Query psy15045
Match_columns 363
No_of_seqs 362 out of 3333
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:01:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 6.7E-34 2.3E-38 247.3 20.5 169 99-267 9-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 1.7E-34 5.9E-39 255.1 15.8 165 102-267 14-185 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.2E-33 4.2E-38 239.3 12.8 160 102-264 2-167 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 1.5E-31 5.1E-36 225.8 19.4 157 104-262 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-31 8E-36 225.3 18.9 156 102-260 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 4.1E-31 1.4E-35 223.3 19.5 155 103-260 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 6.3E-31 2.1E-35 232.0 17.7 165 102-266 27-208 (216)
8 3nmr_A Cugbp ELAV-like family 100.0 2.3E-30 7.8E-35 220.6 18.3 158 102-261 2-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 5.1E-31 1.7E-35 225.1 13.0 162 100-263 10-174 (175)
10 3smz_A Protein raver-1, ribonu 100.0 1.1E-29 3.8E-34 233.7 20.4 166 102-267 94-268 (284)
11 3pgw_A U1-A; protein-RNA compl 100.0 3.3E-29 1.1E-33 230.4 21.4 159 100-261 6-281 (282)
12 2adc_A Polypyrimidine tract-bi 100.0 2.3E-29 8E-34 224.6 19.2 158 101-263 32-228 (229)
13 3tyt_A Heterogeneous nuclear r 100.0 1.8E-29 6.1E-34 221.3 16.8 154 102-260 3-204 (205)
14 2g4b_A Splicing factor U2AF 65 100.0 5.2E-29 1.8E-33 211.8 18.3 151 102-261 3-172 (172)
15 1qm9_A Polypyrimidine tract-bi 100.0 2.1E-29 7.1E-34 219.6 15.3 157 102-263 2-197 (198)
16 2yh0_A Splicing factor U2AF 65 100.0 8.3E-29 2.8E-33 215.4 18.8 158 102-265 3-196 (198)
17 2ghp_A U4/U6 snRNA-associated 100.0 4.4E-28 1.5E-32 224.0 18.8 233 25-264 39-292 (292)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.4E-28 2.5E-32 222.4 18.8 159 96-266 34-200 (292)
19 3sde_A Paraspeckle component 1 100.0 1.1E-27 3.7E-32 218.0 16.9 152 100-266 19-182 (261)
20 3smz_A Protein raver-1, ribonu 99.9 7.2E-27 2.5E-31 214.9 18.3 148 102-265 21-177 (284)
21 4f25_A Polyadenylate-binding p 99.9 4.5E-22 1.6E-26 158.0 11.3 104 101-206 3-113 (115)
22 2i2y_A Fusion protein consists 99.8 1.9E-20 6.4E-25 155.7 13.2 123 141-264 9-149 (150)
23 2kn4_A Immunoglobulin G-bindin 99.8 6.2E-20 2.1E-24 153.8 16.4 134 132-267 2-154 (158)
24 4fxv_A ELAV-like protein 1; RN 99.8 6.4E-20 2.2E-24 141.4 11.5 79 102-180 18-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 9.1E-20 3.1E-24 138.4 7.1 82 103-184 1-86 (91)
26 3s8s_A Histone-lysine N-methyl 99.8 8.1E-19 2.8E-23 137.9 11.9 81 101-181 4-86 (110)
27 2cqg_A TDP-43, TAR DNA-binding 99.8 5E-18 1.7E-22 131.7 13.7 84 101-184 13-96 (103)
28 2dgs_A DAZ-associated protein 99.8 3.7E-18 1.3E-22 131.4 12.3 86 100-185 7-93 (99)
29 3s7r_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 127.9 11.0 79 100-178 8-87 (87)
30 2cpz_A CUG triplet repeat RNA- 99.8 1E-17 3.4E-22 132.7 13.7 86 100-185 22-109 (115)
31 3md1_A Nuclear and cytoplasmic 99.8 6.7E-18 2.3E-22 125.5 11.4 80 103-182 1-82 (83)
32 1whw_A Hypothetical protein ri 99.8 6.1E-18 2.1E-22 130.2 11.5 85 100-184 5-91 (99)
33 2lkz_A RNA-binding protein 5; 99.8 1.3E-18 4.6E-23 132.7 7.7 79 102-180 8-94 (95)
34 2cq0_A Eukaryotic translation 99.8 7.4E-18 2.5E-22 130.7 11.7 85 100-184 12-98 (103)
35 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.3E-18 2.1E-22 126.8 10.9 80 102-181 5-86 (87)
36 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.6E-22 127.8 12.1 84 101-184 3-88 (95)
37 2do4_A Squamous cell carcinoma 99.7 1.5E-17 5.2E-22 128.2 13.0 84 99-183 13-98 (100)
38 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.8E-22 127.6 12.1 82 99-180 11-94 (95)
39 1x4h_A RNA-binding protein 28; 99.7 1.2E-17 4E-22 131.4 12.4 86 99-184 11-104 (111)
40 2dh8_A DAZ-associated protein 99.7 9.5E-18 3.2E-22 130.6 11.8 87 99-185 12-99 (105)
41 1p27_B RNA-binding protein 8A; 99.7 9E-18 3.1E-22 130.9 11.6 83 100-182 20-104 (106)
42 2dnm_A SRP46 splicing factor; 99.7 7.1E-18 2.4E-22 130.8 10.9 86 100-185 10-97 (103)
43 1x5u_A Splicing factor 3B subu 99.7 9.5E-18 3.2E-22 130.6 11.6 86 99-184 11-98 (105)
44 2dgo_A Cytotoxic granule-assoc 99.7 1.7E-17 5.9E-22 131.3 13.1 85 100-184 12-98 (115)
45 3p5t_L Cleavage and polyadenyl 99.7 2.4E-18 8.3E-23 130.1 7.7 80 104-183 2-85 (90)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8E-18 2.7E-22 125.7 10.4 79 101-179 5-85 (85)
47 3lqv_A PRE-mRNA branch site pr 99.7 2.4E-18 8.1E-23 136.3 7.8 102 101-216 6-109 (115)
48 2cpf_A RNA binding motif prote 99.7 1.2E-17 4.1E-22 128.3 11.5 85 101-185 3-92 (98)
49 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-17 4.1E-22 129.3 11.1 85 100-184 9-95 (102)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.2E-18 2.5E-22 130.5 9.9 86 100-185 9-96 (102)
51 1s79_A Lupus LA protein; RRM, 99.7 6.4E-18 2.2E-22 131.1 9.4 79 101-180 9-88 (103)
52 2dng_A Eukaryotic translation 99.7 2.8E-17 9.7E-22 127.4 12.9 85 100-185 12-97 (103)
53 2cph_A RNA binding motif prote 99.7 2.2E-17 7.6E-22 128.9 12.3 85 100-184 12-100 (107)
54 1x5t_A Splicing factor 3B subu 99.7 9.3E-18 3.2E-22 128.4 9.8 84 101-184 3-89 (96)
55 2hvz_A Splicing factor, argini 99.7 6.3E-18 2.1E-22 130.7 8.9 91 104-199 1-100 (101)
56 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 129.7 11.0 86 100-185 10-100 (106)
57 2la6_A RNA-binding protein FUS 99.7 2.2E-17 7.4E-22 127.2 11.7 82 98-179 8-99 (99)
58 1sjq_A Polypyrimidine tract-bi 99.7 1.4E-17 4.6E-22 128.8 10.5 80 100-185 13-96 (105)
59 2kxn_B Transformer-2 protein h 99.7 1.3E-17 4.5E-22 134.8 10.9 86 97-182 40-127 (129)
60 2div_A TRNA selenocysteine ass 99.7 2.2E-17 7.4E-22 127.1 11.6 82 101-182 7-95 (99)
61 2jrs_A RNA-binding protein 39; 99.7 2E-17 6.9E-22 129.5 11.5 82 100-181 23-106 (108)
62 2x1f_A MRNA 3'-END-processing 99.7 1.5E-17 5.2E-22 127.3 10.5 80 103-182 2-83 (96)
63 2cqd_A RNA-binding region cont 99.7 2.6E-17 8.8E-22 130.5 12.2 85 100-184 14-99 (116)
64 2d9p_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 127.1 12.5 84 100-185 12-97 (103)
65 2dnh_A Bruno-like 5, RNA bindi 99.7 4.5E-17 1.5E-21 126.7 13.3 83 101-184 13-100 (105)
66 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.6E-22 130.7 10.0 84 100-183 22-106 (109)
67 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-17 5.8E-22 126.4 10.1 80 100-179 13-94 (94)
68 1x4b_A Heterogeneous nuclear r 99.7 1.8E-17 6E-22 131.5 10.4 84 101-184 25-109 (116)
69 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.4E-22 130.0 10.3 83 100-182 23-107 (110)
70 3ucg_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 123.4 11.2 80 102-181 5-85 (89)
71 2dhg_A TRNA selenocysteine ass 99.7 4E-17 1.4E-21 126.8 11.9 83 100-183 6-92 (104)
72 1wi8_A EIF-4B, eukaryotic tran 99.7 3.4E-17 1.1E-21 127.2 11.0 83 101-184 13-97 (104)
73 2mss_A Protein (musashi1); RNA 99.7 9.7E-18 3.3E-22 122.2 7.5 74 105-178 1-75 (75)
74 3ns6_A Eukaryotic translation 99.7 6E-18 2E-22 130.6 6.7 80 102-181 5-93 (100)
75 2ywk_A Putative RNA-binding pr 99.7 3.8E-17 1.3E-21 124.7 11.1 80 100-180 13-94 (95)
76 2m2b_A RNA-binding protein 10; 99.7 1.3E-17 4.5E-22 135.3 9.0 84 100-184 20-111 (131)
77 4fxv_A ELAV-like protein 1; RN 99.7 1.7E-17 5.8E-22 127.8 9.0 73 190-262 19-98 (99)
78 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.5E-21 124.2 13.2 86 99-186 11-98 (103)
79 2lxi_A RNA-binding protein 10; 99.7 1E-17 3.5E-22 127.0 7.2 78 190-267 1-87 (91)
80 3q2s_C Cleavage and polyadenyl 99.7 2.7E-18 9.4E-23 152.5 4.7 76 190-265 68-152 (229)
81 3pgw_S U1-70K; protein-RNA com 99.7 1.6E-17 5.6E-22 160.9 10.3 79 188-266 100-185 (437)
82 2cpe_A RNA-binding protein EWS 99.7 4.2E-17 1.4E-21 128.6 10.8 85 100-184 12-106 (113)
83 2cq1_A PTB-like protein L; RRM 99.7 8.8E-17 3E-21 124.0 12.3 83 184-267 9-95 (101)
84 1u6f_A Tcubp1, RNA-binding pro 99.7 9.7E-17 3.3E-21 131.4 13.4 86 99-184 38-125 (139)
85 1p1t_A Cleavage stimulation fa 99.7 1.5E-17 5.1E-22 129.2 8.0 82 101-182 6-89 (104)
86 1x4e_A RNA binding motif, sing 99.7 1.5E-17 5.2E-22 124.2 7.6 79 101-179 3-83 (85)
87 2dgv_A HnRNP M, heterogeneous 99.7 8.7E-17 3E-21 121.9 12.0 82 100-183 5-88 (92)
88 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-16 3.9E-21 124.0 12.9 83 100-184 12-96 (103)
89 4a8x_A RNA-binding protein wit 99.7 3.4E-17 1.2E-21 123.0 9.5 81 102-182 3-86 (88)
90 1sjq_A Polypyrimidine tract-bi 99.7 2.4E-17 8.1E-22 127.4 8.6 79 188-267 14-96 (105)
91 2khc_A Testis-specific RNP-typ 99.7 4.5E-17 1.5E-21 129.5 10.6 80 100-179 37-118 (118)
92 2fy1_A RNA-binding motif prote 99.7 6E-17 2.1E-21 128.5 11.2 82 101-183 5-88 (116)
93 3ulh_A THO complex subunit 4; 99.7 7.5E-17 2.6E-21 125.9 11.5 79 100-179 26-106 (107)
94 3r27_A HnRNP L, heterogeneous 99.7 7.8E-17 2.7E-21 123.3 11.2 77 187-264 18-98 (100)
95 3ex7_B RNA-binding protein 8A; 99.7 3.9E-17 1.3E-21 131.4 10.0 84 100-183 19-104 (126)
96 3n9u_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 136.4 10.1 80 102-181 54-137 (156)
97 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.5E-17 1.6E-21 136.1 10.2 78 188-265 37-121 (156)
98 2cqp_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 125.4 8.9 82 100-181 12-95 (98)
99 3r27_A HnRNP L, heterogeneous 99.7 8.2E-17 2.8E-21 123.1 10.5 76 101-182 19-98 (100)
100 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-17 5E-22 121.2 6.1 74 105-178 1-75 (75)
101 1x4d_A Matrin 3; structural ge 99.7 8.2E-17 2.8E-21 124.2 10.5 79 188-267 13-96 (102)
102 3d2w_A TAR DNA-binding protein 99.7 6.9E-17 2.4E-21 121.8 9.9 79 188-266 9-87 (89)
103 2do0_A HnRNP M, heterogeneous 99.7 2.5E-16 8.6E-21 124.3 13.5 81 101-182 13-95 (114)
104 1wez_A HnRNP H', FTP-3, hetero 99.7 4.3E-17 1.5E-21 126.2 8.8 81 100-182 12-93 (102)
105 1x4a_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 122.6 13.8 83 99-184 18-102 (109)
106 1wg5_A Heterogeneous nuclear r 99.7 1.1E-16 3.8E-21 124.3 10.9 82 100-182 12-95 (104)
107 2dis_A Unnamed protein product 99.7 9.5E-17 3.2E-21 125.7 10.6 84 101-184 6-95 (109)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-17 7.3E-22 120.9 6.4 75 104-178 1-76 (77)
109 2cq4_A RNA binding motif prote 99.7 5.1E-17 1.8E-21 128.4 9.0 82 101-182 23-105 (114)
110 2ek1_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 125.0 7.6 80 101-180 13-94 (95)
111 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.5E-21 120.2 11.3 81 100-182 7-88 (91)
112 2cpy_A RNA-binding protein 12; 99.7 2.9E-17 9.9E-22 129.9 7.3 82 100-182 12-95 (114)
113 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.9E-16 6.4E-21 132.3 12.6 82 101-182 37-120 (156)
114 2cq1_A PTB-like protein L; RRM 99.7 1.5E-16 5.3E-21 122.6 11.2 79 101-185 13-95 (101)
115 1l3k_A Heterogeneous nuclear r 99.7 3E-17 1E-21 141.9 7.7 84 101-184 102-186 (196)
116 2kt5_A RNA and export factor-b 99.7 1.9E-16 6.4E-21 127.1 11.7 84 100-184 32-117 (124)
117 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.6E-17 8.8E-22 127.0 6.3 82 100-182 16-99 (100)
118 2cjk_A Nuclear polyadenylated 99.7 7.1E-18 2.4E-22 142.0 3.4 150 28-181 4-166 (167)
119 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.4E-21 121.6 10.6 78 102-182 8-91 (96)
120 4f25_A Polyadenylate-binding p 99.7 7.1E-17 2.4E-21 127.8 8.8 78 190-267 5-87 (115)
121 1x4d_A Matrin 3; structural ge 99.7 9.7E-17 3.3E-21 123.8 9.3 76 101-182 13-93 (102)
122 2kn4_A Immunoglobulin G-bindin 99.7 1.8E-16 6.1E-21 132.6 11.6 85 100-184 67-153 (158)
123 1wex_A Hypothetical protein (r 99.7 3E-16 1E-20 121.7 11.6 77 101-183 13-93 (104)
124 2jwn_A Embryonic polyadenylate 99.7 2.2E-16 7.5E-21 126.6 11.3 82 102-183 35-117 (124)
125 2xs2_A Deleted in azoospermia- 99.7 5.3E-17 1.8E-21 125.6 7.4 81 101-182 7-87 (102)
126 1wex_A Hypothetical protein (r 99.7 3.7E-16 1.3E-20 121.2 12.1 80 186-266 11-94 (104)
127 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 125.9 10.1 79 188-267 29-111 (119)
128 4f02_A Polyadenylate-binding p 99.7 2.6E-17 9E-22 144.7 6.2 160 21-182 9-182 (213)
129 1x5o_A RNA binding motif, sing 99.7 5.6E-16 1.9E-20 122.3 13.3 81 100-181 22-112 (114)
130 2ad9_A Polypyrimidine tract-bi 99.7 2.5E-16 8.7E-21 124.6 10.9 79 101-185 29-111 (119)
131 1wel_A RNA-binding protein 12; 99.7 9.9E-17 3.4E-21 128.7 8.7 82 100-181 22-104 (124)
132 2ki2_A SS-DNA binding protein 99.7 2.7E-17 9.1E-22 124.2 5.0 79 104-183 2-82 (90)
133 2cpi_A CCR4-NOT transcription 99.7 1.6E-16 5.4E-21 125.0 9.4 82 101-182 13-102 (111)
134 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.9E-16 9.8E-21 132.5 11.5 84 100-183 69-154 (165)
135 2lea_A Serine/arginine-rich sp 99.7 7.1E-17 2.4E-21 131.6 7.3 85 100-184 44-130 (135)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.7E-16 9.2E-21 128.7 10.6 79 100-178 60-140 (140)
137 2lea_A Serine/arginine-rich sp 99.7 1.2E-16 4.1E-21 130.2 8.4 117 147-267 6-131 (135)
138 2dgu_A Heterogeneous nuclear r 99.7 7.5E-16 2.6E-20 119.4 12.4 77 188-267 9-87 (103)
139 2hgl_A HNRPF protein, heteroge 99.7 1.5E-16 5.3E-21 129.3 8.9 81 100-181 41-125 (136)
140 2db1_A Heterogeneous nuclear r 99.7 1.6E-16 5.6E-21 126.3 8.9 80 101-181 15-98 (118)
141 1x4c_A Splicing factor, argini 99.7 7.8E-16 2.7E-20 120.4 12.7 76 189-266 14-96 (108)
142 2cqg_A TDP-43, TAR DNA-binding 99.7 5.9E-16 2E-20 119.9 11.8 81 187-267 12-97 (103)
143 1wf0_A TDP-43, TAR DNA-binding 99.7 2.1E-16 7.1E-21 118.8 8.7 79 189-267 4-82 (88)
144 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-16 7.9E-21 116.6 8.7 72 102-179 6-79 (89)
145 1x4f_A Matrin 3; structural ge 99.7 1.9E-16 6.4E-21 124.0 8.5 80 187-267 22-106 (112)
146 1wf1_A RNA-binding protein RAL 99.7 3.4E-16 1.2E-20 122.8 10.0 95 168-265 5-102 (110)
147 2err_A Ataxin-2-binding protei 99.7 2.4E-16 8.2E-21 123.6 9.1 80 100-181 26-107 (109)
148 1whw_A Hypothetical protein ri 99.7 8.7E-16 3E-20 118.0 12.0 80 188-267 6-92 (99)
149 2cqd_A RNA-binding region cont 99.7 2.3E-15 7.9E-20 119.2 14.8 81 186-266 13-99 (116)
150 3s8s_A Histone-lysine N-methyl 99.7 2E-16 6.7E-21 124.2 8.5 80 188-267 4-90 (110)
151 2dnq_A RNA-binding protein 4B; 99.7 8.1E-16 2.8E-20 116.1 11.5 78 100-185 5-84 (90)
152 2cq3_A RNA-binding protein 9; 99.7 1.3E-15 4.4E-20 118.0 13.0 82 186-267 11-97 (103)
153 2qfj_A FBP-interacting repress 99.7 5.8E-16 2E-20 135.8 12.3 83 102-184 124-208 (216)
154 2fy1_A RNA-binding motif prote 99.7 7.5E-16 2.6E-20 122.1 11.7 78 189-266 6-89 (116)
155 2fc9_A NCL protein; structure 99.7 4.6E-16 1.6E-20 120.1 10.1 81 100-184 12-94 (101)
156 3d2w_A TAR DNA-binding protein 99.7 2.6E-16 9E-21 118.6 8.5 78 100-182 8-85 (89)
157 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-15 3.9E-20 118.3 12.3 81 187-267 12-97 (103)
158 2dgs_A DAZ-associated protein 99.7 7.6E-16 2.6E-20 118.4 11.2 80 188-267 8-93 (99)
159 2ytc_A PRE-mRNA-splicing facto 99.7 7.9E-16 2.7E-20 114.7 10.9 74 100-179 9-85 (85)
160 2nlw_A Eukaryotic translation 99.7 3.4E-16 1.2E-20 121.8 9.1 78 102-181 14-100 (105)
161 2dnn_A RNA-binding protein 12; 99.7 2.1E-16 7.3E-21 123.6 7.9 78 102-181 15-93 (109)
162 3q2s_C Cleavage and polyadenyl 99.6 3.6E-16 1.2E-20 138.8 10.2 80 102-181 67-150 (229)
163 1u6f_A Tcubp1, RNA-binding pro 99.6 6.9E-16 2.4E-20 126.2 11.1 79 188-266 40-125 (139)
164 2cpx_A Hypothetical protein FL 99.6 2.6E-16 8.9E-21 124.4 8.3 85 101-185 23-109 (115)
165 2dgo_A Cytotoxic granule-assoc 99.6 2.1E-15 7.3E-20 119.1 13.5 82 186-267 11-99 (115)
166 2krb_A Eukaryotic translation 99.6 2.4E-16 8.1E-21 116.6 7.3 71 103-175 1-80 (81)
167 1fj7_A Nucleolin RBD1, protein 99.6 5.8E-17 2E-21 125.2 4.2 82 101-183 15-97 (101)
168 2fc8_A NCL protein; structure 99.6 8.6E-16 3E-20 118.7 10.6 82 100-184 12-95 (102)
169 1x4a_A Splicing factor, argini 99.6 1.3E-15 4.6E-20 119.2 11.8 79 187-265 19-101 (109)
170 2lkz_A RNA-binding protein 5; 99.6 3.7E-16 1.3E-20 119.1 8.4 74 189-262 8-94 (95)
171 2hgm_A HNRPF protein, heteroge 99.6 3.4E-16 1.2E-20 125.4 8.3 80 100-181 39-121 (126)
172 3md1_A Nuclear and cytoplasmic 99.6 6.7E-16 2.3E-20 114.5 9.4 74 191-264 2-82 (83)
173 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.1E-15 3.7E-20 118.1 10.8 80 188-267 10-96 (102)
174 2cq0_A Eukaryotic translation 99.6 9E-16 3.1E-20 118.9 10.3 82 186-267 11-99 (103)
175 1why_A Hypothetical protein ri 99.6 1.3E-15 4.5E-20 116.6 11.1 77 100-182 14-94 (97)
176 1x5t_A Splicing factor 3B subu 99.6 9.4E-16 3.2E-20 117.1 10.2 79 189-267 4-90 (96)
177 3md3_A Nuclear and cytoplasmic 99.6 5.9E-16 2E-20 129.7 9.9 80 100-179 84-165 (166)
178 2a3j_A U1 small nuclear ribonu 99.6 7.3E-16 2.5E-20 123.9 9.9 79 101-182 27-111 (127)
179 2lmi_A GRSF-1, G-rich sequence 99.6 2E-16 6.8E-21 123.6 6.4 81 100-181 8-92 (107)
180 2j8a_A Histone-lysine N-methyl 99.6 4.3E-16 1.5E-20 122.8 8.2 78 104-181 3-96 (136)
181 2cpj_A Non-POU domain-containi 99.6 7.5E-16 2.6E-20 118.4 9.4 77 100-182 12-90 (99)
182 1x5u_A Splicing factor 3B subu 99.6 1.4E-15 4.7E-20 118.2 11.0 82 186-267 11-99 (105)
183 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-15 4.8E-20 116.5 10.9 78 100-182 16-95 (97)
184 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 130.4 5.2 117 146-264 2-124 (139)
185 1x4f_A Matrin 3; structural ge 99.6 9.4E-16 3.2E-20 120.0 9.9 77 101-183 23-104 (112)
186 2do4_A Squamous cell carcinoma 99.6 1.2E-15 4.3E-20 117.4 10.5 78 188-265 15-98 (100)
187 2rs2_A Musashi-1, RNA-binding 99.6 1.5E-15 5E-20 119.0 11.0 79 188-266 23-107 (109)
188 2d9p_A Polyadenylate-binding p 99.6 9.9E-16 3.4E-20 118.6 9.9 81 187-267 12-97 (103)
189 2dnz_A Probable RNA-binding pr 99.6 1.4E-15 4.6E-20 116.0 10.4 78 189-266 4-88 (95)
190 2cpz_A CUG triplet repeat RNA- 99.6 9.8E-16 3.4E-20 121.1 9.9 82 186-267 21-109 (115)
191 1x4g_A Nucleolysin TIAR; struc 99.6 1.7E-15 5.9E-20 118.5 11.2 78 101-184 23-102 (109)
192 2wbr_A GW182, gawky, LD47780P; 99.6 8.4E-16 2.9E-20 113.6 8.8 73 189-262 6-80 (89)
193 1x4h_A RNA-binding protein 28; 99.6 1.9E-15 6.6E-20 118.6 11.5 81 187-267 12-105 (111)
194 1why_A Hypothetical protein ri 99.6 1.6E-15 5.4E-20 116.1 10.6 77 188-265 15-95 (97)
195 2dha_A FLJ20171 protein; RRM d 99.6 5.2E-16 1.8E-20 124.0 8.2 79 102-181 22-105 (123)
196 2dnh_A Bruno-like 5, RNA bindi 99.6 1.3E-15 4.3E-20 118.4 10.2 81 187-267 12-101 (105)
197 1b7f_A Protein (SXL-lethal pro 99.6 6.5E-16 2.2E-20 129.9 9.1 78 101-178 87-168 (168)
198 1s79_A Lupus LA protein; RRM, 99.6 5.2E-16 1.8E-20 120.2 7.8 77 188-264 9-90 (103)
199 1x4c_A Splicing factor, argini 99.6 2.4E-15 8.2E-20 117.6 11.4 76 101-183 13-95 (108)
200 1wf0_A TDP-43, TAR DNA-binding 99.6 5.4E-16 1.8E-20 116.6 7.3 79 102-185 4-82 (88)
201 2hvz_A Splicing factor, argini 99.6 9.8E-16 3.3E-20 118.2 8.9 76 191-266 1-78 (101)
202 2x1f_A MRNA 3'-END-processing 99.6 1.9E-15 6.3E-20 115.5 10.3 77 190-266 2-85 (96)
203 2dnm_A SRP46 splicing factor; 99.6 1.1E-15 3.9E-20 118.3 9.2 81 187-267 10-97 (103)
204 3s7r_A Heterogeneous nuclear r 99.6 1.4E-15 4.9E-20 113.9 9.5 73 188-260 9-87 (87)
205 2dgx_A KIAA0430 protein; RRM d 99.6 2.5E-15 8.4E-20 114.9 10.9 78 189-266 8-93 (96)
206 2dgt_A RNA-binding protein 30; 99.6 3.4E-15 1.1E-19 113.1 11.6 77 187-266 7-85 (92)
207 3nmr_A Cugbp ELAV-like family 99.6 5.8E-16 2E-20 131.0 8.2 79 100-179 92-175 (175)
208 3ex7_B RNA-binding protein 8A; 99.6 1.2E-15 4E-20 122.7 9.6 79 188-266 20-105 (126)
209 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.3E-15 4.6E-20 113.4 9.2 74 188-261 5-85 (85)
210 2dnq_A RNA-binding protein 4B; 99.6 2.1E-15 7.2E-20 113.8 10.3 76 188-266 6-83 (90)
211 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.1E-15 3.7E-20 114.5 8.7 75 189-263 5-86 (87)
212 2cph_A RNA binding motif prote 99.6 3.4E-15 1.2E-19 116.3 11.8 82 186-267 11-101 (107)
213 1x4g_A Nucleolysin TIAR; struc 99.6 2.4E-15 8.2E-20 117.7 10.8 79 188-267 23-103 (109)
214 1wi8_A EIF-4B, eukaryotic tran 99.6 4.2E-15 1.4E-19 115.3 12.1 79 188-267 13-98 (104)
215 2la4_A Nuclear and cytoplasmic 99.6 1.3E-15 4.3E-20 117.6 9.0 75 101-181 25-101 (101)
216 4a8x_A RNA-binding protein wit 99.6 1.7E-15 6E-20 113.5 9.5 76 190-265 4-87 (88)
217 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.5E-20 116.5 9.4 78 188-266 13-92 (99)
