.+|...+-..+|+.+|++||.|+-.+|+.+ .+.|+||++.+.++|.+||+. ..+|.|+.|.|..++-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 679999999999999999999999999999988754 578999999999999999998 4589999999998776
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 130
>KOG0226|consensus
Probab=98.34 E-value=4.1e-07 Score=79.36 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+....+||.+.|..+++++-|...|.+|-.-...++++|+.||+++||+||.|.+..++..|+ +++..++.+.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 456789999999999999999999999988888999999999999999999999999999999 468889999998877
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+..+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 6555
No 131
>KOG0226|consensus
Probab=98.30 E-value=5.2e-07 Score=78.75 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred CCeEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 103 NTDLVVLGIPWTFTDND-L--KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
--.++++++-..+..+- | ...|+.+-.+...+++++. .+.-++++|+.|.....-.++- .++..+.-..+++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34566777665555544 3 6778877777777777774 5667899999998765544443 124444444444433
Q ss_pred ccCCCC---CCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--C
Q psy15045 178 PESTKI---GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--H 247 (363)
Q Consensus 178 a~~~~~---~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~ 247 (363)
...-.. ........+||.+.|..+++++.|-..|.+|-.....+++++ ++||+||.|.+.+++..|+.. +
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 332221 122334689999999999999999999999988888888776 789999999999999999998 6
Q ss_pred CeeCCeEEEEEEccCC
Q psy15045 248 VNIKDKKVVVMEATPK 263 (363)
Q Consensus 248 ~~~~g~~l~V~~a~~~ 263 (363)
..++.++|.+....-+
T Consensus 255 kyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 255 KYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccchhHhhhhhHH
Confidence 7888888877654443
No 132
>KOG4208|consensus
Probab=98.29 E-value=3e-06 Score=71.98 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=67.3
Q ss_pred CCCCCcceEEEcCCCcCCCHHHHHHHhhcC-CCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 185 TEEPVASKVFVGSLTPDLTESDLREHFEYY-GAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 185 ~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~-G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
+.......++|..+|..+.+.++..+|.+| |.|..+++-++ ++|||||+|++.+.|.-|-+. +..|.++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 333445789999999999999999999988 66778888553 899999999999999998887 5678899999
Q ss_pred EEEccCC
Q psy15045 257 VMEATPK 263 (363)
Q Consensus 257 V~~a~~~ 263 (363)
|.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998887
No 133
>KOG1365|consensus
Probab=98.28 E-value=7.7e-06 Score=75.36 Aligned_cols=158 Identities=24% Similarity=0.343 Sum_probs=107.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccCC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPEST 181 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~~ 181 (363)
..-|-.++||+..++.+|..+|.-.--..-.+.+.....|+-.|.|.|.|.+.|.-+.|++. .+.+.++.|.|-.+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 34456789999999999999998542221122222224667779999999999999999864 66777888888665544
Q ss_pred CC-------CCC------CCCcceEEEcCCCcCCCHHHHHHHhhcC----CCeEEEEec-C-C--CCcEEEEEecCHHHH
Q psy15045 182 KI-------GTE------EPVASKVFVGSLTPDLTESDLREHFEYY----GAVVDVLIP-K-P--FREFAFVTFELDSVA 240 (363)
Q Consensus 182 ~~-------~~~------~~~~~~l~V~nlp~~~t~e~L~~~F~~~----G~i~~i~i~-~-~--~~g~afV~F~~~~~A 240 (363)
.- ..+ ....-.|-+.+||.++++.++.++|.+. |..+.|-++ + | ..|-|||.|...++|
T Consensus 140 ~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~a 219 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDA 219 (508)
T ss_pred hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHH
Confidence 20 000 0112356788999999999999999632 233344333 2 2 568899999999999
Q ss_pred HHHHhcCC-eeCCeEEEEEEc
Q psy15045 241 KSLIGQHV-NIKDKKVVVMEA 260 (363)
Q Consensus 241 ~~Ai~~~~-~~~g~~l~V~~a 260 (363)
+.|+.++. .|+-|.|.+-.+
T Consensus 220 q~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 220 QFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 99999854 344445555433
No 134
>KOG4209|consensus
Probab=98.27 E-value=1.1e-06 Score=78.15 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a 178 (363)
..+...+||+|+...++.+++...|+.||.|..+.|..|+..+.++||+||+|.+.+.+..|+. ++..|.++.+.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4467899999999999999999999999999999999999899999999999999999999995 888999999888775
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 135
>KOG4660|consensus
Probab=98.14 E-value=1.9e-06 Score=83.06 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
.....+|+|-|||.++++++|+.+|+.||+|..|+..+..++.+||+|-|..+|++|+++ ...+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344689999999999999999999999999999988888899999999999999999998 5567777666
No 136
>KOG0151|consensus
Probab=98.11 E-value=5.8e-06 Score=81.65 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCceeEEEEEeCCHHHHHHHHh--cccccCCeee
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK---NTGRSKGFGFIRFSSHESALKAML--KKHKIGNRIC 173 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i 173 (363)
+++.+++|||+||++.++++.|...|..||+|.+++|+.-+ ...+.+-|+||.|-+..+|++|++ ++..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35678999999999999999999999999999999998754 234566799999999999999994 5777888888
Q ss_pred eEecccC
Q psy15045 174 DVRIPES 180 (363)
Q Consensus 174 ~v~~a~~ 180 (363)
++-|+.+
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 8888743
No 137
>KOG1457|consensus
Probab=98.08 E-value=1.8e-05 Score=68.05 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=64.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc--CCeeC---CeEEEEE
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ--HVNIK---DKKVVVM 258 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~--~~~~~---g~~l~V~ 258 (363)
.++|||.+||.++...+|..+|..|-.-+.+.+.-. .+.+|||.|.+...|.+|+.+ +..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 689999999999999999999999876655444322 346999999999999999987 55554 6789999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
+|+...+++
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998877665
No 138
>KOG4676|consensus
Probab=98.04 E-value=2.8e-06 Score=78.41 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=104.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN---TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
...|.|.||.+.++.++++.+|.-.|+|..++|+.... -......|||.|.+..++..|- +..+.+-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 34799999999999999999999999999999876432 2245579999999999888775 4444444444444321
Q ss_pred cCCCC-------------------C------------------------CCCC----------CcceEEEcCCCcCCCHH
Q psy15045 179 ESTKI-------------------G------------------------TEEP----------VASKVFVGSLTPDLTES 205 (363)
Q Consensus 179 ~~~~~-------------------~------------------------~~~~----------~~~~l~V~nlp~~~t~e 205 (363)
-.... . +..+ ...+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 11100 0 0000 14578999999999999
Q ss_pred HHHHHhhcCCCeEEEEecC-CCCcEEEEEecCHHHHHHHHhc
Q psy15045 206 DLREHFEYYGAVVDVLIPK-PFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 206 ~L~~~F~~~G~i~~i~i~~-~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
++.+.|+.+|+|.+..+-- +...+|.|+|....+...|+..
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh
Confidence 9999999999999887753 3456788999877777777766
No 139
>KOG0106|consensus
Probab=97.99 E-value=7.2e-06 Score=71.33 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=62.4
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..+||++||+.+.+.+|..+|..||.|..+.+. .+|+||+|.+..+|.-|+-. +..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999987 68999999999999999987 66788888888876654
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.99 E-value=1.7e-05 Score=61.79 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=45.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-------CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-------HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-------~~~~~g~~l~V~~a~~~ 263 (363)
..|.|.+++..++.++|++.|++||.|.+|.+.+. ...|+|.|.+.++|++|+.+ ...+.+..+.+......
