Your job contains 1 sequence.
>psy15045
MQKIMAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESRYRAVKLAD
GHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDL
KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES
TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVA
KSLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYY
DNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSPDVLQAVVSKAVSEVLNVQKAIDE
SKY
The BLAST search returned 20 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15045
(363 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein... 603 9.3e-59 1
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein... 595 6.6e-58 1
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein... 594 8.4e-58 1
UNIPROTKB|B1AKP7 - symbol:TARDBP "TAR DNA-binding protein... 593 1.1e-57 1
UNIPROTKB|G3V162 - symbol:TARDBP "TAR DNA-binding protein... 593 1.1e-57 1
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein... 591 1.7e-57 1
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein... 587 4.6e-57 1
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"... 586 5.9e-57 1
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p... 585 7.5e-57 1
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein... 581 2.0e-56 1
RGD|1310906 - symbol:Tardbp "TAR DNA binding protein" spe... 578 4.2e-56 1
UNIPROTKB|D4A9S4 - symbol:Tardbp "Protein Tardbp" species... 564 1.3e-54 1
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin... 561 2.6e-54 1
ZFIN|ZDB-GENE-031030-1 - symbol:tardbpl "TAR DNA binding ... 556 8.9e-54 1
FB|FBgn0025790 - symbol:TBPH "TAR DNA-binding protein-43 ... 537 9.2e-52 1
FB|FBgn0036496 - symbol:CG7804 species:7227 "Drosophila m... 506 1.8e-48 1
UNIPROTKB|I3LE28 - symbol:I3LE28 "Uncharacterized protein... 434 7.5e-41 1
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p... 428 3.3e-40 1
UNIPROTKB|K7EJM5 - symbol:TARDBP "TAR DNA-binding protein... 427 4.2e-40 1
WB|WBGene00006514 - symbol:tdp-1 species:6239 "Caenorhabd... 275 4.6e-35 2
UNIPROTKB|Q20414 - symbol:tdp-1 "Protein TDP-1, isoform a... 272 1.0e-34 2
UNIPROTKB|B4DJ45 - symbol:TARDBP "cDNA FLJ58188, highly s... 340 6.9e-31 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 267 3.9e-26 2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 291 1.1e-25 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 240 9.1e-25 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 275 5.3e-24 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 270 1.8e-23 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 269 2.3e-23 1
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 269 2.3e-23 1
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 269 2.3e-23 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 269 2.3e-23 1
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 266 4.8e-23 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 266 4.8e-23 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 266 4.8e-23 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 263 1.0e-22 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 262 1.3e-22 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 261 1.6e-22 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 260 2.1e-22 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 260 2.1e-22 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 259 2.6e-22 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 259 2.6e-22 1
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 259 2.6e-22 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 259 2.6e-22 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 259 2.6e-22 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 259 2.6e-22 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 258 3.4e-22 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 258 3.4e-22 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 258 3.4e-22 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 265 3.6e-22 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 257 4.3e-22 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 255 7.0e-22 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 254 9.0e-22 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 253 1.1e-21 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 252 1.5e-21 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 252 1.5e-21 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 249 3.0e-21 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 247 4.9e-21 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 246 6.3e-21 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 244 1.0e-20 1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 244 1.0e-20 1
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 238 1.2e-20 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 243 1.3e-20 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 242 1.7e-20 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 242 1.7e-20 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 239 1.7e-20 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 240 2.7e-20 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 239 3.5e-20 1
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 239 3.5e-20 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 238 4.4e-20 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 238 4.4e-20 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 238 4.4e-20 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 238 4.4e-20 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 238 4.4e-20 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 238 4.4e-20 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 238 4.4e-20 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 237 5.7e-20 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 236 7.2e-20 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 236 7.2e-20 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 245 1.3e-19 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 245 1.3e-19 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 245 1.3e-19 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 246 1.8e-19 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 240 1.9e-19 1
UNIPROTKB|K7EN94 - symbol:TARDBP "TAR DNA-binding protein... 232 1.9e-19 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 232 1.9e-19 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 232 1.9e-19 1
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 232 1.9e-19 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 238 2.1e-19 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 244 2.1e-19 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 230 3.1e-19 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 237 3.9e-19 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 229 4.1e-19 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 233 5.2e-19 1
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 228 5.3e-19 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 228 5.3e-19 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 227 7.2e-19 1
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 242 7.3e-19 1
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 242 7.3e-19 1
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 242 7.3e-19 1
WARNING: Descriptions of 716 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 136/315 (43%), Positives = 180/315 (57%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +
Sbjct: 181 -KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGA 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGSNMGGGMN 312
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 135/315 (42%), Positives = 179/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPGGFGNQGGFGNSR--GGGG 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGSNMGGGMN 312
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 136/315 (43%), Positives = 179/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGA 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGSNMGGGMN 312
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 125/264 (47%), Positives = 166/264 (62%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +
Sbjct: 181 -KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPK 263
A+SL G+ + IK V + A PK
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 125/264 (47%), Positives = 166/264 (62%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +
Sbjct: 181 -KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPK 263
A+SL G+ + IK V + A PK
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 135/315 (42%), Positives = 179/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
K+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGA 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGSNMGGGMN 312
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 134/315 (42%), Positives = 178/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPGGFGNQGGFGNSR--GGGG 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGSNMGGGMN 312
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 134/315 (42%), Positives = 179/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
K+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGA 297
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 298 GLGNNQGGNMGGGMN 312
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 136/315 (43%), Positives = 179/315 (56%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT+ +E +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTDENDEP-IEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 59
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 60 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 119
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 120 KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 179
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 180 -KQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 238
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGN 297
A+SL G+ + IK V + A PK + NSR GGG
Sbjct: 239 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGA 296
Query: 298 GYYDNRQQQQGGYNN 312
G +N+ GG N
Sbjct: 297 GLGNNQGSNMGGGMN 311
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 124/264 (46%), Positives = 165/264 (62%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
K+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +LR+ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPK 263
A+SL G+ + IK V + A PK
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPK 263
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 123/264 (46%), Positives = 165/264 (62%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
K+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKV 239
Query: 240 AKSLIGQHVNIKDKKVVVMEATPK 263
A+SL G+ + IK V + A PK
Sbjct: 240 AQSLCGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 119/252 (47%), Positives = 160/252 (63%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
K+YF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
K +EP+ S KVFVG T D+T +L++ F YG VVDV IPKPFR FAFVTF D V
Sbjct: 181 -KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKV 239
Query: 240 AKSLIGQHVNIK 251
A+SL G+ + IK
Sbjct: 240 AQSLCGEDLIIK 251
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 130/318 (40%), Positives = 170/318 (53%)
Query: 5 MAQ-YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADG 61
MA+ YI V E+ MEIPSEDDGT+LLST+ AQ+P A GL+++ V R V+L DG
Sbjct: 1 MAEMYIRVAEEENEEPMEIPSEDDGTVLLSTVSAQFPGACGLRFRSPVSQCMRGVRLVDG 60