218 2dnl_A Cytoplasmic polyadenyla 99.6 7.7E-16 2.6E-20 121.6 7.7 79 101-180 6-87 (114)
219 2cpy_A RNA-binding protein 12; 99.6 1.2E-15 4.2E-20 120.4 8.9 80 188-267 13-98 (114)
220 2dgu_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 115.6 11.2 77 100-184 8-86 (103)
221 2e5h_A Zinc finger CCHC-type a 99.6 3.6E-15 1.2E-19 113.4 11.1 75 187-261 13-94 (94)
222 1x5s_A Cold-inducible RNA-bind 99.6 1.4E-15 4.7E-20 117.5 8.9 79 188-266 10-95 (102)
223 1x4b_A Heterogeneous nuclear r 99.6 2.9E-15 1E-19 118.6 10.9 78 190-267 27-110 (116)
224 2cqc_A Arginine/serine-rich sp 99.6 2.5E-15 8.6E-20 114.4 10.1 77 186-262 11-94 (95)
225 2hgn_A Heterogeneous nuclear r 99.6 2.5E-16 8.6E-21 128.5 4.7 80 101-182 44-124 (139)
226 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.3E-15 4.5E-20 128.4 9.3 118 150-267 11-156 (165)
227 1oo0_B CG8781-PA, drosophila Y 99.6 2.8E-15 9.4E-20 117.5 10.5 79 188-266 24-109 (110)
228 2dgt_A RNA-binding protein 30; 99.6 4.4E-15 1.5E-19 112.5 11.3 77 100-184 7-85 (92)
229 2dh8_A DAZ-associated protein 99.6 1.1E-15 3.7E-20 118.8 7.9 81 187-267 13-99 (105)
230 2cpf_A RNA binding motif prote 99.6 2.1E-15 7.2E-20 115.6 9.4 79 189-267 4-92 (98)
231 2dnp_A RNA-binding protein 14; 99.6 3.7E-15 1.3E-19 112.4 10.6 76 188-266 7-84 (90)
232 2dng_A Eukaryotic translation 99.6 5.3E-15 1.8E-19 114.5 11.7 79 188-267 13-97 (103)
233 2do0_A HnRNP M, heterogeneous 99.6 7.2E-15 2.5E-19 115.8 12.7 79 188-266 13-97 (114)
234 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.8E-20 119.2 8.5 77 101-181 26-105 (111)
235 1nu4_A U1A RNA binding domain; 99.6 8.9E-16 3E-20 117.5 7.1 79 101-182 6-90 (97)
236 2ytc_A PRE-mRNA-splicing facto 99.6 3.4E-15 1.2E-19 111.3 10.1 74 187-261 9-85 (85)
237 2jvr_A Nucleolar protein 3; RN 99.6 1.8E-15 6.1E-20 118.6 8.9 75 190-264 28-106 (111)
238 2lcw_A RNA-binding protein FUS 99.4 5.1E-17 1.7E-21 128.8 0.0 83 101-183 5-97 (116)
239 2dhg_A TRNA selenocysteine ass 99.6 1.4E-15 4.7E-20 118.0 8.1 81 187-267 6-94 (104)
240 2f3j_A RNA and export factor b 99.6 1.7E-15 5.8E-20 129.1 9.4 83 99-182 84-168 (177)
241 2jvo_A Nucleolar protein 3; nu 99.6 2.8E-15 9.6E-20 117.2 9.8 76 100-183 28-105 (108)
242 2cpd_A Apobec-1 stimulating pr 99.6 9.1E-15 3.1E-19 112.3 12.5 75 188-265 13-91 (99)
243 1fxl_A Paraneoplastic encephal 99.6 1.4E-15 4.7E-20 127.6 8.4 78 101-178 86-167 (167)
244 2dgp_A Bruno-like 4, RNA bindi 99.6 3.1E-15 1.1E-19 116.4 9.8 80 187-266 10-99 (106)
245 2err_A Ataxin-2-binding protei 99.6 2.3E-15 7.9E-20 117.9 9.1 77 187-263 26-107 (109)
246 2xnq_A Nuclear polyadenylated 99.6 5.2E-15 1.8E-19 113.3 10.7 74 100-181 19-95 (97)
247 2dnp_A RNA-binding protein 14; 99.6 5.5E-15 1.9E-19 111.5 10.6 76 100-183 6-83 (90)
248 1p27_B RNA-binding protein 8A; 99.6 2.2E-15 7.6E-20 117.2 8.6 78 188-265 21-105 (106)
249 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 4.1E-19 111.6 12.6 76 101-184 13-92 (99)
250 2cqh_A IGF-II mRNA-binding pro 99.6 2.5E-15 8.6E-20 114.0 8.6 78 100-184 5-86 (93)
251 2dgv_A HnRNP M, heterogeneous 99.6 2.3E-15 7.8E-20 114.0 8.4 79 188-266 6-89 (92)
252 2jrs_A RNA-binding protein 39; 99.6 2.5E-15 8.4E-20 117.5 8.8 79 186-264 22-107 (108)
253 2e5g_A U6 snRNA-specific termi 99.6 8.4E-15 2.9E-19 111.4 11.5 77 102-183 7-84 (94)
254 1wf1_A RNA-binding protein RAL 99.6 6.5E-15 2.2E-19 115.4 11.2 74 102-183 26-102 (110)
255 2la4_A Nuclear and cytoplasmic 99.6 2.2E-15 7.5E-20 116.2 8.2 74 189-263 26-101 (101)
256 1fjc_A Nucleolin RBD2, protein 99.6 1.9E-15 6.4E-20 115.4 7.4 78 101-183 14-93 (96)
257 2cpe_A RNA-binding protein EWS 99.6 5.6E-15 1.9E-19 116.3 10.4 80 187-266 12-106 (113)
258 1wg5_A Heterogeneous nuclear r 99.6 7.8E-15 2.7E-19 113.8 11.0 78 188-265 13-96 (104)
259 2ywk_A Putative RNA-binding pr 99.6 3.5E-15 1.2E-19 113.6 8.5 76 187-262 13-94 (95)
260 2i2y_A Fusion protein consists 99.6 5.6E-15 1.9E-19 122.4 10.4 78 100-182 70-149 (150)
261 2jvo_A Nucleolar protein 3; nu 99.6 4.7E-15 1.6E-19 115.9 9.3 77 187-266 28-106 (108)
262 3ns6_A Eukaryotic translation 99.6 6.7E-16 2.3E-20 119.0 4.2 78 189-266 5-96 (100)
263 1whx_A Hypothetical protein ri 99.6 4.2E-15 1.4E-19 116.8 8.8 74 102-181 9-84 (111)
264 2xnq_A Nuclear polyadenylated 99.6 9.6E-15 3.3E-19 111.8 10.6 74 188-264 20-96 (97)
265 3ucg_A Polyadenylate-binding p 99.6 6.4E-15 2.2E-19 110.7 9.4 74 190-263 6-85 (89)
266 2kxn_B Transformer-2 protein h 99.6 3.7E-15 1.2E-19 120.4 8.4 78 187-264 43-127 (129)
267 2mss_A Protein (musashi1); RNA 99.6 2.6E-15 9E-20 109.1 6.8 69 192-260 1-75 (75)
268 2kvi_A Nuclear polyadenylated 99.6 2.6E-15 8.8E-20 114.8 7.1 77 187-266 7-86 (96)
269 2khc_A Testis-specific RNP-typ 99.6 6.7E-15 2.3E-19 116.8 9.8 76 186-261 36-118 (118)
270 1x5p_A Negative elongation fac 99.6 2E-14 6.8E-19 110.0 12.0 78 100-185 12-91 (97)
271 2kvi_A Nuclear polyadenylated 99.6 4.4E-15 1.5E-19 113.5 8.3 75 101-183 8-85 (96)
272 2dis_A Unnamed protein product 99.6 1.4E-14 4.9E-19 113.2 11.4 79 189-267 7-96 (109)
273 1x5p_A Negative elongation fac 99.6 2.7E-14 9.3E-19 109.2 12.6 77 188-267 13-91 (97)
274 2cq2_A Hypothetical protein LO 99.6 7E-15 2.4E-19 115.2 9.2 80 187-267 22-110 (114)
275 2a3j_A U1 small nuclear ribonu 99.6 6.3E-15 2.2E-19 118.4 9.1 81 187-267 26-114 (127)
276 2e44_A Insulin-like growth fac 99.6 9.8E-15 3.3E-19 111.4 9.8 76 102-181 14-92 (96)
277 1nu4_A U1A RNA binding domain; 99.6 5.3E-15 1.8E-19 113.1 8.3 79 188-266 6-92 (97)
278 2cpi_A CCR4-NOT transcription 99.6 7.4E-15 2.5E-19 115.4 9.2 77 189-265 14-103 (111)
279 2cqh_A IGF-II mRNA-binding pro 99.6 4.9E-15 1.7E-19 112.4 7.7 77 188-266 6-86 (93)
280 3p5t_L Cleavage and polyadenyl 99.6 8.7E-16 3E-20 116.0 3.4 76 191-266 2-86 (90)
281 3beg_B Splicing factor, argini 99.6 5.3E-15 1.8E-19 117.0 8.1 72 190-263 16-94 (115)
282 3egn_A RNA-binding protein 40; 99.6 1.7E-15 5.7E-20 124.6 5.3 83 101-183 43-132 (143)
283 2div_A TRNA selenocysteine ass 99.6 6.7E-15 2.3E-19 113.0 8.4 77 188-264 7-95 (99)
284 1whx_A Hypothetical protein ri 99.6 5.7E-15 1.9E-19 116.0 8.1 74 190-264 10-85 (111)
285 2e5j_A Methenyltetrahydrofolat 99.6 9E-15 3.1E-19 111.9 8.7 77 188-265 17-96 (97)
286 2g4b_A Splicing factor U2AF 65 99.6 1.8E-14 6.2E-19 121.5 11.5 78 102-179 93-172 (172)
287 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.7E-15 1.6E-19 114.2 7.1 76 188-264 17-99 (100)
288 3ulh_A THO complex subunit 4; 99.6 1.2E-14 4E-19 113.3 9.5 74 188-261 27-106 (107)
289 2la6_A RNA-binding protein FUS 99.6 9.1E-15 3.1E-19 112.3 8.6 75 187-261 10-99 (99)
290 2fc9_A NCL protein; structure 99.6 2.4E-14 8.2E-19 110.3 11.0 77 187-266 12-94 (101)
291 2db1_A Heterogeneous nuclear r 99.6 5.7E-15 1.9E-19 117.4 7.6 79 188-266 15-101 (118)
292 1iqt_A AUF1, heterogeneous nuc 99.6 2.7E-15 9.2E-20 109.0 5.2 69 192-260 1-75 (75)
293 2yh0_A Splicing factor U2AF 65 99.6 3.5E-14 1.2E-18 122.6 13.2 84 100-183 111-196 (198)
294 2nlw_A Eukaryotic translation 99.6 9.8E-15 3.4E-19 113.5 8.6 77 189-265 14-102 (105)
295 3lqv_A PRE-mRNA branch site pr 99.6 7.7E-15 2.6E-19 115.9 8.2 79 188-266 6-88 (115)
296 2dgw_A Probable RNA-binding pr 99.6 1.9E-14 6.6E-19 108.6 10.0 77 188-265 8-89 (91)
297 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.5E-15 1.2E-19 109.0 5.6 70 191-260 1-76 (77)
298 2cqp_A RNA-binding protein 12; 99.6 5.3E-15 1.8E-19 113.3 6.8 78 187-264 12-96 (98)
299 1wg1_A KIAA1579 protein, homol 99.6 9.1E-15 3.1E-19 109.8 8.0 73 102-181 4-78 (88)
300 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-14 5.5E-19 115.7 9.7 75 190-264 28-107 (130)
301 3pgw_S U1-70K; protein-RNA com 99.5 1.4E-14 4.8E-19 140.3 11.2 82 101-182 100-183 (437)
302 2cq4_A RNA binding motif prote 99.5 4.9E-15 1.7E-19 116.9 6.4 78 190-267 25-108 (114)
303 2e5i_A Heterogeneous nuclear r 99.5 7.1E-14 2.4E-18 111.4 12.9 75 102-182 24-103 (124)
304 2cq2_A Hypothetical protein LO 99.5 8.6E-15 2.9E-19 114.6 7.4 75 101-181 23-106 (114)
305 1wez_A HnRNP H', FTP-3, hetero 99.5 9.1E-15 3.1E-19 113.0 7.5 76 188-264 13-93 (102)
306 2dnn_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 112.7 9.0 75 190-265 16-95 (109)
307 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 117.5 11.9 78 101-182 44-125 (164)
308 1fjc_A Nucleolin RBD2, protein 99.5 1.4E-14 4.8E-19 110.5 8.3 80 187-266 13-94 (96)
309 2m2b_A RNA-binding protein 10; 99.5 5.8E-15 2E-19 119.5 6.4 78 188-266 21-111 (131)
310 2jwn_A Embryonic polyadenylate 99.5 1.7E-14 5.8E-19 115.5 9.1 75 190-264 36-116 (124)
311 1p1t_A Cleavage stimulation fa 99.5 5E-15 1.7E-19 114.7 5.7 79 189-267 7-92 (104)
312 2e5g_A U6 snRNA-specific termi 99.5 4.8E-14 1.6E-18 107.2 11.1 77 190-266 8-85 (94)
313 3n9u_C Cleavage and polyadenyl 99.5 1.2E-14 4.2E-19 121.1 8.4 75 190-264 55-138 (156)
314 2kt5_A RNA and export factor-b 99.5 4.2E-14 1.4E-18 113.3 11.1 79 188-266 33-117 (124)
315 3zzy_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 113.7 10.4 76 102-182 27-107 (130)
316 2ek1_A RNA-binding protein 12; 99.5 5.1E-15 1.8E-19 112.7 5.0 75 188-262 13-94 (95)
317 2voo_A Lupus LA protein; RNA-b 99.5 4.1E-14 1.4E-18 122.3 11.1 79 102-181 108-187 (193)
318 2fc8_A NCL protein; structure 99.5 4.6E-14 1.6E-18 108.9 10.3 80 187-266 12-95 (102)
319 2krb_A Eukaryotic translation 99.5 9.7E-15 3.3E-19 107.8 6.1 67 191-257 2-80 (81)
320 2hzc_A Splicing factor U2AF 65 99.5 3E-14 1E-18 106.5 8.9 70 102-177 5-86 (87)
321 2cpx_A Hypothetical protein FL 99.5 2.3E-14 7.9E-19 113.1 8.6 80 188-267 23-109 (115)
322 2e44_A Insulin-like growth fac 99.5 4E-14 1.4E-18 108.0 9.3 76 189-264 14-93 (96)
323 1x5o_A RNA binding motif, sing 99.5 3.3E-14 1.1E-18 112.1 9.1 76 188-263 23-112 (114)
324 2xs2_A Deleted in azoospermia- 99.5 1E-14 3.4E-19 112.7 5.9 79 189-267 8-90 (102)
325 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.6E-14 1.9E-18 114.8 10.6 73 188-260 61-140 (140)
326 2hgl_A HNRPF protein, heteroge 99.5 9.3E-15 3.2E-19 118.8 5.8 78 188-265 42-127 (136)
327 2lmi_A GRSF-1, G-rich sequence 99.5 8.4E-15 2.9E-19 114.3 5.2 79 188-266 9-95 (107)
328 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.9E-19 115.9 6.6 75 189-264 41-122 (126)
329 2e5i_A Heterogeneous nuclear r 99.5 7.2E-14 2.4E-18 111.4 10.5 73 191-264 26-103 (124)
330 2diu_A KIAA0430 protein; struc 99.5 6.4E-14 2.2E-18 104.5 9.4 71 103-183 8-86 (96)
331 3tyt_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 122.6 10.5 76 189-264 3-81 (205)
332 3beg_B Splicing factor, argini 99.5 2.1E-14 7.2E-19 113.5 7.1 73 102-181 15-94 (115)
333 1wg1_A KIAA1579 protein, homol 99.5 2.8E-14 9.5E-19 107.1 7.4 73 190-264 5-79 (88)
334 1x4e_A RNA binding motif, sing 99.5 7.6E-15 2.6E-19 109.4 4.2 72 189-260 4-82 (85)
335 2ki2_A SS-DNA binding protein 99.5 5.5E-15 1.9E-19 111.4 3.5 75 191-266 2-83 (90)
336 1fj7_A Nucleolin RBD1, protein 99.5 9.2E-15 3.2E-19 112.7 4.4 77 189-266 16-98 (101)
337 1sjr_A Polypyrimidine tract-bi 99.5 4.2E-14 1.4E-18 117.6 8.6 75 190-264 46-125 (164)
338 2bz2_A Negative elongation fac 99.5 7.3E-14 2.5E-18 111.4 9.0 76 100-183 36-113 (121)
339 2pe8_A Splicing factor 45; RRM 99.5 1.6E-13 5.4E-18 106.5 10.5 80 102-181 7-94 (105)
340 2dha_A FLJ20171 protein; RRM d 99.5 1.4E-14 4.8E-19 115.6 4.7 77 190-266 23-108 (123)
341 2voo_A Lupus LA protein; RNA-b 99.5 1.3E-13 4.4E-18 119.1 11.0 113 154-266 63-190 (193)
342 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.9E-18 103.3 9.3 70 189-259 5-86 (87)
343 2dnl_A Cytoplasmic polyadenyla 99.5 2.6E-13 8.8E-18 107.0 11.5 76 189-265 7-90 (114)
344 2lcw_A RNA-binding protein FUS 99.2 2.9E-15 9.9E-20 118.6 0.0 79 188-266 5-98 (116)
345 1wel_A RNA-binding protein 12; 99.5 1.7E-14 5.8E-19 115.6 3.4 77 189-265 24-106 (124)
346 2diu_A KIAA0430 protein; struc 99.5 1.7E-13 5.7E-18 102.2 8.0 74 189-267 7-88 (96)
347 2bz2_A Negative elongation fac 99.5 1.5E-13 5.1E-18 109.6 8.3 77 188-267 37-115 (121)
348 3egn_A RNA-binding protein 40; 99.4 1E-13 3.6E-18 113.8 7.1 80 188-267 43-134 (143)
349 2f3j_A RNA and export factor b 99.4 2.2E-13 7.6E-18 115.9 8.9 78 188-265 86-169 (177)
350 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.3E-12 7.7E-17 98.8 13.0 78 103-185 10-94 (100)
351 3u1l_A PRE-mRNA-splicing facto 99.4 2.3E-13 7.8E-18 120.6 8.2 77 100-182 131-230 (240)
352 1fje_B Nucleolin RBD12, protei 99.4 3.5E-13 1.2E-17 114.0 9.0 76 101-181 97-174 (175)
353 2adc_A Polypyrimidine tract-bi 99.4 8.5E-13 2.9E-17 117.1 11.3 76 101-181 149-228 (229)
354 2dit_A HIV TAT specific factor 99.4 3E-12 1E-16 100.5 10.9 80 100-183 12-104 (112)
355 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.8E-12 9.7E-17 98.3 10.3 67 200-266 27-93 (100)
356 2dit_A HIV TAT specific factor 99.4 3.9E-12 1.3E-16 99.9 11.2 81 187-267 12-106 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.4 5.7E-13 2E-17 118.0 7.1 101 165-266 108-232 (240)
358 2pe8_A Splicing factor 45; RRM 99.4 2.8E-12 9.7E-17 99.3 9.2 75 189-263 7-94 (105)
359 2j8a_A Histone-lysine N-methyl 99.3 1E-12 3.4E-17 103.7 6.3 72 191-262 3-95 (136)
360 3sde_A Paraspeckle component 1 99.3 3.5E-12 1.2E-16 115.4 10.6 75 188-263 20-96 (261)
361 1qm9_A Polypyrimidine tract-bi 99.3 1.7E-12 5.7E-17 112.2 8.1 76 190-265 3-81 (198)
362 3pgw_A U1-A; protein-RNA compl 99.3 4.3E-12 1.5E-16 115.9 11.0 79 187-265 6-92 (282)
363 3ue2_A Poly(U)-binding-splicin 99.3 4.7E-12 1.6E-16 100.1 8.8 79 102-180 19-108 (118)
364 3v4m_A Splicing factor U2AF 65 99.3 3.9E-12 1.3E-16 98.6 7.6 80 102-181 4-97 (105)
365 1jmt_A Splicing factor U2AF 35 99.3 1.3E-12 4.3E-17 101.2 4.2 70 108-178 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.3 1.2E-11 4.2E-16 95.8 8.7 76 189-264 4-98 (105)
367 3tht_A Alkylated DNA repair pr 99.2 8.4E-11 2.9E-15 109.6 10.3 75 187-262 15-98 (345)
368 1jmt_A Splicing factor U2AF 35 99.2 1.3E-11 4.4E-16 95.5 3.6 67 195-261 20-104 (104)
369 3ue2_A Poly(U)-binding-splicin 99.2 5.4E-11 1.8E-15 94.0 7.2 75 189-263 19-109 (118)
370 3tht_A Alkylated DNA repair pr 99.1 8.9E-11 3.1E-15 109.4 9.2 73 101-179 16-97 (345)
371 3s6e_A RNA-binding protein 39; 99.1 1.9E-10 6.5E-15 90.2 9.3 76 189-264 6-94 (114)
372 3s6e_A RNA-binding protein 39; 99.0 5.6E-10 1.9E-14 87.5 8.1 76 101-180 5-92 (114)
373 1owx_A Lupus LA protein, SS-B, 99.0 5.6E-10 1.9E-14 87.8 6.6 79 187-266 15-99 (121)
374 2dnr_A Synaptojanin-1; RRM dom 98.9 3.8E-09 1.3E-13 78.0 8.0 72 102-181 6-86 (91)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 6.7E-09 2.3E-13 76.7 9.2 73 188-263 5-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.9 4.6E-09 1.6E-13 82.6 7.1 73 101-179 16-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.7 3.3E-08 1.1E-12 73.3 7.0 71 102-180 14-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.6 3.5E-08 1.2E-12 73.2 5.4 73 187-262 12-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.6 1.7E-07 5.7E-12 82.3 8.5 66 115-180 141-212 (222)
380 2dhx_A Poly (ADP-ribose) polym 98.5 1.6E-06 5.4E-11 65.1 11.0 88 101-203 6-99 (104)
381 3dxb_A Thioredoxin N-terminall 98.3 5.7E-07 2E-11 78.8 5.4 62 202-263 141-213 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.2 8.4E-06 2.9E-10 61.7 8.7 70 190-260 21-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 3.7E-05 1.3E-09 57.7 9.7 74 190-266 8-87 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.0 2.1E-05 7.1E-10 59.5 8.3 70 102-177 20-96 (117)
385 1wey_A Calcipressin 1; structu 97.3 0.00057 1.9E-08 51.4 6.8 74 190-264 5-85 (104)
386 1whv_A Poly(A)-specific ribonu 97.2 0.0013 4.4E-08 48.7 7.7 52 103-163 16-67 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.0 0.0049 1.7E-07 47.6 9.4 73 190-264 24-98 (119)
388 1wey_A Calcipressin 1; structu 96.9 0.0026 8.8E-08 47.9 6.7 74 102-181 4-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.5 0.0077 2.6E-07 46.5 7.0 70 102-178 23-94 (119)
390 3p3d_A Nucleoporin 53; structu 96.2 0.0078 2.7E-07 47.2 5.7 72 191-263 8-99 (132)
391 1whv_A Poly(A)-specific ribonu 96.1 0.013 4.5E-07 43.3 6.1 53 190-246 16-68 (100)
392 3pq1_A Poly(A) RNA polymerase; 96.0 0.0032 1.1E-07 60.5 3.2 56 190-246 53-108 (464)
393 3ctr_A Poly(A)-specific ribonu 96.0 0.0092 3.2E-07 44.3 4.8 51 105-163 7-57 (101)
394 1uw4_A UPF3X; nonsense mediate 96.0 0.02 6.9E-07 42.1 6.6 56 191-246 2-64 (91)
395 1uw4_A UPF3X; nonsense mediate 95.9 0.031 1E-06 41.1 7.6 60 104-163 2-63 (91)
396 3ctr_A Poly(A)-specific ribonu 95.6 0.012 4.3E-07 43.6 4.3 52 191-246 7-58 (101)
397 3pq1_A Poly(A) RNA polymerase; 95.6 0.0063 2.2E-07 58.5 3.4 56 102-163 52-107 (464)
398 2l08_A Regulator of nonsense t 94.3 0.089 3E-06 39.0 5.8 57 190-246 9-72 (97)
399 3p3d_A Nucleoporin 53; structu 93.4 0.092 3.2E-06 41.1 4.6 76 103-179 7-97 (132)
400 2l08_A Regulator of nonsense t 90.2 0.24 8.1E-06 36.7 3.5 62 102-163 8-71 (97)
401 3d45_A Poly(A)-specific ribonu 82.3 3 0.0001 40.5 7.6 54 102-164 439-492 (507)
402 3d45_A Poly(A)-specific ribonu 71.3 9.1 0.00031 37.1 7.4 53 190-246 440-492 (507)
403 4eyt_A Telomerase associated p 62.1 40 0.0014 24.1 8.1 72 190-264 12-92 (129)
404 3zzp_A TS9, ribosomal protein 39.2 54 0.0019 22.7 4.9 59 147-214 7-68 (77)
405 2pk2_A Cyclin-T1, protein TAT; 37.0 7.2 0.00025 36.0 0.0 13 200-212 227-239 (358)
406 3lpe_A Putative transcription 32.3 1.3E+02 0.0046 21.3 6.5 30 217-246 40-69 (92)
407 4e8u_A Putative uncharacterize 28.6 1.4E+02 0.0047 24.2 6.3 50 105-157 14-74 (172)
408 1cn3_F Fragment of coat protei 27.2 37 0.0013 17.9 1.7 10 329-338 9-18 (29)
409 3ts2_A Protein LIN-28 homolog 22.4 20 0.00067 28.5 0.2 28 205-235 2-29 (148)
410 4eyt_A Telomerase associated p 20.8 2.3E+02 0.008 20.1 8.1 68 102-177 11-78 (129)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.7e-34 Score=247.28 Aligned_cols=169 Identities=33% Similarity=0.487 Sum_probs=145.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEec
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRI 177 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~ 177 (363)
.+...++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+||. +++.+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 44578999999999999999999999999999999999999999999999999999999999995 57889999999999
Q ss_pred ccCCCCCC---CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CC
Q psy15045 178 PESTKIGT---EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HV 248 (363)
Q Consensus 178 a~~~~~~~---~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~ 248 (363)
+....... .....++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+.. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~ 168 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCc
Confidence 87664322 2233589999999999999999999999999999999865 478999999999999999987 78
Q ss_pred eeCCeEEEEEEccCCCccc
Q psy15045 249 NIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 249 ~~~g~~l~V~~a~~~~~~~ 267 (363)
.|+|+.|.|.++.++.+..
T Consensus 169 ~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 169 TVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EETTEECEEEECC------
T ss_pred EECCEEEEEEecCChhHhc
Confidence 9999999999999988765
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.7e-34 Score=255.09 Aligned_cols=165 Identities=20% Similarity=0.288 Sum_probs=148.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|| +++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 5689999999999999999999999999999999999999999999999999999999999 46888999999999987
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeE
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKK 254 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~ 254 (363)
...... .....+|||+|||+.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|++. +..|+|++
T Consensus 94 ~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 94 RDPSLR-KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp CCTHHH-HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccccc-ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 653221 122478999999999999999999999999999999865 689999999999999999986 78999999
Q ss_pred EEEEEccCCCccc
Q psy15045 255 VVVMEATPKKKMN 267 (363)
Q Consensus 255 l~V~~a~~~~~~~ 267 (363)
|.|.+|.++.++.