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe 80 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE 80 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH
Confidence 46889999999999999999999999999999865 56899999999999999886 24667777766654443
No 141
>KOG4209|consensus
Probab=97.94 E-value=4.6e-05 Score=67.81 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=67.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
.....+||+|+...+|.+++..+|+.||.|..+.++.+ +++|+||+|.+.+.++.|+.. +..|.|+.+.|.+..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 34579999999999999999999999999998887754 689999999999999999996 789999999998866
Q ss_pred CC
Q psy15045 262 PK 263 (363)
Q Consensus 262 ~~ 263 (363)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 142
>KOG0151|consensus
Probab=97.87 E-value=2.5e-05 Score=77.34 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=68.4
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
+|.+++|||+||++.++++.|...|..||.|..++|+-+ .+.++||-|.+..+|++|+.. +..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 456789999999999999999999999999999998743 467999999999999999997 7788888999
Q ss_pred EEEccCCC
Q psy15045 257 VMEATPKK 264 (363)
Q Consensus 257 V~~a~~~~ 264 (363)
+-|+++-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 98875543
No 143
>KOG4307|consensus
Probab=97.86 E-value=5.7e-05 Score=74.62 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=112.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~ 180 (363)
+.+.+-+.+++.+.++.+++++|... .|.++.|..+...+...|-++|.|....++.+|+.. ....-.|.+.+..+-.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 44556677899999999999998743 355666666554455578999999999999999964 3333345555532211
Q ss_pred CC----------------------------------CC--CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE-EEec
Q psy15045 181 TK----------------------------------IG--TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD-VLIP 223 (363)
Q Consensus 181 ~~----------------------------------~~--~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~-i~i~ 223 (363)
.. +. ........|||..||..+++.++.++|...-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 10 00 00112678999999999999999999988777776 6665
Q ss_pred CC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 224 KP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 224 ~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
+- .++.|||.|...+++.+|... .+.++.+.|+|.-...
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 32 467899999998888777765 4566677777765433
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.76 E-value=0.00013 Score=55.55 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=55.2
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcC--CCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeC----CeEEEE
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYY--GAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIK----DKKVVV 257 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~--G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~----g~~l~V 257 (363)
++|.|+|+|...|.++|.+++... |....+.++-| +.|||||.|.+++.|.+..+. +..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 55556666544 579999999999999887776 43332 456677
Q ss_pred EEccC
Q psy15045 258 MEATP 262 (363)
Q Consensus 258 ~~a~~ 262 (363)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 145
>KOG4454|consensus
Probab=97.68 E-value=0.00023 Score=61.20 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=63.6
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..++|||+||...++++.|.++|-+-|.|..+.|+.+ ...||||.|.+.-+..-|++. +..+.+.++.|.+-...
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 3589999999999999999999999999999999864 234999999999999999987 66777787777764443
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.67 E-value=0.00022 Score=52.05 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEe
Q psy15045 104 TDLVVLGIPWTFTDNDLK----EYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVR 176 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~----~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~ 176 (363)
..|+|.|||.+.+-..|+ .++..+| .|.+|. .+.|+|.|.+.+.|.+|. +++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999887655 5666675 566552 368999999999999999 46788999999999
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 97443
No 147
>KOG1995|consensus
Probab=97.63 E-value=6.9e-05 Score=68.95 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLE--------FANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN 170 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g 170 (363)
....+|||-+||..+++++|.++|.++|.|. .|.|-++++|+..||-|.|.|.+...|++|+. +...+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3567899999999999999999999999875 46788899999999999999999999999995 4778888
Q ss_pred eeeeEecccCCC
Q psy15045 171 RICDVRIPESTK 182 (363)
Q Consensus 171 ~~i~v~~a~~~~ 182 (363)
..|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 888888877653
No 148
>KOG1548|consensus
Probab=97.61 E-value=0.00015 Score=66.31 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=63.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEE--------EEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVD--------VLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--------i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
++.|||.|||.++|.+++.++|+++|.|.. |++.++ .+|=|.+.|...++..-|++. ...|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 567999999999999999999999998763 555554 578899999999998888887 678999999
Q ss_pred EEEEccCC
Q psy15045 256 VVMEATPK 263 (363)
Q Consensus 256 ~V~~a~~~ 263 (363)
+|..|+-.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99887654
No 149
>KOG1995|consensus
Probab=97.57 E-value=0.00033 Score=64.54 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=65.9
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEE--------EEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeE
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVD--------VLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKK 254 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--------i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~ 254 (363)
..+|||-+||..+++++|.++|.++|.|.. |.|.++ +|+-|.|.|++...|++|+.- ...+.+.+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 468999999999999999999999998864 223222 789999999999999999996 67888999
Q ss_pred EEEEEccCCCccc
Q psy15045 255 VVVMEATPKKKMN 267 (363)
Q Consensus 255 l~V~~a~~~~~~~ 267 (363)
|+|.+|..+....
T Consensus 146 ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 146 IKVSLAERRTGVE 158 (351)
T ss_pred chhhhhhhccCcc
Confidence 9999988877543
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.00022 Score=48.18 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.2
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHH
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai 244 (363)
+.|-|.+.+.+..+ .+..+|..||+|..+.+. +...+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 56888999987554 455588899999999997 34779999999999999985
No 151
>KOG0128|consensus
Probab=97.52 E-value=8.1e-06 Score=82.33 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=111.6
Q ss_pred CCCCCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDN-DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~-~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~ 177 (363)
+.......+.++.+...+. ..+..|..+|.|+.|++......-...-++++.+....+++.|. ..+..+.++...|..
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCC
Confidence 3456677888887766665 56778889999999998763211112228899999999999887 346667888888888
Q ss_pred ccCCCCCCCCC-------CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEec-----CCCCcEEEEEecCHHHHHHHHh
Q psy15045 178 PESTKIGTEEP-------VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 178 a~~~~~~~~~~-------~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~-----~~~~g~afV~F~~~~~A~~Ai~ 245 (363)
+.++....... ...++||.||+..+.+++|...|..+|.+..+.+. .+.+|+|+|.|...+.|.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 77765322221 14678999999999999999999999987766554 3479999999999999999887
Q ss_pred c
Q psy15045 246 Q 246 (363)
Q Consensus 246 ~ 246 (363)
.
T Consensus 728 f 728 (881)
T KOG0128|consen 728 F 728 (881)
T ss_pred h
Confidence 5
No 152
>KOG4210|consensus
Probab=97.51 E-value=6e-05 Score=69.33 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=72.7
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEeccc
Q psy15045 102 QNTDLV-VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~ 179 (363)
...++| |++|+.++++++|+..|..+|.|..+++..++.++.++|||+|.|.....+..++. ....+.++.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345566 99999999999999999999999999999999999999999999999999999987 4667888989998877
Q ss_pred CCCC
Q psy15045 180 STKI 183 (363)
Q Consensus 180 ~~~~ 183 (363)
+...
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 6643
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.42 E-value=0.00071 Score=49.43 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=46.0
Q ss_pred ceEEEcCCCcCCCH----HHHHHHhhcCCC-eEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTE----SDLREHFEYYGA-VVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~----e~L~~~F~~~G~-i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..|+|.|||...+. ..|++++..+|. |..|. .+.|+|.|.+.+.|.+|... +..+-|++|.|+|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 46899999998875 456677778875 76762 57899999999999999987 56788999999997543
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.33 E-value=0.00066 Score=52.86 Aligned_cols=55 Identities=31% Similarity=0.482 Sum_probs=35.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
+-|.|.+++..++-++|+++|++||.|..|.+... .--|+|.|.+.++|+.|+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHH
Confidence 45889999999999999999999999999888654 23799999999999999843
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.33 E-value=0.0013 Score=50.47 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=52.1
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEE-e-----------cCCCCcEEEEEecCHHHHHHHHhc-CCeeCCe-EEE
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVL-I-----------PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDK-KVV 256 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~-i-----------~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~-~l~ 256 (363)
..|.|-+.|+. ....+.++|++||+|.+.. + ......+..|+|++..+|++|+.+ +..|+|. .+-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEE
Confidence 56888899988 6677888999999998775 1 112467999999999999999999 7888875 556
Q ss_pred EEEccC
Q psy15045 257 VMEATP 262 (363)
Q Consensus 257 V~~a~~ 262 (363)
|.++++
T Consensus 86 V~~~~~ 91 (100)
T PF05172_consen 86 VKPCDP 91 (100)
T ss_dssp EEE-HH
T ss_pred EEEcHH
Confidence 777754
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.22 E-value=0.0019 Score=58.92 Aligned_cols=108 Identities=19% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEEecCCC-CCceeEE--EEEeCCHHHHHHHHh--cccccCCe
Q psy15045 103 NTDLVVLGIPWTFTDNDL------KEYFEQFGTLEFANVKVDKNT-GRSKGFG--FIRFSSHESALKAML--KKHKIGNR 171 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L------~~~F~~~G~i~~v~i~~~~~~-g~~~G~a--fV~f~~~~~a~~al~--~~~~~~g~ 171 (363)
.+-+||-+||+.+..+++ .++|.+||.|..|.|-+.-.+ ....+++ ||+|.+.|+|..||. .+..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999988777662 479999999998887654211 2222344 999999999999995 48899999
Q ss_pred eeeEecccCCC-----CCCCCCCcceEEEcCCCc---CCCHHHHHHH
Q psy15045 172 ICDVRIPESTK-----IGTEEPVASKVFVGSLTP---DLTESDLREH 210 (363)
Q Consensus 172 ~i~v~~a~~~~-----~~~~~~~~~~l~V~nlp~---~~t~e~L~~~ 210 (363)
.|+..+...+. .....+...++|+.---+ +.+.++|...