Query: 62 HLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNS-------GPVQNTDLVVLGIPWT 114
L+AP +GW + VY + + K D S G + +DL+VLG+PW
Sbjct: 61 ILHAPENGWGNLVYVVNYPKETVLPDNKRKMDEIDASSATKIKRGDQKTSDLIVLGLPWK 120
Query: 115 FTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICD 174
++ DLK+YF FG + VK D TG SKGFGF+RF E+ K M ++H I R CD
Sbjct: 121 TSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQRHMIDGRWCD 180
Query: 175 VRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVT 233
++P S K G +EP+ S KVFVG T D+T +LR+ F YG V DV IPKPFR FAFVT
Sbjct: 181 CKLPNS-KQGIDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVT 239
Query: 234 FELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQY 293
F D VA +L G+ + IK V + A PK +
Sbjct: 240 FADDQVAAALCGEDLIIKGVSVHISNAEPKHNNTRQMMERAGRFGNGFGGQGFAGSRSNM 299
Query: 294 GGGNGYYDNRQQQQGGYN 311
GGG G + G +N
Sbjct: 300 GGGGGGSSSSLGNFGNFN 317
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 118/265 (44%), Positives = 160/265 (60%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGHLYA 65
YI V + E+ MEIPSE+DGT+LLST+ AQ+P A GL+Y+ V R V+L +G L+A
Sbjct: 5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHA 64
Query: 66 PLDGWQDRVYYCTF--DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEY 123
P W + VY + D + + G + +DL+VLG+PW T+ DLK+Y
Sbjct: 65 PEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDY 124
Query: 124 FEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPEST-- 181
F FG + VK D +G SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 125 FGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYF 184
Query: 182 --KIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238
+ G +EP+ S KVFVG T D+T +LR+ F YG V DV IPKPFR FAFVTF D
Sbjct: 185 LEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQ 244
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPK 263
VA+SL G+ + IK V + A PK
Sbjct: 245 VAQSLCGEDLIIKGTSVHISNAEPK 269
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 118/338 (34%), Positives = 182/338 (53%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
++ V+ ++ +++P+E+DGT+LLSTLQAQ+P + GLKY+ ++++ R V+ +G L+
Sbjct: 3 FVQVSEEEGDEPIQLPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFP 62
Query: 66 PL--DGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQN----TDLVVLGIPWTFTDND 119
P GW + Y+C F + + + + ++ TDL+VLG+PW T+
Sbjct: 63 PSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEES 122
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPE 179
L+EYFE +G + A +K D +G+SKGFGF+RF S+++ ++ + +H I R C+V++P
Sbjct: 123 LREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPN 182
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSV 239
S +G + P KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF V
Sbjct: 183 SKGMGHQVPC--KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDV 240
Query: 240 AKSLIGQHVNIKDKKVVVMEATPK----KKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGG 295
A+SL G+ IK V V A PK + P N G
Sbjct: 241 AQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMN-PG 299
Query: 296 GNGYY-DNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
NG++ N Q G N N+++ G G NN
Sbjct: 300 RNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNN 337
Score = 182 (69.1 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 54/152 (35%), Positives = 67/152 (44%)
Query: 184 GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSL 243
G V KVFVG T D+ DLRE+F +G V DV IP+PFR F+FVTF VA+SL
Sbjct: 185 GMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSL 244
Query: 244 IGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNR 303
G+ IK V V A PK + NS G + Y+
Sbjct: 245 CGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNY-----------NSANSFGMHSYHPQG 293
Query: 304 QQQQGGYNNKRRRNDYDDWHHGNGGNSNNATV 335
G N R N+ H+ +GG NA V
Sbjct: 294 NHMNPGRNGHHRGNNQ---HNAHGGE--NAIV 320
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 108/268 (40%), Positives = 167/268 (62%)
Query: 8 YIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK-VESR-YRAVKLADGHLYA 65
+++V+ ++ +E+P+E+DGT+LLSTLQAQ+P + GL+Y+ V+++ R V+ +G LY+
Sbjct: 3 FVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAVRGVRSNEGRLYS 62
Query: 66 PLD--GWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNT-------DLVVLGIPWTFT 116
P + GW + Y+C F + QS+ + +++ + T DL+VLG+ + T
Sbjct: 63 PSEETGWGEYHYFCVFP---KKNKRQSEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTT 119
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVR 176
+ DL+EYFE +G + A +K D +G SKGFGF+RF S++ + + K+H I R C+V+
Sbjct: 120 EQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVK 179
Query: 177 IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFEL 236
+P S +G +EP KVFVG T D+ DLRE+F +G V+DV IPKPFR F+FVTF L
Sbjct: 180 VPASRGMGNQEP--GKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTF-L 236
Query: 237 DS-VAKSLIGQHVNIKDKKVVVMEATPK 263
D V + + G+ IK V V A K
Sbjct: 237 DPYVPRVVCGEKHIIKGVSVHVSTADKK 264
>UNIPROTKB|I3LE28 [details] [associations]
symbol:I3LE28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 EMBL:FP236768
Ensembl:ENSSSCT00000024840 Uniprot:I3LE28
Length = 400
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 101/262 (38%), Positives = 141/262 (53%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYKVESRYRAVKLADGHLY 64
M++YI VT + ++ +E PSEDDGT+LLST+ AQ+P A GL+ + V
Sbjct: 1 MSEYIRVTKDENDEPIETPSEDDGTVLLSTVTAQFPEACGLRCR-----NPVSAGRRKSA 55
Query: 65 APLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDLKE 122
P W + VY + ++ S VQ T DL+VL +PW T+ LKE
Sbjct: 56 CPDADWGNLVYVVNYPKDNKRKMDETDASSVVKVKRAVQKTSDLIVLDLPWKTTEQGLKE 115
Query: 123 YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTK 182
YF FG + V D T SKGFGF F +E+ +K M ++H I + CD +P S K
Sbjct: 116 YFSTFGEVLMVQVIKDIKTSHSKGFGFFHFMEYETQVKVMSQRHMIDGQGCDC-LPNS-K 173
Query: 183 IGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAK 241
+EP+ S+ VFVG T D+T + ++ F Y V + IPKPFR FAFV F D +A
Sbjct: 174 QSPDEPLRSRRVFVGHCTEDMTADESQQFFCQYREVAGIFIPKPFRAFAFVIFADDQLAL 233
Query: 242 SLIGQHVNIKDKKVVVMEATPK 263
SL G+ +NIK ++ + A PK
Sbjct: 234 SLCGEDLNIKGNRIPISNAKPK 255
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 103/237 (43%), Positives = 132/237 (55%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
D + SSA + KR+ VQ T DL+VLG+PW T+ DLKEYF FG + VK D
Sbjct: 19 DETDASSAVKVKRA-------VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD 71
Query: 139 KNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KVFVGS 197
TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S K +EP+ S KVFVG
Sbjct: 72 IKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-KQSPDEPLRSRKVFVGR 130
Query: 198 LTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVV 257
T D+T +L++ F YG VVDV IPKPFR FAFVTF D VA+SL G+ + IK V +
Sbjct: 131 CTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVHI 190
Query: 258 MEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGNGYYDNRQQQQGGYNN 312
A PK + NSR GGG G +N+ GG N
Sbjct: 191 SNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGAGLGNNQGSNMGGGMN 245
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 91/202 (45%), Positives = 124/202 (61%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDN-SGPVQNT-DLVVLGIPWTFTDNDL 120
L+AP GW + VY + ++ S VQ T DL+VLG+PW T+ DL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPES 180
KEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S
Sbjct: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 TKIGTEEPVAS-KVFVGSLTPD 201
K +EP+ S KVFVG T D
Sbjct: 181 -KQSQDEPLRSRKVFVGRCTED 201
>WB|WBGene00006514 [details] [associations]
symbol:tdp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z49910 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 RefSeq:NP_001254189.1
ProteinModelPortal:D0VWM8 SMR:D0VWM8 STRING:D0VWM8 PaxDb:D0VWM8
EnsemblMetazoa:F44G4.4c GeneID:174436 KEGG:cel:CELE_F44G4.4
CTD:174436 WormBase:F44G4.4c HOGENOM:HOG000016692 OMA:PSISRIF
ArrayExpress:D0VWM8 Uniprot:D0VWM8
Length = 414
Score = 275 (101.9 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
Identities = 69/194 (35%), Positives = 104/194 (53%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
G + KR+ +S PV DL+VLG+ + TD ++YFE GT+ F +K K+ G
Sbjct: 155 GRDGRSGRKRAVERDSQPV---DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIK-RKSDG 210
Query: 143 RSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEE--PVASKVFVGSLT 199
SKGFGF+R SS K + + +H I R CDV++P+ + ++ P S++FVG LT
Sbjct: 211 NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRSLQDKQGRPSISRIFVGRLT 270
Query: 200 PDLTESDLREHF-----EYY--GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIK 251
+ E LR+ F Y V DV IPKPFR FAFVT A+ ++ + + +
Sbjct: 271 DKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVN 330
Query: 252 DKKVVVMEATPKKK 265
V + A P+++
Sbjct: 331 GLSVGLSIAQPREE 344
Score = 122 (48.0 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL-ADG-H 62
++I V + ++ +E+P+ D G +L++TLQA +P A GLKYK RAV++ G
Sbjct: 46 EFITVQDPNGDEPIELPTVD-GVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 63 LYAPLDGWQDRVYY 76
L AP DGW+++ ++
Sbjct: 105 LIAPADGWENKTFF 118
>UNIPROTKB|Q20414 [details] [associations]
symbol:tdp-1 "Protein TDP-1, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:Z49910 GeneTree:ENSGT00570000079202
GeneID:174436 KEGG:cel:CELE_F44G4.4 CTD:174436 HOGENOM:HOG000016692
PIR:T22207 RefSeq:NP_001022166.1 ProteinModelPortal:Q20414
SMR:Q20414 DIP:DIP-26310N IntAct:Q20414 MINT:MINT-1075238
STRING:Q20414 PRIDE:Q20414 EnsemblMetazoa:F44G4.4a UCSC:F44G4.4a
WormBase:F44G4.4a InParanoid:Q20414 NextBio:884032
ArrayExpress:Q20414 Uniprot:Q20414
Length = 411
Score = 272 (100.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/193 (36%), Positives = 104/193 (53%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
G + KR+ +S PV DL+VLG+ + TD ++YFE GT+ F +K K+ G
Sbjct: 155 GRDGRSGRKRAVERDSQPV---DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIK-RKSDG 210
Query: 143 RSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPEST-KIGTEEPVASKVFVGSLTP 200
SKGFGF+R SS K + + +H I R CDV++P+ K G P S++FVG LT
Sbjct: 211 NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQG--RPSISRIFVGRLTD 268
Query: 201 DLTESDLREHF----EYY---GAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ-HVNIKD 252
+ E LR+ F + Y V DV IPKPFR FAFVT A+ ++ + + +
Sbjct: 269 KVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNG 328
Query: 253 KKVVVMEATPKKK 265
V + A P+++
Sbjct: 329 LSVGLSIAQPREE 341
Score = 122 (48.0 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 7 QYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKL-ADG-H 62
++I V + ++ +E+P+ D G +L++TLQA +P A GLKYK RAV++ G
Sbjct: 46 EFITVQDPNGDEPIELPTVD-GVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 63 LYAPLDGWQDRVYY 76
L AP DGW+++ ++
Sbjct: 105 LIAPADGWENKTFF 118
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 79/181 (43%), Positives = 101/181 (55%)
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS-KV 193
VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD ++P S K +EP+ S KV
Sbjct: 19 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS-KQSQDEPLRSRKV 77
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDK 253
FVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +A+SL G+ + IK
Sbjct: 78 FVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGI 137
Query: 254 KVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSP--MSNSRQYGGGNGYYDNRQQQQGGYN 311
V + A PK + NSR GGG G +N+ GG
Sbjct: 138 SVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSR--GGGAGLGNNQGSNMGGGM 195
Query: 312 N 312
N
Sbjct: 196 N 196
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 267 (99.0 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 63/190 (33%), Positives = 100/190 (52%)