T Consensus 173 i~V~~a~~~~~~~ 185 (213)
T 4f02_A 173 VFVGRFKSRKERE 185 (213)
T ss_dssp CEEEECCCHHHHH
T ss_pred EEEEEcCCCcccc
Confidence 9999999876654
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-33 Score=239.33 Aligned_cols=160 Identities=26% Similarity=0.573 Sum_probs=146.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccCC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~~ 181 (363)
++++|||+|||+++++++|+++|++||+|.+|++++++.+|.++|||||+|.+.++|.+|+.+++.++|+.|.|.++.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 46899999999999999999999999999999999999899999999999999999999999888999999999998765
Q ss_pred CCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEE
Q psy15045 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKV 255 (363)
Q Consensus 182 ~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l 255 (363)
... ...++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++. +..++|++|
T Consensus 82 ~~~---~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i 158 (167)
T 2cjk_A 82 DEQ---DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKI 158 (167)
T ss_dssp HHH---HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCE
T ss_pred hhc---cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEE
Confidence 322 23579999999999999999999999999999999865 579999999999999999987 578999999
Q ss_pred EEEEccCCC
Q psy15045 256 VVMEATPKK 264 (363)
Q Consensus 256 ~V~~a~~~~ 264 (363)
.|.+|.|+.
T Consensus 159 ~V~~a~pk~ 167 (167)
T 2cjk_A 159 EIKRAEPRH 167 (167)
T ss_dssp EEEECCCCC
T ss_pred EEeecCCCC
Confidence 999998863
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.5e-31 Score=225.81 Aligned_cols=157 Identities=19% Similarity=0.330 Sum_probs=142.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~~ 181 (363)
++|||+|||.++++++|+++|++||+|.+|++++++ ++.++|||||+|.+.++|.+|+ +++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999996 5789999999999999999999 4688999999999999876
Q ss_pred CCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeE
Q psy15045 182 KIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKK 254 (363)
Q Consensus 182 ~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~ 254 (363)
.. .......+|||+|||..+++++|+++|++||.|..+.+..+ ++|+|||+|.+.++|.+|+.. +..++|++
T Consensus 80 ~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 80 QQ-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 54 33445689999999999999999999999999999999754 578999999999999999986 78999999
Q ss_pred EEEEEccC
Q psy15045 255 VVVMEATP 262 (363)
Q Consensus 255 l~V~~a~~ 262 (363)
|.|.||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=2.3e-31 Score=225.34 Aligned_cols=156 Identities=26% Similarity=0.384 Sum_probs=143.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
+.++|||+|||+++++++|+++|++||+|.+|++++++.++.++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999889999999999999999999999 46889999999999998
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
+.... ...++|||+|||..+++++|+++|++||.|..+.+.++ ++|+|||+|.+.++|.+|+.. +..++|
T Consensus 82 ~~~~~---~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGES---IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSST---TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCccc---CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 76433 34589999999999999999999999999999999865 368999999999999999996 778877
Q ss_pred --eEEEEEEc
Q psy15045 253 --KKVVVMEA 260 (363)
Q Consensus 253 --~~l~V~~a 260 (363)
++|+|.||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=4.1e-31 Score=223.33 Aligned_cols=155 Identities=23% Similarity=0.378 Sum_probs=141.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~ 180 (363)
.++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998899999999999999999999994 68899999999999886
Q ss_pred CCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCe
Q psy15045 181 TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDK 253 (363)
Q Consensus 181 ~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~ 253 (363)
... ....++|||+|||..+++++|+++|++||.|..+.+..+ ++|+|||+|.+.++|.+|++. +..++|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 643 234579999999999999999999999999999999865 379999999999999999996 7789996
Q ss_pred --EEEEEEc
Q psy15045 254 --KVVVMEA 260 (363)
Q Consensus 254 --~l~V~~a 260 (363)
+|.|.||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 4888886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=6.3e-31 Score=231.97 Aligned_cols=165 Identities=19% Similarity=0.376 Sum_probs=145.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||.++++++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999994 6889999999999877
Q ss_pred CCCCCC--------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc
Q psy15045 180 STKIGT--------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 180 ~~~~~~--------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~ 246 (363)
...... .....++|||+|||..+++++|+++|++||.|..|.+.++ ++|||||+|.+.++|.+|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 654221 1233589999999999999999999999999999999865 478999999999999999996
Q ss_pred --CCeeCCeEEEEEEccCCCcc
Q psy15045 247 --HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 247 --~~~~~g~~l~V~~a~~~~~~ 266 (363)
+..|+|+.|.|.++.++...
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSST
T ss_pred ccCCEeCCcEEEEEEecCCCCC
Confidence 78999999999999887544
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2.3e-30 Score=220.57 Aligned_cols=158 Identities=28% Similarity=0.435 Sum_probs=136.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC--CceeEEEEEeCCHHHHHHHHh--cccccC---Ceeee
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG--RSKGFGFIRFSSHESALKAML--KKHKIG---NRICD 174 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~al~--~~~~~~---g~~i~ 174 (363)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.++ .++|||||+|.+.++|.+|+. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 899999999999999999994 454443 56677
Q ss_pred EecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CC
Q psy15045 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HV 248 (363)
Q Consensus 175 v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~ 248 (363)
+.++..... .....++|||+|||+.+|+++|+++|++||.|..+.+.++ ++|||||+|.+.++|.+|+.. +.
T Consensus 82 ~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 82 MKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp EEECGGGCC--SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred Ecccccccc--ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 777665533 3345689999999999999999999999999999999876 578999999999999999987 44
Q ss_pred eeC---CeEEEEEEcc
Q psy15045 249 NIK---DKKVVVMEAT 261 (363)
Q Consensus 249 ~~~---g~~l~V~~a~ 261 (363)
.+. +++|.|.||.
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 454 4999999974
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=5.1e-31 Score=225.10 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=141.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
+...++|||+|||.++++++|+++|.+||.+.. .++.+..++.++|||||+|.+.++|.+|+ +++..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 457899999999999999999999999998766 34445567889999999999999999999 4688999999999999
Q ss_pred cCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 179 ~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
.++... .....++|||+|||..+++++|+++|++||.|..+.....++|||||+|.+.++|.+|+.. +..|+|++|.
T Consensus 89 ~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 167 (175)
T 1fje_B 89 KGRDSK-KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 167 (175)
T ss_dssp CCSSCS-TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred CCcccc-ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 876433 3345689999999999999999999999999988822234789999999999999999996 7899999999
Q ss_pred EEEccCC
Q psy15045 257 VMEATPK 263 (363)
Q Consensus 257 V~~a~~~ 263 (363)
|.|+.++
T Consensus 168 v~~a~~k 174 (175)
T 1fje_B 168 LYYTGEK 174 (175)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 9999886
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.1e-29 Score=233.74 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=153.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||+++++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+ +++..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5679999999999999999999999999999999999889999999999999999999999 46889999999999999
Q ss_pred CCCCCCCCCCcceEEEcCCCcCC-CHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDL-TESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~-t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
+..........++|||+|||+++ ++++|+++|++||.|..+.+.++ ++|+|||+|.+.++|.+|+.. +..|+|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 88766666678999999999995 99999999999999999998875 578999999999999999996 789999
Q ss_pred eEEEEEEccCCCccc
Q psy15045 253 KKVVVMEATPKKKMN 267 (363)
Q Consensus 253 ~~l~V~~a~~~~~~~ 267 (363)
++|.|.|+.++..+.
T Consensus 254 ~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 254 SHLRVSFCAPGPPGR 268 (284)
T ss_dssp EECEEEECCSSSCHH
T ss_pred eEEEEEEecCCCccc
Confidence 999999999987654
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.3e-29 Score=230.39 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=140.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeee
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLK----EYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRIC 173 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i 173 (363)
....++|||+|||.++++++|+ ++|++||.|.+|++++ ++.++|||||+|.+.++|.+|+ +++..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3468899999999999999966 8999999999999875 6889999999999999999999 46889999999
Q ss_pred eEecccCCCCC---------------------------------------------------------------------
Q psy15045 174 DVRIPESTKIG--------------------------------------------------------------------- 184 (363)
Q Consensus 174 ~v~~a~~~~~~--------------------------------------------------------------------- 184 (363)
.|.++......
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998654310
Q ss_pred ---------------------------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC
Q psy15045 185 ---------------------------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP 225 (363)
Q Consensus 185 ---------------------------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~ 225 (363)
...+..++|||+|||..+++++|+++|++||.|.+|.+.++
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 11123578999999999999999999999999999999988
Q ss_pred CCcEEEEEecCHHHHHHHHhc--CCeeC-CeEEEEEEcc
Q psy15045 226 FREFAFVTFELDSVAKSLIGQ--HVNIK-DKKVVVMEAT 261 (363)
Q Consensus 226 ~~g~afV~F~~~~~A~~Ai~~--~~~~~-g~~l~V~~a~ 261 (363)
.+|||||+|.+.++|.+|+.. +..|+ |+.|+|.|++
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 779999999999999999997 77898 9999999986
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.3e-29 Score=224.60 Aligned_cols=158 Identities=17% Similarity=0.254 Sum_probs=140.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|+ +++..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3678999999999 99999999999999999999999875 789999999999999999 468899999999999
Q ss_pred ccCCCCC--------------------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCC-CeEEEEecC
Q psy15045 178 PESTKIG--------------------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYG-AVVDVLIPK 224 (363)
Q Consensus 178 a~~~~~~--------------------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G-~i~~i~i~~ 224 (363)
+...... ...++.++|||+|||+.+++++|+++|++|| .|..|.+..
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 8754110 0012368999999999999999999999999 999999977
Q ss_pred CCCcEEEEEecCHHHHHHHHhc--CCeeC-CeEEEEEEccCC
Q psy15045 225 PFREFAFVTFELDSVAKSLIGQ--HVNIK-DKKVVVMEATPK 263 (363)
Q Consensus 225 ~~~g~afV~F~~~~~A~~Ai~~--~~~~~-g~~l~V~~a~~~ 263 (363)
+.+|+|||+|.+.++|.+|+.. +..++ |++|.|.|++++
T Consensus 187 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 6799999999999999999996 77888 999999999874
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.8e-29 Score=221.33 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIP-WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
++++|||+||| ..+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|| +++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56799999999 899999999999999999999998763 799999999999999999 5799999999999998
Q ss_pred cCCCCCC----------------------------------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCe--EEEEe
Q psy15045 179 ESTKIGT----------------------------------EEPVASKVFVGSLTPDLTESDLREHFEYYGAV--VDVLI 222 (363)
Q Consensus 179 ~~~~~~~----------------------------------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i--~~i~i 222 (363)
..+...+ ..+++++|||+|||+++|+++|+++|++||.| ..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6432100 01235689999999999999999999999999 89998
Q ss_pred cCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCe----EEEEEEc
Q psy15045 223 PKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDK----KVVVMEA 260 (363)
Q Consensus 223 ~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~----~l~V~~a 260 (363)
+.+ ++|+|||+|.+.++|.+|+.. +..|.|+ ++.|++|
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 865 468999999999999999997 6678776 5666664
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=5.2e-29 Score=211.77 Aligned_cols=151 Identities=24% Similarity=0.413 Sum_probs=134.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQF----G-------TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIG 169 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~ 169 (363)
+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ +++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 7777776543 799999999999999999 4588899
Q ss_pred CeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHH
Q psy15045 170 NRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244 (363)
Q Consensus 170 g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai 244 (363)
|+.|.|.++...... ...++|||+|||+.+++++|+++|++||.|..+.+.++ ++|||||+|.+.++|.+|+
T Consensus 77 g~~i~v~~~~~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL---PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TEECEEECCSSCCCC---TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CceeeecCCcccCCC---CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 999999998765332 23589999999999999999999999999999999866 3789999999999999999
Q ss_pred hc--CCeeCCeEEEEEEcc
Q psy15045 245 GQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 245 ~~--~~~~~g~~l~V~~a~ 261 (363)
.. +..++|++|.|.+|.
T Consensus 154 ~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHcCCCEECCeEEEEEeCC
Confidence 96 789999999999974
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.1e-29 Score=219.58 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.+++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|+ +++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 467999999999 99999999999999999999998875 789999999999999999 4688999999999998
Q ss_pred cCCCCC--------------------------------CCCCCcceEEEcCCCcCCCHHHHHHHhhcCC-CeEEEEecCC
Q psy15045 179 ESTKIG--------------------------------TEEPVASKVFVGSLTPDLTESDLREHFEYYG-AVVDVLIPKP 225 (363)
Q Consensus 179 ~~~~~~--------------------------------~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G-~i~~i~i~~~ 225 (363)
...... ...++.++|||+|||..+++++|+++|++|| .|..+.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 754210 0013368999999999999999999999999 9999999877
Q ss_pred CCcEEEEEecCHHHHHHHHhc--CCeeC-CeEEEEEEccCC
Q psy15045 226 FREFAFVTFELDSVAKSLIGQ--HVNIK-DKKVVVMEATPK 263 (363)
Q Consensus 226 ~~g~afV~F~~~~~A~~Ai~~--~~~~~-g~~l~V~~a~~~ 263 (363)
.+|+|||+|.+.++|.+|+.. +..++ |++|.|.|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 799999999999999999996 77888 999999998874
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=8.3e-29 Score=215.38 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=136.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQF----G-------TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIG 169 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~ 169 (363)
..++|||+|||+++++++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+ +++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5666555 345899999999999999999 4688899
Q ss_pred CeeeeEecccCCCCCC-----------------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CC
Q psy15045 170 NRICDVRIPESTKIGT-----------------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FR 227 (363)
Q Consensus 170 g~~i~v~~a~~~~~~~-----------------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~ 227 (363)
|+.|.|.++....... .....++|||+|||+.+++++|+++|++||.|..+.+.++ ++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999987653211 1134689999999999999999999999999999999866 38
Q ss_pred cEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 228 EFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 228 g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
|||||+|.+.++|.+|+.. +..|+|+.|.|.++.++..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999996 7899999999999998754
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4.4e-28 Score=223.96 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=168.2
Q ss_pred CCCCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccccCCC----CCCCCC
Q psy15045 25 EDDGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRS----YPDNSG 99 (363)
Q Consensus 25 ~~~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 99 (363)
++..++++++|-.......-. .|...+....++++.+... +.|+++..|... ..+..+...... ..-.-.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~---~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARY---DGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSH---HHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCH---HHHHHHHHhCCcEeCCcEEEEE
Confidence 345688999886655522111 2333566777777765533 356663333322 122222211000 000001
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
....++|||+|||+++++++|+++|++|| .|..|.++.++. +.++|||||+|.+.++|.+|+. ++..+.|+.|.|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 23578999999999999999999999999 999999999864 8899999999999999999994 6889999999999
Q ss_pred cccCCCCCC----CCCCcceEEEcCCCcC-CCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHh
Q psy15045 177 IPESTKIGT----EEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIG 245 (363)
Q Consensus 177 ~a~~~~~~~----~~~~~~~l~V~nlp~~-~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~ 245 (363)
++.+..... .....++|||+|||+. +++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 988765432 2244689999999999 999999999999999999999865 4689999999999999999
Q ss_pred c--CCeeCCeEEEEEEccCCC
Q psy15045 246 Q--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 246 ~--~~~~~g~~l~V~~a~~~~ 264 (363)
. +..|+|++|.|.|+.++.
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GGTTEEETTEEEEEEECCCCC
T ss_pred HhcCCEECCcEEEEEEecCCC
Confidence 6 789999999999998863
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=7.4e-28 Score=222.43 Aligned_cols=159 Identities=18% Similarity=0.319 Sum_probs=135.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeee
Q psy15045 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICD 174 (363)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~ 174 (363)
....+...++|||+|||+++++++|+++|++||+|.+|+|++++.. ++|||||+|.+.++|.+|+ +++..+.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 3344567899999999999999999999999999999999998633 5899999999999999999 568899999999
Q ss_pred EecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCC-CeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--C
Q psy15045 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG-AVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--H 247 (363)
Q Consensus 175 v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G-~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~ 247 (363)
|.++. .++|||+|||+.+++++|+++|++|| .|..|.++++ ++|||||+|.+.++|.+|+.. +
T Consensus 112 v~~~~----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 112 VSHLT----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEECC----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEECC----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 99864 36999999999999999999999999 9999999864 689999999999999999995 7
Q ss_pred CeeCCeEEEEEEccCCCcc
Q psy15045 248 VNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 248 ~~~~g~~l~V~~a~~~~~~ 266 (363)
..++|+.|.|.++.+....
T Consensus 182 ~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CEETTEECEEEECCCC---
T ss_pred CEeCCcEEEEEECCCCccc
Confidence 8999999999999876544
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.1e-27 Score=218.03 Aligned_cols=152 Identities=24% Similarity=0.343 Sum_probs=136.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++|+++|+++|++||.|.+|.|.++ +|||||+|.+.++|.+|+ +++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 346789999999999999999999999999999999754 799999999999999999 468899999999999
Q ss_pred ccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc---CCee
Q psy15045 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ---HVNI 250 (363)
Q Consensus 178 a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~---~~~~ 250 (363)
+.+. .+|||+|||+.+|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+.. +..+
T Consensus 93 a~~~---------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 93 ATHG---------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CCCS---------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cccC---------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 8754 68999999999999999999999999999999865 589999999999999999987 3344
Q ss_pred C---CeEEEEEEccCCCcc
Q psy15045 251 K---DKKVVVMEATPKKKM 266 (363)
Q Consensus 251 ~---g~~l~V~~a~~~~~~ 266 (363)
. +++|.|.++.+....
T Consensus 164 ~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SSSSCCBCEEEECCCEESS
T ss_pred ecCCCceEEEeeccccCcc
Confidence 3 999999999886544
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=7.2e-27 Score=214.94 Aligned_cols=148 Identities=16% Similarity=0.335 Sum_probs=134.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||+++++++|+++|++|| |.++.+ +.++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999887 345899999999999999999 46888999999999865
Q ss_pred CCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 180 ~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
.. .+|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|+.. +..++|
T Consensus 94 ~~---------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 TD---------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CS---------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CC---------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 43 79999999999999999999999999999998754 478999999999999999976 789999
Q ss_pred eEEEEEEccCCCc
Q psy15045 253 KKVVVMEATPKKK 265 (363)
Q Consensus 253 ~~l~V~~a~~~~~ 265 (363)
++|.|.++.++..
T Consensus 165 ~~i~v~~a~~~~~ 177 (284)
T 3smz_A 165 RTLYVHWTDAGQL 177 (284)
T ss_dssp EECEEEECCGGGC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987653
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.5e-22 Score=157.98 Aligned_cols=104 Identities=21% Similarity=0.376 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+|| ++++.++|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999984 558999999999999999999 4688999999999998
Q ss_pred cCCCCCCC-----CCCcceEEEcCCCcCCCHHH
Q psy15045 179 ESTKIGTE-----EPVASKVFVGSLTPDLTESD 206 (363)
Q Consensus 179 ~~~~~~~~-----~~~~~~l~V~nlp~~~t~e~ 206 (363)
.++..... .....+|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 87653222 12246899999999999864
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.9e-20 Score=155.75 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=108.1
Q ss_pred CCCceeEEEEEeCCHHHHHHHH--h-cccccCCeeeeEecccCCC-------------CCCCCCCcceEEEcCCCcCCCH
Q psy15045 141 TGRSKGFGFIRFSSHESALKAM--L-KKHKIGNRICDVRIPESTK-------------IGTEEPVASKVFVGSLTPDLTE 204 (363)
Q Consensus 141 ~g~~~G~afV~f~~~~~a~~al--~-~~~~~~g~~i~v~~a~~~~-------------~~~~~~~~~~l~V~nlp~~~t~ 204 (363)
....+|+++|+|.+.++|++|+ + ++..++| .+.+.++.... ........++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999998 3 7889999 99999876531 1223344789999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 205 SDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 205 e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
++|+++|++||.|.+|.++++++|||||+|.+.++|.+|+.. +..|+|++|.|.++.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999985 789999999999998864
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=6.2e-20 Score=153.83 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=103.4
Q ss_pred EEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc---ccccCCee------eeEecccC---CCCCCCCCCcceEEEcCCC
Q psy15045 132 FANVKVDKNTGRSKGFGFIRFSSHESALKAMLK---KHKIGNRI------CDVRIPES---TKIGTEEPVASKVFVGSLT 199 (363)
Q Consensus 132 ~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~---~~~~~g~~------i~v~~a~~---~~~~~~~~~~~~l~V~nlp 199 (363)
.++|+.+. ..++|||||+|.+.++|++|+.. ...+++.. ........ ..........++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777774 36899999999999999999843 22233322 11111111 1112223446899999999
Q ss_pred cCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 200 PDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 200 ~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
+.+++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+.. +..|+|++|.|.++.++....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999999999999999999875 689999999999999999986 779999999999999875543
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=141.44 Aligned_cols=79 Identities=28% Similarity=0.520 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
.+++|||+|||+++|+++|+++|++||+|.+|+|++++.+|.++|||||+|.+.++|.+|+ +++..++|+.|.|.+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5789999999999999999999999999999999999999999999999999999999999 46899999999999987
Q ss_pred C
Q psy15045 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-20 Score=138.37 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh---cccccCCeeeeEecc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML---KKHKIGNRICDVRIP 178 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~---~~~~~~g~~i~v~~a 178 (363)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++.++.++|||||+|.+.++|.+||. ++..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999994 355799999999999
Q ss_pred cCCCCC
Q psy15045 179 ESTKIG 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887544
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=137.87 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.+.++|||+|||+++++++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|+ +++..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999 4789999999999998
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 755
No 27
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=131.72 Aligned_cols=84 Identities=46% Similarity=0.897 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccC
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~ 180 (363)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.+++.++|+.|.|.++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 46789999999999999999999999999999999999989999999999999999999999988999999999999988
Q ss_pred CCCC
Q psy15045 181 TKIG 184 (363)
Q Consensus 181 ~~~~ 184 (363)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cqg_A 93 KQSQ 96 (103)
T ss_dssp TCCC
T ss_pred CCcC
Confidence 7543
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=131.43 Aligned_cols=86 Identities=28% Similarity=0.500 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a 178 (363)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4477899999999999999999999999999999999999899999999999999999999994 788999999999999
Q ss_pred cCCCCCC
Q psy15045 179 ESTKIGT 185 (363)
Q Consensus 179 ~~~~~~~ 185 (363)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8876543
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.1e-18 Score=127.94 Aligned_cols=79 Identities=37% Similarity=0.690 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a 178 (363)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4478899999999999999999999999999999999999999999999999999999999994 477899999999875
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=1e-17 Score=132.69 Aligned_cols=86 Identities=30% Similarity=0.477 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999999999889999999999999999999999 368899999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98876543
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=6.7e-18 Score=125.50 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~ 180 (363)
+.+|||+|||.++++++|+++|++||+|.++.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3589999999999999999999999999999999999999999999999999999999994 68899999999999987
Q ss_pred CC
Q psy15045 181 TK 182 (363)
Q Consensus 181 ~~ 182 (363)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=130.18 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
..+.++|||+|||+++++++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 347889999999999999999999999999999999999889999999999999999999999 468899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=132.75 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccc----ccCCeee
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGT--LEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKH----KIGNRIC 173 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~----~~~g~~i 173 (363)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|.+||||||+|.+.++|.+|+. ++. .++|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 6799999999999999999999999999999994 443 5899999
Q ss_pred eEecccC
Q psy15045 174 DVRIPES 180 (363)
Q Consensus 174 ~v~~a~~ 180 (363)
.|.+|.+
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=130.73 Aligned_cols=85 Identities=28% Similarity=0.438 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4478999999999999999999999999999999999998899999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=126.82 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
+.++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999994 6889999999999988
Q ss_pred CC
Q psy15045 180 ST 181 (363)
Q Consensus 180 ~~ 181 (363)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=127.79 Aligned_cols=84 Identities=31% Similarity=0.476 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 367899999999999999999999999999999999999899999999999999999999994 788999999999999
Q ss_pred cCCCCC
Q psy15045 179 ESTKIG 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887544
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=128.23 Aligned_cols=84 Identities=21% Similarity=0.461 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~ 176 (363)
.....++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+|+ +++..++|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999997 9999999999999999999999 36889999999999
Q ss_pred cccCCCC
Q psy15045 177 IPESTKI 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987643
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=127.65 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
.+.+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999994 7889999999999
Q ss_pred cccC
Q psy15045 177 IPES 180 (363)
Q Consensus 177 ~a~~ 180 (363)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=131.38 Aligned_cols=86 Identities=22% Similarity=0.399 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hc------ccccCC
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LK------KHKIGN 170 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~------~~~~~g 170 (363)
.+...++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|| ++ +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456889999999999999999999999999999999999999999999999999999999999 45 789999
Q ss_pred eeeeEecccCCCCC
Q psy15045 171 RICDVRIPESTKIG 184 (363)
Q Consensus 171 ~~i~v~~a~~~~~~ 184 (363)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999887544
No 40
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.5e-18 Score=130.58 Aligned_cols=87 Identities=26% Similarity=0.500 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEec
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRI 177 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~ 177 (363)
.+...++|||+|||+++++++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|.+||. +++.++|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999995 68889999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98875443
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9e-18 Score=130.90 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999994 68899999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=130.82 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999994 68899999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98775443
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=130.56 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
.+...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578899999999999999999999999999999999998899999999999999999999995 6889999999999
Q ss_pred cccCCCCC
Q psy15045 177 IPESTKIG 184 (363)
Q Consensus 177 ~a~~~~~~ 184 (363)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887543
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.7e-17 Score=131.29 Aligned_cols=85 Identities=26% Similarity=0.351 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4578899999999999999999999999999999999998899999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877543
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.4e-18 Score=130.13 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFG--TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|+ +++..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999 57889999999999998
Q ss_pred CCCC
Q psy15045 180 STKI 183 (363)
Q Consensus 180 ~~~~ 183 (363)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=8e-18 Score=125.66 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999 4789999999999987
Q ss_pred c
Q psy15045 179 E 179 (363)
Q Consensus 179 ~ 179 (363)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=2.4e-18 Score=136.31 Aligned_cols=102 Identities=19% Similarity=0.296 Sum_probs=91.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 36789999999999999999999999999999999875 455899999999999999999 4688999999999999
Q ss_pred cCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCC
Q psy15045 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216 (363)
Q Consensus 179 ~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~ 216 (363)
.+.... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 876432 577888899999999999985
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=128.27 Aligned_cols=85 Identities=26% Similarity=0.443 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeE
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN---TGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v 175 (363)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|.+|+. ++..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3678999999999999999999999999999999999876 66999999999999999999995 688999999999
Q ss_pred ecccCCCCCC
Q psy15045 176 RIPESTKIGT 185 (363)
Q Consensus 176 ~~a~~~~~~~ 185 (363)
.++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998875443
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=129.29 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
..+.++|||+|||+++++++|+++|++||+|..|+|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346889999999999999999999999999999999999889999999999999999999999 468899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9877543
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=130.52 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999999889999999999999999999999 478899999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876544
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=131.06 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||+++|+++|+++|++||+|.+|.|++++. +.++|||||+|.+.++|.+||. +++.++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3578999999999999999999999999999999999976 9999999999999999999994 5889999999999865
Q ss_pred C
Q psy15045 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.8e-17 Score=127.42 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
+...++|||+|||+++++++|+++|++|| |.+|+|++++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34678999999999999999999999997 999999999999999999999999999999999 4688999999999999
Q ss_pred cCCCCCC
Q psy15045 179 ESTKIGT 185 (363)
Q Consensus 179 ~~~~~~~ 185 (363)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8875443
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=128.87 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCceeEEEEEeCCHHHHHHHH--h-cccccCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD-KNTGRSKGFGFIRFSSHESALKAM--L-KKHKIGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~al--~-~~~~~~g~~i~v 175 (363)
....++|||+|||.++++++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|.+|+ + ++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446789999999999999999999999999999999998 789999999999999999999999 4 688999999999
Q ss_pred ecccCCCCC
Q psy15045 176 RIPESTKIG 184 (363)
Q Consensus 176 ~~a~~~~~~ 184 (363)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999887544
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=128.35 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFA-NVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
...++|||+|||.++++++|+++|++||.|..+ +|++++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 999998899999999999999999999995 68889999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887543
No 55
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=130.65 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=79.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~~ 181 (363)
++|||+|||+++++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|.+|+. ++..++|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 68999999999999999994 688999999999999876
Q ss_pred CCCCC-------CCCcceEEEcCCC
Q psy15045 182 KIGTE-------EPVASKVFVGSLT 199 (363)
Q Consensus 182 ~~~~~-------~~~~~~l~V~nlp 199 (363)
..... .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 53211 1126789999997
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.5e-17 Score=129.66 Aligned_cols=86 Identities=35% Similarity=0.486 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccccc---CCeeee
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKI---GNRICD 174 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~---~g~~i~ 174 (363)
+...++|||+|||.++++++|+++|++||+|.+|+|+.++.++.++|||||+|.+.++|.+|+ +++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 446889999999999999999999999999999999999989999999999999999999999 456666 889999
Q ss_pred EecccCCCCCC
Q psy15045 175 VRIPESTKIGT 185 (363)
Q Consensus 175 v~~a~~~~~~~ 185 (363)
|.++.++....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998876543
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=127.15 Aligned_cols=82 Identities=23% Similarity=0.373 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccc
Q psy15045 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF--------ANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHK 167 (363)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~ 167 (363)
..+...++|||+|||.++++++|+++|++||.|.. ++|+.++.++.++|||||+|.+.++|.+|+ +++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34557899999999999999999999999999999 999999999999999999999999999999 47889
Q ss_pred cCCeeeeEeccc
Q psy15045 168 IGNRICDVRIPE 179 (363)
Q Consensus 168 ~~g~~i~v~~a~ 179 (363)
+.|+.|+|++|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 58
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=128.75 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--c--ccccCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--K--KHKIGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~--~~~~~g~~i~v 175 (363)
+.+.++|||+|||+++++++|+++|++||+|.+|+|+++ ||||||+|.+.++|.+|+. + +..+.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 447889999999999999999999999999999999876 7999999999999999995 3 36799999999
Q ss_pred ecccCCCCCC
Q psy15045 176 RIPESTKIGT 185 (363)
Q Consensus 176 ~~a~~~~~~~ 185 (363)
.++..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998875443
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.3e-17 Score=134.80 Aligned_cols=86 Identities=26% Similarity=0.448 Sum_probs=79.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeee
Q psy15045 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICD 174 (363)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~ 174 (363)
...+.+.++|||+|||+++++++|+++|++||+|..|+|++++.++.++|||||+|.+.++|.+||. ++..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999994 68899999999
Q ss_pred EecccCCC
Q psy15045 175 VRIPESTK 182 (363)
Q Consensus 175 v~~a~~~~ 182 (363)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=127.07 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCee----e
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLE-FANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRI----C 173 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~----i 173 (363)
...++|||+|||+++++++|+++|++||+|. +|+|++++.++.++|||||+|.+.++|++|+. ++..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4688999999999999999999999999999 99999999999999999999999999999994 688899999 9
Q ss_pred eEecccCCC
Q psy15045 174 DVRIPESTK 182 (363)
Q Consensus 174 ~v~~a~~~~ 182 (363)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988764
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=129.50 Aligned_cols=82 Identities=34% Similarity=0.530 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999 478899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9876
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.5e-17 Score=127.26 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccC
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~ 180 (363)
+++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999999889999999999999999999999 468899999999999987
Q ss_pred CC
Q psy15045 181 TK 182 (363)
Q Consensus 181 ~~ 182 (363)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=130.53 Aligned_cols=85 Identities=32% Similarity=0.527 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a 178 (363)
....++|||+|||+++++++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|.+||.. ...++|+.|.|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 44789999999999999999999999999999999999998999999999999999999999943 23899999999999
Q ss_pred cCCCCC
Q psy15045 179 ESTKIG 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
......