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 99998877664 223334456777754332 4577777654
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.11 E-value=0.0014 Score=44.18 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al 162 (363)
+.|-|.+.+.+..+. +...|..||+|..+.+... .-+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 568889998877654 5559999999999887522 348999999999999985
No 158
>KOG1855|consensus
Probab=97.04 E-value=0.0076 Score=56.92 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=52.5
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------------------CCcEEEEEecCHHHHHHHHhc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------------------FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------------------~~g~afV~F~~~~~A~~Ai~~ 246 (363)
-.+++|.+-|||.+-.-+.|.++|+.+|.|+.|+|.++ .+-.|+|+|+..+.|.+|.+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 35789999999999988999999999999999999865 134799999999999999886
No 159
>KOG4849|consensus
Probab=96.97 E-value=0.0014 Score=60.07 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=54.6
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCC--eEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~--i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
.++||+||-|.+|++||.+.....|- +.+++++.+ +||||+|-..+..+.++.++. ..+|.|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 68999999999999999998887774 566666643 899999999998888888876 568888744443
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.86 E-value=0.0023 Score=58.48 Aligned_cols=73 Identities=19% Similarity=0.368 Sum_probs=59.0
Q ss_pred ceEEEcCCCcCCCHHH----H--HHHhhcCCCeEEEEecCC------CCcE--EEEEecCHHHHHHHHhc--CCeeCCeE
Q psy15045 191 SKVFVGSLTPDLTESD----L--REHFEYYGAVVDVLIPKP------FREF--AFVTFELDSVAKSLIGQ--HVNIKDKK 254 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~----L--~~~F~~~G~i~~i~i~~~------~~g~--afV~F~~~~~A~~Ai~~--~~~~~g~~ 254 (363)
.-+||-+||+.+-.|+ | .++|.+||.|..|.|-+. ..+. .||+|.+.++|..||.+ +..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4688999998775554 3 478999999999999764 1122 39999999999999998 88999999
Q ss_pred EEEEEccCC
Q psy15045 255 VVVMEATPK 263 (363)
Q Consensus 255 l~V~~a~~~ 263 (363)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999886654
No 161
>KOG0129|consensus
Probab=96.84 E-value=0.0039 Score=60.23 Aligned_cols=65 Identities=25% Similarity=0.406 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFE-QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
-++.+|||||+||.-++.++|..+|+ -||.|..+-|=.|++-+-.+|-|=|+|.+..+-.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34688999999999999999999999 799999999999988889999999999999999999854
No 162
>KOG4849|consensus
Probab=96.78 E-value=0.00096 Score=61.09 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=58.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeE
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFG--TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDV 175 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v 175 (363)
-.+||+||-|.+|+++|.+.....| .+.++++..++.+|++||||+|...+..+.++.+. -..+|+|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4589999999999999999998877 47788888888899999999999998877777663 355677755444
No 163
>KOG1855|consensus
Probab=96.66 E-value=0.0024 Score=60.17 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEec---CCCC--C--------ceeEEEEEeCCHHHHHHHHh
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD---KNTG--R--------SKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~g--~--------~~G~afV~f~~~~~a~~al~ 163 (363)
...+++|.+-|||.+-..+.|.++|+.+|.|..|+|+.- +.+. . .+-+|+|+|...+.|.+|..
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 357999999999999999999999999999999999875 3322 1 35689999999999999973
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.63 E-value=0.0079 Score=46.19 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EEecC------CCCCceeEEEEEeCCHHHHHHHH-hcccccCCee-
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN-VKVDK------NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRI- 172 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~------~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~- 172 (363)
..+.|.|-+.|+. ....|.+.|++||+|.+.. +.++. .......+-.|+|.++.+|.+|| +|+..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4556888899988 5567788999999988764 11100 00112458999999999999999 5788888754
Q ss_pred eeEeccc
Q psy15045 173 CDVRIPE 179 (363)
Q Consensus 173 i~v~~a~ 179 (363)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466653
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.42 E-value=0.015 Score=47.46 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=52.3
Q ss_pred CCcceEEEcCCCc------CCCH---HHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEE
Q psy15045 188 PVASKVFVGSLTP------DLTE---SDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVV 257 (363)
Q Consensus 188 ~~~~~l~V~nlp~------~~t~---e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V 257 (363)
|+..+|.|.-+.+ .+.+ .+|.+.|..||++.-+++.. +.-.|+|.+-++|.+|+.. +.+++|+.|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals~dg~~v~g~~l~i 101 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALSLDGIQVNGRTLKI 101 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHHGCCSEETTEEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHccCCcEECCEEEEE
Confidence 4456777755541 1222 46778889999999888884 4789999999999999998 89999999999
Q ss_pred EEccCC
Q psy15045 258 MEATPK 263 (363)
Q Consensus 258 ~~a~~~ 263 (363)
+...|.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 987774
No 166
>KOG2202|consensus
Probab=96.37 E-value=0.01 Score=52.59 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHhh-cCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 205 SDLREHFE-YYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 205 e~L~~~F~-~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
|+|...|+ +||+|+.+.|-.+ -.|-++|.|...++|++|++. +..++|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 55666666 8999999877654 467899999999999999998 7799999999888654
No 167
>KOG4307|consensus
Probab=96.15 E-value=0.014 Score=58.26 Aligned_cols=74 Identities=26% Similarity=0.436 Sum_probs=61.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLE-FANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
.+.|-+.|+|++++-+||.++|..|-.+- +|.+.++ +.|...|-|-|-|++.++|.+|.+ ++..|..+.+.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999996543 4555554 789999999999999999999995 47778888777653
No 168
>KOG0115|consensus
Probab=96.07 E-value=0.03 Score=49.62 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=71.3
Q ss_pred HHHHHHHhcccccCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEE
Q psy15045 156 ESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAF 231 (363)
Q Consensus 156 ~~a~~al~~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~af 231 (363)
+.|+++ +.+....++.++|.++... .|+|.||..-++.+.|.+.|+.||.|....+.-| ..+-++
T Consensus 8 e~ak~e-Ld~~~~~~~~lr~rfa~~a----------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 8 EIAKRE-LDGRFPKGRSLRVRFAMHA----------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred HHHHHh-cCCCCCCCCceEEEeeccc----------eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 334333 4566778999999998763 6999999999999999999999999986655544 456789
Q ss_pred EEecCHHHHHHHHhc------CCeeCCeEEEEEEc
Q psy15045 232 VTFELDSVAKSLIGQ------HVNIKDKKVVVMEA 260 (363)
Q Consensus 232 V~F~~~~~A~~Ai~~------~~~~~g~~l~V~~a 260 (363)
|+|...-.|.+|... .....++++-|...