Query: 85 SSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
S A +S + + P D + + G+ W TD+ L++YFEQFG + V D TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL 202
RS+GFGF+ F + + + M K+H + +I D P+ E+ +K+FVG + D
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID---PKRAIPREEQEKTAKMFVGGVPGDC 258
Query: 203 TESDLREHFEYYGAVVD--VLIPKPF---REFAFVTFELDSVAKSLIGQ-HVNIKDKKVV 256
TE + R F +G V+D +++ K R F FVT+E +S ++ + Q ++ I K V
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 257 VMEATPKKKM 266
V ATPK +
Sbjct: 319 VKRATPKASL 328
Score = 53 (23.7 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 286 PMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNS 330
P S S G G Y R GG N +R R D G GGN+
Sbjct: 425 PFSPSMPSGSSRGGYHGRNP--GGPNRQRYRGRRD----GRGGNT 463
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 316 RNDYDDWHHGNGGNSN 331
R+ +D HG GN+N
Sbjct: 329 RDSHDRHQHGYHGNAN 344
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 65/167 (38%), Positives = 97/167 (58%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
LVVLGIPW + LK+Y +FG LE V D++TGRS+GFG++ F+S E A A+ +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 166 HKIGNRICDVRIPESTKIGTEEPV--ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP 223
H +GNRI +V++ + K +P +++FV + ++ESD R HFE YG + D+ +P
Sbjct: 65 HFLGNRILEVKVA-TPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 224 KPF-----REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
K + R F+TF DSV + H ++ V V ATPK+
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDLMEDTH-DLGGTTVAVDRATPKE 169
Score = 113 (44.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-PFRE----FAFVTFELDSV 239
T + +K+FVG L + + DLR++F +G + D IPK P R F FVTF + V
Sbjct: 234 TTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGV 293
Query: 240 AKSLIGQHVNIKDKKVVVMEATP 262
A + + I ++V + ATP
Sbjct: 294 ADRVARRSHEICGQEVAIDSATP 316
Score = 100 (40.3 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T + V IP + +++D + +FE++G + + D N+ + +G GFI FSS +S M
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 164 KKHKIG 169
H +G
Sbjct: 151 DTHDLG 156
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 240 (89.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 67/188 (35%), Positives = 101/188 (53%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK + P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSASPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ +K V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
Query: 259 EATPKKKM 266
+A PK++M
Sbjct: 179 KALPKQEM 186
Score = 57 (25.1 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 289 NSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY 319
+S YGGG G Y + Q QGGY + Y
Sbjct: 285 SSGPYGGG-GQYFAKPQNQGGYGVSSSSSSY 314
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 87/269 (32%), Positives = 125/269 (46%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
D G A SK N + V G+ W T DLK+YF +FG + +K+D
Sbjct: 32 DNGGQGEAEGSKIDASKNEE--DEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDP 89
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
TGRS+GFGF+ F ES K + +K HK+ ++ D + ++ K T+EPV K+FVG L
Sbjct: 90 LTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMK--TKEPV-KKIFVGGL 146
Query: 199 TPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHVNIKD 252
+PD E +RE+F+ YG V + +P R F F+TF E + V K + ++ NI
Sbjct: 147 SPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGL 206
Query: 253 KKVVVMEATPKKKMXXXXX--XXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQG-- 308
K V A K++ P N Q G GN Y++ G
Sbjct: 207 SKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQNWNQ-GYGN-YWNQGYGNYGNY 264
Query: 309 GYNNKRRRN----DYDDW--HHGNGGNSN 331
GYNN+ DY + ++G G SN
Sbjct: 265 GYNNQGYGGYGGYDYSGYNNYYGYGDYSN 293
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 82/250 (32%), Positives = 119/250 (47%)
Query: 96 DNSGPV-QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
D S P+ + + V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F
Sbjct: 55 DISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKD 114
Query: 155 HESALKAML-KKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
ES K + K+H++ R+ D P+ ++P+ K+FVG L P+ E +RE+FE
Sbjct: 115 AESVDKVLEHKEHRLDGRLID---PKKAMAMKKDPI-KKIFVGGLNPEAGEDQIREYFET 170
Query: 214 YGAVVDVLIPK-PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK--K 265
+G + + +P P R F F+TF E D V K L + N+ K + A PK+ +
Sbjct: 171 FGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPKEVYQ 230
Query: 266 MXXXXXXXXXXXXXXXXXXSPMSNSRQ-Y-----GGGN-GYYDNRQQQQGGYNNKRRRND 318
N Q Y G GN GY QQ GGY N D
Sbjct: 231 QQYGGRGGSFGGRGGRGGKGQGQNWNQGYNYWNQGYGNQGYGGYGQQGYGGYGNY----D 286
Query: 319 YDDW-HHGNG 327
Y + ++G G
Sbjct: 287 YSGYGYYGYG 296
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 84/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P +S Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 245
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 246 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNY 305
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 306 GYNSQGYGGYGGY----DYTGYNNYYGYGDYSN 334
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 84/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P +S Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 245
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 246 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNY 305
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 306 GYNSQGYGGYGGY----DYTGYNNYYGYGDYSN 334
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 84/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P +S Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 245
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 246 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNY 305
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 306 GYNSQGYGGYGGY----DYTGYNNYYGYGDYSN 334
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 80/263 (30%), Positives = 123/263 (46%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
+ G+ S + N+ Q D + + G+ W + DL +Y +FG + +K
Sbjct: 4 EEQGDFSTDEFPEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKT 63
Query: 138 DKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVG 196
D TGRS+GFGF+ F ES + + L +HK+ ++ D + ++ K G E P KVFVG
Sbjct: 64 DPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIK-GKEPP--KKVFVG 120
Query: 197 SLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDS-VAKSLIGQHVNI 250
L+PD+TE LRE+F YG + + +P R F FVTF L+ V K L ++ I
Sbjct: 121 GLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQI 180
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGY 310
K + A PK+ + R +GGG G + R + G+
Sbjct: 181 GSGKCEIKVAQPKE-----------------VYRQQQNRDRGFGGGRGGFRGRGGRGQGF 223
Query: 311 NNKRRRNDYDDWHHGNG-GNSNN 332
N + N+Y ++G G GN N
Sbjct: 224 N--QGYNNYYGQNYGGGYGNGYN 244
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 83/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P ++ Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 245
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 246 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNY 305
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 306 GYNSQGYGGYGGY----DYTGYNNYYGYGDYSN 334
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 83/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P ++ Q + + + G+ W T DLK+YF +FG + +
Sbjct: 67 DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTL 126
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 127 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 183
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 184 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 243
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 244 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGSY 303
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 304 GYNSQGYGGYGGY----DYTGYNSYYGYGDYSN 332
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 83/273 (30%), Positives = 124/273 (45%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P ++ Q + + + G+ W T DLK+YF +FG + +
Sbjct: 67 DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTL 126
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 127 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 183
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 184 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 243
Query: 249 NIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGYY 300
N+ K + A K++ P N S + G G Y
Sbjct: 244 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGSY 303
Query: 301 DNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Q GGY DY + ++G G SN
Sbjct: 304 GYNSQGYGGYGGY----DYTGYNSYYGYGDYSN 332
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 83/274 (30%), Positives = 128/274 (46%)
Query: 78 TFDASGNSS--ATQSKRSYPDNSGPVQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFAN 134
T ASG + + +S+ + D S ++ + +G + W T DLK+YF +FG +
Sbjct: 16 TAAASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 75
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
+K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+
Sbjct: 76 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKI 132
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQH 247
FVG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 133 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 192
Query: 248 VNIKDKKVVVMEATPKKKMXXXX---XXXXXXXXXXXXXXSPMSN-----SRQYGGGNGY 299
N+ K + A K++ P N S + G G
Sbjct: 193 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN 252
Query: 300 YDNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
Y Q GGY DY + ++G G SN
Sbjct: 253 YGYNSQGYGGYGGY----DYTGYNNYYGYGDYSN 282
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 76/239 (31%), Positives = 112/239 (46%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 82 GLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 141
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 142 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 198
Query: 224 KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXX---XXXXXXXXX 279
R F F+TF E + V K + ++ N+ K + A K++
Sbjct: 199 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA 258
Query: 280 XXXXXSPMSN-----SRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDW--HHGNGGNSN 331
P N S + G G Y Q GGY DY + ++G G SN
Sbjct: 259 RGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQGYGGYGGY----DYTGYNSYYGYGDYSN 313
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 68/197 (34%), Positives = 104/197 (52%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P +S Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 245
Query: 249 NIKDKKVVVMEATPKKK 265
N+ K + A K++
Sbjct: 246 NVGLSKCEIKVAMSKEQ 262
Score = 112 (44.5 bits), Expect = 0.00089, P = 0.00089
Identities = 41/145 (28%), Positives = 65/145 (44%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD + P R F FV
Sbjct: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK-KMXXXXXXXXXXXXXXXXXXSPMSNS 290
F E +SV K ++ Q + + KV+ PK+ K +P
Sbjct: 144 LFKESESVDK-VMDQKEHKLNGKVI----DPKRAKAMKTKEPVKKIFVGGLSPDTPEEKI 198
Query: 291 RQYGGGNGYYDNRQQQQGGYNNKRR 315
R+Y GG G ++ + NKRR
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRR 223
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 73/233 (31%), Positives = 109/233 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 76 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 135
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 136 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 191