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 776433
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=127.08 Aligned_cols=84 Identities=32% Similarity=0.451 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.|.+|.|+.+ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 447889999999999999999999999999999999998 89999999999999999999994 78899999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876543
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=4.5e-17 Score=126.69 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC---eeeeE
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN---RICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g---~~i~v 175 (363)
...++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+|+. ++..+.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999999999997 89999999999999999999994 6778887 99999
Q ss_pred ecccCCCCC
Q psy15045 176 RIPESTKIG 184 (363)
Q Consensus 176 ~~a~~~~~~ 184 (363)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887543
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=130.74 Aligned_cols=84 Identities=27% Similarity=0.545 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a 178 (363)
+...++|||+|||.++++++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+.. ++.++|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 45688999999999999999999999999999999999998999999999999999999999953 68899999999999
Q ss_pred cCCCC
Q psy15045 179 ESTKI 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=126.35 Aligned_cols=80 Identities=26% Similarity=0.479 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346789999999999999999999999999999999999989999999999999999999999 468899999999998
Q ss_pred cc
Q psy15045 178 PE 179 (363)
Q Consensus 178 a~ 179 (363)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=131.49 Aligned_cols=84 Identities=31% Similarity=0.511 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++.++|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 356899999999999999999999999999999999999999999999999999999999995 5788999999999998
Q ss_pred CCCCC
Q psy15045 180 STKIG 184 (363)
Q Consensus 180 ~~~~~ 184 (363)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87543
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.9e-17 Score=130.03 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999994 78899999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.3e-17 Score=123.42 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
..++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4579999999999999999999999999999999999889999999999999999999999 458899999999999876
Q ss_pred C
Q psy15045 181 T 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=126.75 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccc-cCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQ-FGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHK-IGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~-~~g~~i~v 175 (363)
+...++|||+|||+++++++|+++|++ ||.|.+|.|+.++ ++.++|||||+|.+.++|.+|+. ++.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346789999999999999999999999 9999999999997 99999999999999999999995 5777 99999999
Q ss_pred ecccCCCC
Q psy15045 176 RIPESTKI 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977654
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=127.25 Aligned_cols=83 Identities=22% Similarity=0.463 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC-CCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT-GRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+++++++|+++|++|| |.+|.|+.++.+ +.++|||||+|.+.++|.+|| +++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3678999999999999999999999999 999999999887 999999999999999999999 4588899999999999
Q ss_pred cCCCCC
Q psy15045 179 ESTKIG 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887544
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=9.7e-18 Score=122.19 Aligned_cols=74 Identities=35% Similarity=0.619 Sum_probs=70.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
+|||+|||+++++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|++|+ ++++.++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999999999889999999999999999999999 5688999999999875
No 74
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=6e-18 Score=130.62 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCC-ee
Q psy15045 102 QNTDLVVLGIPW------TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGN-RI 172 (363)
Q Consensus 102 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g-~~ 172 (363)
..++|||+|||. ++++++|+++|++||.|.+|+|++++.||.++|||||+|.+.++|.+|+ +++..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 9999999999999999999999999999999999999999999999999 57899999 99
Q ss_pred eeEecccCC
Q psy15045 173 CDVRIPEST 181 (363)
Q Consensus 173 i~v~~a~~~ 181 (363)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 75
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=124.68 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||+|.+|+|+.++. +.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34678999999999999999999999999999999999974 9999999999999999999994 78899999999999
Q ss_pred ccC
Q psy15045 178 PES 180 (363)
Q Consensus 178 a~~ 180 (363)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=135.26 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccc----ccCCe
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF--ANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKH----KIGNR 171 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~----~~~g~ 171 (363)
....++|||+|||+++++++|+++|++||.|.. |+|++|+.+|.++|||||+|.+. +|.+|+ +++. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999977 99999999999999999999999 999999 4677 89999
Q ss_pred eeeEecccCCCCC
Q psy15045 172 ICDVRIPESTKIG 184 (363)
Q Consensus 172 ~i~v~~a~~~~~~ 184 (363)
.|.|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999877543
No 77
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=127.80 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=68.2
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.++|||+|||+++|+++|+++|++||.|.+|.++++ ++|||||+|.+.++|++|++. +..|+|++|+|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 478999999999999999999999999999999865 578999999999999999986 7899999999999986
No 78
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=124.24 Aligned_cols=86 Identities=27% Similarity=0.437 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
.+...++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999999999999999853 389999999999999999994 6889999999999
Q ss_pred cccCCCCCCC
Q psy15045 177 IPESTKIGTE 186 (363)
Q Consensus 177 ~a~~~~~~~~ 186 (363)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9988765443
No 79
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=126.98 Aligned_cols=78 Identities=29% Similarity=0.392 Sum_probs=70.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCC-CeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc---CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYG-AVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ---HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G-~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~---~~~~~g~~l~V~~a 260 (363)
+++|||+|||+++|+++|+++|++|| .|.+|+|+++ ++|||||+|.+.++|++|++. +..++|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999865 689999999999999999986 34799999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++.+..
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.7e-18 Score=152.53 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=69.5
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCC--CeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYG--AVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G--~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.++|||+|||+.+|+++|+++|++|| .|+.|+|+++ ++|||||+|.+.++|++||+. ++.|+|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 47899999999999999999999999 9999999865 589999999999999999996 68999999999999
Q ss_pred cCCCc
Q psy15045 261 TPKKK 265 (363)
Q Consensus 261 ~~~~~ 265 (363)
.+...
T Consensus 148 ~~~~~ 152 (229)
T 3q2s_C 148 NKQFL 152 (229)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 87653
No 81
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=1.6e-17 Score=160.94 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.+ ++|||||+|.+.++|.+||.. +..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999865 589999999999999999976 78999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 986553
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=128.63 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccC
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLE--------FANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIG 169 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~ 169 (363)
....++|||+|||.++++++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+||. ++..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34688999999999999999999999999998 69999998899999999999999999999994 788999
Q ss_pred CeeeeEecccCCCCC
Q psy15045 170 NRICDVRIPESTKIG 184 (363)
Q Consensus 170 g~~i~v~~a~~~~~~ 184 (363)
|+.|.|.++.++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887544
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=123.98 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEE
Q psy15045 184 GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVME 259 (363)
Q Consensus 184 ~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~ 259 (363)
....+++++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|++.++|.+|+.. +..++|++|.|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 344456789999999999999999999999999999999877 99999999999999999984 4689999999999
Q ss_pred ccCCCccc
Q psy15045 260 ATPKKKMN 267 (363)
Q Consensus 260 a~~~~~~~ 267 (363)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2cq1_A 88 SNHKELKT 95 (101)
T ss_dssp CSCSSCCC
T ss_pred cCcccCcC
Confidence 98876543
No 84
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=131.36 Aligned_cols=86 Identities=30% Similarity=0.486 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
.+...++|||+|||.++++++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999994 6889999999999
Q ss_pred cccCCCCC
Q psy15045 177 IPESTKIG 184 (363)
Q Consensus 177 ~a~~~~~~ 184 (363)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 85
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=129.17 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999999899999999999999999999994 688999999999999
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=124.22 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+++++++|+++|++||.|.++.|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 367899999999999999999999999999999999999899999999999999999999994 688899999988876
Q ss_pred c
Q psy15045 179 E 179 (363)
Q Consensus 179 ~ 179 (363)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=8.7e-17 Score=121.89 Aligned_cols=82 Identities=32% Similarity=0.517 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999984 78999999999999999999994 68899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987653
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=123.96 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|+ +++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999853 36899999999999999999 468899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9887543
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=123.01 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC-ceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR-SKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
..++|||+|||.++++++|+++|++||.|.++.|+.++.++. ++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999987666 89999999999999999994 789999999999998
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=127.39 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~~~ 263 (363)
+..++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|++.++|.+|++. +..|+|++|.|.+++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34689999999999999999999999999999999987 99999999999999999984 36899999999999887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.5e-17 Score=129.49 Aligned_cols=80 Identities=33% Similarity=0.522 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|.+|+. ++..++|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999998899999999999999999999994 68899999999998
Q ss_pred cc
Q psy15045 178 PE 179 (363)
Q Consensus 178 a~ 179 (363)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 92
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=128.46 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+. ++..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 99999999999999999999994 688999999999999
Q ss_pred cCCCC
Q psy15045 179 ESTKI 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=7.5e-17 Score=125.87 Aligned_cols=79 Identities=30% Similarity=0.484 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+.+++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3468899999999999999999999999999999999997 99999999999999999999994 78899999999998
Q ss_pred cc
Q psy15045 178 PE 179 (363)
Q Consensus 178 a~ 179 (363)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=123.25 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--C--CeeCCeEEEEEEccC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--H--VNIKDKKVVVMEATP 262 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~--~~~~g~~l~V~~a~~ 262 (363)
.+++++|||+|||+++|+++|+++|++||.|.++.++++ ||||||+|++.++|.+|+.. + ..|+|++|.|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 345789999999999999999999999999999999865 89999999999999999986 2 358999999999987
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
++
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3.9e-17 Score=131.44 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+ +++..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 446789999999999999999999999999999999999889999999999999999999999 478999999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 96
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=136.42 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFG--TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
..++|||+|||+++++++|+++|++|| .|.+|+|+.|+.+|.++|||||+|.+.++|.+||. ++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999994 68899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=4.5e-17 Score=136.08 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+.. ++.|+|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999765 568999999999999999995 78999999999999
Q ss_pred cCCCc
Q psy15045 261 TPKKK 265 (363)
Q Consensus 261 ~~~~~ 265 (363)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=125.42 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467899999999999999999999999999999999998999999999999999999999994 57899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=8.2e-17 Score=123.14 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccc--ccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKH--KIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~--~~~g~~i~v~ 176 (363)
.++++|||+|||.++++++|+++|++||.|.+|++++. ||||||+|.+.++|.+|+. ++. .+.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 46789999999999999999999999999999999864 7999999999999999994 344 4889999999
Q ss_pred cccCCC
Q psy15045 177 IPESTK 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998763
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.5e-17 Score=121.18 Aligned_cols=74 Identities=30% Similarity=0.615 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEecc
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIP 178 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a 178 (363)
+|||+|||+++++++|+++|++||+|.++.++.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999899999999999999999999994 578899999999875
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=124.17 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCc-CCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEccC
Q psy15045 188 PVASKVFVGSLTP-DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEATP 262 (363)
Q Consensus 188 ~~~~~l~V~nlp~-~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~~ 262 (363)
.++++|||+|||+ .+++++|+++|++||.|.+|.|+++ ++||||+|++.++|.+|++. ...|+|++|.|.+|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 4568999999999 9999999999999999999999976 89999999999999999985 3469999999999987
Q ss_pred CCccc
Q psy15045 263 KKKMN 267 (363)
Q Consensus 263 ~~~~~ 267 (363)
....+
T Consensus 92 ~~~~~ 96 (102)
T 1x4d_A 92 YKRIK 96 (102)
T ss_dssp CTTSS
T ss_pred CCCCC
Confidence 65443
No 102
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=6.9e-17 Score=121.84 Aligned_cols=79 Identities=52% Similarity=0.775 Sum_probs=67.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEccCCCcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~ 266 (363)
+...+|||+|||+++|+++|+++|++||.|.+|.|+++++|||||+|++.++|+++....+.++|+.|.|.++.++...
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~~ 87 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNK 87 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCcC
Confidence 4468999999999999999999999999999999999999999999999999997766666788999999999987643
No 103
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=124.30 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+. +++.++|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 357899999999999999999999999999999999996 69999999999999999999994 788999999999998
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7554
No 104
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=126.23 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
+...++|||+|||+++++++|+++|++||.+ +|+|+.++ +++++|||||+|.+.++|++|| ++++.++++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4467899999999999999999999999955 99999997 8999999999999999999999 4688899999999988
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 105
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-16 Score=122.63 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~ 176 (363)
.....++|||+|||.++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+ +++..++|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999965 4568999999999999999999 46889999999999
Q ss_pred cccCCCCC
Q psy15045 177 IPESTKIG 184 (363)
Q Consensus 177 ~a~~~~~~ 184 (363)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887543
No 106
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=124.34 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF-ANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 346789999999999999999999999999987 888888 799999999999999999999994 57889999999998
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.5e-17 Score=125.71 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEE-ecCCCCCceeEEEEEeCCHHHHHHHHh---c-ccccCCeeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGT-LEFANVK-VDKNTGRSKGFGFIRFSSHESALKAML---K-KHKIGNRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~g~~~G~afV~f~~~~~a~~al~---~-~~~~~g~~i~ 174 (363)
.+.++|||+|||+++++++|+++|++||. |.+|.++ .++.++.++|||||+|.+.++|.+|+. + +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 36789999999999999999999999998 9999998 788889999999999999999999994 3 4789999999
Q ss_pred EecccCCCCC
Q psy15045 175 VRIPESTKIG 184 (363)
Q Consensus 175 v~~a~~~~~~ 184 (363)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887543
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=120.92 Aligned_cols=75 Identities=31% Similarity=0.627 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecc
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIP 178 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a 178 (363)
++|||+|||+++++++|+++|++||+|.++.++.++.++.++|||||+|.+.++|.+|+.. ...++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999988999999999999999999999943 37899999999986
No 109
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=128.38 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| ++++.|+|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 35689999999999999999999999999999999999989999999999999999999999 46889999999999987
Q ss_pred CCC
Q psy15045 180 STK 182 (363)
Q Consensus 180 ~~~ 182 (363)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=3.3e-17 Score=125.01 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999999999998999999999999999999999994 788999999999987
Q ss_pred cC
Q psy15045 179 ES 180 (363)
Q Consensus 179 ~~ 180 (363)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 111
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=120.22 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
+...++|||+|||+++++++|+++|++| .|.+|+|+++ .+|.++|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3467899999999999999999999999 9999999999 79999999999999999999999 5678899999999998
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=129.90 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTL-EFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.| ..|+|+.++ ++.++|||||+|.+.++|.+|| .++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999997 9999999999999999999999 467889999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87653
No 113
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=1.9e-16 Score=132.33 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+||. +++.|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367899999999999999999999999999999999999999999999999999999999994 688999999999999
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=122.62 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh----cccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML----KKHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~----~~~~~~g~~i~v~ 176 (363)
.++++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|+. ++..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 36789999999999999999999999999999998865 7999999999999999995 2567999999999
Q ss_pred cccCCCCCC
Q psy15045 177 IPESTKIGT 185 (363)
Q Consensus 177 ~a~~~~~~~ 185 (363)
++..+....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998875443
No 115
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=3e-17 Score=141.88 Aligned_cols=84 Identities=30% Similarity=0.603 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 456899999999999999999999999999999999998899999999999999999999994 5789999999999998
Q ss_pred CCCCC
Q psy15045 180 STKIG 184 (363)
Q Consensus 180 ~~~~~ 184 (363)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 87543
No 116
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.9e-16 Score=127.08 Aligned_cols=84 Identities=32% Similarity=0.449 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||+|.+|+|+.++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4577899999999999999999999999999999999997 99999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 117
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=127.01 Aligned_cols=82 Identities=24% Similarity=0.504 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK-NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++|| |.+|+|+.++ .+|.++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 44789999999999999999999999999 9999999998 58999999999999999999999 458899999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 118
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=7.1e-18 Score=141.98 Aligned_cols=150 Identities=19% Similarity=0.277 Sum_probs=105.3
Q ss_pred CeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCCCcccc-----------cCCCCC
Q psy15045 28 GTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGNSSATQ-----------SKRSYP 95 (363)
Q Consensus 28 ~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 95 (363)
.++++++|........-. .|...+....++++.+..+..+.|+++..|.... .+..+.. .....+
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~---~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS---SVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH---HHHHHHHSCCEETTEECCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH---HHHHHHhcccccCCeEcccccccc
Confidence 356666664444321111 1222455666777777777778888844443221 1111111 111111
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeee
Q psy15045 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICD 174 (363)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~ 174 (363)
. ......++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.
T Consensus 81 ~-~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 159 (167)
T 2cjk_A 81 R-DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIE 159 (167)
T ss_dssp H-HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEE
T ss_pred h-hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEE
Confidence 0 012246799999999999999999999999999999999998899999999999999999999995 57889999999
Q ss_pred EecccCC
Q psy15045 175 VRIPEST 181 (363)
Q Consensus 175 v~~a~~~ 181 (363)
|.++.++
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 9999875
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=121.62 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeE
Q psy15045 102 QNTDLVVLGIPWTFTDNDLK----EYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDV 175 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v 175 (363)
..++|||+|||+++++++|+ ++|++||+|.+|+|+.++.+ +|||||+|.+.++|.+|+ +++..++|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56899999999999999999 99999999999999998655 899999999999999999 4688999999999
Q ss_pred ecccCCC
Q psy15045 176 RIPESTK 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++.+..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997764
No 120
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=7.1e-17 Score=127.85 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=70.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
..+|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++. +..|+|++|.|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 468999999999999999999999999999999865 579999999999999999986 789999999999998876
Q ss_pred ccc
Q psy15045 265 KMN 267 (363)
Q Consensus 265 ~~~ 267 (363)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.7e-17 Score=123.75 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cc--cccCCeeeeE
Q psy15045 101 VQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KK--HKIGNRICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~--~~~~g~~i~v 175 (363)
.+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+. ++ ..+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999876 5899999999999999995 43 4599999999
Q ss_pred ecccCCC
Q psy15045 176 RIPESTK 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 122
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.8e-16 Score=132.63 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9877543
No 123
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=121.74 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--c--ccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--K--KHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~--~~~~~g~~i~v~ 176 (363)
.+.++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|+. + ...+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998864 7999999999999999995 3 345999999999
Q ss_pred cccCCCC
Q psy15045 177 IPESTKI 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987653
No 124
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=2.2e-16 Score=126.62 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
..++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+ ++++.++|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999999889999999999999999999999 468889999999999886
Q ss_pred CCC
Q psy15045 181 TKI 183 (363)
Q Consensus 181 ~~~ 183 (363)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 125
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=5.3e-17 Score=125.64 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccC
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~ 180 (363)
...++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+.+++.++|+.|.|.++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 357899999999999999999999999999999999997 9999999999999999999999988899999999999876
Q ss_pred CC
Q psy15045 181 TK 182 (363)
Q Consensus 181 ~~ 182 (363)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=121.20 Aligned_cols=80 Identities=26% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEcc
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEAT 261 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~ 261 (363)
..+++++|||+|||+.+++++|+++|++||.|..|.++++ ||||||+|++.++|.+|+.. ...|+|++|.|.|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3455789999999999999999999999999999999876 99999999999999999985 346999999999998
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wex_A 90 SKRIT 94 (104)
T ss_dssp SSSCC
T ss_pred Ccccc
Confidence 76543
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=125.87 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~~~ 263 (363)
+++++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++. +..|+|++|.|.+++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 45689999999999999999999999999999999987 89999999999999999985 36899999999999887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
....
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6554
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=2.6e-17 Score=144.70 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=110.2
Q ss_pred ccccCCCCeeeeecccccCCCceee-eeeeeceeeeeeeccCcCCCCCCCCCCcceeeccCCCCC----------Ccccc
Q psy15045 21 EIPSEDDGTILLSTLQAQYPSAIGL-KYKVESRYRAVKLADGHLYAPLDGWQDRVYYCTFDASGN----------SSATQ 89 (363)
Q Consensus 21 ~~~~~~~~~~~l~~l~~~~~~~~~l-~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~ 89 (363)
..|+....|+++++|........-. .|...+....++++.+..+..+.|+++..|....++..+ .+.+.
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 3455566689999997666633222 233366777888888888888888885444332211111 11111
Q ss_pred cCCCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccc
Q psy15045 90 SKRSYPDN-SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKH 166 (363)
Q Consensus 90 ~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~ 166 (363)
...+.... ......++|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+|| +++.
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 11111110 012246789999999999999999999999999999999984 557999999999999999999 4789
Q ss_pred ccCCeeeeEecccCCC
Q psy15045 167 KIGNRICDVRIPESTK 182 (363)
Q Consensus 167 ~~~g~~i~v~~a~~~~ 182 (363)
.|+|+.|.|.++.++.
T Consensus 167 ~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EETTEECEEEECCCHH
T ss_pred EECCEEEEEEEcCCCc
Confidence 9999999999998754
No 129
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-16 Score=122.33 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccccc--------C
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKI--------G 169 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~--------~ 169 (363)
....++|||+|||+++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+ +++..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999997 9999999999999999999999 467777 5
Q ss_pred CeeeeEecccCC
Q psy15045 170 NRICDVRIPEST 181 (363)
Q Consensus 170 g~~i~v~~a~~~ 181 (363)
+++|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778899988754
No 130
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=124.60 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--c--ccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--K--KHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~--~~~~~g~~i~v~ 176 (363)
.++++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+. + +..+.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 35789999999999999999999999999999999976 7999999999999999995 3 357999999999
Q ss_pred cccCCCCCC
Q psy15045 177 IPESTKIGT 185 (363)
Q Consensus 177 ~a~~~~~~~ 185 (363)
++..+....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998876443
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.9e-17 Score=128.73 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIP 178 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a 178 (363)
....++|||+|||+++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|| +++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 346789999999999999999999999999998777777689999999999999999999999 5788999999999998
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.7e-17 Score=124.25 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecccCC
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPEST 181 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~~~ 181 (363)
++|||+|||.++++++|+++|++||+|.+|.+++++.++.++|||||+|.+.+ |.+|+. ++..++|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 999994 688899999999999876
Q ss_pred CC
Q psy15045 182 KI 183 (363)
Q Consensus 182 ~~ 183 (363)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 133
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=125.01 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC---CceeEEEEEeCCHHHHHHHHh--cccccCCee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLK---EYFEQFGTLEFANVKVDKNTG---RSKGFGFIRFSSHESALKAML--KKHKIGNRI 172 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g---~~~G~afV~f~~~~~a~~al~--~~~~~~g~~ 172 (363)
...++|||+|||+++++++|+ ++|++||+|.+|.|++++.++ .++|||||+|.+.++|.+||. ++..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999987644 566999999999999999994 788999999
Q ss_pred eeEecccCCC
Q psy15045 173 CDVRIPESTK 182 (363)
Q Consensus 173 i~v~~a~~~~ 182 (363)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998875
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=2.9e-16 Score=132.47 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|| +++..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999 468899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987643
No 135
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=7.1e-17 Score=131.57 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.+....
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=128.69 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||+|.+++|+.++.++.++|||||+|.+.++|.+|+. ++..++|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4478999999999999999999999999999999999999999999999999999999999994 68889999999988
Q ss_pred c
Q psy15045 178 P 178 (363)
Q Consensus 178 a 178 (363)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 137
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=1.2e-16 Score=130.19 Aligned_cols=117 Identities=22% Similarity=0.201 Sum_probs=75.1
Q ss_pred EEEEEeCCHHHHHHHHhc--ccccCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecC
Q psy15045 147 FGFIRFSSHESALKAMLK--KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224 (363)
Q Consensus 147 ~afV~f~~~~~a~~al~~--~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~ 224 (363)
++|++|++...+..|+.. +....|+. .+.+..+ .......++|||+|||+.+++++|+++|++||.|..|.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCCS---CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 667777777777777743 22233322 2222222 23334468999999999999999999999999999999986
Q ss_pred C-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 225 P-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 225 ~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
+ ++|||||+|.+.++|++|+.. +..|+|++|.|.++++.....
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 5 688999999999999999986 779999999999998866543
No 138
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=7.5e-16 Score=119.37 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
...++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|++|+.. ++.|+|+.|.|.++.++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 345899999999999999999999999999999998 66999999999999999996 7799999999999998766
Q ss_pred cc
Q psy15045 266 MN 267 (363)
Q Consensus 266 ~~ 267 (363)
..
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 139
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.5e-16 Score=129.33 Aligned_cols=81 Identities=17% Similarity=0.360 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGT---LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v 175 (363)
+...++|||+|||+++|+++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|++|| +++..++|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 346789999999999999999999999999 89999999976 999999999999999999999 5788999999999
Q ss_pred ecccCC
Q psy15045 176 RIPEST 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 987543
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=126.33 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGT---LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~ 176 (363)
...++|||+|||+++++++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++|| ++++.|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 46789999999999999999999999999 89999999975 999999999999999999999 56889999999999
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87544
No 141
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.8e-16 Score=120.36 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=70.1
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCC-----eEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKD-----KKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g-----~~l~V~~a~ 261 (363)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ +||||+|.+.++|++|++. +..|+| +.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4689999999999999999999999999999999977 9999999999999999996 678999 999999999
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
++...