T Consensus 77 v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 999988888887775 23555666666543
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.02 E-value=0.03 Score=41.02 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=40.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
..-.+|. .|..+-..+|.++|++||.| .|..+.|- -|||...+.+.|..|+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 4445565 99999999999999999998 57777662 799999999999988743
No 170
>KOG2314|consensus
Probab=95.89 E-value=0.013 Score=57.20 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCC--H----HHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccC-Cee
Q psy15045 102 QNTDLVVLGIPWTFT--D----NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIG-NRI 172 (363)
Q Consensus 102 ~~~~l~V~nLp~~~t--e----~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~-g~~ 172 (363)
....|+|-|+|.--. - .-|..+|+++|+|....++.+...| ++||.|++|.+..+|+.|++ +++.++ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 456789999984221 2 2455789999999999998886555 89999999999999999995 455554 344
Q ss_pred eeEe
Q psy15045 173 CDVR 176 (363)
Q Consensus 173 i~v~ 176 (363)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.63 E-value=0.034 Score=45.40 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=50.1
Q ss_pred CCCeEEEcCCC------CCCCH---HHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCe
Q psy15045 102 QNTDLVVLGIP------WTFTD---NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNR 171 (363)
Q Consensus 102 ~~~~l~V~nLp------~~~te---~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~ 171 (363)
+..||.|.=+. ...++ .+|.+.|..||++.=++++.+ .-+|+|.+-++|.+|+ +++..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 45567676554 12222 267788899999877777644 5799999999999999 679999999
Q ss_pred eeeEecccCC
Q psy15045 172 ICDVRIPEST 181 (363)
Q Consensus 172 ~i~v~~a~~~ 181 (363)
.|.|+...+.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999886654
No 172
>KOG1996|consensus
Probab=95.56 E-value=0.031 Score=50.33 Aligned_cols=62 Identities=24% Similarity=0.172 Sum_probs=50.8
Q ss_pred CHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 203 TESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 203 t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
-++++++.+++||.|..|.|... ..--.||+|+..++|.+|+-. +..|+|+.+...|..-.+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 35788999999999999988753 223579999999999999987 789999999988866543
No 173
>KOG4676|consensus
Probab=95.42 E-value=0.02 Score=53.59 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=58.5
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
..|.|.||.+++|.++++.+|.-.|.|..+.|... ....|||.|.|...+..|... ...|=++.|.|..+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999998753 245899999999988888776 666667766665443
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.38 E-value=0.081 Score=42.77 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCCcceEEEcCCCcCC----CHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEE
Q psy15045 185 TEEPVASKVFVGSLTPDL----TESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVME 259 (363)
Q Consensus 185 ~~~~~~~~l~V~nlp~~~----t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~ 259 (363)
..+++-.+|.|.=|...+ +...+....+.||+|.+|.+.. +..|.|.|.|..+|-+|+.+ ....-|..+.++|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 345566788887665554 3344445567899999999873 56899999999999999998 5567788888887
Q ss_pred c
Q psy15045 260 A 260 (363)
Q Consensus 260 a 260 (363)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 3
No 175
>KOG2314|consensus
Probab=95.27 E-value=0.059 Score=52.82 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=53.6
Q ss_pred cceEEEcCCCcCC------CHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeC-CeEEE
Q psy15045 190 ASKVFVGSLTPDL------TESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIK-DKKVV 256 (363)
Q Consensus 190 ~~~l~V~nlp~~~------t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~-g~~l~ 256 (363)
...|+|.|+|.-- -..-|..+|+++|.|+...++-+ .+||.|++|.+..+|+.|++. ++.|+ .+++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4789999998632 23456689999999999999854 689999999999999999998 44333 34555
Q ss_pred EEE
Q psy15045 257 VME 259 (363)
Q Consensus 257 V~~ 259 (363)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 544
No 176
>KOG3152|consensus
Probab=95.24 E-value=0.013 Score=51.77 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=56.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC--------CCce----eEEEEEeCCHHHHHHHH--hcccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT--------GRSK----GFGFIRFSSHESALKAM--LKKHK 167 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--------g~~~----G~afV~f~~~~~a~~al--~~~~~ 167 (363)
....||+++||+.++-.-|+++|+.||.|-.|.+.....+ |.++ --|.|+|.+...|..+. +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999888765444 2222 23678999998887765 57777
Q ss_pred cCCee
Q psy15045 168 IGNRI 172 (363)
Q Consensus 168 ~~g~~ 172 (363)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88764
No 177
>KOG0921|consensus
Probab=95.04 E-value=0.06 Score=55.86 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=5.5
Q ss_pred CCceeEEEEEeCC
Q psy15045 142 GRSKGFGFIRFSS 154 (363)
Q Consensus 142 g~~~G~afV~f~~ 154 (363)
|..++|+--.|++
T Consensus 899 g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSD 911 (1282)
T ss_pred cchhhcccccccc
Confidence 3344444444443
No 178
>KOG0115|consensus
Probab=94.90 E-value=0.024 Score=50.15 Aligned_cols=59 Identities=29% Similarity=0.454 Sum_probs=53.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
..|+|.||+.-++.+.|...|+.||+|....++.| ..++..+-++|.|...-.|.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHH
Confidence 57999999999999999999999999998887777 578888999999999988888873
No 179
>KOG1996|consensus
Probab=94.73 E-value=0.086 Score=47.61 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCeeEEEEEecCCCCCce-eEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccC
Q psy15045 118 NDLKEYFEQFGTLEFANVKVDKNTGRSK-GFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 118 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~-G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~ 180 (363)
+++.+..++||.|..|.|..++..-... ---||+|...++|.+|+ +++..+.|+.+...+..-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4677888999999999888876443322 23799999999999998 689999999888776543
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.24 E-value=0.39 Score=33.31 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQF----GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
..+|+|.++. +++.++|+.+|..| + ...|..+-|. -|=|.|.+.+.|.+||..
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4579999994 58889999999998 4 4578888773 588999999999999853
No 181
>KOG2202|consensus
Probab=94.10 E-value=0.025 Score=50.16 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=46.9
Q ss_pred HHHHHHHh-hcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 118 NDLKEYFE-QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 118 ~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
++|...|+ +||+|++++|..+. .-.-+|-++|.|...++|++|+ +++..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 35555556 89999998776652 3345789999999999999999 56788899888776643
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.92 E-value=0.34 Score=39.30 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCCCH-H---HHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEe
Q psy15045 102 QNTDLVVLGIPWTFTD-N---DLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVR 176 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te-~---~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~ 176 (363)
+-.+|.|+-|..++.. + .+...++.||+|.+|.+. | +-.|.|.|.+..+|-.|+.. .....|..+.+.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 5678999888776632 3 444556789999998864 3 34799999999999999965 446778888888
Q ss_pred ccc
Q psy15045 177 IPE 179 (363)
Q Consensus 177 ~a~ 179 (363)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.81 E-value=0.32 Score=33.75 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=44.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcC---CCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYY---GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~---G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
..|+|.|++ +++.++|+.+|..| .....|..+.| .-|-|-|.+.+.|.+|+.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHc
Confidence 579999996 48999999999988 23568888866 3689999999999999864
No 184
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.79 E-value=0.094 Score=39.17 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=44.3
Q ss_pred EEEEeCCHHHHHHHHhc---ccccCCeeeeEecccCCCC------CCCCCCcceEEEcCCCcCCCHHHHHHHh
Q psy15045 148 GFIRFSSHESALKAMLK---KHKIGNRICDVRIPESTKI------GTEEPVASKVFVGSLTPDLTESDLREHF 211 (363)
Q Consensus 148 afV~f~~~~~a~~al~~---~~~~~g~~i~v~~a~~~~~------~~~~~~~~~l~V~nlp~~~t~e~L~~~F 211 (363)
|.|+|.+..-|+..+.. ...+++..+.|....-... -......++|.|.|||..+++|+|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999998854 3346666666654322211 1112335899999999999999998754
No 185
>KOG0921|consensus
Probab=93.69 E-value=0.17 Score=52.66 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=6.9
Q ss_pred CCCCCCCcceeecc
Q psy15045 66 PLDGWQDRVYYCTF 79 (363)
Q Consensus 66 ~~~g~~~~~~~~~~ 79 (363)
..-||+.+++++.+
T Consensus 649 flpgwa~i~~L~~~ 662 (1282)
T KOG0921|consen 649 FLPGWAEIMTLCNR 662 (1282)
T ss_pred ecCchHHhhhhhhh
Confidence 34455555555444
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.64 E-value=0.38 Score=35.34 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=38.8
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
...+|. +|.++-..||.++|++||.|.=--|. ..-|||...+.+.|..|+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHH
Confidence 456665 99999999999999999998544443 46899999999999887765
No 187
>KOG0112|consensus
Probab=93.61 E-value=0.09 Score=54.33 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC--eeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN--RICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g--~~i~v 175 (363)
....+.+||++|+..+....|...|..||.|..|.+-. | .-||+|.|++...|..|+. .+..+.+ +.+.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 44678899999999999999999999999998877643 3 3499999999999999984 4666665 67888
Q ss_pred ecccCCC
Q psy15045 176 RIPESTK 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++....