Query: 224 KPF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK---KMXXXXXXXXX 275
P R F F+TF E D V K L + + K + A PK+ +
Sbjct: 192 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN 251
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDW-HHGNG 327
S S G GN Y++ Q GY DY + ++G G
Sbjct: 252 RNRGNRGSGGGQSQSWNQGYGN-YWNQGYGYQQGYGPGYGGYDYSPYGYYGYG 303
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 73/233 (31%), Positives = 109/233 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 KPF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK---KMXXXXXXXXX 275
P R F F+TF E D V K L + + K + A PK+ +
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN 252
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDW-HHGNG 327
S S G GN Y++ Q GY DY + ++G G
Sbjct: 253 RNRGNRGSGGGQSQSWNQGYGN-YWNQGYGYQQGYGPGYGGYDYSPYGYYGYG 304
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 67/211 (31%), Positives = 104/211 (49%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 36 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 95
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 96 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 152
Query: 224 KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXX 282
R F F+TF E + V K + ++ N+ K + A K++
Sbjct: 153 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA 212
Query: 283 XXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
S+ + G Y N+ GYN++
Sbjct: 213 RGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQ 243
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 41/145 (28%), Positives = 65/145 (44%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFV 232
P ++ T + K+F+G L+ D T+ DL+++F +G VVD + P R F FV
Sbjct: 17 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 76
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK-KMXXXXXXXXXXXXXXXXXXSPMSNS 290
F E +SV K ++ Q + + KV+ PK+ K +P
Sbjct: 77 LFKESESVDK-VMDQKEHKLNGKVI----DPKRAKAMKTKEPVKKIFVGGLSPDTPEEKI 131
Query: 291 RQYGGGNGYYDNRQQQQGGYNNKRR 315
R+Y GG G ++ + NKRR
Sbjct: 132 REYFGGFGEVESIELPMDNKTNKRR 156
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 67/211 (31%), Positives = 104/211 (49%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 6 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 65
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 66 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKT 122
Query: 224 KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXX 282
R F F+TF E + V K + ++ N+ K + A K++
Sbjct: 123 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRA 182
Query: 283 XXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
S+ + G Y N+ GYN++
Sbjct: 183 RGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQ 213
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 67/211 (31%), Positives = 104/211 (49%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 5 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 64
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 65 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKT 121
Query: 224 KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXX 282
R F F+TF E + V K + ++ N+ K + A K++
Sbjct: 122 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRA 181
Query: 283 XXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
S+ + G Y N+ GYN++
Sbjct: 182 RGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQ 212
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 69/215 (32%), Positives = 106/215 (49%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 KPF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E D V K L + + K + A PK+
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE-------VYQQQQY 245
Query: 279 XXXXXXSPMSNSRQYGGGNGYYD-NRQQQQGGYNN 312
+ +R GGG G + + Q++GG+ N
Sbjct: 246 GSGGRGNRNRGNRGSGGGQGSTNYGKSQRRGGHQN 280
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 69/215 (32%), Positives = 106/215 (49%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 90 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 149
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 150 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 205
Query: 224 KPF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E D V K L + + K + A PK+
Sbjct: 206 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE-------VYQQQQY 258
Query: 279 XXXXXXSPMSNSRQYGGGNGYYD-NRQQQQGGYNN 312
+ +R GGG G + + Q++GG+ N
Sbjct: 259 GSGGRGNRNRGNRGSGGGQGSTNYGKSQRRGGHQN 293
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 69/215 (32%), Positives = 106/215 (49%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP- 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 137 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192
Query: 224 KPF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E D V K L + + K + A PK+
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE-------VYQQQQY 245
Query: 279 XXXXXXSPMSNSRQYGGGNGYYD-NRQQQQGGYNN 312
+ +R GGG G + + Q++GG+ N
Sbjct: 246 GSGGRGNRNRGNRGSGGGQGSTNYGKSQRRGGHQN 280
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 67/197 (34%), Positives = 104/197 (52%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P ++ Q + + + G+ W T DLK+YF +FG + +
Sbjct: 67 DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTL 126
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 127 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 183
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTF-ELDSVAKSLIGQHV 248
VG L+PD E +RE+F +G V + +P R F F+TF E + V K + ++
Sbjct: 184 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 243
Query: 249 NIKDKKVVVMEATPKKK 265
N+ K + A K++
Sbjct: 244 NVGLSKCEIKVAMSKEQ 260
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 42/145 (28%), Positives = 65/145 (44%)
Query: 178 PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-KPF----REFAFV 232
P T+ T + K+F+G L+ D T+ DL+++F +G VVD + P R F FV
Sbjct: 82 PRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 141
Query: 233 TF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK-KMXXXXXXXXXXXXXXXXXXSPMSNS 290
F E +SV K ++ Q + + KV+ PK+ K +P
Sbjct: 142 LFKESESVDK-VMDQKEHKLNGKVI----DPKRAKAMKTKEPVKKIFVGGLSPDTPEEKI 196
Query: 291 RQYGGGNGYYDNRQQQQGGYNNKRR 315
R+Y GG G ++ + NKRR
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRR 221
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 70/233 (30%), Positives = 109/233 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK---KMXXXXXXXXX 275
P R F F+TF E D V K L + N+ K + A PK+ +
Sbjct: 118 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRG 177
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
+ S+ + G G Y N+ GY ++ Y + + G
Sbjct: 178 SYGGRGRGGRGGAQSQNWNQGYGNYWNQGYGNQGYGYQQGYGGYGGYDYSGYG 230
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 80/266 (30%), Positives = 124/266 (46%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG + + + D P Q L + G+ + TD+ L+E+FE++GTL V D T
Sbjct: 14 SGRRRRRRGEEGH-DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
RS+GFGF+ +S E AM + HK+ R+ + V +S K G V K+FVG
Sbjct: 73 KRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVG 131
Query: 197 SLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNI 250
+ D E +LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQG 308
V +A K++M M +GGG G + +G
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNFGGRG 247
Query: 309 GYNNKR--RRNDYDDWHHGNGGNSNN 332
GY R Y ++G GGN N+
Sbjct: 248 GYGGGGGGSRGSYGGGNYGGGGNYND 273
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 265 (98.3 bits), Expect = 3.6e-22, P = 3.6e-22
Identities = 61/209 (29%), Positives = 102/209 (48%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P +G ++ + + G+ W TD LKEYF QFG ++ V D TGRS+GFGF+ F
Sbjct: 101 PQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKD 160
Query: 155 HESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
++ M+K+H + +I D P+ E+ SK+FVG ++ + TE D ++ F +
Sbjct: 161 PKTVNTVMVKEHYLDGKIID---PKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQF 217
Query: 215 GAVVD--VLIPKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXX 269
G V+D ++I K R F FVTF+ ++ ++ + + + I K + V +A P+ +
Sbjct: 218 GRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEILGKTIEVKKAQPRGNLRDD 277
Query: 270 XXXXXXXXXXXXXXXSPMSNSRQYGGGNG 298
S+Q G G
Sbjct: 278 GDRGRRGRDFRDGSQGGSDGSQQQAGAQG 306
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 75/239 (31%), Positives = 113/239 (47%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F +S + + +K
Sbjct: 47 MFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQK 106
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
H++ R D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 107 EHRLDGRQID---PKRAMAIKKEPV-KKIFVGGLNPETTEEKIREYFGSFGEIETIELPT 162
Query: 225 -PF----REFAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPKK--KMXXXXXXXXXX 276
P R F F+TF+ + +V K L ++ N+ K + A PK+ +
Sbjct: 163 DPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGF 222
Query: 277 XXXXXXXXSPMSNSRQ-YG-------GGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
P + Q Y GG GY QQ GGY DY ++G G
Sbjct: 223 GGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGGQQGYGGYGGYGNY-DYSSGYYGYG 280
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 61/166 (36%), Positives = 91/166 (54%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRLID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
P R F F+TF E D V K L + N+ K + A PK+
Sbjct: 118 DPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKE 163
Score = 120 (47.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/102 (24%), Positives = 52/102 (50%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
K++ PV+ + V G+ T+ ++EYF +FG +E + +D T + +GF FI
Sbjct: 73 KKAMAMKKDPVKK--IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFI 130
Query: 151 RFSSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVAS 191
F + K + KK H + C++++ + ++ ++ +S
Sbjct: 131 TFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQFSS 172
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 60/163 (36%), Positives = 92/163 (56%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 7 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 66
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP----- 223
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V + +P
Sbjct: 67 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 123
Query: 224 KPFREFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
R F F+TF E + V K + ++ N+ K + A K++
Sbjct: 124 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 166
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 72/233 (30%), Positives = 109/233 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKK---KMXXXXXXXXX 275
P R F F+TF E + V K L + + K + A PK+ +
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN 247
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDW-HHGNG 327
S S G GN Y++ Q GY DY + ++G G
Sbjct: 248 RNRGNRGSGGGQSQSWNQGYGN-YWNQGYGYQQGYGPGYGGYDYSPYGYYGYG 299
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 67/214 (31%), Positives = 102/214 (47%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E + V K L + I K + A PK+
Sbjct: 188 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQYGSGGRGN 247
Query: 279 XXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
G G+ Y + Q++GG+ N
Sbjct: 248 RNRGNRGSGGGGGSGGQGSTNY-GKSQRRGGHQN 280
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 68/215 (31%), Positives = 106/215 (49%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E + V K L + + K + A PK+
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE-------VYQQQQY 240
Query: 279 XXXXXXSPMSNSRQYGGGNGYYD-NRQQQQGGYNN 312
+ +R GGG G + + Q++GG+ N