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.9e-16 Score=119.90 Aligned_cols=81 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 261 (363)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+..++.|+|+.|.|.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 344689999999999999999999999999999999865 478999999999999999999889999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2cqg_A 92 SKQSQD 97 (103)
T ss_dssp TTCCCC
T ss_pred CCCcCC
Confidence 876654
No 143
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=118.84 Aligned_cols=79 Identities=53% Similarity=0.812 Sum_probs=72.1
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEccCCCccc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~~ 267 (363)
..++|||+|||+.+++++|+++|++||.|..|.++++++|||||+|.+.++|++|+...+.++|++|.|.++.++....
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCCC
Confidence 3589999999999999999999999999999999988999999999999999988777778899999999998876543
No 144
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.3e-16 Score=116.58 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|.+|+ +++..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999875 4899999999999999999 57889999999999883
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=124.00 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCcC-CCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~-~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V~~a~ 261 (363)
..++++|||+|||++ +++++|+++|++||.|.+|.|.+. +|||||+|++.++|.+|++. ...|+|++|.|.++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 445789999999998 999999999999999999999865 99999999999999999985 356999999999998
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
.+....
T Consensus 101 ~~~~~~ 106 (112)
T 1x4f_A 101 KYKKLV 106 (112)
T ss_dssp SCSSSS
T ss_pred cccccc
Confidence 776554
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3.4e-16 Score=122.85 Aligned_cols=95 Identities=19% Similarity=0.320 Sum_probs=82.1
Q ss_pred cCCeeeeEecccCCCCCCCCCCcceEEEcCCCcC-CCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 168 IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 168 ~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~-~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
..|..|.+..+............++|||+|||+. +++++|+++|++||.|..|.+ +++||||+|.+.++|++|+..
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 3567778877776655555556789999999999 999999999999999999999 489999999999999999976
Q ss_pred --CCeeCCeEEEEEEccCCCc
Q psy15045 247 --HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 247 --~~~~~g~~l~V~~a~~~~~ 265 (363)
+..|+|+.|.|.++.+...
T Consensus 82 l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HTTCEETTEECCEEESCCCCS
T ss_pred cCCCEECCeEEEEEECCCCCC
Confidence 7899999999999986543
No 147
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=123.55 Aligned_cols=80 Identities=30% Similarity=0.472 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||+|.+|+|+.++ +.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4468899999999999999999999999999999999884 4589999999999999999994 68899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 148
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.7e-16 Score=118.01 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+.. +..|+|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34689999999999999999999999999999999865 579999999999999999976 77999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9976653
No 149
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-15 Score=119.17 Aligned_cols=81 Identities=26% Similarity=0.352 Sum_probs=72.3
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVME 259 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~ 259 (363)
.....++|||+|||+.+++++|+++|++||.|..|.|+++ +++||||+|.+.++|++|+.. +..|+|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 3445689999999999999999999999999999999875 679999999999999999998 4489999999999
Q ss_pred ccCCCcc
Q psy15045 260 ATPKKKM 266 (363)
Q Consensus 260 a~~~~~~ 266 (363)
+.+....
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9876443
No 150
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=124.17 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
++.++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++|||||+|++.++|++|++. +..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999865 579999999999999999986 78999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.....+.
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 8765543
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-16 Score=116.09 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|++||+|.+|.++ +|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999987 579999999999999999 468889999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 152
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-15 Score=117.95 Aligned_cols=82 Identities=26% Similarity=0.390 Sum_probs=74.1
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+.. +..|+|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3345689999999999999999999999999999999866 589999999999999999986 78999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9876654
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=5.8e-16 Score=135.80 Aligned_cols=83 Identities=25% Similarity=0.468 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||.++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 56899999999999999999999999999999999998899999999999999999999994 6889999999999998
Q ss_pred CCCCC
Q psy15045 180 STKIG 184 (363)
Q Consensus 180 ~~~~~ 184 (363)
++...
T Consensus 204 ~~~~~ 208 (216)
T 2qfj_A 204 TPPMP 208 (216)
T ss_dssp SCSST
T ss_pred CCCCC
Confidence 87543
No 154
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=122.07 Aligned_cols=78 Identities=29% Similarity=0.401 Sum_probs=71.2
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
..++|||+|||+++++++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|++. +..|+|+.|.|.++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999875 579999999999999999986 7899999999999988
Q ss_pred CCcc
Q psy15045 263 KKKM 266 (363)
Q Consensus 263 ~~~~ 266 (363)
+...
T Consensus 86 ~~~~ 89 (116)
T 2fy1_A 86 PSFQ 89 (116)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 6544
No 155
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=120.08 Aligned_cols=81 Identities=27% Similarity=0.456 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468999999999999999999999999977 56666 689999999999999999999994 68899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9887543
No 156
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=2.6e-16 Score=118.62 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEeccc
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~ 179 (363)
+....+|||+|||+++++++|+++|++||+|.+|+|+++ +||||||+|.+.++|.++......+.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 346889999999999999999999999999999999875 689999999999999965444556789999999998
Q ss_pred CCC
Q psy15045 180 STK 182 (363)
Q Consensus 180 ~~~ 182 (363)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 157
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=118.30 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
....++|||+|||+.+++++|+++|++||.|..|.|+++ +++||||+|.+.++|++|+.. +..|+|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 345689999999999999999999999999999999875 679999999999999999985 779999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 158
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-16 Score=118.36 Aligned_cols=80 Identities=31% Similarity=0.528 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||..+++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|++. ++.|+|++|.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 44689999999999999999999999999999999865 689999999999999999986 779999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++....
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 876554
No 159
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=114.74 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh---cccccCCeeeeEe
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML---KKHKIGNRICDVR 176 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~---~~~~~~g~~i~v~ 176 (363)
+...++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+. ++..++|+.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 446789999999999999999999999999999999875 7999999999999999994 6788999999999
Q ss_pred ccc
Q psy15045 177 IPE 179 (363)
Q Consensus 177 ~a~ 179 (363)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 160
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=121.78 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCe-e
Q psy15045 102 QNTDLVVLGIPWTF------TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNR-I 172 (363)
Q Consensus 102 ~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~-~ 172 (363)
..++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+|.++|||||+|.+.++|.+|+. ++..++|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 3689999999999999999999994 68899998 9
Q ss_pred eeEecccCC
Q psy15045 173 CDVRIPEST 181 (363)
Q Consensus 173 i~v~~a~~~ 181 (363)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=123.57 Aligned_cols=78 Identities=21% Similarity=0.465 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
...+|||+|||+++++++|+++|++| .|.+|.|+.++. |+++|||||+|.+.++|.+|| ++++.++|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 46799999999999999999999999 899999999964 999999999999999999999 468899999999988754
Q ss_pred C
Q psy15045 181 T 181 (363)
Q Consensus 181 ~ 181 (363)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=3.6e-16 Score=138.83 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFG--TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
..++|||+|||+++++++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+||. +++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999994 68899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-16 Score=126.23 Aligned_cols=79 Identities=29% Similarity=0.407 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||..+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999854 488999999999999999996 77999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887544
No 164
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=124.41 Aligned_cols=85 Identities=24% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 467899999999999999999999999998544333222378899999999999999999994 688999999999999
Q ss_pred cCCCCCC
Q psy15045 179 ESTKIGT 185 (363)
Q Consensus 179 ~~~~~~~ 185 (363)
.++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 8876543
No 165
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=2.1e-15 Score=119.14 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
.....++|||+|||+.+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|++|++. +..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445789999999999999999999999999999999865 478999999999999999985 789999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999876554
No 166
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=116.64 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCe-ee
Q psy15045 103 NTDLVVLGIPWTF------TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNR-IC 173 (363)
Q Consensus 103 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~-~i 173 (363)
+++|||+|||..+ ++++|+++|++||+|.+|.|+ +.+|.++|||||+|.+.++|.+|+. ++..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 3689999999999999999999994 68899998 88
Q ss_pred eE
Q psy15045 174 DV 175 (363)
Q Consensus 174 ~v 175 (363)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 167
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=5.8e-17 Score=125.16 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||+++++++|+++|++||.|.. .++.++.++.++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999888 67777778999999999999999999999 57888999999999998
Q ss_pred CCCC
Q psy15045 180 STKI 183 (363)
Q Consensus 180 ~~~~ 183 (363)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 168
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.6e-16 Score=118.69 Aligned_cols=82 Identities=30% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+|| ++++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44788999999999999999999999873 6788888889999999999999999999999 478899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9887543
No 169
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=119.17 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
....++|||+|||+.+++++|+++|++||.|..|.|..+ +++||||+|.+.++|++|++. +..|+|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 344689999999999999999999999999999999765 689999999999999999976 7899999999999887
Q ss_pred CCc
Q psy15045 263 KKK 265 (363)
Q Consensus 263 ~~~ 265 (363)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 170
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=119.11 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=66.2
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCC--eEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--C----CeeCCeEE
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--H----VNIKDKKV 255 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~--i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~----~~~~g~~l 255 (363)
.-.+|||+|||+.+|+++|+++|++||. |.+|++++| ++|||||+|.+.++|++|++. + +.|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 678999875 689999999999999999986 3 36999999
Q ss_pred EEEEccC
Q psy15045 256 VVMEATP 262 (363)
Q Consensus 256 ~V~~a~~ 262 (363)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=3.4e-16 Score=125.40 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEe
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLE--FANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVR 176 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~ 176 (363)
+...++|||+|||+++++++|+++|++| .|. +|+|+.++. |+++|||||+|.+.++|.+||. ++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3467899999999999999999999999 677 899999976 9999999999999999999994 5788999999998
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
.+..+
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 172
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=6.7e-16 Score=114.53 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=68.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
.+|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. +..++|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999855 479999999999999999996 78999999999999886
Q ss_pred C
Q psy15045 264 K 264 (363)
Q Consensus 264 ~ 264 (363)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=118.11 Aligned_cols=80 Identities=28% Similarity=0.463 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|++. +..|+|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 44689999999999999999999999999999999865 689999999999999999986 78999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 174
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9e-16 Score=118.86 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
.....++|||+|||+.+++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|+.. +..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3445689999999999999999999999999999999865 478999999999999999995 789999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998876543
No 175
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=116.61 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccC--CeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIG--NRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~--g~~i~v 175 (363)
+.+.++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|+. ++..++ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999998754 7899999999999999994 688899 999999
Q ss_pred ecccCCC
Q psy15045 176 RIPESTK 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998864
No 176
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.4e-16 Score=117.08 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=71.8
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEE-EecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDV-LIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i-~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
..++|||+|||+.+++++|+++|++||.|..+ .++++ ++|||||+|.+.++|++|+.. +..|+|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 88875 589999999999999999996 77999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.9e-16 Score=129.74 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ +++..++|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 346789999999999999999999999999999999999999999999999999999999999 468899999999999
Q ss_pred cc
Q psy15045 178 PE 179 (363)
Q Consensus 178 a~ 179 (363)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 178
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=123.87 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLK----EYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~ 174 (363)
.+.++|||+|||+.+++++|+ ++|++||+|.+|.+. .++.++|||||+|.+.++|..|+ +++..+.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999876 699999999998875 36789999999999999999999 468899999999
Q ss_pred EecccCCC
Q psy15045 175 VRIPESTK 182 (363)
Q Consensus 175 v~~a~~~~ 182 (363)
|.|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998764
No 179
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=123.56 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGT---LEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v 175 (363)
....++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|| +++..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 346789999999999999999999999998 89999999976 999999999999999999999 5678899999999
Q ss_pred ecccCC
Q psy15045 176 RIPEST 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 987654
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.3e-16 Score=122.85 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=69.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCC----HHH----HHHHHh----cccc
Q psy15045 104 TDLVVLGI----PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS----HES----ALKAML----KKHK 167 (363)
Q Consensus 104 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~----~~~----a~~al~----~~~~ 167 (363)
++|||+|| |+.+++++|+++|+.||+|.++.++.||.||.++|||||+|.+ +++ |.+|+. ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 778875 6889
Q ss_pred cCCeeeeEecccCC
Q psy15045 168 IGNRICDVRIPEST 181 (363)
Q Consensus 168 ~~g~~i~v~~a~~~ 181 (363)
|+|+.|+|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999975543
No 181
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=118.44 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
..+.++|||+|||+++++++|+++|++||+|..|+++++ +|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999865 799999999999999999 468889999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98764
No 182
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=118.18 Aligned_cols=82 Identities=28% Similarity=0.376 Sum_probs=73.4
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
.....++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+.. +..|+|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3345689999999999999999999999999999999875 578999999999999999996 779999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876543
No 183
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=116.46 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999997 677654 56899999999999999999 468899999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 184
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=130.37 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=67.6
Q ss_pred eEEEEEeCCHHHHHHHHhcccc-cCCeeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecC
Q psy15045 146 GFGFIRFSSHESALKAMLKKHK-IGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224 (363)
Q Consensus 146 G~afV~f~~~~~a~~al~~~~~-~~g~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~ 224 (363)
|+||.+|..++.+..++.+... ..+...--...... ........++|||+|||+++|+++|+++|++|| |+.|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~-~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSE-FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCcc-cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 6788888888777766643221 22222211111111 112223457999999999999999999999999 67999986
Q ss_pred C----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCCC
Q psy15045 225 P----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 225 ~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 264 (363)
+ ++|||||+|++.++|++|+.. +..|+|+.|.|..+.++.
T Consensus 80 d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred CCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 5 689999999999999999965 679999999999887654
No 185
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.4e-16 Score=120.00 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--c--ccccCCeeeeE
Q psy15045 101 VQNTDLVVLGIPWT-FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--K--KHKIGNRICDV 175 (363)
Q Consensus 101 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~--~~~~~g~~i~v 175 (363)
.++++|||+|||++ +++++|+++|++||+|.+|+|++. ||||||+|.+.++|.+|+. + ...+.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 36889999999998 999999999999999999999754 7999999999999999995 3 35699999999
Q ss_pred ecccCCCC
Q psy15045 176 RIPESTKI 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987643
No 186
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=117.38 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|.+|++. +..|+|++|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44689999999999999999999999999999999865 469999999999999999976 779999999999998
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8764
No 187
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=119.02 Aligned_cols=79 Identities=28% Similarity=0.453 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 34689999999999999999999999999999999865 589999999999999999998 789999999999999
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
++..+
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 188
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=118.62 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
....++|||+|||+.+++++|+++|++||.|..|.+..+ +++||||+|.+.++|.+|+.. +..|+|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 345689999999999999999999999999999999864 578999999999999999996 789999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877654
No 189
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=115.95 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=71.3
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..++|||+|||..+++++|+++|++||.|..|.+.++ ++|||||+|.+.++|++|+.. +..|+|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4589999999999999999999999999999999875 578999999999999999995 789999999999998
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86543
No 190
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=9.8e-16 Score=121.14 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..+..++|||+|||+.+++++|+++|++||.|..|.|+++ +++||||+|.+.++|++|++. +..|+|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999865 468999999999999999976 789999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998876554
No 191
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=118.54 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999876 799999999999999999 4688999999999999
Q ss_pred cCCCCC
Q psy15045 179 ESTKIG 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 887543
No 192
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=8.4e-16 Score=113.56 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=67.9
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++. +..+.|++|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 357899999999999999999999999999999986 599999999999999999998 7799999999999953
No 193
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=118.56 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--------CCeeCCe
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--------HVNIKDK 253 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--------~~~~~g~ 253 (363)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+.. ++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 344689999999999999999999999999999999865 689999999999999999985 5689999
Q ss_pred EEEEEEccCCCccc
Q psy15045 254 KVVVMEATPKKKMN 267 (363)
Q Consensus 254 ~l~V~~a~~~~~~~ 267 (363)
.|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876654
No 194
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=116.14 Aligned_cols=77 Identities=19% Similarity=0.365 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeC--CeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIK--DKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~--g~~l~V~~a~~~ 263 (363)
++.++|||+|||+.+++++|+++|++||.|..|.+.++ ++||||+|.+.++|++|++. +..|+ |++|.|.++.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34589999999999999999999999999999999877 89999999999999999996 77899 999999999886
Q ss_pred Cc
Q psy15045 264 KK 265 (363)
Q Consensus 264 ~~ 265 (363)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 195
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.2e-16 Score=123.97 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh-cccccCCeeeeEe
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTL----EFANVKVDKNTGRSKGFGFIRFSSHESALKAML-KKHKIGNRICDVR 176 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~-~~~~~~g~~i~v~ 176 (363)
...+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||. +++.+.++.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 56899999999999999999999999975 68999998 589999999999999999999994 5788999999998
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
.+..+
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 76543
No 196
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.3e-15 Score=118.39 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCC---eEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKD---KKVVV 257 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g---~~l~V 257 (363)
.+..++|||+|||+.+++++|+++|++||.|..|.|.++ ++|||||+|.+.++|++|+.. +..+.| ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999865 478999999999999999986 667887 99999
Q ss_pred EEccCCCccc
Q psy15045 258 MEATPKKKMN 267 (363)
Q Consensus 258 ~~a~~~~~~~ 267 (363)
.++.++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999987654
No 197
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=6.5e-16 Score=129.94 Aligned_cols=78 Identities=32% Similarity=0.572 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCC--eeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGN--RICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g--~~i~v~ 176 (363)
...++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+ +++..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 46789999999999999999999999999999999999889999999999999999999999 46888877 999998
Q ss_pred cc
Q psy15045 177 IP 178 (363)
Q Consensus 177 ~a 178 (363)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 198
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=120.25 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
...++|||+|||+++|+++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.+|+.. ++.|+|+.|.|.++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 34589999999999999999999999999999999875 689999999999999999997 7899999999999887
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
..
T Consensus 89 ~~ 90 (103)
T 1s79_A 89 YF 90 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 199
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=117.56 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC-----eee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN-----RIC 173 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g-----~~i 173 (363)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||. ++..++| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999876 899999999999999994 6788888 999
Q ss_pred eEecccCCCC
Q psy15045 174 DVRIPESTKI 183 (363)
Q Consensus 174 ~v~~a~~~~~ 183 (363)
.|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999988754
No 200
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=116.56 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEecccCC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPEST 181 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~a~~~ 181 (363)
..++|||+|||+++++++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|+.....+.++.|.|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999765 58999999999999998766566789999999999887
Q ss_pred CCCC
Q psy15045 182 KIGT 185 (363)
Q Consensus 182 ~~~~ 185 (363)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 201
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=9.8e-16 Score=118.20 Aligned_cols=76 Identities=30% Similarity=0.393 Sum_probs=70.8
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCcc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~ 266 (363)
++|||+|||+.+|+++|+++|++||.|..|.+.+++++||||+|.+.++|++|++. +..++|+.|.|.++.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999988899999999999999999996 77899999999999887643
No 202
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.9e-15 Score=115.53 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=71.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
+++|||+|||..+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|.+|++. +..|+|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 479999999999999999999999999999999865 489999999999999999986 7899999999999998
Q ss_pred CCcc
Q psy15045 263 KKKM 266 (363)
Q Consensus 263 ~~~~ 266 (363)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 203
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=118.29 Aligned_cols=81 Identities=28% Similarity=0.310 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
....++|||+|||+.+++++|+++|++||.|..|.+..+ +++||||+|.+.++|++|+.. ++.|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 344689999999999999999999999999999999865 579999999999999999995 7899999999999
Q ss_pred ccCCCccc
Q psy15045 260 ATPKKKMN 267 (363)
Q Consensus 260 a~~~~~~~ 267 (363)
+.+.....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98865443
No 204
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.4e-15 Score=113.86 Aligned_cols=73 Identities=29% Similarity=0.467 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++. ++.|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 44689999999999999999999999999999999865 478999999999999999987 77899999999875
No 205
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=114.91 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=70.9
Q ss_pred CcceEEEcCCCcCCCHHHHH----HHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 189 VASKVFVGSLTPDLTESDLR----EHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~----~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
..++|||+|||+.+++++|+ ++|++||.|.+|.|+.+ .++||||+|.+.++|++|+.. +..|+|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 35799999999999999999 99999999999999865 389999999999999999996 77999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++...
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 206
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=113.14 Aligned_cols=77 Identities=29% Similarity=0.496 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
....++|||+|||+.+++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+.. ++.|+|+.|.|.++.++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3446899999999999999999999999999999998 55999999999999999986 789999999999998875
Q ss_pred cc
Q psy15045 265 KM 266 (363)
Q Consensus 265 ~~ 266 (363)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 207
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=5.8e-16 Score=131.05 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccC---Ceeee
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIG---NRICD 174 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~---g~~i~ 174 (363)
....++|||+|||.++++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|+. ++..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999995 69999999999999999999994 555554 49999
Q ss_pred Eeccc
Q psy15045 175 VRIPE 179 (363)
Q Consensus 175 v~~a~ 179 (363)
|.||+
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 208
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=1.2e-15 Score=122.67 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++. +..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44689999999999999999999999999999999865 489999999999999999985 78999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 887654
No 209
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=1.3e-15 Score=113.43 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|++. +..++|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999764 689999999999999999976 78999999999997
Q ss_pred c
Q psy15045 261 T 261 (363)
Q Consensus 261 ~ 261 (363)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=113.80 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
...++|||+|||+.+++++|+++|++||.|..|.+. ++||||+|.+.++|++|+.. +..|+|++|.|.++.++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 446899999999999999999999999999999998 78999999999999999986 6789999999999988765
Q ss_pred c
Q psy15045 266 M 266 (363)
Q Consensus 266 ~ 266 (363)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 211
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=114.45 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=67.7
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..++|||+|||..+++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|++|+.. +..++|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3579999999999999999999999999999999865 478999999999999999996 789999999999998
Q ss_pred CC
Q psy15045 262 PK 263 (363)
Q Consensus 262 ~~ 263 (363)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 212
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-15 Score=116.34 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc---CCeeCCeEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ---HVNIKDKKVV 256 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~---~~~~~g~~l~ 256 (363)
.....++|||+|||+.+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|++|+.. +..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3455789999999999999999999999999999999876 489999999999999999985 6799999999
Q ss_pred EEEccCCCccc
Q psy15045 257 VMEATPKKKMN 267 (363)
Q Consensus 257 V~~a~~~~~~~ 267 (363)
|.++.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876554
No 213
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=117.74 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
+..++|||+|||..+++++|+++|++||.|..|.+.++ ++||||+|.+.++|.+|+.. +..|+|+.|.|.++.++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34689999999999999999999999999999999987 99999999999999999976 7899999999999988765
Q ss_pred cc
Q psy15045 266 MN 267 (363)
Q Consensus 266 ~~ 267 (363)
..
T Consensus 102 ~~ 103 (109)
T 1x4g_A 102 MT 103 (109)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 214
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=115.28 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++|| |..|.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4468999999999999999999999999 999999855 478999999999999999943 78999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 92 ~~~~~~~ 98 (104)
T 1wi8_A 92 DQAQDKD 98 (104)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8876543
No 215
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=117.60 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|.++++++ ++|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3578999999999999999999999999999999973 4799999999999999999 4688999999999998
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 216
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=113.53 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=69.6
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
.++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. +..++|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 479999999999999999999999999999999754 588999999999999999995 789999999999998
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
+...
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 217
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=116.55 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
+..++|||+|||+.+++++|+++|++||.|..|.+.++ ++||||+|.+.++|.+|++. +..|+|++|.|.++.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 44689999999999999999999999999999999976 89999999999999999976 7789999999999988654
Q ss_pred c
Q psy15045 266 M 266 (363)
Q Consensus 266 ~ 266 (363)
.
T Consensus 92 ~ 92 (99)
T 2cpj_A 92 L 92 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.7e-16 Score=121.64 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT---GRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~ 177 (363)
...++|||+|||+++++++|+++|++||+|. +.++.++.+ |.++|||||+|.+.++|.+||...+.++|+.+.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3578999999999999999999999999999 888888776 799999999999999999999877778999988876
Q ss_pred ccC
Q psy15045 178 PES 180 (363)
Q Consensus 178 a~~ 180 (363)
+..
T Consensus 85 ~~~ 87 (114)
T 2dnl_A 85 SPT 87 (114)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 219
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=120.44 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCe-EEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAV-VDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i-~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.| ..|.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 345899999999999999999999999999 88888764 689999999999999999998 679999999999998
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++....
T Consensus 93 ~~~~~~ 98 (114)
T 2cpy_A 93 LEDMRE 98 (114)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 220
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=3.4e-15 Score=115.60 Aligned_cols=77 Identities=25% Similarity=0.351 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+. +++.++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999986 4599999999999999994 78899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9877543
No 221
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=113.36 Aligned_cols=75 Identities=29% Similarity=0.359 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
.+..++|||+|||+.+++++|+++|++||.|..|.++++ +++||||+|.+.++|++|++. +..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 344689999999999999999999999999999999865 578999999999999999975 7799999999999
Q ss_pred cc
Q psy15045 260 AT 261 (363)
Q Consensus 260 a~ 261 (363)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 222
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=117.55 Aligned_cols=79 Identities=30% Similarity=0.432 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.++++ +++||||+|.+.++|.+|++. +..|+|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999875 688999999999999999976 77899999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887654
No 223
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=118.56 Aligned_cols=78 Identities=26% Similarity=0.429 Sum_probs=71.9
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ++.|+|+.|.|.++.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 689999999999999999999999999999999875 579999999999999999998 67999999999999887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
....
T Consensus 107 ~~~~ 110 (116)
T 1x4b_A 107 EESG 110 (116)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6543
No 224
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=114.41 Aligned_cols=77 Identities=31% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..++.++|||+|||+.+++++|+++|++||.|..|.++.+ +++||||+|.+.++|++|+.. +..|+|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999999999999999999999999999854 478999999999999999996 789999999999
Q ss_pred EccC
Q psy15045 259 EATP 262 (363)
Q Consensus 259 ~a~~ 262 (363)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 225
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.5e-16 Score=128.51 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEeccc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~ 179 (363)
...++|||+|||+++++++|+++|++|| |.+|+|+.++. ++++|||||+|.+.++|++|| +++..++++.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 3578999999999999999999999999 67999999975 999999999999999999999 45788999999999887
Q ss_pred CCC
Q psy15045 180 STK 182 (363)
Q Consensus 180 ~~~ 182 (363)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 664
No 226
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.3e-15 Score=128.39 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=71.3
Q ss_pred EEeCCHHHHHHHHh--ccc--ccCCeeeeEecccCC-----------------CCCCCCCCcceEEEcCCCcCCCHHHHH
Q psy15045 150 IRFSSHESALKAML--KKH--KIGNRICDVRIPEST-----------------KIGTEEPVASKVFVGSLTPDLTESDLR 208 (363)
Q Consensus 150 V~f~~~~~a~~al~--~~~--~~~g~~i~v~~a~~~-----------------~~~~~~~~~~~l~V~nlp~~~t~e~L~ 208 (363)
.+|.+.++|..|+. +.. .-.|+.....++... .........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67788888877772 222 223444444432110 011122336789999999999999999
Q ss_pred HHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCccc
Q psy15045 209 EHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMN 267 (363)
Q Consensus 209 ~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~~~ 267 (363)
++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+.. +..|+|++|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999865 479999999999999999986 789999999999998876554
No 227
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.8e-15 Score=117.53 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+.. +..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 44689999999999999999999999999999999865 479999999999999999985 78999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 886543
No 228
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=112.49 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||+++++++|+++|++||.|.+|.+++ +||||+|.+.++|.+|+ ++++.++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44788999999999999999999999999999999873 49999999999999999 478899999999999
Q ss_pred ccCCCCC
Q psy15045 178 PESTKIG 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9877543
No 229
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=118.82 Aligned_cols=81 Identities=28% Similarity=0.433 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
....++|||+|||+.+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|++|+.. ++.|+|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 345689999999999999999999999999999999865 468999999999999999997 77999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8876543
No 230
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=115.62 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=71.0
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..++|||+|||+.+++++|+++|++||.|..|.+..+ +++||||+|.+.++|++|+.. +..|+|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4589999999999999999999999999999999853 468999999999999999996 789999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 231
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=112.41 Aligned_cols=76 Identities=32% Similarity=0.466 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
...++|||+|||+.+++++|+++|++||.|..|.+. ++||||+|.+.++|++|+.. +..|+|++|.|.++.++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 446899999999999999999999999999999998 45999999999999999986 7899999999999988644
Q ss_pred c
Q psy15045 266 M 266 (363)
Q Consensus 266 ~ 266 (363)
.