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 8876543
No 188
>KOG3152|consensus
Probab=93.29 E-value=0.049 Score=48.28 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=51.6
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--C-----------C----cEEEEEecCHHHHHHHHhc--CCee
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--F-----------R----EFAFVTFELDSVAKSLIGQ--HVNI 250 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~-----------~----g~afV~F~~~~~A~~Ai~~--~~~~ 250 (363)
...||+++||+.+.-..|+++|+.||.|-.|.+.+. + + .-|.|+|.+...|..+... +..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999998753 1 1 1278999999999876665 4556
Q ss_pred CCe
Q psy15045 251 KDK 253 (363)
Q Consensus 251 ~g~ 253 (363)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 554
No 189
>KOG4285|consensus
Probab=92.95 E-value=0.41 Score=43.54 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=60.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCe-EEEEEEccCCCccc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDK-KVVVMEATPKKKMN 267 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~-~l~V~~a~~~~~~~ 267 (363)
..-|-|-++|+. .-.-|..+|++||+|+..... ..-.+-+|.|.+..+|++||.+ +..|+|. -|-|+.+..+...+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksvi~ 274 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSVIN 274 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHHhc
Confidence 356777788876 445677899999999988877 3367999999999999999998 7788876 46677777766554
No 190
>KOG2416|consensus
Probab=92.60 E-value=0.13 Score=50.90 Aligned_cols=62 Identities=23% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFE-QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
.++-...++.|+|.||-.-.|.-+|+.++. ..|.|++..|=+ -|.+|||.|.+.++|.+-+.
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHH
Confidence 334445688899999998899999999999 456677663322 25689999999999877663
No 191
>KOG2193|consensus
Probab=92.33 E-value=0.091 Score=49.75 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=60.4
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCCCCcEEEEEecCHHHHHHHHhc---CCeeCCeEEEEEEccCCCcc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKPFREFAFVTFELDSVAKSLIGQ---HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~---~~~~~g~~l~V~~a~~~~~~ 266 (363)
.++|++||.+.++..+|..+|...-. ...-.++ ..||+||.+.+..-|.+|++. ..++.|+++.|...-++..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 47999999999999999999965411 1111122 258999999999999999997 34889999999999988776
Q ss_pred ccc
Q psy15045 267 NER 269 (363)
Q Consensus 267 ~~~ 269 (363)
.+.
T Consensus 80 srk 82 (584)
T KOG2193|consen 80 SRK 82 (584)
T ss_pred hhh
Confidence 544
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.08 E-value=3.3 Score=37.84 Aligned_cols=149 Identities=12% Similarity=0.164 Sum_probs=94.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecC-------CCCCceeEEEEEeCCHHHHHHHHhc-----
Q psy15045 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK-------NTGRSKGFGFIRFSSHESALKAMLK----- 164 (363)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-------~~g~~~G~afV~f~~~~~a~~al~~----- 164 (363)
....-.+|.|...|+..+++-..+...|-+||+|++|.++.+. ..........+.|-+.+.|.....+
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 3344467889999999999999999999999999999999864 1123345789999999988775421
Q ss_pred ---ccccCCeeeeEecccCCCCC-----C------------------CCCCcceEEEcCCCcCCCHHH-HHHHh---hcC
Q psy15045 165 ---KHKIGNRICDVRIPESTKIG-----T------------------EEPVASKVFVGSLTPDLTESD-LREHF---EYY 214 (363)
Q Consensus 165 ---~~~~~g~~i~v~~a~~~~~~-----~------------------~~~~~~~l~V~nlp~~~t~e~-L~~~F---~~~ 214 (363)
...+.-..|.+.+..-+... . ....++.|.|. +...+.+++ +.+.+ ..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 33455566666553321110 0 00124566663 333343333 22222 112
Q ss_pred C----CeEEEEecCC-------CCcEEEEEecCHHHHHHHHhc
Q psy15045 215 G----AVVDVLIPKP-------FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 215 G----~i~~i~i~~~-------~~g~afV~F~~~~~A~~Ai~~ 246 (363)
+ .|++|.++.. ++.||.++|-+...|...+.-
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dY 210 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDY 210 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHH
Confidence 2 2567777642 578999999999988776653
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.76 E-value=2.1 Score=33.51 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
..+.+...|..++-+.|..+.+.+- .|..++|++|. ..++=.+.+.|.+.++|.....+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHH
Confidence 3444444555566667766666664 58889999873 33566899999999999998753
No 194
>KOG2416|consensus
Probab=91.67 E-value=0.13 Score=50.75 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=59.4
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhc-CCCeEEEEecCCCCcEEEEEecCHHHHHHHHhcCC-----eeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEY-YGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHV-----NIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~-~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~~~-----~~~g~~l~V~~a~~ 262 (363)
.++.|+|.||-..+|.-+|+.++.+ .|.|... ++-.-+..|||.|.+.++|.+.+.+.| .-+.+-|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4789999999999999999999985 4556666 332347899999999999988777722 33678899988776
Q ss_pred CCc
Q psy15045 263 KKK 265 (363)
Q Consensus 263 ~~~ 265 (363)
..-
T Consensus 522 del 524 (718)
T KOG2416|consen 522 DEL 524 (718)
T ss_pred hHH
Confidence 543
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.52 E-value=1.6 Score=45.22 Aligned_cols=58 Identities=5% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhhcCCCeE-----EEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 201 DLTESDLREHFEYYGAVV-----DVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 201 ~~t~e~L~~~F~~~G~i~-----~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.++..+|-.++..-+.|. .|.|. ..|.||+..... |...+.. ...+.|++|.|..+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~---~~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF---ASHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe---CCceEEEcChhh-HHHHHHHhccccccCCceEEEECCC
Confidence 467777777776555443 45554 568899885433 4444444 5578999999998753
No 196
>KOG2135|consensus
Probab=91.50 E-value=0.13 Score=49.46 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=51.3
Q ss_pred CHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCCC
Q psy15045 203 TESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 203 t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 264 (363)
+.++|..+|.+||+|..|.+.-. --.|.|+|.+..+|-.|-.. +..|+++.|+|.|-++..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 56999999999999999988643 56799999999999555444 789999999999988843
No 197
>KOG2591|consensus
Probab=91.44 E-value=0.46 Score=46.74 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=59.1
Q ss_pred ccccCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhh--cCCCeEEEEecCCCCcEEEEEecCHHHHHH
Q psy15045 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE--YYGAVVDVLIPKPFREFAFVTFELDSVAKS 242 (363)
Q Consensus 165 ~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~--~~G~i~~i~i~~~~~g~afV~F~~~~~A~~ 242 (363)
+..++.+..+|+....+ +.|.|+-||..+-.|+++.+|. .+-.+.+|.+-.+ .-=||+|++..||+.
T Consensus 159 ~VqvDekgekVrp~~kR---------cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQq 227 (684)
T KOG2591|consen 159 NVQVDEKGEKVRPNHKR---------CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQ 227 (684)
T ss_pred CceeccCccccccCcce---------eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHH
Confidence 44555565666554433 7788899999999999999995 4666888877543 235999999999998
Q ss_pred HHhc----CCeeCCeEEEE
Q psy15045 243 LIGQ----HVNIKDKKVVV 257 (363)
Q Consensus 243 Ai~~----~~~~~g~~l~V 257 (363)
|... -.+|-|++|..
T Consensus 228 Aykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 228 AYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred HHHHHHHHHHhhcCcchhh
Confidence 8764 34667776543
No 198
>KOG2068|consensus
Probab=90.82 E-value=0.12 Score=47.81 Aligned_cols=108 Identities=16% Similarity=0.284 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCC----CCCceeEEEEEeCCHHHHHHHHhc--ccccCCee
Q psy15045 102 QNTDLVVLGIPWTFTDNDLK---EYFEQFGTLEFANVKVDKN----TGRSKGFGFIRFSSHESALKAMLK--KHKIGNRI 172 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~a~~al~~--~~~~~g~~ 172 (363)
...-+||-+|+..+..+.+. +.|.+||.|.+|.+-+++. .+-+ .-++|+|...++|..||.. +..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34568888998776555444 5899999999999888762 1111 2489999999999999964 77788888
Q ss_pred eeEecccCCCCC-----CCCCCcceEEEcCCC---cCCCHHHHHHH
Q psy15045 173 CDVRIPESTKIG-----TEEPVASKVFVGSLT---PDLTESDLREH 210 (363)
Q Consensus 173 i~v~~a~~~~~~-----~~~~~~~~l~V~nlp---~~~t~e~L~~~ 210 (363)
++..+...+... .......++|+.-+- ..++.++++..
T Consensus 155 lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~ 200 (327)
T KOG2068|consen 155 LKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSA 200 (327)
T ss_pred hHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHH
Confidence 777776665421 111112356655443 34556665543
No 199
>KOG3973|consensus
Probab=89.63 E-value=1.4 Score=40.89 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=12.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHh
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFE 125 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~ 125 (363)
++|-+...|.++++-.|.+-..