Sbjct: 241 GSGGRGNRNRGNRGSGGGQGSTNYGKSQRRGGHQN 275
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 68/215 (31%), Positives = 104/215 (48%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 132 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 187
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E + V K L + + K + A PK+
Sbjct: 188 DPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN 247
Query: 279 XXXXXXSPMSNSRQYGGGNGYYD-NRQQQQGGYNN 312
S GGG G + + Q++GG+ N
Sbjct: 248 RNRGNRG----SGGGGGGQGSTNYGKSQRRGGHQN 278
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 75/247 (30%), Positives = 116/247 (46%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 17 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 76
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 77 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 135
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K++M
Sbjct: 136 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 195
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYD---NRQQQQGGYNNKRRRNDYDDWHHG 325
GGG GY + GGY+ ++ ++G
Sbjct: 196 ASSQRGRGGGSGNFMGRGNFGGGGGGGGPGYGNPGGGYGGGGGGYDGYNEGGNFGGGNYG 255
Query: 326 NGGNSNN 332
GN N+
Sbjct: 256 GSGNYND 262
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 67/214 (31%), Positives = 101/214 (47%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+ NTGRSKGFGFI F S K + K
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQK 125
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 126 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 181
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXX 278
P R F F+TF E + V K L + I K + A PK+
Sbjct: 182 DPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQYGSGGRGN 241
Query: 279 XXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
G G+ Y + Q++GG+ N
Sbjct: 242 RNRGNRGSGGGGGSGGQGSTNY-GKSQRRGGHQN 274
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 72/245 (29%), Positives = 111/245 (45%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+S P + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 103
Query: 157 SALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G
Sbjct: 104 SVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFG 160
Query: 216 AVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXX 269
+ ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQ 220
Query: 270 XXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYDNRQQQQGGYNNKRRRNDYDDWH 323
R G G N YYD Q G YN+ D+ +
Sbjct: 221 QQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYD---QGYGNYNSAYG----DESY 273
Query: 324 HGNGG 328
G GG
Sbjct: 274 SGYGG 278
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 72/245 (29%), Positives = 111/245 (45%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+S P + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAA 103
Query: 157 SALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F +G
Sbjct: 104 SVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGAFG 160
Query: 216 AVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXX 269
+ ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQ 220
Query: 270 XXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYDNRQQQQGGYNNKRRRNDYDDWH 323
R G G N YYD Q G YN+ D+ +
Sbjct: 221 QQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYD---QGYGNYNSAYG----DESY 273
Query: 324 HGNGG 328
G GG
Sbjct: 274 SGYGG 278
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 238 (88.8 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 73/241 (30%), Positives = 116/241 (48%)
Query: 82 SGNSSATQSKRSYPDNSGPV--QNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVK 136
+G++ A S DN Q D L V G+ W T+ +L+++F ++G +E NVK
Sbjct: 29 NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVK 88
Query: 137 VDKNTGRSKGFGFIRFSSHESALK-AMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFV 195
D TGRS+GF FI F++ E+ K + +H I ++ D P+ K K+FV
Sbjct: 89 TDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVD---PKKAKARH-----GKIFV 140
Query: 196 GSLTPDLTESDLREHFEYYGAVVDVLIP----KPFRE-FAFVTFELDSVAKSLIGQ-HVN 249
G LT ++++ +++ +F +G +V+V +P K R+ F F+TF+ + V L+
Sbjct: 141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK 200
Query: 250 IKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGG 309
I K+V V ATPK + M R GG G Y+N+ QG
Sbjct: 201 IAGKEVDVKRATPKPE-------NQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGS 253
Query: 310 Y 310
Y
Sbjct: 254 Y 254
Score = 41 (19.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 295 GGNGYYDNRQQQQGGYNNKRRRNDY 319
GG G+ N +Q+GG ++R Y
Sbjct: 322 GGGGF--NGGKQRGGGGRQQRHQPY 344
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 81/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + NN
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGNN 253
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 56/149 (37%), Positives = 83/149 (55%)
Query: 80 DASGNSSATQSKRSYPDNS--GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANV 135
DAS N S P +S Q + + + G+ W T DLK+YF +FG + +
Sbjct: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
Query: 136 KVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
K+D TGRS+GFGF+ F ES K M K+HK+ ++ D + ++ K T+EPV K+F
Sbjct: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK--TKEPV-KKIF 185
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLIP 223
VG L+PD E +RE+F +G V + +P
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELP 214
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 74/253 (29%), Positives = 113/253 (44%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 79
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 136
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 137 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 196
Query: 268 XXXXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYD----NRQQQQGGYNNKRRRN 317
R G G N YYD N GG N
Sbjct: 197 QQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG 256
Query: 318 DYD--DWHHGNGG 328
YD +++GN G
Sbjct: 257 GYDYTGYNYGNYG 269
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 239 (89.2 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 57/156 (36%), Positives = 86/156 (55%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F K + +K
Sbjct: 97 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQK 156
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
H++ R D P+ +EPV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 157 EHRLDGRQID---PKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAFGEIETIELPM 212
Query: 225 -PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKK 254
P R F F+TF E ++V K L ++ N+ K
Sbjct: 213 DPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTK 248
Score = 44 (20.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 293 YGG-GNGYYDNRQQQQGGYNNKRRRNDYDDWHHGN-GGNSNN 332
YG G G Y QQ GGY DY ++G GG N
Sbjct: 305 YGNQGYGGYGG-QQGYGGYGGYGNY-DYSGGYYGGYGGYDYN 344
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 76/246 (30%), Positives = 116/246 (47%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 21 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 80
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 137
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 138 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE--- 194
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
S S R GGG G R + QG N+ N YD +
Sbjct: 195 ----VYRQQQQQQKGGKSNASGGR--GGGRG----RGRGQGQNWNQGFNNYYDQGY---- 240
Query: 328 GNSNNA 333
GN N+A
Sbjct: 241 GNYNSA 246
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 65/215 (30%), Positives = 100/215 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK 224
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 62 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPM 117
Query: 225 -PF----REFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMXXXXXXXXXXX 277
P R F F+TF+ + K ++ + H K+ + P + M
Sbjct: 118 DPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKRCGLGVGLPLQLMTQRWFLSVSRC 177
Query: 278 XXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
+R GGG G Q GY N
Sbjct: 178 ERDK------KGNRGSGGGGGSGSQSQSWNQGYGN 206
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 77/252 (30%), Positives = 119/252 (47%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEP--VASKVFVGSLTPDLTESD 206
+ +++ E AM + HK+ R+ + PE + E+ + K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVE---PERA-VSREDSHSLTVKIFVGGIKEDTEEHY 115
Query: 207 LREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEA 260
LR++ E YG V++++ + R FAFVTF+ DSV K +I ++ + D V +A
Sbjct: 116 LRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNCV-RKA 174
Query: 261 TPKKKMXXXXXXXXXXXXXXXXXXSPMS-NSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY 319
K++M S +S GGG G + G +N Y
Sbjct: 175 LSKQEMASASSSQRGRSGSGNGYGRSSSYDSYNNGGGGGSFGG-----GSGSNFGGGGSY 229
Query: 320 DDWHHGNGGNSN 331
+D+ + N +SN
Sbjct: 230 NDFSNYNNQSSN 241
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 75/243 (30%), Positives = 112/243 (46%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHH 324
+M M +GGG G + R GG R Y
Sbjct: 184 EMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNF-GRGGNYGGGPGYSSRGGYGGGGP 238
Query: 325 GNG 327
G G
Sbjct: 239 GYG 241
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 80/259 (30%), Positives = 119/259 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYDDWHHGNGGNSNN 332
R Y G+GG+ N+
Sbjct: 232 RGGGGYG----GSGGSYND 246
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 80/255 (31%), Positives = 122/255 (47%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNG--YYDNRQQQQGGYNNKRRR 316
+A K++M S S +GGG G + N +GG + R
Sbjct: 179 KALSKQEMASASSSQRGR-----------SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGI 227
Query: 317 ND-YDDWHHGNGGNS 330
D Y+ + GN G++
Sbjct: 228 GDGYNGF--GNDGSN 240
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALCKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 79/259 (30%), Positives = 116/259 (44%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYDDWHHGNGGNSNN 332
R Y G G N+
Sbjct: 232 RGGGGYGGSGDGYNGFGND 250
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 245 (91.3 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 80/269 (29%), Positives = 124/269 (46%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG + + + D P Q L + G+ + TD+ L+E+FE++GTL V D T
Sbjct: 14 SGRRRRRRGEEGH-DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
RS+GFGF+ +S E AM + HK+ R+ + V +S K G V K+FVG
Sbjct: 73 KRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVG 131
Query: 197 SLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNI 250
+ D E +LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQG 308
V +A K++M M +GGG G + +G
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNFGGRG 247
Query: 309 GYNNKR--RRNDY---DDWHHGNGGNSNN 332
GY R Y D ++G GG+ N
Sbjct: 248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGN 276
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 245 (91.3 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 80/269 (29%), Positives = 124/269 (46%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG + + + D P Q L + G+ + TD+ L+E+FE++GTL V D T
Sbjct: 14 SGRRRRRRGEEGH-DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
RS+GFGF+ +S E AM + HK+ R+ + V +S K G V K+FVG
Sbjct: 73 KRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVG 131
Query: 197 SLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNI 250
+ D E +LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQG 308
V +A K++M M +GGG G + +G
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNFGGRG 247