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.3e-15 Score=114.52 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++|| |..|.++++ ++|||||+|.+.++|++|+.. +..|+|++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4468999999999999999999999997 999999865 478999999999999999944 789999999999998
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2dng_A 92 GRKQDK 97 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 866543
No 233
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-15 Score=115.85 Aligned_cols=79 Identities=27% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+.. +..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 44689999999999999999999999999999999865 478999999999999999995 789999999999987
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
....+
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 75444
No 234
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.4e-15 Score=119.21 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
...++|||+|||+++++++|+++|++|| +|..+.|.. +.++|||||+|.+.++|++|| +++..++|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 899998853 347899999999999999999 478899999999999
Q ss_pred ccCC
Q psy15045 178 PEST 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8755
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=8.9e-16 Score=117.45 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLK----EYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~ 174 (363)
.+.++|||+|||.++++++|+ ++|++||.|..|.+++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999 9999999999998873 57789999999999999999994 78899999999
Q ss_pred EecccCCC
Q psy15045 175 VRIPESTK 182 (363)
Q Consensus 175 v~~a~~~~ 182 (363)
|.++.++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998764
No 236
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=111.26 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc---CCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ---HVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~---~~~~~g~~l~V~~a~ 261 (363)
.+..++|||+|||+.+++++|+++|++||.|..|.+.++ ++||||+|.+.++|.+|+.. +..++|++|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345689999999999999999999999999999999975 89999999999999999984 579999999999974
No 237
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.8e-15 Score=118.60 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=67.9
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCC-CeEEEEec-CCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYG-AVVDVLIP-KPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G-~i~~i~i~-~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
..+|||+|||+++++++|+++|++|| .|..+.+. ++++|||||+|.+.++|++|++. +..|+|+.|.|.++....
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 47999999999999999999999999 89999996 45899999999999999999986 789999999999987543
No 238
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-17 Score=128.84 Aligned_cols=83 Identities=23% Similarity=0.330 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEF--------ANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN 170 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g 170 (363)
.+.++|||+|||.++++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+. ++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 36789999999999999999999999999998 9999998899999999999999999999994 6889999
Q ss_pred eeeeEecccCCCC
Q psy15045 171 RICDVRIPESTKI 183 (363)
Q Consensus 171 ~~i~v~~a~~~~~ 183 (363)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987754
No 239
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=117.98 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhc-CCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCe-eCCeEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEY-YGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVN-IKDKKVVVM 258 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~-~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~-~~g~~l~V~ 258 (363)
....++|||+|||+.+++++|+++|++ ||.|..|.|+.+ ++|||||+|.+.++|.+|+.. +.. |+|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 344689999999999999999999999 999999999865 689999999999999999996 567 999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
++.++..+.
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 240
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=129.10 Aligned_cols=83 Identities=34% Similarity=0.514 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
.+...++|||+|||+++++++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44568899999999999999999999999999999999997 99999999999999999999995 6889999999999
Q ss_pred cccCCC
Q psy15045 177 IPESTK 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987754
No 241
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.8e-15 Score=117.20 Aligned_cols=76 Identities=28% Similarity=0.471 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999987 689999999999999999 478899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987643
No 242
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.1e-15 Score=112.30 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcC--CCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYY--GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~--G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
...++|||+|||+.+++++|+++|++| |.|..|.+. ++||||+|.+.++|++|+.. +..|+|++|.|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 346899999999999999999999999 999999886 78999999999999999995 78999999999999886
Q ss_pred Cc
Q psy15045 264 KK 265 (363)
Q Consensus 264 ~~ 265 (363)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 243
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=1.4e-15 Score=127.61 Aligned_cols=78 Identities=32% Similarity=0.565 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCee--eeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRI--CDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~--i~v~ 176 (363)
...++|||+|||.++++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+. ++..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 356899999999999999999999999999999999998899999999999999999999994 688999965 7776
Q ss_pred cc
Q psy15045 177 IP 178 (363)
Q Consensus 177 ~a 178 (363)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=3.1e-15 Score=116.39 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCee---CCeEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNI---KDKKVV 256 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~---~g~~l~ 256 (363)
....++|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+.. +..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345689999999999999999999999999999999875 679999999999999999986 5566 889999
Q ss_pred EEEccCCCcc
Q psy15045 257 VMEATPKKKM 266 (363)
Q Consensus 257 V~~a~~~~~~ 266 (363)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887654
No 245
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=117.88 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
....++|||+|||..+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|+.. +..|+|++|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 345689999999999999999999999999999999865 589999999999999999986 789999999999998
Q ss_pred CC
Q psy15045 262 PK 263 (363)
Q Consensus 262 ~~ 263 (363)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 246
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=5.2e-15 Score=113.31 Aligned_cols=74 Identities=22% Similarity=0.374 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEe
Q psy15045 100 PVQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVR 176 (363)
Q Consensus 100 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~ 176 (363)
....++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44789999999998 99999999999999999999883 7899999999999999994 6888999999999
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98765
No 247
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=111.47 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999873 499999999999999994 68899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987744
No 248
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=117.23 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||+.+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34689999999999999999999999999999999855 479999999999999999986 78999999999999
Q ss_pred cCCCc
Q psy15045 261 TPKKK 265 (363)
Q Consensus 261 ~~~~~ 265 (363)
.++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88653
No 249
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-14 Score=111.61 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQF--GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~ 176 (363)
...++|||+|||+++++++|+++|++| |.|..|++. +|||||+|.+.++|.+|+ +++..++|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 899988764 679999999999999999 46889999999999
Q ss_pred cccCCCCC
Q psy15045 177 IPESTKIG 184 (363)
Q Consensus 177 ~a~~~~~~ 184 (363)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99887543
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=114.05 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cc-cccCCeeeeE
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGT-LEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KK-HKIGNRICDV 175 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~-~~~~g~~i~v 175 (363)
+...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+. ++ ..++|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6665553 37899999999999999994 67 8899999999
Q ss_pred ecccCCCCC
Q psy15045 176 RIPESTKIG 184 (363)
Q Consensus 176 ~~a~~~~~~ 184 (363)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887544
No 251
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.3e-15 Score=113.98 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
...++|||+|||+.+++++|+++|++||.|..|.+.++ +++||||+|.+.++|++|+.. +..|+|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 44689999999999999999999999999999999864 579999999999999999996 7789999999999988
Q ss_pred CCcc
Q psy15045 263 KKKM 266 (363)
Q Consensus 263 ~~~~ 266 (363)
....
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 252
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=117.52 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.4
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..+..++|||+|||..+++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|++. +..|+|++|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999854 478999999999999999985 789999999999
Q ss_pred EccCCC
Q psy15045 259 EATPKK 264 (363)
Q Consensus 259 ~a~~~~ 264 (363)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998864
No 253
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-15 Score=111.42 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~i~v~~a~~ 180 (363)
..++|||+|||+++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|+ ++++.++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 56799999999999999999999999999987 56655665 9999999999999999 568889999999999876
Q ss_pred CCC
Q psy15045 181 TKI 183 (363)
Q Consensus 181 ~~~ 183 (363)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 254
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=6.5e-15 Score=115.43 Aligned_cols=74 Identities=18% Similarity=0.373 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIPWT-FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
..++|||+|||++ +++++|+++|++||.|.+|.| ++|||||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5689999999999 999999999999999999998 4789999999999999999 4688999999999999
Q ss_pred cCCCC
Q psy15045 179 ESTKI 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.....
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 86543
No 255
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.2e-15 Score=116.22 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=68.6
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
..++|||+|||..+++++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|+.. +..|+|+.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 358999999999999999999999999999999985 489999999999999999986 78999999999998764
No 256
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=115.43 Aligned_cols=78 Identities=23% Similarity=0.375 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 367899999999999999999999999988665 2578999999999999999999995 688999999999999
Q ss_pred cCCCC
Q psy15045 179 ESTKI 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87643
No 257
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=116.32 Aligned_cols=80 Identities=25% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeE--------EEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVV--------DVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIK 251 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~--------~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~ 251 (363)
....++|||+|||+.+++++|+++|++||.|. .|.|+.+ ++|||||+|.+.++|++|+.. +..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999998 6888765 578999999999999999985 78999
Q ss_pred CeEEEEEEccCCCcc
Q psy15045 252 DKKVVVMEATPKKKM 266 (363)
Q Consensus 252 g~~l~V~~a~~~~~~ 266 (363)
|+.|+|.++.++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887654
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.8e-15 Score=113.84 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE-EEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVD-VLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~-i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 34689999999999999999999999999987 888754 689999999999999999998 779999999999987
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
++..
T Consensus 93 ~~~~ 96 (104)
T 1wg5_A 93 RAEV 96 (104)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 6553
No 259
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=113.61 Aligned_cols=76 Identities=26% Similarity=0.348 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
....++|||+|||+.+++++|+++|++||.|..|.++++ +++||||+|.+.++|.+|+.. +..|+|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 344689999999999999999999999999999999865 478999999999999999995 78999999999997
Q ss_pred cC
Q psy15045 261 TP 262 (363)
Q Consensus 261 ~~ 262 (363)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 260
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=5.6e-15 Score=122.44 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999876 4899999999999999999 468899999999999
Q ss_pred ccCCC
Q psy15045 178 PESTK 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98763
No 261
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=4.7e-15 Score=115.91 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=69.9
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
....++|||+|||+.+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+.. +..|+|+.|.|.++.++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 3446899999999999999999999999999999998 89999999999999999986 789999999999998876
Q ss_pred cc
Q psy15045 265 KM 266 (363)
Q Consensus 265 ~~ 266 (363)
.+
T Consensus 105 ~r 106 (108)
T 2jvo_A 105 KR 106 (108)
T ss_dssp --
T ss_pred CC
Confidence 54
No 262
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=6.7e-16 Score=119.04 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=70.9
Q ss_pred CcceEEEcCCCc------CCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC-eE
Q psy15045 189 VASKVFVGSLTP------DLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD-KK 254 (363)
Q Consensus 189 ~~~~l~V~nlp~------~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g-~~ 254 (363)
..++|||+|||. .+++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++|+.. +..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 358999999999 9999999999999999999999854 679999999999999999986 789999 99
Q ss_pred EEEEEccCCCcc
Q psy15045 255 VVVMEATPKKKM 266 (363)
Q Consensus 255 l~V~~a~~~~~~ 266 (363)
|.|.++.++...
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999886543
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=116.78 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||+++++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+ +++..++|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998864 4789999999999999999 46889999999999987
Q ss_pred CC
Q psy15045 180 ST 181 (363)
Q Consensus 180 ~~ 181 (363)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 264
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=9.6e-15 Score=111.83 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCc-CCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 188 PVASKVFVGSLTP-DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 188 ~~~~~l~V~nlp~-~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
+..++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. +..++|+.|.|.+++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 4478999999998 99999999999999999999995 89999999999999999996 779999999999988753
No 265
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=6.4e-15 Score=110.72 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=67.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 479999999999999999999999999999999865 589999999999999999944 78999999999998764
No 266
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.7e-15 Score=120.36 Aligned_cols=78 Identities=32% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
.++.++|||+|||+.+++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|+.. +..|+|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 344689999999999999999999999999999999864 689999999999999999996 7899999999999
Q ss_pred ccCCC
Q psy15045 260 ATPKK 264 (363)
Q Consensus 260 a~~~~ 264 (363)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98865
No 267
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=2.6e-15 Score=109.13 Aligned_cols=69 Identities=33% Similarity=0.536 Sum_probs=64.1
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++. ++.|+|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999865 579999999999999999987 78999999999875
No 268
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=114.78 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=68.8
Q ss_pred CCCcceEEEcCCCc-CCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 187 EPVASKVFVGSLTP-DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 187 ~~~~~~l~V~nlp~-~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
.++.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+.. +..+.|++|.|.++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 34568999999998 99999999999999999999996 89999999999999999996 77899999999999876
Q ss_pred Ccc
Q psy15045 264 KKM 266 (363)
Q Consensus 264 ~~~ 266 (363)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 544
No 269
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=6.7e-15 Score=116.82 Aligned_cols=76 Identities=24% Similarity=0.386 Sum_probs=68.7
Q ss_pred CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 186 ~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..+..++|||+|||+++++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|++. +..|+|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445789999999999999999999999999999999865 589999999999999999986 789999999999
Q ss_pred Ecc
Q psy15045 259 EAT 261 (363)
Q Consensus 259 ~a~ 261 (363)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 270
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-14 Score=109.99 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|| ++++++|+++|++||+|.+|.|. .++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999985 458999999999999999994 68899999999999
Q ss_pred ccCCCCCC
Q psy15045 178 PESTKIGT 185 (363)
Q Consensus 178 a~~~~~~~ 185 (363)
+.++....
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98875443
No 271
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.4e-15 Score=113.46 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 101 VQNTDLVVLGIPW-TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 101 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
.+.++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4688999999998 99999999999999999999984 6899999999999999994 68889999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987644
No 272
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=113.17 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=71.0
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEec-C-----CCCcEEEEEecCHHHHHHHHhc----CCeeCCeEEEE
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIP-K-----PFREFAFVTFELDSVAKSLIGQ----HVNIKDKKVVV 257 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~-~-----~~~g~afV~F~~~~~A~~Ai~~----~~~~~g~~l~V 257 (363)
..++|||+|||+.+++++|+++|++||. |..|.++ . .++|||||+|.+.++|.+|+.. +..++|++|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 9999998 3 2689999999999999999996 26899999999
Q ss_pred EEccCCCccc
Q psy15045 258 MEATPKKKMN 267 (363)
Q Consensus 258 ~~a~~~~~~~ 267 (363)
.++.++....
T Consensus 87 ~~a~~~~~~~ 96 (109)
T 2dis_A 87 DWAEPEIDVD 96 (109)
T ss_dssp EESCSSCSTT
T ss_pred EEcCCCCCcC
Confidence 9999877644
No 273
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-14 Score=109.21 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
...++|||+|| .+++++|+++|++||.|..|.+.+ +++||||+|.+.++|.+|+.. +..|+|++|.|.++.++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 34689999996 899999999999999999999974 599999999999999999976 7799999999999988765
Q ss_pred cc
Q psy15045 266 MN 267 (363)
Q Consensus 266 ~~ 267 (363)
..
T Consensus 90 ~~ 91 (97)
T 1x5p_A 90 LD 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 274
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=115.16 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCCcceEEE--cCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCee-----CCeEEEE
Q psy15045 187 EPVASKVFV--GSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNI-----KDKKVVV 257 (363)
Q Consensus 187 ~~~~~~l~V--~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~-----~g~~l~V 257 (363)
..++++||| +||++.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++. +..+ .|++|.|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 345689999 779999999999999999999999999865 89999999999999999997 6677 6889999
Q ss_pred EEccCCCccc
Q psy15045 258 MEATPKKKMN 267 (363)
Q Consensus 258 ~~a~~~~~~~ 267 (363)
.|+.......
T Consensus 101 ~~a~~~p~~~ 110 (114)
T 2cq2_A 101 NFVEKVQWSG 110 (114)
T ss_dssp EEESCCCCSS
T ss_pred EecccCcccC
Confidence 9998766554
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=118.39 Aligned_cols=81 Identities=11% Similarity=0.259 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCcCCCHHHHH----HHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLR----EHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~----~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
.++.++|||+|||+.+++++|+ ++|++||.|.+|.+.+. ++|||||+|.+.++|.+|+.. +..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3446899999999999999876 69999999999998753 789999999999999999986 789999999999
Q ss_pred EccCCCccc
Q psy15045 259 EATPKKKMN 267 (363)
Q Consensus 259 ~a~~~~~~~ 267 (363)
|+.++....
T Consensus 106 ~a~~~~~~~ 114 (127)
T 2a3j_A 106 FSETPQSQV 114 (127)
T ss_dssp ECCCCCHHH
T ss_pred EccCcchhc
Confidence 999876554
No 276
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.8e-15 Score=111.40 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFA-NVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
..++|||+|||+++++++|+++|++||.|.+| .|+.++.++ .|||+|.+.++|.+|+ +++..++|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999999999999999999999999999 488776544 3999999999999999 4788999999999999
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 877
No 277
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=5.3e-15 Score=113.06 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCcCCCHHHHH----HHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 188 PVASKVFVGSLTPDLTESDLR----EHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~----~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
+++++|||+|||+.+++++|+ ++|++||.|..|.+.+. ++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999 99999999999999752 689999999999999999986 7899999999999
Q ss_pred ccCCCcc
Q psy15045 260 ATPKKKM 266 (363)
Q Consensus 260 a~~~~~~ 266 (363)
+.++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987654
No 278
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=115.38 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=70.1
Q ss_pred CcceEEEcCCCcCCCHHHHH---HHhhcCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 189 VASKVFVGSLTPDLTESDLR---EHFEYYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~---~~F~~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
..++|||+|||+.+++++|+ ++|++||.|..|.++++ ++|||||+|.+.++|++|++. +..|+|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 99999999999999865 348999999999999999996 789999999
Q ss_pred EEEEccCCCc
Q psy15045 256 VVMEATPKKK 265 (363)
Q Consensus 256 ~V~~a~~~~~ 265 (363)
.|.+|.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999988753
No 279
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.9e-15 Score=112.42 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=67.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCC-eEEEEecCCCCcEEEEEecCHHHHHHHHhc--C-CeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGA-VVDVLIPKPFREFAFVTFELDSVAKSLIGQ--H-VNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~-i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~-~~~~g~~l~V~~a~~~ 263 (363)
...++|||+|||+.+++++|+++|++||. |..+.+. +++||||+|.+.++|++|++. + ..|+|++|.|.++.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34589999999999999999999999999 6666653 489999999999999999986 6 8999999999999886
Q ss_pred Ccc
Q psy15045 264 KKM 266 (363)
Q Consensus 264 ~~~ 266 (363)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 280
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=8.7e-16 Score=115.97 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=63.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCC--CeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYG--AVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G--~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
.+|||+|||+++++++|+++|++|| .|.++.++.+ ++|||||+|.+.++|++|++. +..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999998765 579999999999999999976 779999999999998
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87544
No 281
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=5.3e-15 Score=116.95 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=64.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeE-----EEEEEccC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKK-----VVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~-----l~V~~a~~ 262 (363)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+. +..|+|+. |.|..+.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 579999999999999999999999999999999877 9999999999999999996 77899988 77776665
Q ss_pred C
Q psy15045 263 K 263 (363)
Q Consensus 263 ~ 263 (363)
+
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 282
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=124.60 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----EecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANV-----KVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRIC 173 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-----~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i 173 (363)
...++|||+|||+++++++|+++|++||.|..+.+ +....++.++|||||+|.+.++|.+|+ +++..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35789999999999999999999999999876410 111247899999999999999999999 46889999999
Q ss_pred eEecccCCCC
Q psy15045 174 DVRIPESTKI 183 (363)
Q Consensus 174 ~v~~a~~~~~ 183 (363)
.|.++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 283
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=112.98 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeE-EEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeE----E
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVV-DVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKK----V 255 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~-~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~----l 255 (363)
...++|||+|||+.+++++|+++|++||.|. .|.++++ ++|||||+|.+.++|++|+.. +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468999999999999999999999999999 9999865 468999999999999999996 77999998 9
Q ss_pred EEEEccCCC
Q psy15045 256 VVMEATPKK 264 (363)
Q Consensus 256 ~V~~a~~~~ 264 (363)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988754
No 284
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=116.05 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
.++|||+|||+.+++++|+++|++||.|..|.|++ +++||||+|.+.++|++|+.. +..|+|+.|.|.|+....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 57999999999999999999999999999999986 589999999999999999986 789999999999987754
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9e-15 Score=111.92 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=67.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEec-CCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~-~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
+..++|||+|||+.+++++|+++|++||.|. +.++ ..++|||||+|.+.++|++|+.. +..|+|+.|.|.++.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3468999999999999999999999999996 4444 34789999999999999999986 789999999999998865
Q ss_pred c
Q psy15045 265 K 265 (363)
Q Consensus 265 ~ 265 (363)
.
T Consensus 96 ~ 96 (97)
T 2e5j_A 96 D 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 286
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=1.8e-14 Score=121.55 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 47899999999999999999999999999999999998899999999999999999999994 6889999999999873
No 287
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=114.23 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
...++|||+|||..+++++|+++|++|| |.+|.|.++ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 3468999999999999999999999999 999999865 489999999999999999954 78999999999999
Q ss_pred cCCC
Q psy15045 261 TPKK 264 (363)
Q Consensus 261 ~~~~ 264 (363)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8864
No 288
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.2e-14 Score=113.28 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 44689999999999999999999999999999999865 578999999999999999996 789999999999985
No 289
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=9.1e-15 Score=112.31 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE--------EEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--------VLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIK 251 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--------i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~ 251 (363)
.+..++|||+|||+.+++++|+++|++||.|.. +.++.+ ++|||||+|.+.++|++|++. +..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344689999999999999999999999999999 888765 478999999999999999985 78999
Q ss_pred CeEEEEEEcc
Q psy15045 252 DKKVVVMEAT 261 (363)
Q Consensus 252 g~~l~V~~a~ 261 (363)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 290
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-14 Score=110.33 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
....++|||+|||+.+++++|+++|++||.| .++.+ +++||||+|.+.++|++|+.. +..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3456899999999999999999999999988 34433 689999999999999999995 77999999999999
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887543
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=5.7e-15 Score=117.36 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCC---eEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEE
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGA---VVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVME 259 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~---i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~ 259 (363)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+ ++|||||+|.+.++|++|++. ++.|+|+.|.|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 34589999999999999999999999999 889988754 578999999999999999997 6799999999999
Q ss_pred ccCCCcc
Q psy15045 260 ATPKKKM 266 (363)
Q Consensus 260 a~~~~~~ 266 (363)
+.+++..
T Consensus 95 a~~~~~~ 101 (118)
T 2db1_A 95 SHRTEMD 101 (118)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9876533
No 292
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=2.7e-15 Score=109.03 Aligned_cols=69 Identities=33% Similarity=0.560 Sum_probs=64.3
Q ss_pred eEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 192 ~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
+|||+|||+.+++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|++. ++.++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999864 589999999999999999998 77999999999875
No 293
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=3.5e-14 Score=122.60 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~ 177 (363)
+...++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567999999999999999999999999999999999998899999999999999999999994 68899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 294
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9.8e-15 Score=113.46 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=69.6
Q ss_pred CcceEEEcCCCcCC------CHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCe-EEE
Q psy15045 189 VASKVFVGSLTPDL------TESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDK-KVV 256 (363)
Q Consensus 189 ~~~~l~V~nlp~~~------t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~-~l~ 256 (363)
..++|||+|||+.+ ++++|+++|++||.|..|.+++. ++|||||+|.+.++|.+|+.. +..|+|+ +|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 36899999999999 78999999999999999999853 689999999999999999996 7899998 999
Q ss_pred EEEccCCCc
Q psy15045 257 VMEATPKKK 265 (363)
Q Consensus 257 V~~a~~~~~ 265 (363)
|.++.+..+
T Consensus 94 V~~a~~~~k 102 (105)
T 2nlw_A 94 VNLFTDFDK 102 (105)
T ss_dssp EECSCCCCC
T ss_pred EEEcchHhh
Confidence 999987654
No 295
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=7.7e-15 Score=115.90 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
+.+++|||+|||+.+++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+.. +..++|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34589999999999999999999999999999999765 689999999999999999996 78999999999999876
Q ss_pred Ccc
Q psy15045 264 KKM 266 (363)
Q Consensus 264 ~~~ 266 (363)
...
T Consensus 86 ~~~ 88 (115)
T 3lqv_A 86 RAF 88 (115)
T ss_dssp HHT
T ss_pred hhh
Confidence 543
No 296
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=108.63 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
...++|||+|||+.+++++|+++|++| .|..|.++++ ++|||||+|.+.++|++|+.. +..|+|+.|.|.++.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 345899999999999999999999999 9999999865 578999999999999999996 6799999999999988
Q ss_pred CCc
Q psy15045 263 KKK 265 (363)
Q Consensus 263 ~~~ 265 (363)
+.+
T Consensus 87 ~~~ 89 (91)
T 2dgw_A 87 GPS 89 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 297
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.5e-15 Score=108.96 Aligned_cols=70 Identities=30% Similarity=0.467 Sum_probs=65.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
++|||+|||+++++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|++. +..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999999865 579999999999999999997 67899999999986
No 298
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-15 Score=113.34 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVME 259 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~ 259 (363)
.+..++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++. +..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 344689999999999999999999999999986655532 579999999999999999976 6799999999999
Q ss_pred ccCCC
Q psy15045 260 ATPKK 264 (363)
Q Consensus 260 a~~~~ 264 (363)
+.++.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87653
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9.1e-15 Score=109.82 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEeccc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~ 179 (363)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|+ +++..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999884 56899999999999999999 46889999999999987
Q ss_pred CC
Q psy15045 180 ST 181 (363)
Q Consensus 180 ~~ 181 (363)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 300
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.6e-14 Score=115.72 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=69.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcE-EEEEecCHHHHHHHHhc--CCeeCC--eEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREF-AFVTFELDSVAKSLIGQ--HVNIKD--KKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~-afV~F~~~~~A~~Ai~~--~~~~~g--~~l~V~~a~~~~ 264 (363)
...|||+||++.+|+++|+++|++||.|.+|.+.++.++| |||+|.+.++|++|++. +..|.| ++|+|.|+++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 3578899999999999999999999999999998777888 99999999999999998 788887 899999998865
No 301
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.4e-14 Score=140.33 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a 178 (363)
...++|||+|||+.+|+++|.++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+|| ++++.|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999 4688999999999999
Q ss_pred cCCC
Q psy15045 179 ESTK 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8764
No 302
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.9e-15 Score=116.89 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=70.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ++.|+|+.|.|.++.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 679999999999999999999999999999999854 679999999999999999943 78999999999999887
Q ss_pred Cccc
Q psy15045 264 KKMN 267 (363)
Q Consensus 264 ~~~~ 267 (363)
..+.
T Consensus 105 ~~~~ 108 (114)
T 2cq4_A 105 KNRL 108 (114)
T ss_dssp HHHH
T ss_pred ccCC
Confidence 6544
No 303
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=7.1e-14 Score=111.38 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeE-EEEEeCCHHHHHHHH--hcccccCC--eeeeEe
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF-GFIRFSSHESALKAM--LKKHKIGN--RICDVR 176 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~al--~~~~~~~g--~~i~v~ 176 (363)
....|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+ +++..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999998652 286 999999999999999 47888887 689999
Q ss_pred cccCCC
Q psy15045 177 IPESTK 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998764
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.6e-15 Score=114.64 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=64.5
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccccc-----CCe
Q psy15045 101 VQNTDLVV--LGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKI-----GNR 171 (363)
Q Consensus 101 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~-----~g~ 171 (363)
.++++||| +||++++++++|+++|++||+|.+|.|+.+ ||||||+|.+.++|++|+. ++..+ .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788999 779999999999999999999999988643 7999999999999999994 67766 578
Q ss_pred eeeEecccCC
Q psy15045 172 ICDVRIPEST 181 (363)
Q Consensus 172 ~i~v~~a~~~ 181 (363)
+|.|.++..-
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 8888887643
No 305
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.1e-15 Score=113.02 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
...++|||+|||+++|+++|+++|++||.+ .|.|+.+ ++|||||+|.+.++|++|++. +..|+|+.|.|..+.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 345899999999999999999999999955 8888755 578999999999999999976 6799999999998776
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 306
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=112.69 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=68.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 264 (363)
..+|||+|||+++++++|+++|+.| .|..|.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|..+.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccc
Confidence 5799999999999999999999999 8999999865 689999999999999999976 779999999999987754
Q ss_pred c
Q psy15045 265 K 265 (363)
Q Consensus 265 ~ 265 (363)
.