T Consensus 150 ~~L~~~k~p~Nin~~~lfe~i~ 171 (465)
T KOG3973|consen 150 RTLNFPKQPGNINEWKLFETIR 171 (465)
T ss_pred HHcCCCCCCCCchHHHHHHHHH
Confidence 3454555666777766555444
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.60 E-value=2.9 Score=32.74 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=41.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCCC---CcEEEEEecCHHHHHHHHhc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKPF---REFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~~---~g~afV~F~~~~~A~~Ai~~ 246 (363)
..+.+...|.-++-++|..+.+.+-. |..++|+++. +-.+.++|.+.++|..-...
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHH
Confidence 44445455556677778766676654 7789999873 44789999999999887776
No 201
>KOG2135|consensus
Probab=88.52 E-value=0.25 Score=47.56 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTF-TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~ 179 (363)
+.+.|-+.-.|..+ +-++|...|.+||+|..|.+-.. --.|.|+|.+..+|-.|. ..+..|+++.|+|.|..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 34555566666665 56789999999999999887443 247999999999995554 56888999999999988
Q ss_pred CCC
Q psy15045 180 STK 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 753
No 202
>KOG4285|consensus
Probab=88.24 E-value=1.8 Score=39.60 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCee-eeEec
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRI-CDVRI 177 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~-i~v~~ 177 (363)
..-|-|-++|+.-. ..|..+|++||+|++..... + -.+-+|.|.+..+|++|| +++..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---n---gNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---N---GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---C---CceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 45566678877654 46678999999998765432 2 348999999999999999 5688787743 33443
No 203
>KOG2591|consensus
Probab=87.30 E-value=1.1 Score=44.11 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh----cccccCCeeeeE
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQ--FGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML----KKHKIGNRICDV 175 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~----~~~~~~g~~i~v 175 (363)
+-+-|.++.||..+-+++++.||+. +-++.+|..-.+- -.||+|++..+|+.|.+ .-.+|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3456788999999999999999984 6677788776542 47999999999999983 345677777655
Q ss_pred ec
Q psy15045 176 RI 177 (363)
Q Consensus 176 ~~ 177 (363)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 204
>KOG2068|consensus
Probab=87.03 E-value=0.23 Score=45.97 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=56.0
Q ss_pred ceEEEcCCCcCCC-HHHHH--HHhhcCCCeEEEEecCCC--------CcEEEEEecCHHHHHHHHhc--CCeeCCeEEEE
Q psy15045 191 SKVFVGSLTPDLT-ESDLR--EHFEYYGAVVDVLIPKPF--------REFAFVTFELDSVAKSLIGQ--HVNIKDKKVVV 257 (363)
Q Consensus 191 ~~l~V~nlp~~~t-~e~L~--~~F~~~G~i~~i~i~~~~--------~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V 257 (363)
.-+||-+|+..+. +..|+ +.|.+||.|..|.+.++. -.-++|+|...++|..||.. +..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4567888887654 44444 678899999999988752 12489999999999999998 67788888777
Q ss_pred EEccCCC
Q psy15045 258 MEATPKK 264 (363)
Q Consensus 258 ~~a~~~~ 264 (363)
.+..++-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766643
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.83 E-value=0.81 Score=39.10 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=37.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEEe-cCCCC-CceeEEEEEeCCHHHHHHHHh
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQ-FGTL---EFANVKV-DKNTG-RSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~-~~~~g-~~~G~afV~f~~~~~a~~al~ 163 (363)
...+|.|++||+++|++++.+.+++ ++.- ..+.-.. +.... ..-.-|+|.|.+.+++.....
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4569999999999999999887776 5554 2333111 11111 122469999999999777664
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.28 E-value=3.1 Score=35.79 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=43.4
Q ss_pred CHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEccCCC
Q psy15045 203 TESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 203 t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~~~~ 264 (363)
..+.|+++|..|+.+......+. -+-..|.|.+.++|.+|... +..+.|..++|.|+.+-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 55889999999999888888765 34578899999999999887 358999999999985543
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.39 E-value=1.3 Score=37.80 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=44.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhc-CCCe---EEEE--ecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC----
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEY-YGAV---VDVL--IPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD---- 252 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~-~G~i---~~i~--i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g---- 252 (363)
..+|.|++||+.+|++++.+.+++ ++.- .++. .... .-.-|||.|.+.+++...... ++.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 368999999999999999997776 6655 3333 1111 234699999999997776665 333321
Q ss_pred -eEEEEEEccC
Q psy15045 253 -KKVVVMEATP 262 (363)
Q Consensus 253 -~~l~V~~a~~ 262 (363)
..-.|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2455666554
No 208
>KOG0804|consensus
Probab=83.59 E-value=7.9 Score=37.48 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
++.|+|--+|..++-.+|..+...+- .|..+++++|... ++=..+|.|.+.++|....+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~ 133 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYE 133 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHH
Confidence 77899999999999999999998775 5899999997432 24478999999999999885
No 209
>KOG0804|consensus
Probab=83.53 E-value=3.4 Score=39.89 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=49.3
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCC---CCcEEEEEecCHHHHHHHHhc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKP---FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~ 246 (363)
+..|+|-.+|..++-.||..++..+-. |.++++++| .+-.+.|+|.+.++|...-+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHH
Confidence 678999999999999999999987754 889999987 344689999999999888776
No 210
>KOG4574|consensus
Probab=82.82 E-value=0.85 Score=47.15 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=60.6
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--C--CeeCCeEEEEEEccCCCccc
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--H--VNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~--~~~~g~~l~V~~a~~~~~~~ 267 (363)
+..+.|.+-..+-.-|..+|++||.|.++...++ -..|.|+|.+.+.|..|+.+ + ....|-+.+|.+|++-...+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 3445555666777889999999999999999877 57899999999999999987 3 34567789999998876554
No 211
>KOG2253|consensus
Probab=82.25 E-value=1.1 Score=45.05 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=55.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
.+.-++||+|+...+..+-++.+...+|.|.+++... |+|+.|..+.-+..|+. ....+++..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567899999999999999999999999987766432 99999999999888883 45567776665544
No 212
>KOG2253|consensus
Probab=80.04 E-value=1.3 Score=44.70 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=58.5
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
..++..++||+|+...+..+-++.+...+|-|..+.... |+|.+|..+..+..|+.. ...++|..+.+.-
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345568999999999999999999999999998887763 999999999999888887 4567787766544
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.00 E-value=4.7 Score=34.67 Aligned_cols=60 Identities=18% Similarity=0.069 Sum_probs=41.4
Q ss_pred CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc----ccccCCeeeeEecccCC
Q psy15045 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK----KHKIGNRICDVRIPEST 181 (363)
Q Consensus 116 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~----~~~~~g~~i~v~~a~~~ 181 (363)
..+.|+++|..++.+..+..++. -+=..|.|.+.++|.+|... +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888777654 34588999999999999854 55789999999888544
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.94 E-value=13 Score=26.11 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeee
Q psy15045 114 TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRIC 173 (363)
Q Consensus 114 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i 173 (363)
.++-++++..+..|+- .+|..|+ .|| ||.|.+..+|++|.. ++..+..-.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 5678899999999963 2444553 455 899999999999994 3555554443
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.25 E-value=4.7 Score=33.11 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=74.8
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccC
Q psy15045 105 DLVVLGIP--WTFTDNDLKEYFEQ-FGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPES 180 (363)
Q Consensus 105 ~l~V~nLp--~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~ 180 (363)
...|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+.+++..++.. ...+++..+.++.-.+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 34455552 34566777776664 333223333221 147999999999999999865 4557777777766554
Q ss_pred CCCCCCCC---CcceEEEcCCCcC-CCHHHHHHHhhcCCCeEEEEecCC
Q psy15045 181 TKIGTEEP---VASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKP 225 (363)
Q Consensus 181 ~~~~~~~~---~~~~l~V~nlp~~-~t~e~L~~~F~~~G~i~~i~i~~~ 225 (363)
........ ..--|-|.|||.. .+++-|+.+.+.+|++..+.....