Query: 309 GYNNKR--RRNDY---DDWHHGNGGNSNN 332
GY R Y D ++G GG+ N
Sbjct: 248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGN 276
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 245 (91.3 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 80/269 (29%), Positives = 124/269 (46%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG + + + D P Q L + G+ + TD+ L+E+FE++GTL V D T
Sbjct: 14 SGRRRRRRGEEGH-DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
RS+GFGF+ +S E AM + HK+ R+ + V +S K G V K+FVG
Sbjct: 73 KRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVG 131
Query: 197 SLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNI 250
+ D E +LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQG 308
V +A K++M M +GGG G + +G
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNFGGRG 247
Query: 309 GYNNKR--RRNDY---DDWHHGNGGNSNN 332
GY R Y D ++G GG+ N
Sbjct: 248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGN 276
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 246 (91.7 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 78/254 (30%), Positives = 122/254 (48%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD+ L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 21 SKEGQPRE--PEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGF 78
Query: 150 IRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTE 204
+ +SS + +M + HK+ R+ + + S + + +P A K+FVG + D E
Sbjct: 79 VTYSSVDEVNASMDARPHKVDGRLVEPKRAVSRE-DSSKPFAHTTVKKIFVGGIKDDTEE 137
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
+ LR++F+ +G VV++++ R FAFVTF+ DSV + +I ++ + V
Sbjct: 138 NHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVR 197
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND 318
+A K++M N +YG NG Y+N GG N+
Sbjct: 198 KALSKQEMANTGRGGGGGGGGGG------GNFNRYGN-NGGYNNDFGGGGGGGNR----- 245
Query: 319 YDDWHHGNGGNSNN 332
D + G GG NN
Sbjct: 246 --DGYFGRGGRGNN 257
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 240 (89.5 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 76/246 (30%), Positives = 116/246 (47%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 57 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 116
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 117 AASVEKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 173
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 174 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE--- 230
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
S S R GGG G R + QG N+ N YD +
Sbjct: 231 ----VYRQQQQQQKGGKSNASGGR--GGGRG----RGRGQGQNWNQGFNNYYDQGY---- 276
Query: 328 GNSNNA 333
GN N+A
Sbjct: 277 GNYNSA 282
>UNIPROTKB|K7EN94 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000476201 Uniprot:K7EN94
Length = 222
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 54/125 (43%), Positives = 72/125 (57%)
Query: 57 KLADGHLYAPLDGWQDRVYYCTFDASGNSSATQSKRSYPDNSGPVQNT-DLVVLGIPWTF 115
+L G + APL D D + SSA + KR+ VQ T DL+VLG+PW
Sbjct: 107 RLQRGEI-APLHSSLDNKR--KMDETDASSAVKVKRA-------VQKTSDLIVLGLPWKT 156
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDV 175
T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K M ++H I R CD
Sbjct: 157 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 216
Query: 176 RIPES 180
++P S
Sbjct: 217 KLPNS 221
Score = 184 (69.8 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 5 MAQYIYVTNNLEEDGMEIPSEDDGTILLSTLQAQYPSAIGLKYK--VESRYRAVKLADGH 62
M++YI VT + ++ +EIPSEDDGT+LLST+ AQ+P A GL+Y+ V R V+L +G
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 63 LYAPLDGWQDRVYYCTF 79
L+AP GW + VY +
Sbjct: 61 LHAPDAGWGNLVYVVNY 77
Score = 64 (27.6 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTF-ELDSVAKSLI 244
S + V L TE DL+E+F +G V+ V + K + F FV F E ++ K +
Sbjct: 145 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 204
Query: 245 GQHV 248
+H+
Sbjct: 205 QRHM 208
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 75/250 (30%), Positives = 112/250 (44%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 5 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 64
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 65 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 123
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K++M
Sbjct: 124 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 183
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND------YDDW 322
G G + R GG R Y+ +
Sbjct: 184 ASSQRGKGGSGNFMGRGNFGGGGGNFGRGGNFGGRGGYGGGGGGGGSRGSFGGGDGYNGF 243
Query: 323 HHGNGGNSNN 332
GN G S N
Sbjct: 244 GDGNYGGSGN 253
Score = 121 (47.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 45/169 (26%), Positives = 71/169 (42%)
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVT 233
+S K G V K+FVG + D E +LRE+FE YG + ++V+ + R FAFVT
Sbjct: 89 DSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVT 147
Query: 234 FE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSR- 291
F+ D+V K ++ ++ I V +A K++M
Sbjct: 148 FDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQTASSQRGKGGSGNFMGRGNFGGGGG 207
Query: 292 QYG-----GGNGYYDNRQQ---QQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+G GG G Y +G + N + D ++G GN N+
Sbjct: 208 NFGRGGNFGGRGGYGGGGGGGGSRGSFGGGDGYNGFGDGNYGGSGNYND 256
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 68/228 (29%), Positives = 109/228 (47%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+F+++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCE 64
Query: 156 ESALKAMLKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHF 211
E + HK+ R+ + V +S K G V K+FVG + D E +LR++F
Sbjct: 65 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTGEYNLRDYF 123
Query: 212 EYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
E YG + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K++
Sbjct: 124 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 183
Query: 266 MXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
M M + +GGG G + + GY N+
Sbjct: 184 MQSAGSQRGCGGGSGNF----MGHGGNFGGGGGNFG--RGGNSGYGNQ 225
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 78/249 (31%), Positives = 113/249 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + + + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + K+ R+ + V +S + G V K+FVG + D TE
Sbjct: 60 VTYATVEEVDAAMNARPQKVNGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKED-TE 117
Query: 205 SDLREHFEYYGA--VVDVLIPK---PFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ +
Sbjct: 118 HHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC--- 174
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND 318
E K+ M S SR YG G Y N Q GY
Sbjct: 175 ETRVKQDMASASSSQRGRSGSGNFGYS--GGSRGYGSGGQGYGN---QGSGYGGS---GS 226
Query: 319 YDDWHHGNG 327
YD +++G G
Sbjct: 227 YDSYNNGGG 235
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 238 (88.8 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 244 (91.0 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 78/255 (30%), Positives = 119/255 (46%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 145
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 265 KMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQGGYNNKR--RRNDY- 319
+M M +GGG G + +GGY R Y
Sbjct: 206 EMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 320 --DDWHHGNGGNSNN 332
D ++G GG+ N
Sbjct: 262 GGDGGYNGFGGDGGN 276
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 77/247 (31%), Positives = 115/247 (46%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D+ P Q L + G+ + T++ L+ +FEQ+G L V D RS+GFGF+ +SS
Sbjct: 5 DSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
AM + HK+ R+ + V +S K G V K+FVG + D E +RE+
Sbjct: 65 SEVDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTV-KKIFVGGIKEDTEEYHIREY 123
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + +D++ + R F FVTF+ D+V K + ++ I V +A PK+
Sbjct: 124 FECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQ 183
Query: 265 KMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQ--QGGYNNKRRRNDYDDW 322
+M SN R GGG G + R +GGY R D
Sbjct: 184 EMQSS------------------SNQRYRGGGGGNFTGRGGNFGRGGYGGGRGGGD---G 222
Query: 323 HHGNGGN 329
++G GGN
Sbjct: 223 YNGFGGN 229
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 237 (88.5 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 68/215 (31%), Positives = 101/215 (46%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ W + DLK+YF +FG + +K+D NTGRS+GFGFI F S K + K
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 130
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDL-TESDLREHFEYYGAVVDVLIP 223
+H++ R+ D P+ ++PV K+FVG L P+ TE +RE+F +G + + +P
Sbjct: 131 EHRLDGRVID---PKKAMAMKKDPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 186
Query: 224 K-PF----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXX 277
P R F F+TF E + V K L + + K + A PK+
Sbjct: 187 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE-------VYQQQQ 239
Query: 278 XXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNN 312
+ +R GGG G Q GY N
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGN 274
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 229 (85.7 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 67/208 (32%), Positives = 101/208 (48%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 3 PEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG D E LR++FE Y
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSRRPGAHLTV-KKIFVGE---DTEEHHLRDYFEQY 118
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G V++++ + R FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 119 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 178
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGG 296
S+S YG G
Sbjct: 179 ASSSQRGRSGQSGRGYGGSSSSSSYGSG 206
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 233 (87.1 bits), Expect = 5.2e-19, P = 5.2e-19
Identities = 79/262 (30%), Positives = 120/262 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ +SV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYD---DWHHGNGGNSNN 332
R Y D ++G G + +N
Sbjct: 232 RGGGGYGGSGDGYNGFGNDGSN 253
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 228 (85.3 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 47/109 (43%), Positives = 68/109 (62%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 5 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 64
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
++ D + ++ K T+EPV K+FVG L+PD E +RE+F +G V
Sbjct: 65 NGKVIDPKRAKAMK--TKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEV 110
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 228 (85.3 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 62/178 (34%), Positives = 96/178 (53%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 29 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 88
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S + G V K+FVG + D E LR++FE Y
Sbjct: 89 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQY 147
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G V++++ + R FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 148 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 205
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 227 (85.0 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 62/182 (34%), Positives = 99/182 (54%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D+ P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++
Sbjct: 2 DSMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 61
Query: 156 ESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V I +S + G + K+FVG++ D E LR++
Sbjct: 62 EEVDAAMNARPHKVDGRVVEPKRAVSIEDSQRPGAY--LNMKIFVGAIKEDTEEHHLRDY 119
Query: 211 FEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