T Consensus 95 ~ 95 (109)
T 2dnn_A 95 W 95 (109)
T ss_dssp H
T ss_pred h
Confidence 3
No 307
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=4.4e-14 Score=117.45 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCC--eeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGN--RICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g--~~i~v~ 176 (363)
....+|||+||++.+++++|+++|++||+|++|+|..+ .++|||||+|.+.++|++|+. ++..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34567999999999999999999999999999998654 257999999999999999994 6888865 999999
Q ss_pred cccCCC
Q psy15045 177 IPESTK 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
|+.++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998774
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=110.50 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
....++|||+|||+.+++++|+++|++||.|..+.....++|||||+|.+.++|.+|+.. +..|+|+.|.|.++.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 345689999999999999999999999999887733333789999999999999999996 679999999999998865
Q ss_pred cc
Q psy15045 265 KM 266 (363)
Q Consensus 265 ~~ 266 (363)
..
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 309
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=119.54 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE--EEecCC-----CCcEEEEEecCHHHHHHHHhc--CC----eeCCeE
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIPKP-----FREFAFVTFELDSVAKSLIGQ--HV----NIKDKK 254 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~----~~~g~~ 254 (363)
...++|||+|||+.+|+++|+++|++||.|.. |+|+++ ++|||||+|.+. +|.+|+.. +. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44689999999999999999999999999976 888866 589999999999 99999987 66 899999
Q ss_pred EEEEEccCCCcc
Q psy15045 255 VVVMEATPKKKM 266 (363)
Q Consensus 255 l~V~~a~~~~~~ 266 (363)
|.|.++.++...
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999886543
No 310
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.7e-14 Score=115.50 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=68.5
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.++.+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 689999999999999999999999999999999754 589999999999999999954 78999999999998864
Q ss_pred C
Q psy15045 264 K 264 (363)
Q Consensus 264 ~ 264 (363)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 311
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5e-15 Score=114.74 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=71.9
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
..++|||+|||+.+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|++. +..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3589999999999999999999999999999999855 479999999999999999985 779999999999999
Q ss_pred CCCccc
Q psy15045 262 PKKKMN 267 (363)
Q Consensus 262 ~~~~~~ 267 (363)
++....
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 987654
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-14 Score=107.16 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=66.2
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCCCcc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~~ 266 (363)
.++|||+|||+.+++++|+++|++||.|.+|.+.+....||||+|.+.++|.+|+.. ++.|+|+.|.|.++.++...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCCC
Confidence 479999999999999999999999999999844333222999999999999999997 67999999999988765543
No 313
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=121.12 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=69.1
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCC--CeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYG--AVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G--~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.++|||+|||+.+++++|+++|++|| .|..|.|+.+ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999755 589999999999999999997 78999999999999
Q ss_pred cCCC
Q psy15045 261 TPKK 264 (363)
Q Consensus 261 ~~~~ 264 (363)
.++.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 8754
No 314
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=4.2e-14 Score=113.25 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|.+|+.. +..|+|+.|.|.+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 44689999999999999999999999999999999875 689999999999999999995 779999999999998
Q ss_pred CCCcc
Q psy15045 262 PKKKM 266 (363)
Q Consensus 262 ~~~~~ 266 (363)
+....
T Consensus 113 ~~~~~ 117 (124)
T 2kt5_A 113 SQIDL 117 (124)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 86543
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=3.5e-14 Score=113.72 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeE-EEEEeCCHHHHHHHH--hcccccCC--eeeeEe
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF-GFIRFSSHESALKAM--LKKHKIGN--RICDVR 176 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~al--~~~~~~~g--~~i~v~ 176 (363)
..-.|||+||++.+|+++|+++|++||+|.+|+|+.+. +|| |||+|.+.++|.+|+ +++..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 45678899999999999999999999999999988653 677 999999999999999 57888988 899999
Q ss_pred cccCCC
Q psy15045 177 IPESTK 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
+++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
No 316
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=5.1e-15 Score=112.71 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
+..++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++. ++.|+|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999987666542 579999999999999999985 78999999999987
Q ss_pred cC
Q psy15045 261 TP 262 (363)
Q Consensus 261 ~~ 262 (363)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 317
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=4.1e-14 Score=122.26 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeeeEecccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPES 180 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~v~~a~~ 180 (363)
..++|||+|||+++++++|+++|++||+|.+|+|++++ ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999985 699999999999999999999953 6689999999998765
Q ss_pred C
Q psy15045 181 T 181 (363)
Q Consensus 181 ~ 181 (363)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 318
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=108.86 Aligned_cols=80 Identities=28% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecC--CCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 187 EPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK--PFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~--~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
....++|||+|||+.+++++|+++|+.|+.|.-+.... .+++||||+|.+.++|++|+.. ++.|+|+.|.|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 34578999999999999999999999885443333211 1579999999999999999985 7899999999999988
Q ss_pred CCcc
Q psy15045 263 KKKM 266 (363)
Q Consensus 263 ~~~~ 266 (363)
+...
T Consensus 92 ~~~~ 95 (102)
T 2fc8_A 92 KGEG 95 (102)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 319
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=107.84 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=61.1
Q ss_pred ceEEEcCCCcCC------CHHHHHHHhhcCCCeEEEEecCC---CCcEEEEEecCHHHHHHHHhc--CCeeCCe-EEEE
Q psy15045 191 SKVFVGSLTPDL------TESDLREHFEYYGAVVDVLIPKP---FREFAFVTFELDSVAKSLIGQ--HVNIKDK-KVVV 257 (363)
Q Consensus 191 ~~l~V~nlp~~~------t~e~L~~~F~~~G~i~~i~i~~~---~~g~afV~F~~~~~A~~Ai~~--~~~~~g~-~l~V 257 (363)
++|||+|||..+ ++++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+.. +..|+|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 77999999999999999999853 689999999999999999997 7789998 8776
No 320
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=3e-14 Score=106.53 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccC
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQF----G-------TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIG 169 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~ 169 (363)
..++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ +++..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 57899999999999999999999999 8 8999998765 799999999999999999 4588899
Q ss_pred CeeeeEec
Q psy15045 170 NRICDVRI 177 (363)
Q Consensus 170 g~~i~v~~ 177 (363)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999874
No 321
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=113.11 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCe----EEEEecC-CCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAV----VDVLIPK-PFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i----~~i~i~~-~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
++.++|||+|||+.+++++|+++|++||.| ..+.+.. .++|||||+|.+.++|++|+.. +..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346899999999999999999999999998 5555543 3789999999999999999986 77999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
.++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9876554
No 322
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=107.97 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=68.6
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEE-ecCC-CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-IPKP-FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~-i~~~-~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
..++|||+|||+.+++++|+++|++||.|..|+ ++.+ ..+.|||+|.+.++|.+|+.. +..|+|++|.|.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 358999999999999999999999999999994 7765 456699999999999999986 789999999999999874
No 323
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=112.05 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=68.3
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCee--------CCe
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNI--------KDK 253 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~--------~g~ 253 (363)
...++|||+|||+.+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|+.. +..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 44689999999999999999999999999999999865 578999999999999999986 6667 578
Q ss_pred EEEEEEccCC
Q psy15045 254 KVVVMEATPK 263 (363)
Q Consensus 254 ~l~V~~a~~~ 263 (363)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=1e-14 Score=112.66 Aligned_cols=79 Identities=27% Similarity=0.506 Sum_probs=70.4
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEccCCC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~ 264 (363)
..++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+..++.++|+.|.|.++.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCc
Confidence 4689999999999999999999999999999999865 579999999999999999997778999999999998876
Q ss_pred ccc
Q psy15045 265 KMN 267 (363)
Q Consensus 265 ~~~ 267 (363)
...
T Consensus 88 ~~~ 90 (102)
T 2xs2_A 88 NLS 90 (102)
T ss_dssp ---
T ss_pred chh
Confidence 543
No 325
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-14 Score=114.78 Aligned_cols=73 Identities=29% Similarity=0.478 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
...++|||+|||..+++++|+++|++||.|..+.++++ ++|||||+|.+.++|++|++. +..|+|++|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 44789999999999999999999999999999999865 689999999999999999976 67899999999885
No 326
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=9.3e-15 Score=118.79 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCC---eEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEE
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGA---VVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVME 259 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~---i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~ 259 (363)
...++|||+|||+++|+++|+++|++||. |..|.|+++ ++|||||+|.+.++|++|++. +..|+|+.|.|.+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 34589999999999999999999999999 888888865 578999999999999999996 6799999999999
Q ss_pred ccCCCc
Q psy15045 260 ATPKKK 265 (363)
Q Consensus 260 a~~~~~ 265 (363)
+.+++.
T Consensus 122 a~~~e~ 127 (136)
T 2hgl_A 122 SHRTEM 127 (136)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 877653
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-15 Score=114.27 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCC---eEEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEE
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGA---VVDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVME 259 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~---i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~ 259 (363)
...++|||+|||+++|+++|+++|+.||. |..|.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 34689999999999999999999999998 899999865 689999999999999999997 6789999999999
Q ss_pred ccCCCcc
Q psy15045 260 ATPKKKM 266 (363)
Q Consensus 260 a~~~~~~ 266 (363)
+.++...
T Consensus 89 a~~~~~~ 95 (107)
T 2lmi_A 89 INNEDVD 95 (107)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9886533
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=1.4e-14 Score=115.91 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=67.5
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeE--EEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEcc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVV--DVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEAT 261 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~--~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 261 (363)
..++|||+|||+++|+++|+++|++| .|. .|.|+.+ ++|||||+|.+.++|++|++. +..|+|+.|.|..+.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 35789999999999999999999999 676 8998865 689999999999999999998 779999999999887
Q ss_pred CCC
Q psy15045 262 PKK 264 (363)
Q Consensus 262 ~~~ 264 (363)
+++
T Consensus 120 ~~e 122 (126)
T 2hgm_A 120 QEE 122 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 329
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=7.2e-14 Score=111.38 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=65.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcE-EEEEecCHHHHHHHHhc--CCeeCC--eEEEEEEccCCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREF-AFVTFELDSVAKSLIGQ--HVNIKD--KKVVVMEATPKK 264 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~-afV~F~~~~~A~~Ai~~--~~~~~g--~~l~V~~a~~~~ 264 (363)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|.+|++. +..|.| +.|+|.+|+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 45679999999999999999999999999999765 586 99999999999999997 778877 699999999875
No 330
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=104.46 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=62.5
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeee
Q psy15045 103 NTD-LVVLGIPWTFTDND----LKEYFEQF-GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICD 174 (363)
Q Consensus 103 ~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~ 174 (363)
..+ |||+|||.++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|+ +++..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 55899999 599987 33 99999999999999999 579999999999
Q ss_pred EecccCCCC
Q psy15045 175 VRIPESTKI 183 (363)
Q Consensus 175 v~~a~~~~~ 183 (363)
|.+|..+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999988753
No 331
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=5.5e-14 Score=122.65 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=70.7
Q ss_pred CcceEEEcCCC-cCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 189 VASKVFVGSLT-PDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 189 ~~~~l~V~nlp-~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
.+++|||+||| +.+++++|+++|++||.|.+|+++++.+|||||+|.+.++|++|++. +..+.|++|.|.+++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 35799999999 89999999999999999999999998899999999999999999986 889999999999987643
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.1e-14 Score=113.50 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCee-----ee
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRI-----CD 174 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~-----i~ 174 (363)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++|| +++..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5689999999999999999999999999999999765 89999999999999999 4688999988 66
Q ss_pred EecccCC
Q psy15045 175 VRIPEST 181 (363)
Q Consensus 175 v~~a~~~ 181 (363)
|..+.+.
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 6655443
No 333
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.51 E-value=2.8e-14 Score=107.14 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=67.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~ 264 (363)
.++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|++|+.. +..++|++|+|.++....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4789999999999999999999999 99999886 5699999999999999999996 779999999999987654
No 334
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.6e-15 Score=109.39 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=63.8
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
..++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|++. +..|+|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999999999998865 589999999999999999996 56788887776553
No 335
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=5.5e-15 Score=111.39 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.8
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
++|||+|||.++++++|+++|++||.|..|.+.++ ++|||||+|.+.+ |.+|+.. +..++|++|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999865 5899999999999 9999987 77899999999999886
Q ss_pred Ccc
Q psy15045 264 KKM 266 (363)
Q Consensus 264 ~~~ 266 (363)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 336
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=9.2e-15 Score=112.67 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=67.4
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
..++|||+|||+.+++++|+++|++||.|.. .++.+ ++|||||+|.+.++|++|++. +..|+|+.|.|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 4689999999999999999999999998877 33332 689999999999999999986 6789999999999988
Q ss_pred CCcc
Q psy15045 263 KKKM 266 (363)
Q Consensus 263 ~~~~ 266 (363)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=4.2e-14 Score=117.57 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=67.7
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-CCcEEEEEecCHHHHHHHHhc--CCeeCC--eEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-FREFAFVTFELDSVAKSLIGQ--HVNIKD--KKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-~~g~afV~F~~~~~A~~Ai~~--~~~~~g--~~l~V~~a~~~~ 264 (363)
..+|||+||++.+|+++|+++|++||.|.+|.|..+ +++||||+|.+.++|++|++. +..|.| ++|+|.|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 467899999999999999999999999999998744 578999999999999999997 778855 999999999864
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=7.3e-14 Score=111.38 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEec
Q psy15045 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~ 177 (363)
+...++|||+|| ++++++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|+ +++..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346889999996 69999999999999999999986 35899999999999999999 468899999999999
Q ss_pred ccCCCC
Q psy15045 178 PESTKI 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987743
No 339
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.6e-13 Score=106.48 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEEecCCC-CCceeEEEEEeCCHHHHHHHH--hcccccCCeee
Q psy15045 102 QNTDLVVLGIPW-----TFTDNDLKEYFEQFGTLEFANVKVDKNT-GRSKGFGFIRFSSHESALKAM--LKKHKIGNRIC 173 (363)
Q Consensus 102 ~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i 173 (363)
++++|+|.||.. +-++++|+++|++||+|.+|.|++++.+ +.++|||||+|.+.++|.+|+ +++..++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 678999999952 2378999999999999999999998754 689999999999999999999 57999999999
Q ss_pred eEecccCC
Q psy15045 174 DVRIPEST 181 (363)
Q Consensus 174 ~v~~a~~~ 181 (363)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99998653
No 340
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=115.63 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=68.2
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCe----EEEEecCC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAV----VDVLIPKP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i----~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a 260 (363)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+ ++|||||+|.+.++|++|+.. +..|+|+.|.|..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 4799999999999999999999999975 57877754 689999999999999999998 67999999999998
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
.+++..
T Consensus 103 ~~~e~~ 108 (123)
T 2dha_A 103 TAAEVQ 108 (123)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 776543
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=1.3e-13 Score=119.09 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=85.0
Q ss_pred CHHHHHHHHhcc----cccCCeeeeEecccCCCCCC------CCCCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEec
Q psy15045 154 SHESALKAMLKK----HKIGNRICDVRIPESTKIGT------EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223 (363)
Q Consensus 154 ~~~~a~~al~~~----~~~~g~~i~v~~a~~~~~~~------~~~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~ 223 (363)
+.+.+..|+... ..+.+....|......+... .....++|||+|||+++++++|+++|++||.|..|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 566777777432 24455545555442221111 11235899999999999999999999999999999998
Q ss_pred CC----CCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCCCcc
Q psy15045 224 KP----FREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 224 ~~----~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~~ 266 (363)
++ ++|||||+|++.++|.+|+.. +..|+|++|.|.++..-...
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAK 190 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC---
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHHHH
Confidence 64 689999999999999999987 77999999999998775544
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=1.1e-13 Score=103.32 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=64.4
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcC----C-------CeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEE
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYY----G-------AVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~----G-------~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~ 256 (363)
..++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.. +..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHHhcCCCEECCeEEE
Confidence 35899999999999999999999999 8 8999999877 99999999999999999943 7899999999
Q ss_pred EEE
Q psy15045 257 VME 259 (363)
Q Consensus 257 V~~ 259 (363)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-13 Score=106.99 Aligned_cols=76 Identities=29% Similarity=0.515 Sum_probs=66.5
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC--------CCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEc
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP--------FREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEA 260 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~--------~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a 260 (363)
..++|||+|||+.+++++|+++|++||.|. +.++.+ ++|||||+|.+.++|++|++..+.++|+.|.+..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS 85 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence 358999999999999999999999999999 777643 48999999999999999999877789999999876
Q ss_pred cCCCc
Q psy15045 261 TPKKK 265 (363)
Q Consensus 261 ~~~~~ 265 (363)
.+...
T Consensus 86 ~~~~~ 90 (114)
T 2dnl_A 86 PTIKD 90 (114)
T ss_dssp SSSCS
T ss_pred CCcCC
Confidence 65443
No 344
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-15 Score=118.64 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE--------EEecCC-----CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVD--------VLIPKP-----FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--------i~i~~~-----~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
...++|||+|||+.+++++|+++|++||.|.. |.++.+ ++|||||+|.+.++|++|+.. +..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34589999999999999999999999999998 777754 579999999999999999996 779999
Q ss_pred eEEEEEEccCCCcc
Q psy15045 253 KKVVVMEATPKKKM 266 (363)
Q Consensus 253 ~~l~V~~a~~~~~~ 266 (363)
++|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999886543
No 345
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-14 Score=115.59 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=67.1
Q ss_pred CcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEE-ecC----CCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccC
Q psy15045 189 VASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-IPK----PFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATP 262 (363)
Q Consensus 189 ~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~-i~~----~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 262 (363)
...+|||+|||+.+|+++|+++|++||.|..+. +.. .++|||||+|.+.++|.+|+.. +..|+|+.|.|.++.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 358999999999999999999999999987633 321 2589999999999999999997 6799999999999988
Q ss_pred CCc
Q psy15045 263 KKK 265 (363)
Q Consensus 263 ~~~ 265 (363)
+..
T Consensus 104 ~~~ 106 (124)
T 1wel_A 104 KGM 106 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=102.24 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=64.8
Q ss_pred Ccce-EEEcCCCcCCCHHH----HHHHhhcCC-CeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 189 VASK-VFVGSLTPDLTESD----LREHFEYYG-AVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 189 ~~~~-l~V~nlp~~~t~e~----L~~~F~~~G-~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
++.+ |||+|||+.+++++ |+++|++|| .|.+|. .|+|||+|.+.++|++|++. +..+.|++|+|.||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3445 99999999999988 558999995 999982 49999999999999999987 88999999999999
Q ss_pred cCCCccc
Q psy15045 261 TPKKKMN 267 (363)
Q Consensus 261 ~~~~~~~ 267 (363)
+.+...-
T Consensus 82 ~~~sd~~ 88 (96)
T 2diu_A 82 PKNRELC 88 (96)
T ss_dssp CCSCCCC
T ss_pred CCCccee
Confidence 9987654
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=1.5e-13 Score=109.56 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
...++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+.. +..|+|+.|.|.++.++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34689999996 69999999999999999999997 4599999999999999999976 7899999999999998765
Q ss_pred cc
Q psy15045 266 MN 267 (363)
Q Consensus 266 ~~ 267 (363)
..
T Consensus 114 ~~ 115 (121)
T 2bz2_A 114 LD 115 (121)
T ss_dssp --
T ss_pred CC
Confidence 43
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=113.78 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEE--------EEec--CCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVD--------VLIP--KPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~--------i~i~--~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
.++++|||+|||+.+|+++|+++|++||.|.. +.+. ..++|||||+|.+.++|.+|+.. +..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34589999999999999999999999999865 3333 23789999999999999999996 789999999
Q ss_pred EEEEccCCCccc
Q psy15045 256 VVMEATPKKKMN 267 (363)
Q Consensus 256 ~V~~a~~~~~~~ 267 (363)
.|.++.+...+.
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998765443
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=2.2e-13 Score=115.91 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEcc
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEAT 261 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~ 261 (363)
...++|||+|||+.+++++|+++|++||.|..|.|..+ ++|||||+|.+.++|++|+.. +..|+|+.|.|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34689999999999999999999999999999999865 689999999999999999995 779999999999998
Q ss_pred CCCc
Q psy15045 262 PKKK 265 (363)
Q Consensus 262 ~~~~ 265 (363)
+...
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 7543
No 350
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-12 Score=98.80 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeE
Q psy15045 103 NTDLVVLGIP-------WTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175 (363)
Q Consensus 103 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v 175 (363)
..+|-|...+ .++++++|+++|++||+|.+|.|+ +.++|||||+|.+.++|..|+.....+.++.|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 4566666554 468999999999999999999997 3669999999999999999998877788999999
Q ss_pred ecccCCCCCC
Q psy15045 176 RIPESTKIGT 185 (363)
Q Consensus 176 ~~a~~~~~~~ 185 (363)
.|+..+....
T Consensus 85 ~~a~~~~~~~ 94 (100)
T 2d9o_A 85 SWLEGQPQDA 94 (100)
T ss_dssp ECSSCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998775433
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=2.3e-13 Score=120.56 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccccc
Q psy15045 100 PVQNTDLVVLGIPWTF---------TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKI 168 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~ 168 (363)
....++|||+||+..+ ++++|+++|++||+|++|+|+.+ +|||||+|.+.++|+.|+ +++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3468899999999998 79999999999999999999865 899999999999999999 467777
Q ss_pred ------------CCeeeeEecccCCC
Q psy15045 169 ------------GNRICDVRIPESTK 182 (363)
Q Consensus 169 ------------~g~~i~v~~a~~~~ 182 (363)
.|+.|.|+||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998764
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=3.5e-13 Score=114.04 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeeeEecc
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICDVRIP 178 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~v~~a 178 (363)
...++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 467899999999999999999999999987655 4689999999999999999999994 688999999999999
Q ss_pred cCC
Q psy15045 179 EST 181 (363)
Q Consensus 179 ~~~ 181 (363)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 353
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=8.5e-13 Score=117.07 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccC-CeeeeEe
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFG-TLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIG-NRICDVR 176 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~-g~~i~v~ 176 (363)
.+.++|||+|||.++++++|+++|++|| .|..|+++.+ ++|||||+|.+.++|.+|+ +++..+. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3578999999999999999999999999 9999999653 2789999999999999999 4688899 9999999
Q ss_pred cccCC
Q psy15045 177 IPEST 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
|+.++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98764
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3e-12 Score=100.46 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccc
Q psy15045 100 PVQNTDLVVLGIPWTFT-----------DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKH 166 (363)
Q Consensus 100 ~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~ 166 (363)
+.++++|+|.||....+ +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|.+|+ +++.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45688999999944332 5899999999999999965 553 37999999999999999999 4688
Q ss_pred ccCCeeeeEecccCCCC
Q psy15045 167 KIGNRICDVRIPESTKI 183 (363)
Q Consensus 167 ~~~g~~i~v~~a~~~~~ 183 (363)
.++|+.|.|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999987643
No 355
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-12 Score=98.26 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=61.5
Q ss_pred cCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhcCCeeCCeEEEEEEccCCCcc
Q psy15045 200 PDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266 (363)
Q Consensus 200 ~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~ 266 (363)
..+++++|+++|++||.|..|.|++.++|||||+|.+.++|.+|+.....+.|++|.|.|+.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCCC
Confidence 5689999999999999999999998889999999999999999999877788999999999887644
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.9e-12 Score=99.87 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCcCCC-----------HHHHHHHhhcCCCeEEEEecC-CCCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 187 EPVASKVFVGSLTPDLT-----------ESDLREHFEYYGAVVDVLIPK-PFREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t-----------~e~L~~~F~~~G~i~~i~i~~-~~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
..++++|+|.||....+ +++|+++|++||.|..|.|.. .++|||||+|.+.++|.+|+.. +..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999954432 689999999999999997752 3799999999999999999986 789999
Q ss_pred eEEEEEEccCCCccc
Q psy15045 253 KKVVVMEATPKKKMN 267 (363)
Q Consensus 253 ~~l~V~~a~~~~~~~ 267 (363)
++|.|.++.++...+
T Consensus 92 r~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 92 RQITAQAWDGTTDYQ 106 (112)
T ss_dssp EECEEEECCSCCCSS
T ss_pred cEEEEEEeCCCCCcc
Confidence 999999998876543
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=5.7e-13 Score=117.98 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=74.4
Q ss_pred ccccCCeeeeEecccCCC-CCCCCCCcceEEEcCCCcCC---------CHHHHHHHhhcCCCeEEEEecCCCCcEEEEEe
Q psy15045 165 KHKIGNRICDVRIPESTK-IGTEEPVASKVFVGSLTPDL---------TESDLREHFEYYGAVVDVLIPKPFREFAFVTF 234 (363)
Q Consensus 165 ~~~~~g~~i~v~~a~~~~-~~~~~~~~~~l~V~nlp~~~---------t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F 234 (363)
...+.|+.....+..... ........++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-kG~AFV~F 186 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-KNCGFVKF 186 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-CCEEEEEe
Confidence 445556654443332221 11223446899999999998 79999999999999999999865 99999999
Q ss_pred cCHHHHHHHHhc--CCee------------CCeEEEEEEccCCCcc
Q psy15045 235 ELDSVAKSLIGQ--HVNI------------KDKKVVVMEATPKKKM 266 (363)
Q Consensus 235 ~~~~~A~~Ai~~--~~~~------------~g~~l~V~~a~~~~~~ 266 (363)
.+.++|+.|+++ +..| .|+.|.|.||.+....
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999999999987 6677 8999999999876543
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=2.8e-12 Score=99.34 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=65.8
Q ss_pred CcceEEEcCCCc-----CCCHHHHHHHhhcCCCeEEEEecCC------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 189 VASKVFVGSLTP-----DLTESDLREHFEYYGAVVDVLIPKP------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 189 ~~~~l~V~nlp~-----~~t~e~L~~~F~~~G~i~~i~i~~~------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
++++|+|.||.. +.++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.+|+.. +..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 2378999999999999999999853 589999999999999999987 789999999
Q ss_pred EEEEccCC
Q psy15045 256 VVMEATPK 263 (363)
Q Consensus 256 ~V~~a~~~ 263 (363)
.|.++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99999874
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1e-12 Score=103.67 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=62.1
Q ss_pred ceEEEcCC----CcCCCHHHHHHHhhcCCCeEEEEecCC-----CCcEEEEEecC----HHH----HHHHHh--c--CCe
Q psy15045 191 SKVFVGSL----TPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFEL----DSV----AKSLIG--Q--HVN 249 (363)
Q Consensus 191 ~~l~V~nl----p~~~t~e~L~~~F~~~G~i~~i~i~~~-----~~g~afV~F~~----~~~----A~~Ai~--~--~~~ 249 (363)
..|||+|| |+.+++++|+++|++||+|.++.++.| ++|||||+|.+ +++ |.+|+. . +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999876 68999999996 322 788877 3 779
Q ss_pred eCCeEEEEEEccC
Q psy15045 250 IKDKKVVVMEATP 262 (363)
Q Consensus 250 ~~g~~l~V~~a~~ 262 (363)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997543
No 360
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=3.5e-12 Score=115.37 Aligned_cols=75 Identities=29% Similarity=0.503 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 188 ~~~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
...++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+.. +..|+|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 34689999999999999999999999999999999866 89999999999999999985 78999999999998764
No 361
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=112.23 Aligned_cols=76 Identities=22% Similarity=0.244 Sum_probs=70.9
Q ss_pred cceEEEcCCCc-CCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCCCc
Q psy15045 190 ASKVFVGSLTP-DLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKK 265 (363)
Q Consensus 190 ~~~l~V~nlp~-~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~~~ 265 (363)
+++|||+|||+ .+++++|+++|++||.|..|.+.++.+|||||+|.+.++|.+|+.. +..++|+.|.|.++.+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 47999999999 9999999999999999999999998899999999999999999985 7899999999999987653
No 362
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=4.3e-12 Score=115.87 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCcCCCHHHHH----HHhhcCCCeEEEEecCC--CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEE
Q psy15045 187 EPVASKVFVGSLTPDLTESDLR----EHFEYYGAVVDVLIPKP--FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVM 258 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~~t~e~L~----~~F~~~G~i~~i~i~~~--~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~ 258 (363)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.++ ++|||||+|.+.++|.+|+.. +..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3456899999999999999977 89999999999999864 789999999999999999976 789999999999
Q ss_pred EccCCCc
Q psy15045 259 EATPKKK 265 (363)
Q Consensus 259 ~a~~~~~ 265 (363)
++..+..