T Consensus 92 ~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 32222111 1234567899987 688999999999999999887643
No 216
>KOG4574|consensus
Probab=71.43 E-value=2.5 Score=43.90 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=55.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc--ccc--cCCeeeeEecccC
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK--KHK--IGNRICDVRIPES 180 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~--~~~--~~g~~i~v~~a~~ 180 (363)
+.++-|.+-..+...|..+|..||.|.+++.+++ -..|.|+|...+.|..|+.. +.+ .-|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455666677888999999999999999999887 35899999999999998843 333 4466777777664
Q ss_pred C
Q psy15045 181 T 181 (363)
Q Consensus 181 ~ 181 (363)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 217
>KOG2318|consensus
Probab=64.93 E-value=32 Score=34.57 Aligned_cols=128 Identities=16% Similarity=0.250 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeE
Q psy15045 101 VQNTDLVVLGIPWT-FTDNDLKEYFEQF----GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v 175 (363)
..+++|-|-||.|+ +.-.+|..+|+.| |.|.+|.|.... || ... +.-..+.|-++.+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FG-----keR------M~eEeV~GP~~el 233 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FG-----KER------MKEEEVHGPPKEL 233 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hh-----HHH------hhhhcccCChhhh
Confidence 36789999999986 7888999999977 589999986542 22 111 1112244443333
Q ss_pred ecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeC--
Q psy15045 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIK-- 251 (363)
Q Consensus 176 ~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~-- 251 (363)
--....... . . .++..-++-.+.-+..|+ +...+ -=||.|+|++.+.|.+.-.. |.+|.
T Consensus 234 ~~~~e~~~~--s---~------sD~ee~~~~~~~kLR~Yq-~~rLk-----YYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 234 FKPVEEYKE--S---E------SDDEEEEDVDREKLRQYQ-LNRLK-----YYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred ccccccCcc--c---c------cchhhhhhHHHHHHHHHH-hhhhe-----eEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 221111111 0 0 111111111122222222 11111 23899999999999888877 66664
Q ss_pred CeEEEEEEccCC
Q psy15045 252 DKKVVVMEATPK 263 (363)
Q Consensus 252 g~~l~V~~a~~~ 263 (363)
+..|.++|....
T Consensus 297 ~~~~DLRFIPDd 308 (650)
T KOG2318|consen 297 ANKLDLRFIPDD 308 (650)
T ss_pred cceeeeeecCCC
Confidence 456777775543
No 218
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=62.79 E-value=19 Score=25.42 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccCC
Q psy15045 118 NDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 118 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~~ 181 (363)
++|.+.|...| +|..+.-+..+.++..--.-||+.....+.. -+.+-..+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k-~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK-EIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc-ceeehHhhCCeEEEEecCCCC
Confidence 56788888888 5888887777767777778899988776633 344556688888888876544
No 219
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=62.72 E-value=17 Score=25.79 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccC
Q psy15045 118 NDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180 (363)
Q Consensus 118 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~ 180 (363)
++|.+.|...| ++..+.-+..+.++..-..-||+.....+... +.+...++++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcc
Confidence 47888899998 58888888887777777788888877654444 5566678888888876543
No 220
>KOG4410|consensus
Probab=61.63 E-value=14 Score=33.56 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=38.3
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeE-EEEecCCCCcEEEEEecCHH
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVV-DVLIPKPFREFAFVTFELDS 238 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~-~i~i~~~~~g~afV~F~~~~ 238 (363)
..-|+++||+.++.-.||+..+.+-+.+- ++.. +...+-||++|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 46799999999999999999998887654 4444 345889999997643
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.68 E-value=39 Score=23.76 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=35.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 201 DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 201 ~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
.++-++++..+..|+- ..|.. +..| =||.|.+.++|+++... +..+-+..+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 4688999999998863 23332 3334 48999999999999987 444444443
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=55.99 E-value=23 Score=32.51 Aligned_cols=73 Identities=7% Similarity=0.217 Sum_probs=57.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCC------------CcEEEEEecCHHHHHH----HHhc----CCe
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF------------REFAFVTFELDSVAKS----LIGQ----HVN 249 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~------------~g~afV~F~~~~~A~~----Ai~~----~~~ 249 (363)
++.|.+.|+..+++-..+...|.+||.|++|.++.+. .....+.|-+.+.+.. .++. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999998652 3567888988887643 2222 457
Q ss_pred eCCeEEEEEEccC
Q psy15045 250 IKDKKVVVMEATP 262 (363)
Q Consensus 250 ~~g~~l~V~~a~~ 262 (363)
++...|.++|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 8888888888764
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=55.95 E-value=48 Score=23.58 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 113 WTFTDNDLKEYFEQFGT-----LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 113 ~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
..++..+|..++...+. |-.|.|..+ |+||+-... .|..++ +++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788889988887643 556776544 899988764 455555 3567899999998864
No 224
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=55.66 E-value=49 Score=23.53 Aligned_cols=57 Identities=28% Similarity=0.288 Sum_probs=30.2
Q ss_pred cCCCHHHHHHHhhcCCC-----eEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 200 PDLTESDLREHFEYYGA-----VVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 200 ~~~t~e~L~~~F~~~G~-----i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
..++..+|..++...+. |-.|.|. ..|+||+-... .|..++.. +..++|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888876644 5577776 45888887543 34455554 56899999999865
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.23 E-value=26 Score=27.68 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHH
Q psy15045 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157 (363)
Q Consensus 115 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 157 (363)
++.++|.+.|..|..+. ++.+.++ .-+.|++.|.|...-.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 35689999999998874 6666653 3568999999987544
No 226
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.32 E-value=28 Score=32.58 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred EEEEeCCHHHHHHHHhcccccCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhh
Q psy15045 148 GFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212 (363)
Q Consensus 148 afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~ 212 (363)
|||+|.+..+|..|++.....+.+.+.+..|-.. .-|.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP---------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEP---------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCc---------ccccccccCCChHHHHHHHHHH
Confidence 7999999999999987544444455566555443 3466677766666666655443
No 227
>KOG4213|consensus
Probab=47.34 E-value=13 Score=31.44 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCC--CceeEEEEEeCCHHHHHHHHh
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFE-QFGTLEFANVKVDKNTG--RSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~al~ 163 (363)
.+++|.. .|+++|.++.. .-|.+..+.+.+. ..+ ..+|--||+|.+.++|.+++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4566665 56666665543 2278888887654 233 568999999999999998774
No 228
>KOG4410|consensus
Probab=46.30 E-value=56 Score=29.88 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCceeEEEEEeCCH
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTL-EFANVKVDKNTGRSKGFGFIRFSSH 155 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~G~afV~f~~~ 155 (363)
..+.|+|+|||.++--.+|+..+.+.+-+ .++.+. -+.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 45679999999999999999999987642 333332 2367899999764
No 229
>KOG4483|consensus
Probab=45.49 E-value=48 Score=31.82 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhccc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGT-LEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH 166 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~ 166 (363)
...|=|-++|...-.++|...|+.|+. --.|+++.|. +||-.|.+...|..||.-+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 456778899999888899999999964 3466777663 89999999999999984333
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.34 E-value=68 Score=22.22 Aligned_cols=18 Identities=22% Similarity=0.682 Sum_probs=14.5
Q ss_pred HHHHHHHhhcCCeeEEEE
Q psy15045 118 NDLKEYFEQFGTLEFANV 135 (363)
Q Consensus 118 ~~L~~~F~~~G~i~~v~i 135 (363)
++|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999865443
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.09 E-value=39 Score=25.22 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=22.8
Q ss_pred EEEEecCHHHHHHHHhc---CCeeCCeEEEEE
Q psy15045 230 AFVTFELDSVAKSLIGQ---HVNIKDKKVVVM 258 (363)
Q Consensus 230 afV~F~~~~~A~~Ai~~---~~~~~g~~l~V~ 258 (363)
|.|+|.+...|++.+.. ...+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 68999999999999988 236677766554
No 232
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=41.87 E-value=8.6 Score=38.87 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=1.3
Q ss_pred EEEEEccC
Q psy15045 255 VVVMEATP 262 (363)
Q Consensus 255 l~V~~a~~ 262 (363)
|.++|..+
T Consensus 457 itlSWk~~ 464 (556)
T PF05918_consen 457 ITLSWKEA 464 (556)
T ss_dssp ---TTS--
T ss_pred cceeeeec
Confidence 44444333
No 233
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.23 E-value=24 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.3
Q ss_pred EEEEecCHHHHHHHHhcCCeeCCeEEEEEEccCCCcc
Q psy15045 230 AFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 230 afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~ 266 (363)
|||+|++..+|..|.+.-...+.+.+.+..|.+..+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccc
Confidence 7999999999999998744445566778777766544
No 234
>KOG4483|consensus
Probab=41.17 E-value=85 Score=30.20 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=47.6
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCCCCcEEEEEecCHHHHHHHHhcCC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKPFREFAFVTFELDSVAKSLIGQHV 248 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~~~ 248 (363)
....|=|.++|...-.+||...|+.|+. =.+|.++- ...||--|.+...|..|+...|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhhccC
Confidence 3578889999999999999999999976 34666653 4689999999999999988743
No 235
>KOG4019|consensus
Probab=33.87 E-value=41 Score=28.70 Aligned_cols=74 Identities=8% Similarity=0.080 Sum_probs=48.8
Q ss_pred ceEEEcCCCcCCC-----HHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCe-EEEEEEccC
Q psy15045 191 SKVFVGSLTPDLT-----ESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDK-KVVVMEATP 262 (363)
Q Consensus 191 ~~l~V~nlp~~~t-----~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~-~l~V~~a~~ 262 (363)
..+.+.+++..+. ......+|.+|-+.....+++ +.++.-|.|.+.+.|..|..+ ...|.|. .+...++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4566667776532 233445565555544444443 355677889999999888877 5588888 888888877
Q ss_pred CCc
Q psy15045 263 KKK 265 (363)
Q Consensus 263 ~~~ 265 (363)
...