F YG V++++ + R FAFVTF+ DSV K +I ++ + V +A K+
Sbjct: 120 FGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQ 179
Query: 265 KM 266
+M
Sbjct: 180 EM 181
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 242 (90.2 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 74/253 (29%), Positives = 113/253 (44%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 255
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 315
Query: 268 XXXXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYD----NRQQQQGGYNNKRRRN 317
R G G N YYD N GG N
Sbjct: 316 QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG 375
Query: 318 DYD--DWHHGNGG 328
YD +++GN G
Sbjct: 376 GYDYTGYNYGNYG 388
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 242 (90.2 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 74/253 (29%), Positives = 113/253 (44%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 255
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 315
Query: 268 XXXXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYD----NRQQQQGGYNNKRRRN 317
R G G N YYD N GG N
Sbjct: 316 QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG 375
Query: 318 DYD--DWHHGNGG 328
YD +++GN G
Sbjct: 376 GYDYTGYNYGNYG 388
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 242 (90.2 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 74/253 (29%), Positives = 113/253 (44%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL EY +FG + +K D TGRS+GFGF+ F
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ ++ D + ++ K G E P KVFVG L+PD +E ++E+F
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALK-GKEPP--KKVFVGGLSPDTSEEQIKEYFGA 255
Query: 214 YGAVVDVLIPKPF-----REFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + + V K L ++ I K + A PK+
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 315
Query: 268 XXXXXXXXXXXXXXXXXS-PMSNSRQYG-----GGNGYYD----NRQQQQGGYNNKRRRN 317
R G G N YYD N GG N
Sbjct: 316 QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG 375
Query: 318 DYD--DWHHGNGG 328
YD +++GN G
Sbjct: 376 GYDYTGYNYGNYG 388
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 240 (89.5 bits), Expect = 8.1e-19, P = 8.1e-19
Identities = 79/268 (29%), Positives = 123/268 (45%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG + + + D P Q L + G+ + TD+ L+E+FE++GTL V D T
Sbjct: 14 SGRRRRRRGEEGH-DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72
Query: 142 GRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
RS+GFGF+ +S E AM + HK+ R+ + V +S K G V K+FVG
Sbjct: 73 KRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVG 131
Query: 197 SLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNI 250
+ D E +LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGY-YDNRQQQQGG 309
V +A K++M M +GGG + +GG
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGNFGRGGNFGGRGG 247
Query: 310 YNNKR--RRNDY---DDWHHGNGGNSNN 332
Y R Y D ++G GG+ N
Sbjct: 248 YGGGGGGSRGSYGGGDGGYNGFGGDGGN 275
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 238 (88.8 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 77/255 (30%), Positives = 118/255 (46%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K+
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 265 KMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQG----GYNNKRRRNDY- 319
+M M +GGG G + G G R+ Y
Sbjct: 184 EMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFXRGGNFGGKGXYGGGGGGXRSSYG 239
Query: 320 --DDWHHGNGGNSNN 332
D ++G GG+ N
Sbjct: 240 GGDGGYNGFGGDGGN 254
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 238 (88.8 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 82/264 (31%), Positives = 124/264 (46%)
Query: 82 SGNSSATQSKRSYPDNS--GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+GNS+ +P +S P L + G+ + TD +LK +FE++G + V D
Sbjct: 9 NGNSNGHDD--DFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDP 66
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR--IPESTKIGTEEPVAS--KV 193
T RS+GFGFI +S H S + K HKI R+ + + +P I + A+ K+
Sbjct: 67 RTKRSRGFGFITYS-HSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD-IDSPNAGATVKKL 124
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDV--LIPKPF---REFAFVTFE-LDSVAKSLIGQH 247
FVG+L D E +R++F+++G +VD+ +I K R FAFV F+ D V K ++ +
Sbjct: 125 FVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ 184
Query: 248 VNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQ 307
+ K V V +A PK+ N GGGN Y N Q
Sbjct: 185 HQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAG-----GNRGNMGGGN--YGN---QN 234
Query: 308 GGYNNKRRRNDYDDWHHGNGGNSN 331
GG N N ++W + GGN N
Sbjct: 235 GGGN---WNNGGNNWGNNRGGNDN 255
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 238 (88.8 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 82/275 (29%), Positives = 124/275 (45%)
Query: 80 DASGNS-----SATQSKRSYPDN-SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFA 133
DA G S + + K++ P + P Q L + G+ + TD L+ +FEQ+GTL
Sbjct: 5 DAQGRSLPMPKARRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC 64
Query: 134 NVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEP 188
V D NT RS+GFGF+ +++ E AM + HK+ R+ + V +S + G
Sbjct: 65 VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 124
Query: 189 VASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKS 242
V K+FVG + D E LR++FE YG V++++ + R FAFVTF+ DSV K
Sbjct: 125 V-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 183
Query: 243 LIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN 302
+I ++ + V +A K++M R GGG G DN
Sbjct: 184 VIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDN 236
Query: 303 -----RQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+GG+ R Y G G N+
Sbjct: 237 FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND 271
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 240 (89.5 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 64/241 (26%), Positives = 111/241 (46%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T+ +RS D S ++ + + G+ W T+++L+EYF ++GT+ + D TGRS+GF
Sbjct: 145 TKEERSKADLSK--ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF 202
Query: 148 GFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDL 207
GF+ F S + + +H + ++ D P+ E+ K+FVG + PD+ +
Sbjct: 203 GFLSFEKPSSVDEVVKTQHILDGKVID---PKRAIPRDEQDKTGKIFVGGIGPDVRPKEF 259
Query: 208 REHFEYYGAVVD--VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEAT 261
E F +G ++D +++ K R F FVT++ D+V + + ++ KD+K+ + A
Sbjct: 260 EEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
Query: 262 PKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYN---NKRRRND 318
P+ N G N Y N GGYN N + D
Sbjct: 320 PRHMQQKSSNNGGNNGGNNMNRRG--GNFGNQGDFNQMYQN--PMMGGYNPMMNPQAMTD 375
Query: 319 Y 319
Y
Sbjct: 376 Y 376
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 220 (82.5 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 70/234 (29%), Positives = 106/234 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FE++GTL V D NT R +GFGF+ +++ E AM +
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNAR 68
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + V +S + G V K+FVGS+ D E LRE+FE YG V+
Sbjct: 69 PHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGSIKEDTEEHHLREYFEQYGKIEVI 127
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ DSV K +I ++ + V +A K++M
Sbjct: 128 EIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 187
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
N +G N N +GG R Y G GG
Sbjct: 188 GRNGS--------GNYNDFGNYNNQSSNFGPMKGGNFGSRSSGSY-----GGGG 228
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 234 (87.4 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 79/259 (30%), Positives = 116/259 (44%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYDDWHHGNGGNSNN 332
R Y G G N+
Sbjct: 232 RGGGGYGGSGDGYNGFGND 250
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 234 (87.4 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 79/259 (30%), Positives = 116/259 (44%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYDDWHHGNGGNSNN 332
R Y G G N+
Sbjct: 232 RGGGGYGGSGDGYNGFGND 250
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 234 (87.4 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 79/259 (30%), Positives = 116/259 (44%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+ +++ E AM + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ + V
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNK 313
+A K++M R GGG G DN +GG+
Sbjct: 179 KALSKQEMASASSSQRGRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFGGS 231
Query: 314 RRRNDYDDWHHGNGGNSNN 332
R Y G G N+
Sbjct: 232 RGGGGYGGSGDGYNGFGND 250
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 234 (87.4 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 77/246 (31%), Positives = 118/246 (47%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 29 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 88
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LRE+FE Y
Sbjct: 89 AAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLREYFEKY 147
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G + ++V+ + R FAFVTF+ D+V K ++ ++ I V +A K++M
Sbjct: 148 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 207
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDD-WHHGNG 327
S+ R GGG+G + R GG N R ++ +G G
Sbjct: 208 A------------------SSQRGRGGGSGNFMGRGNFGGGGGNFGRGGNFGGRGGYGGG 249
Query: 328 GNSNNA 333
G +
Sbjct: 250 GGGGGS 255
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 217 (81.4 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 65/213 (30%), Positives = 101/213 (47%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L++ G+ + TD+ L+E+FE++GTL V D T RS+GFGF+ +S E
Sbjct: 4 PEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 63
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
A+ + HK+ R+ + V +S K G V K+FVG + D E +LR++FE Y
Sbjct: 64 AAVCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKY 122
Query: 215 GAV--VDVLIPKPF---REFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEATPKKKMX 267
G + ++V+ R FAFVTF+ ++ Q H+ I V +A K++M
Sbjct: 123 GKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHI-INGHNCEVKKALSKQEMQ 181
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYY 300
M +GGG G +
Sbjct: 182 SAGSQRGRGGGSGNF----MGRGGNFGGGGGNF 210
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 229 (85.7 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 76/262 (29%), Positives = 110/262 (41%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+ G + + D P Q L + G+ + TD+ L+E+FE+ GTL V D
Sbjct: 12 ERKGKGRKKERRMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDP 71
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVF 194
T S+GFGF+ S E AM + HK+ R+ + V +S K G V K+F
Sbjct: 72 QTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMV-KKIF 130
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDV---LIPKPFREFAFVTFE-LDSVAKSLIGQHVNI 250
VG + D E +LR++FE YG + R FAFVTF+ D+V K ++ +H I
Sbjct: 131 VGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTI 190
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGY 310
V A K++M M +GG GY +G Y
Sbjct: 191 NGHNCEVKRALSKQEMPCAGSQRGRGGGSSNF----MGRGGNFGGREGYGGGGGGSRGSY 246
Query: 311 NNKRRRNDYDDWHHGNGGNSNN 332
D +HG GG+ N
Sbjct: 247 GGS------GDRYHGFGGDGGN 262
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 229 (85.7 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 76/262 (29%), Positives = 110/262 (41%)
Query: 80 DASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
+ G + + D P Q L + G+ + TD+ L+E+FE+ GTL V D
Sbjct: 12 ERKGKGRKKERRMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDP 71
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVF 194