T Consensus 86 ~a~~~~~ 92 (282)
T 3pgw_A 86 YAKTDSD 92 (282)
T ss_pred EeccCcc
Confidence 9977653
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=4.7e-12 Score=100.14 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=68.2
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHHhhcCCeeEEEEEecCC----CCCceeEEEEEeCCHHHHHHHH--hcccccCC
Q psy15045 102 QNTDLVVLGIP--WTF---TDNDLKEYFEQFGTLEFANVKVDKN----TGRSKGFGFIRFSSHESALKAM--LKKHKIGN 170 (363)
Q Consensus 102 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~a~~al--~~~~~~~g 170 (363)
+++.|++.|+- .++ -+++|++.|++||+|.+|.|++++. ++.++||+||+|.+.++|.+|+ +++..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 222 3689999999999999999999864 4678899999999999999999 57999999
Q ss_pred eeeeEecccC
Q psy15045 171 RICDVRIPES 180 (363)
Q Consensus 171 ~~i~v~~a~~ 180 (363)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=3.9e-12 Score=98.56 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=68.3
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEEecCCC--CCceeEEEEEeCCHHHHHHHH--hcccc
Q psy15045 102 QNTDLVVLGI--PWTFT--------DNDLKEYFEQFGTLEFANVKVDKNT--GRSKGFGFIRFSSHESALKAM--LKKHK 167 (363)
Q Consensus 102 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~--g~~~G~afV~f~~~~~a~~al--~~~~~ 167 (363)
+++.|.+.|+ |.++. +++|++.|++||+|.+|.|++++.+ +.++|||||+|.+.++|.+|+ +++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5778999998 44443 3689999999999999999988654 468999999999999999999 57999
Q ss_pred cCCeeeeEecccCC
Q psy15045 168 IGNRICDVRIPEST 181 (363)
Q Consensus 168 ~~g~~i~v~~a~~~ 181 (363)
++|+.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987543
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=1.3e-12 Score=101.21 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=61.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeee
Q psy15045 108 VLGIPWTFTDNDLKEYF------------EQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRIC 173 (363)
Q Consensus 108 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i 173 (363)
+.+||..+++++|++.| ++||+|.+|.|++++ ++.++|||||+|.+.++|.+|+ +++..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888888777766 999999999999885 5789999999999999999999 57899999999
Q ss_pred eEecc
Q psy15045 174 DVRIP 178 (363)
Q Consensus 174 ~v~~a 178 (363)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.27 E-value=1.2e-11 Score=95.77 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=65.5
Q ss_pred CcceEEEcCC--CcCCC--------HHHHHHHhhcCCCeEEEEecCC-------CCcEEEEEecCHHHHHHHHhc--CCe
Q psy15045 189 VASKVFVGSL--TPDLT--------ESDLREHFEYYGAVVDVLIPKP-------FREFAFVTFELDSVAKSLIGQ--HVN 249 (363)
Q Consensus 189 ~~~~l~V~nl--p~~~t--------~e~L~~~F~~~G~i~~i~i~~~-------~~g~afV~F~~~~~A~~Ai~~--~~~ 249 (363)
+++.|.|.|+ |..+. +++|+++|++||.|.+|.|+++ ++|+|||+|.+.++|.+|+.. +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4688999998 33443 3799999999999999999865 479999999999999999987 789
Q ss_pred eCCeEEEEEEccCCC
Q psy15045 250 IKDKKVVVMEATPKK 264 (363)
Q Consensus 250 ~~g~~l~V~~a~~~~ 264 (363)
++|+.|.|.++.+..
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999987643
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=8.4e-11 Score=109.56 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCCcceEEEcC--CCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCee---CCe--EEEE
Q psy15045 187 EPVASKVFVGS--LTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNI---KDK--KVVV 257 (363)
Q Consensus 187 ~~~~~~l~V~n--lp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~---~g~--~l~V 257 (363)
..++++|||+| |+..+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++. +..+ .|+ .|.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 45568999999 578999999999999999999999876 599999999999999999997 4444 244 6788
Q ss_pred EEccC
Q psy15045 258 MEATP 262 (363)
Q Consensus 258 ~~a~~ 262 (363)
.|+..
T Consensus 94 ~~~~~ 98 (345)
T 3tht_A 94 NFVEK 98 (345)
T ss_dssp EECSS
T ss_pred EEeec
Confidence 88753
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.3e-11 Score=95.48 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=57.4
Q ss_pred EcCCCcCCCHHHHHHHh------------hcCCCeEEEEecCC----CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEE
Q psy15045 195 VGSLTPDLTESDLREHF------------EYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVV 256 (363)
Q Consensus 195 V~nlp~~~t~e~L~~~F------------~~~G~i~~i~i~~~----~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~ 256 (363)
+.|||+.+++++|+++| ++||.|.+|.|+++ ++|||||+|.+.++|.+|+.. +..++|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777776666 99999999999876 589999999999999999987 7899999999
Q ss_pred EEEcc
Q psy15045 257 VMEAT 261 (363)
Q Consensus 257 V~~a~ 261 (363)
|.|+.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=5.4e-11 Score=94.00 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=64.5
Q ss_pred CcceEEEcCCCc--CC---CHHHHHHHhhcCCCeEEEEecCC---------CCcEEEEEecCHHHHHHHHhc--CCeeCC
Q psy15045 189 VASKVFVGSLTP--DL---TESDLREHFEYYGAVVDVLIPKP---------FREFAFVTFELDSVAKSLIGQ--HVNIKD 252 (363)
Q Consensus 189 ~~~~l~V~nlp~--~~---t~e~L~~~F~~~G~i~~i~i~~~---------~~g~afV~F~~~~~A~~Ai~~--~~~~~g 252 (363)
++++|+|.|+-. ++ .+++|+++|++||.|.+|.|+++ ++|++||+|.+.++|.+|+.. +..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457999999842 22 36999999999999999999865 248999999999999999998 789999
Q ss_pred eEEEEEEccCC
Q psy15045 253 KKVVVMEATPK 263 (363)
Q Consensus 253 ~~l~V~~a~~~ 263 (363)
+.|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998763
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=8.9e-11 Score=109.38 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=59.7
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--ccccc---CCe--
Q psy15045 101 VQNTDLVVLG--IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKI---GNR-- 171 (363)
Q Consensus 101 ~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~---~g~-- 171 (363)
.++.+|||+| |+..+||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|+. ++..+ .|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4678999999 578999999999999999999887743 47999999999999999994 56555 244
Q ss_pred eeeEeccc
Q psy15045 172 ICDVRIPE 179 (363)
Q Consensus 172 ~i~v~~a~ 179 (363)
.+.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 46666653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=1.9e-10 Score=90.23 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=65.1
Q ss_pred CcceEEEcCCCcCC----------CHHHHHHHhhcCCCeEEEEecCC-CCcEEEEEecCHHHHHHHHhc--CCeeCCeEE
Q psy15045 189 VASKVFVGSLTPDL----------TESDLREHFEYYGAVVDVLIPKP-FREFAFVTFELDSVAKSLIGQ--HVNIKDKKV 255 (363)
Q Consensus 189 ~~~~l~V~nlp~~~----------t~e~L~~~F~~~G~i~~i~i~~~-~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l 255 (363)
++++|.|.|+-..- .+++|+++|++||.|.+|.|.++ ++|+|||+|.+.++|.+|+.. +..|+|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45788898884322 24789999999999999999877 589999999999999999987 789999999
Q ss_pred EEEEccCCC
Q psy15045 256 VVMEATPKK 264 (363)
Q Consensus 256 ~V~~a~~~~ 264 (363)
.|.++....
T Consensus 86 ~v~~~~~~~ 94 (114)
T 3s6e_A 86 TAAYVPLPT 94 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEEEcHHH
Confidence 999987654
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=5.6e-10 Score=87.51 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCC--CCC--------CHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hccccc
Q psy15045 101 VQNTDLVVLGIP--WTF--------TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKI 168 (363)
Q Consensus 101 ~~~~~l~V~nLp--~~~--------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~ 168 (363)
.+++.|.+.|+= .+. -+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+ +++..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467789999983 221 134889999999999999986652 4899999999999999999 579999
Q ss_pred CCeeeeEecccC
Q psy15045 169 GNRICDVRIPES 180 (363)
Q Consensus 169 ~g~~i~v~~a~~ 180 (363)
+|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998753
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.6e-10 Score=87.83 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCcC-CCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecC-HHHHHHHHhc----CCeeCCeEEEEEEc
Q psy15045 187 EPVASKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL-DSVAKSLIGQ----HVNIKDKKVVVMEA 260 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~-~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~-~~~A~~Ai~~----~~~~~g~~l~V~~a 260 (363)
-+....|+|+||++. +++++|+++|++||+|.+|.+.++ ...|||+|.+ .++|..|+.+ +..|+|..+.+...
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 345789999999999 999999999999999999999987 4589999999 7888888876 56899999999887
Q ss_pred cCCCcc
Q psy15045 261 TPKKKM 266 (363)
Q Consensus 261 ~~~~~~ 266 (363)
....+.
T Consensus 94 ~GeeE~ 99 (121)
T 1owx_A 94 EGEVEK 99 (121)
T ss_dssp CHHHHH
T ss_pred CCHHHH
Confidence 765433
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.8e-09 Score=77.97 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=61.1
Q ss_pred CCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCee
Q psy15045 102 QNTDLVVLGIP----WTFTD----NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRI 172 (363)
Q Consensus 102 ~~~~l~V~nLp----~~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~~ 172 (363)
+..||+|.-++ .++-+ .+|.+.|.+||+|..++++.++ +||+|.+.++|.+|| +++..+.|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 56788888776 23333 5789999999999999999873 899999999999999 6789999999
Q ss_pred eeEecccCC
Q psy15045 173 CDVRIPEST 181 (363)
Q Consensus 173 i~v~~a~~~ 181 (363)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998764
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=6.7e-09 Score=76.65 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=61.6
Q ss_pred CCcceEEEcCCCc----CCCH----HHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEE
Q psy15045 188 PVASKVFVGSLTP----DLTE----SDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVM 258 (363)
Q Consensus 188 ~~~~~l~V~nlp~----~~t~----e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~ 258 (363)
|+..+|+|.-.+. ++.. .+|.+.|++||+|..+++..+ .+||+|.+.++|.+|++. +..++|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLSLNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGGGTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHhcCCeEeCCeEEEEE
Confidence 4567888877662 2333 779999999999999999966 499999999999999997 789999999999
Q ss_pred EccCC
Q psy15045 259 EATPK 263 (363)
Q Consensus 259 ~a~~~ 263 (363)
++.+.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98874
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.6e-09 Score=82.56 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCC-HHHHHHHHhc----ccccCCeeee
Q psy15045 101 VQNTDLVVLGIPWT-FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS-HESALKAMLK----KHKIGNRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~-~~~a~~al~~----~~~~~g~~i~ 174 (363)
..++-|+|+||+.+ ++.++|+++|++||+|..|.++++.. .|||.|.+ .++|..|+.. +..|++..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 36889999999999 99999999999999999999988743 59999999 7888888842 6678887777
Q ss_pred Eeccc
Q psy15045 175 VRIPE 179 (363)
Q Consensus 175 v~~a~ 179 (363)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76543
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=3.3e-08 Score=73.31 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCCe
Q psy15045 102 QNTDLVVLGIPWT-----FTD----NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNR 171 (363)
Q Consensus 102 ~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g~ 171 (363)
+..||+|.-++.. +-+ .+|.+.|.+||+|..++++.++ +||+|.+.++|.+|| +++..++|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 5778999988643 222 4688999999999999999883 999999999999999 689999999
Q ss_pred eeeEecccC
Q psy15045 172 ICDVRIPES 180 (363)
Q Consensus 172 ~i~v~~a~~ 180 (363)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998643
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=3.5e-08 Score=73.17 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=61.2
Q ss_pred CCCcceEEEcCCCcC-----CCH----HHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEE
Q psy15045 187 EPVASKVFVGSLTPD-----LTE----SDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256 (363)
Q Consensus 187 ~~~~~~l~V~nlp~~-----~t~----e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~ 256 (363)
-|+..+|+|.-++.+ +.. .+|.+.|++||+|..+++..+ -+||+|.+.++|.+||.. +..++|+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLDVDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence 356689999877643 222 668999999999999999977 399999999999999997 7899999999
Q ss_pred EEEccC
Q psy15045 257 VMEATP 262 (363)
Q Consensus 257 V~~a~~ 262 (363)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 987554
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=1.7e-07 Score=82.30 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEecCC----CCCceeEEEEEeCCHHHHHHHH--hcccccCCeeeeEecccC
Q psy15045 115 FTDNDLKEYFEQFGTLEFANVKVDKN----TGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180 (363)
Q Consensus 115 ~te~~L~~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~v~~a~~ 180 (363)
-.+++|++.|++||+|.++.|+++.. ++.++|++||+|.+.++|.+|+ +++..++||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45679999999999999999986543 4589999999999999999999 579999999999998753
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.6e-06 Score=65.06 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc-ccccCCeeee
Q psy15045 101 VQNTDLVVLGIPWTFTDNDLKEYFEQF-----GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICD 174 (363)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~-~~~~~g~~i~ 174 (363)
....+|.|.|||+.++++.|.-+|+.- |+|+.+.... +-|+|+|.+.+.|+..|.+ .|.+++..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 356799999999999999999999872 5788887643 4799999999999999977 9999999999
Q ss_pred EecccCCCCCCCCCCcceEEEcCCCcCCC
Q psy15045 175 VRIPESTKIGTEEPVASKVFVGSLTPDLT 203 (363)
Q Consensus 175 v~~a~~~~~~~~~~~~~~l~V~nlp~~~t 203 (363)
|....+.. ..+|++.+|++.++
T Consensus 78 V~P~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCC-------CCCCCCCSCCCCCC
T ss_pred EEcCCCCC-------cceEeeecCCCCCC
Confidence 97755442 26899999998875
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=5.7e-07 Score=78.82 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhcCCCeEEEEecCC---------CCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccCC
Q psy15045 202 LTESDLREHFEYYGAVVDVLIPKP---------FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 202 ~t~e~L~~~F~~~G~i~~i~i~~~---------~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~~ 263 (363)
-.+++|++.|++||.|.++.|+++ ++|++||+|.+.++|++|+.. +..++||.|.+.++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 467899999999999999999732 578999999999999999998 88999999999998753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=8.4e-06 Score=61.66 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=62.7
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcC-----CCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYY-----GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~-----G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a 260 (363)
.++|-+-|||+.+++..|+.+.+++ |.|+.|.+..| -+-|+|+|.+...|-+|.-+ +.+|.|++|+|.-.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 3788899999999999999999999 99999999988 56799999999999888765 88999999998643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=3.7e-05 Score=57.65 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=64.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcC-----CCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCCeEEEEEEccCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYY-----GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~-----G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 263 (363)
.++|.|.|||+.++++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|++.+++ .|.|++.+|.|.-..++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC
Confidence 4789999999999999999999872 5699998874 7899999999999999999 99999999999876665
Q ss_pred Ccc
Q psy15045 264 KKM 266 (363)
Q Consensus 264 ~~~ 266 (363)
...
T Consensus 85 ~~~ 87 (104)
T 2dhx_A 85 APA 87 (104)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.1e-05 Score=59.53 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH--hcccccCCeeee
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQF-----GTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICD 174 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al--~~~~~~~g~~i~ 174 (363)
..++|-+-|||..+++..|+.+.+++ |.|..|.+..| -+=|+|+|.+...|-+|. +++.+|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 57889999999999999999999999 99999999988 356999999999998887 579999999998
Q ss_pred Eec
Q psy15045 175 VRI 177 (363)
Q Consensus 175 v~~ 177 (363)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 854
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00057 Score=51.44 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred cceEEEcCCCcCC-C----HHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--CCeeCCeEEEEEEccC
Q psy15045 190 ASKVFVGSLTPDL-T----ESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATP 262 (363)
Q Consensus 190 ~~~l~V~nlp~~~-t----~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~~~~~g~~l~V~~a~~ 262 (363)
.++|+|.||+.++ . .+.++++|..|+.+......+..+ -..|.|.+.++|.+|... +..++|++++|.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3789999998865 2 267899999999988888876654 568999999999999987 6689999999999985
Q ss_pred CC
Q psy15045 263 KK 264 (363)
Q Consensus 263 ~~ 264 (363)
-.
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.23 E-value=0.0013 Score=48.68 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
..-++| ++|+++...+|.++|++||.| .|+.+-|- .|||.|.+++.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 344555 999999999999999999965 57777773 89999999999999885
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.0049 Score=47.62 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=60.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc-CCeeCC-eEEEEEEccCCC
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKD-KKVVVMEATPKK 264 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~-~~~~~g-~~l~V~~a~~~~ 264 (363)
...|.|-+.|+. ....+..+|++||+|.+.... ....+-.|+|.+..+|++|+.+ +..|+| ..|-|.....+.
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCHH
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCHH
Confidence 478899999998 467788899999999998874 3478999999999999999999 778874 677887765443
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.88 E-value=0.0026 Score=47.85 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh--cccccCCeeee
Q psy15045 102 QNTDLVVLGIPWTF-T----DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML--KKHKIGNRICD 174 (363)
Q Consensus 102 ~~~~l~V~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~--~~~~~~g~~i~ 174 (363)
-.++|+|.||+.++ . .+.++++|..|+++.+....+.- .=..|.|.+.++|.+|-. ++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998765 2 25789999999998888777552 246899999999999974 56789999999
Q ss_pred EecccCC
Q psy15045 175 VRIPEST 181 (363)
Q Consensus 175 v~~a~~~ 181 (363)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998754
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.48 E-value=0.0077 Score=46.52 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHH-hcccccCC-eeeeEecc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGN-RICDVRIP 178 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al-~~~~~~~g-~~i~v~~a 178 (363)
..+.|.|-+.|+.. ...|...|++||+|.+.... ++ ..+-.|.|.+..+|++|| +++..+++ -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 56789999999885 56778899999999987762 12 459999999999999999 56777775 55556553
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0078 Score=47.16 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=55.8
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEE-EEecC------------------CCCcEEEEEecCHHHHHHHHhc-CCee
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVD-VLIPK------------------PFREFAFVTFELDSVAKSLIGQ-HVNI 250 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~-i~i~~------------------~~~g~afV~F~~~~~A~~Ai~~-~~~~ 250 (363)
.-|.|-+.|++. ...+-++|++||.|.+ ..+.+ ....+..|+|++..+|.+|+.. +..|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 457777898764 4556688999999876 33321 0256889999999999999999 8899
Q ss_pred CCeEEEEEEccCC
Q psy15045 251 KDKKVVVMEATPK 263 (363)
Q Consensus 251 ~g~~l~V~~a~~~ 263 (363)
+|.-|-|....+.
T Consensus 87 ~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 87 NGVLLGVIPYTKD 99 (132)
T ss_dssp TTEECEEEECCHH
T ss_pred CcEEEEEEECCHH
Confidence 9998888887653
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.11 E-value=0.013 Score=43.32 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=43.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
...++| ++|+++...||.++|++||.| .|..+. ...|||.|.+.+.|..|+..
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE--TTEEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHh
Confidence 356777 999999999999999999954 344443 46899999999999988875
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.01 E-value=0.0032 Score=60.53 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=45.4
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
.+.|+|. .|..+++.+|.++|++||.|.++.+.++..-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 3789997 7889999999999999999999999988778999999999999988776
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0092 Score=44.26 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=43.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 105 DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 105 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
.||+-++|+++...+|.++|++||.| .|+.+-|- .|||.|.+++.|..|+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 34444999999999999999999954 67887773 79999999999999885
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.96 E-value=0.02 Score=42.11 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=45.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-------CCcEEEEEecCHHHHHHHHhc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-------FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-------~~g~afV~F~~~~~A~~Ai~~ 246 (363)
.+|.|++||+.+|++++.+.++....+........ .-.-|+|.|.+.+++......
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 47999999999999999999999988776655421 235699999999988887776
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.94 E-value=0.031 Score=41.13 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC--CceeEEEEEeCCHHHHHHHHh
Q psy15045 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG--RSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 104 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~al~ 163 (363)
++|.|++||+.+||+++.+.+..+.++.....+..+.+. ..-.-|+|.|.+.+++.....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 589999999999999999999998887766665543222 122569999999988877764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.63 E-value=0.012 Score=43.57 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=42.5
Q ss_pred ceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 191 ~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
..++| ++|+++...||.++|++||. ..|..+.| ..|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--CeEEEEecCHHHHHHHHHh
Confidence 45677 99999999999999999994 34555533 6899999999998888774
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.0063 Score=58.49 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=42.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHh
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~ 163 (363)
..++|||. .|..+++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 35789997 89999999999999999999998887653 2599999999999987763
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.31 E-value=0.089 Score=38.98 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=42.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCC-------CCcEEEEEecCHHHHHHHHhc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-------FREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~-------~~g~afV~F~~~~~A~~Ai~~ 246 (363)
+-+|.|+.||+.+||+++.+.++..-++........ .-.-|+|.|.+.++.....+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999888877655543333221 124689999999998887776
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.39 E-value=0.092 Score=41.08 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=52.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEec--------CC----CC-CceeEEEEEeCCHHHHHHHH-hcccc
Q psy15045 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEF-ANVKVD--------KN----TG-RSKGFGFIRFSSHESALKAM-LKKHK 167 (363)
Q Consensus 103 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~--------~~----~g-~~~G~afV~f~~~~~a~~al-~~~~~ 167 (363)
...|.|-+.|++.+ ..+.+.|++||.|.+ +.+.+. +. .. ....+-.|+|.+..+|.+|| .++..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45677888977655 456689999999876 211110 00 00 12468899999999999999 57999
Q ss_pred cCCeeeeEeccc
Q psy15045 168 IGNRICDVRIPE 179 (363)
Q Consensus 168 ~~g~~i~v~~a~ 179 (363)
++|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877776654
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.23 E-value=0.24 Score=36.68 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC-CC-ceeEEEEEeCCHHHHHHHHh
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT-GR-SKGFGFIRFSSHESALKAML 163 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~-~~G~afV~f~~~~~a~~al~ 163 (363)
.+-+|.|+.||+.+||+++.+.++.+=++.....+..+.+ +. .-.-|+|.|.+.++......
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4568999999999999998887776544432222211111 11 12458999999999887764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.29 E-value=3 Score=40.51 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=43.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhc
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~ 164 (363)
....++|+ +|..+...+|.++|+.||.+ +|+.+.+ -.|||.|.+.+.|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 34567776 99999999999999999964 5666554 3699999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.26 E-value=9.1 Score=37.14 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=42.8
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
...++|+ +|..+...+|.+.|+.||.| +|..+. ...|||.|.+.+.|..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHH
Confidence 4567776 89999999999999999954 555553 45799999999999887775
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.06 E-value=40 Score=24.06 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=55.0
Q ss_pred cceEEEcCCCcCCCHHHHHHHhhcCCCeEEEEecCCCCcEEEEEecCHHHHHHHHhc--C-------CeeCCeEEEEEEc
Q psy15045 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--H-------VNIKDKKVVVMEA 260 (363)
Q Consensus 190 ~~~l~V~nlp~~~t~e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~--~-------~~~~g~~l~V~~a 260 (363)
.+-|-|-|+|..+-..++--.....|---.|..+ .|.|.+.|.+.++..-|+++ . .++.|....|--.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvist 88 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIST 88 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeec
Confidence 3667788999998888877777777877788776 68999999999998888876 1 2667777766555
Q ss_pred cCCC
Q psy15045 261 TPKK 264 (363)
Q Consensus 261 ~~~~ 264 (363)
.|..
T Consensus 89 iped 92 (129)
T 4eyt_A 89 IPED 92 (129)
T ss_dssp CCHH
T ss_pred CCch
Confidence 5543
No 404
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=39.22 E-value=54 Score=22.70 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=39.6
Q ss_pred EEEEEeCCHHHHHHHHhcccccCC---eeeeEecccCCCCCCCCCCcceEEEcCCCcCCCHHHHHHHhhcC
Q psy15045 147 FGFIRFSSHESALKAMLKKHKIGN---RICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214 (363)
Q Consensus 147 ~afV~f~~~~~a~~al~~~~~~~g---~~i~v~~a~~~~~~~~~~~~~~l~V~nlp~~~t~e~L~~~F~~~ 214 (363)
|.++.|....++.+-+.....++. |.+.|+...++.- -.+|| |.++++++++....++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~Y-------E~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRY-------EVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEE-------EEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCce-------EEEEE--ECCCCCHHHHHHHHHHH
Confidence 889999877666666655555555 4555554443321 35777 67889999988887765
No 405
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=37.00 E-value=7.2 Score=36.00 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=8.6
Q ss_pred cCCCHHHHHHHhh
Q psy15045 200 PDLTESDLREHFE 212 (363)
Q Consensus 200 ~~~t~e~L~~~F~ 212 (363)
..+++++|++...
T Consensus 227 ~~vt~~~l~~i~~ 239 (358)
T 2pk2_A 227 ATVTLELLDELTH 239 (358)
T ss_dssp SSCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3567777776654
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.30 E-value=1.3e+02 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.2
Q ss_pred eEEEEecCCCCcEEEEEecCHHHHHHHHhc
Q psy15045 217 VVDVLIPKPFREFAFVTFELDSVAKSLIGQ 246 (363)
Q Consensus 217 i~~i~i~~~~~g~afV~F~~~~~A~~Ai~~ 246 (363)
|..+.++...+||.||+++..++...++..
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTT
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHC
Confidence 778888767899999999999998888877
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.55 E-value=1.4e+02 Score=24.23 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=35.0
Q ss_pred eEEEcCCCC---------CCCHHHHHHHH--hhcCCeeEEEEEecCCCCCceeEEEEEeCCHHH
Q psy15045 105 DLVVLGIPW---------TFTDNDLKEYF--EQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157 (363)
Q Consensus 105 ~l~V~nLp~---------~~te~~L~~~F--~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 157 (363)
++.|-|+|. ..+..+|++.| ..|.++. |+.+..+ .-+.|+|.|.|...-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 455667765 24567999977 8998865 5555553 3468999999987543
No 408
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=27.19 E-value=37 Score=17.94 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=4.8
Q ss_pred CCCCCCCChh
Q psy15045 329 NSNNATVSPD 338 (363)
Q Consensus 329 ~~~~~~~~~~ 338 (363)
...-..+.||
T Consensus 9 aashqrvtpd 18 (29)
T 1cn3_F 9 AASHQRVTPD 18 (29)
T ss_dssp TTCCCCCEEG
T ss_pred cccccccCch
Confidence 3344455554
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.37 E-value=20 Score=28.49 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCCeEEEEecCCCCcEEEEEec
Q psy15045 205 SDLREHFEYYGAVVDVLIPKPFREFAFVTFE 235 (363)
Q Consensus 205 e~L~~~F~~~G~i~~i~i~~~~~g~afV~F~ 235 (363)
+++.++|...|.|+... ..+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---CCCCeeEEeeC
Confidence 45666777677666544 45899999976
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.75 E-value=2.3e+02 Score=20.09 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCceeEEEEEeCCHHHHHHHHhcccccCCeeeeEec
Q psy15045 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRI 177 (363)
Q Consensus 102 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~a~~al~~~~~~~g~~i~v~~ 177 (363)
..+-|-|-|+|..+-..++.-.....|---.|..+ -|-|.+.|.+.++...|+.....-+...+.++.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 35667788999999999988888888865556554 357999999999999998543333444455443
Done!