T Consensus 90 ~~~ 92 (193)
T KOG4019|consen 90 GHP 92 (193)
T ss_pred CCc
Confidence 543
No 236
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.54 E-value=17 Score=34.78 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 102 QNTDLVVLGIPWTFTDN--------DLKEYFEQ--FGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
..+.+|+.+.....+.+ ++...|.+ .+.+..+.+.++.....++|..|++|...+.|.+++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 35678888887766555 89999998 6788889998887678889999999999999998874
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.96 E-value=42 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCHHHHHHHhhcCCCeEEEEecC--CCCcEEEEEecC
Q psy15045 202 LTESDLREHFEYYGAVVDVLIPK--PFREFAFVTFEL 236 (363)
Q Consensus 202 ~t~e~L~~~F~~~G~i~~i~i~~--~~~g~afV~F~~ 236 (363)
.+.+.|++.|+.|..++-..+.. ...+++.|+|..
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECC
Confidence 35688999999998865333332 257899999965
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.26 E-value=2.2e+02 Score=20.58 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHH
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQ-FG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~a 161 (363)
+-|+-.++.+++..+|+..++. |+ +|.+|..+.-+ . ..--|||++...+.|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHH
Confidence 4566678999999999999996 56 57788776654 1 233699999888877664
No 239
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=29.21 E-value=1.1e+02 Score=24.06 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccCCCC--CCCC
Q psy15045 111 IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKI--GTEE 187 (363)
Q Consensus 111 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~~~~--~~~~ 187 (363)
||+-++ .|-++|+.-|+|.+|..+.. |.+ .+|..-+.. ...++|+ |++--...... -...
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gT 73 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGT 73 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCC-chhhheeeeehhhccCc-EEEccCCCcccEEEecC
Confidence 777655 57899999999988765432 121 222211111 1235555 55543332210 0001
Q ss_pred CC-cceEEEcCCCcCCCHHHHHHHhhc---CCCeEEEEecCC-----CCcEEEEEecCH
Q psy15045 188 PV-ASKVFVGSLTPDLTESDLREHFEY---YGAVVDVLIPKP-----FREFAFVTFELD 237 (363)
Q Consensus 188 ~~-~~~l~V~nlp~~~t~e~L~~~F~~---~G~i~~i~i~~~-----~~g~afV~F~~~ 237 (363)
+. +..+| -|..+|-.+|+++|.. |-.|+.-.+.+| +-..||..|...
T Consensus 74 Psgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 74 PSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11 12232 3667899999999964 444544334444 344788888644
No 240
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.89 E-value=1.3e+02 Score=21.98 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 216 AVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 216 ~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
.|.++..+..-+||-|||=.+..+...|+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhc
Confidence 4778888777899999999999999999987
No 241
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=27.83 E-value=2.3e+02 Score=20.25 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCCCCChhhHHHHHHHHH
Q psy15045 331 NNATVSPDVLQAVVSKAV 348 (363)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (363)
...+++.+.|++.++.+.
T Consensus 36 ~~~~kT~EeLDaELD~Ym 53 (74)
T PF13865_consen 36 KKPPKTAEELDAELDAYM 53 (74)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 367889999999999876
No 242
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=27.09 E-value=2.6e+02 Score=20.64 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=41.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQ-FG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al 162 (363)
+-|+-.++..++..+|++.++. || .|.+|..+.-+ . ..--|||.+....+|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHH
Confidence 4556668899999999999997 66 58888776654 2 2336999999988887754
No 243
>KOG2891|consensus
Probab=25.72 E-value=66 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=27.7
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEEe
Q psy15045 103 NTDLVVLGIPWT------------FTDNDLKEYFEQFGTLEFANVKV 137 (363)
Q Consensus 103 ~~~l~V~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~ 137 (363)
..||++.+||-. -+++-|+..|..||.|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 457888888743 36788999999999998887753
No 244
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.94 E-value=3.1e+02 Score=20.70 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEEEec-----CCCCCcee-EEEEEeCCHHHHHHHHhcccccCC
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQF--------GTLEFANVKVD-----KNTGRSKG-FGFIRFSSHESALKAMLKKHKIGN 170 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~--------G~i~~v~i~~~-----~~~g~~~G-~afV~f~~~~~a~~al~~~~~~~g 170 (363)
.+|| |.++++++++..+.+++ |+|.++.-.-. +-.+..+| |.++.|.-..++.+.+.....++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 4555 56788888777665543 46665542211 12355667 688889887787777765444554
Q ss_pred ee
Q psy15045 171 RI 172 (363)
Q Consensus 171 ~~ 172 (363)
..
T Consensus 88 ~V 89 (97)
T CHL00123 88 NV 89 (97)
T ss_pred Ce
Confidence 33
No 245
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.58 E-value=3.7e+02 Score=22.24 Aligned_cols=56 Identities=7% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEEecCCC---------CCcee-EEEEEeCCHHH
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQF---GTLEFANVKVDKNT---------GRSKG-FGFIRFSSHES 157 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~---------g~~~G-~afV~f~~~~~ 157 (363)
+..+|++.-++..+++++.++..++- +++.+|.+-+..+. ...+. |-+|.|.+-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34689999999999999999999865 56777777664322 12334 88888887543
No 246
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=24.51 E-value=1.8e+02 Score=28.78 Aligned_cols=8 Identities=13% Similarity=-0.110 Sum_probs=3.5
Q ss_pred CcEEEEEe
Q psy15045 227 REFAFVTF 234 (363)
Q Consensus 227 ~g~afV~F 234 (363)
.|.|++-+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 34554433
No 247
>KOG4008|consensus
Probab=23.79 E-value=72 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=28.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFA 133 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 133 (363)
....+||+-|+|..++++.|..+.+++|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 467789999999999999999999999865443
No 248
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.09 E-value=2.6e+02 Score=27.52 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=4.6
Q ss_pred EEEEecCHHH
Q psy15045 230 AFVTFELDSV 239 (363)
Q Consensus 230 afV~F~~~~~ 239 (363)
..|.|+-+.+
T Consensus 316 ~VI~~~~P~~ 325 (456)
T PRK10590 316 HVVNYELPNV 325 (456)
T ss_pred EEEEeCCCCC
Confidence 3455554443
No 249
>KOG4019|consensus
Probab=22.43 E-value=68 Score=27.37 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCeEEEcCCCCCCC-----HHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCe-eee
Q psy15045 103 NTDLVVLGIPWTFT-----DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNR-ICD 174 (363)
Q Consensus 103 ~~~l~V~nLp~~~t-----e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~-~i~ 174 (363)
.+++++.+++..+- ......+|.+|-+.....+++. .+..-|.|.+++.|..|.. ....+.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 45677788876542 2234456666665555455443 4677789999999998874 35567776 777
Q ss_pred EecccCC
Q psy15045 175 VRIPEST 181 (363)
Q Consensus 175 v~~a~~~ 181 (363)
.-++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7776654
No 250
>KOG4365|consensus
Probab=21.49 E-value=24 Score=34.20 Aligned_cols=75 Identities=5% Similarity=-0.100 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
.+-|+..||...+++++.-+|.-||.|..+.+.+.-+.+..+-.+||+-... .+..+| +....+.+..+++.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 4567889999999999999999999998888766655566677888876653 445555 23556667666666554
Done!