T S+GFGF+ S E AM + HK+ R+ + V +S K G V K+F
Sbjct: 72 QTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMV-KKIF 130
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDV---LIPKPFREFAFVTFE-LDSVAKSLIGQHVNI 250
VG + D E +LR++FE YG + R FAFVTF+ D+V K ++ +H I
Sbjct: 131 VGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTI 190
Query: 251 KDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGY 310
V A K++M M +GG GY +G Y
Sbjct: 191 NGHNCEVKRALSKQEMPCAGSQRGRGGGSSNF----MGRGGNFGGREGYGGGGGGSRGSY 246
Query: 311 NNKRRRNDYDDWHHGNGGNSNN 332
D +HG GG+ N
Sbjct: 247 GGS------GDRYHGFGGDGGN 262
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 214 (80.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 68/216 (31%), Positives = 102/216 (47%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L++ G+ + TD+ L+E+ E++GTL V D T S+GFGF+ +S E AM
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
HK+ R+ + V +S K G V K+FVG + D E +LR++FE YG + +
Sbjct: 61 PHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKYGKIETI 119
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+V+ + R FAFVTF+ D+V K + +H I V +A K++M
Sbjct: 120 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQEMQSAGPQRG 179
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGY 310
M +G G Y N Q GGY
Sbjct: 180 HGGGSGNF----MGRGGNFGRGGPGYGN---QGGGY 208
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 212 (79.7 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 3 PEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + + S + ++ P A K+FVG + D E LR++F Y
Sbjct: 63 AAMNARPHKVNGRVVEPKRAVSRE-DSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQY 121
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKK 265
G V++++ + R FAFVTF+ DSV K +I ++ + V +A ++
Sbjct: 122 GKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSNQR 178
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 212 (79.7 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 68/246 (27%), Positives = 111/246 (45%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+ TL D NT RS+GFGF+ +++ E
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ + + S + ++ P A ++ VG + D E LR++FE+Y
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSRE-DSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHY 119
Query: 215 GA--VVDVLIPKPF--REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXX 269
G V++++ + +EFAFVTF+ DSV K +I ++ + + + ++
Sbjct: 120 GKIEVIEIMTDRGSGKKEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETVALSKQEMASAS 179
Query: 270 XXXXXXXXXXXXXXXSP--MSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
P SR YG G G D Q GY YD +++G G
Sbjct: 180 SSQRGRSGSGNFGGGGPGYCEGSRGYGSG-GQGDGNQGS--GYGGS---GSYDRYNNGGG 233
Query: 328 GNSNNA 333
G A
Sbjct: 234 GGGFGA 239
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 211 (79.3 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 72/241 (29%), Positives = 111/241 (46%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
A GN + + ++ + V+ + +G + W+ DLK YF +FG + +K+D
Sbjct: 50 APGNQNRIEGEQIKVSKN--VEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDP 107
Query: 140 NTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSL 198
NTGRS+GFGF+ S K + K+H++ + D PE K+ +PV K+FVG L
Sbjct: 108 NTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVID---PEKAKVMKNDPV-KKIFVG-L 162
Query: 199 TPDLTESDLREHFEYYGAVVDVLIPK-PF----REFAFVTF--ELDSVAKSLIGQHVNIK 251
P+ TE + R+ F +G + + +P P R F F+TF E + V K L + I
Sbjct: 163 NPEATEKN-RD-FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTIS 220
Query: 252 DKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYN 311
+K + A PK+ S S GGG+ Y QQ+ G N
Sbjct: 221 GRKCEIKVAQPKEDYQQQQCGSGGRGNRNGGNRG--SGS---GGGSTNYRKSQQRCGHQN 275
Query: 312 N 312
N
Sbjct: 276 N 276
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 211 (79.3 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 73/244 (29%), Positives = 111/244 (45%)
Query: 100 PVQNTDLVVLGIPW--TFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
P Q L V G+ + T L +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEE 69
Query: 158 ALKAM-LKKHKIGNRICDVR---IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
AM + HK+G R + + +S + G + K+FVG + D E LR++ E
Sbjct: 70 VDAAMNARPHKVGGRAVEPKRAGSKDSQRPGAHLTM-KKIFVGGVKEDTEEHRLRDYLEQ 128
Query: 214 YGA--VVDVLIPKPF--REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXX 269
G V ++ + R+FAFVTF+ +SV K +I ++ + V +A K++M
Sbjct: 129 NGKTEVTEITTDRGSGKRDFAFVTFD-NSVDKIVIQKYSTVNGHNCEVRKALSKQEMASA 187
Query: 270 XXXXXXXXXXXXXXXSPMSNSRQ-YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGN-- 326
N R +GGG Y D G YN + +++ GN
Sbjct: 188 SSSQRGRSGSRNFGYKGFGNDRSNFGGGGSYNDF-----GNYNIQS--SNFGPMKGGNFG 240
Query: 327 GGNS 330
GG S
Sbjct: 241 GGGS 244
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 67/224 (29%), Positives = 104/224 (46%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+ TL V D NT RS+G GF +++ E
Sbjct: 15 PEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMD 74
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-- 216
AM + HK+ R+ V +S + G V K+F+ + D E LR++FE Y
Sbjct: 75 AAMNARPHKVDGRV--VSREDSQRPGAHLTV--KIFISGIKEDTEEHHLRDYFEQYRKIE 130
Query: 217 VVDVLIPKPFR---EFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXX 272
V++++ + R +FAFVTF E DSV K I ++ + V +A K++M
Sbjct: 131 VIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKALSKQEMASASSS 190
Query: 273 XXXXXXXXXXXXSPMSNSRQYGGGNG--YYDNRQQQQ-GGYNNK 313
S +GGG+G + D G YNN+
Sbjct: 191 QRGESGSGNYNNGGDRGS--FGGGSGSNFGDGGSYNDFGNYNNQ 232
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 207 (77.9 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F + +
Sbjct: 57 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 116
Query: 166 -HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI-- 222
H + R D P+ ++ ++K+FVG + + E++LRE+F+ +G V +V++
Sbjct: 117 PHTLDGRNID---PKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 173
Query: 223 ----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
+P R F F+TFE + + H + I KKV V A P+
Sbjct: 174 DAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 218
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 219 (82.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 80/254 (31%), Positives = 118/254 (46%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTF--TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
SK P GP Q L + G W+F TD L+ +F+Q G L V D NT RS+GF
Sbjct: 2 SKSESP--KGPEQLQKLFIGG--WSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGF 57
Query: 148 GFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDL 202
GF+ +++ E AM + HK+ R+ + + S+K ++ P A K+F G + D
Sbjct: 58 GFVTYTAVEEVDPAMHARPHKVDGRVVEPK-RTSSKEDSQRPGAHLTVKKIFAGGIKEDT 116
Query: 203 TESDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVV 256
E LR++FE YG V++++ + R FAFVTF+ DSV K +I ++ +
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWE 176
Query: 257 VMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGG--GNGYYDNRQQQQGGYNNKR 314
V +A K++M S S +GG G G+ N GG N R
Sbjct: 177 VRKALSKQEMASASCSQRG-----------QSGSGNFGGFRGCGFGGNDNFGHGG--NFR 223
Query: 315 RRNDYDDWHHGNGG 328
R + G GG
Sbjct: 224 GRGGFGG--SGGGG 235
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 224 (83.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 75/250 (30%), Positives = 111/250 (44%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +SS
Sbjct: 34 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVD 93
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R + V +S+K G V K+FVG + D E LRE+F +
Sbjct: 94 AAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTV-KKMFVGGIKEDTDEEHLREYFGQF 152
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G + V+++ K R FAF+TF+ D+V + +I ++ + V +A +++M
Sbjct: 153 GKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEMNR 212
Query: 269 XXXXXXXXXXXXXXXXSP-MSNSRQYGGGNGY---YDNRQQQQGG--YNNKRRRNDYDDW 322
GGG GY Y + GG Y N Y
Sbjct: 213 VSMNSRGGRGGGGGSGGGNFGRGGGGGGGGGYGGGYGGGGGRGGGGGYGGGDGYNGYGGG 272
Query: 323 HHGNGGNSNN 332
+ G GG N
Sbjct: 273 NGGYGGGGPN 282
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 222 (83.2 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 76/261 (29%), Positives = 118/261 (45%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFE-------QFGTLEFANVKVDKNTGRSKGFG 148
D P Q L + G+ + TD+ L+E+FE ++GTL V D T RS+GFG
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFG 64
Query: 149 FIRFSSHESALKAMLKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
F+ +S E + HK+ R+ + V +S K G V K+FVG + D E
Sbjct: 65 FVTYSCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTGE 123
Query: 205 SDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVM 258
+LR++FE YG + ++V+ + R FAFVTF+ D+V K ++ ++ I V
Sbjct: 124 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 183
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ--QQGGYNNKR-- 314
+A K++M M + +GGG G + +GGY
Sbjct: 184 KALSKQEMQSAGSQRGCGGGSGNF----MGHGGNFGGGGGNFGRGGNFGGRGGYGGGGGG 239
Query: 315 RRNDY---DDWHHGNGGNSNN 332
R Y D ++G GG+ N
Sbjct: 240 SRGSYGGGDGGYNGFGGDGGN 260
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 206 (77.6 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 53/176 (30%), Positives = 90/176 (51%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+NSG + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
+ + H + R + + P S + ++K+FVG + + E++LRE+F+ +
Sbjct: 62 NCVGTVLASRPHTLDGR--NQKGPRS-----DNSKSNKIFVGGIPHNCGETELREYFKKF 114
Query: 215 GAVVDVLI------PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPK 263
G V +V++ +P R F F+TFE + + H + I KKV V A P+
Sbjct: 115 GVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 169
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 217 (81.4 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 74/257 (28%), Positives = 116/257 (45%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTE 204
+ F++ E AM + +K+ R+ + + S + ++ P A K+FVG + D E
Sbjct: 60 VMFATVEEVDAAMNARPNKVNGRVLEPKRFVSRE-DSQRPAAYLTVKKIFVGGIKEDTEE 118
Query: 205 SDLREHFEYYGA--VVDVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVM 258
+ ++FE YG V++V+ + R FAFVTF+ DSV + +I ++ + V
Sbjct: 119 HE--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVR 176
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYG-GGNGYYDNRQQQQGGYNNKRRRN 317
+A K++M R G GGN +D+ G+ R
Sbjct: 177 KALLKQEMASASFSQRGQSGSGN-----FGGGRGGGFGGNDNFDHDNHWSRGFGGSRSGG 231
Query: 318 DYDDWHHGNGGNSNNAT 334
Y G G N+ +
Sbjct: 232 GYGGNADGYNGFDNDGS 248
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 181 (68.8 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 58/213 (27%), Positives = 95/213 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V G+ TD+ ++E++ QFG + V D T RS+GFGF+ FS AM ++
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84
Query: 166 -HKIGNRICDVR--IPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVV--D 219
H I + D + +P K +E V++K ++V + D TE L E+F YG V +
Sbjct: 85 PHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSE 144
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXX 275
+++ K R F FVTF+ DSV + ++ + + + V + K +M
Sbjct: 145 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDR 204
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQG 308
GGG G + Q+ G
Sbjct: 205 ETRGGRSRDGQRGGYNGGGGGGGGWGGPAQRGG 237
Score = 138 (53.6 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V L V G+ T++ L EYF ++GT+ + + +DK T + +GFGF+ F H+S +
Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQ 170
Query: 161 AMLKK-HKIGNRICDVR 176
+L+K H + CDVR
Sbjct: 171 CVLQKSHMVNGHRCDVR 187
Score = 98 (39.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---P--KPFREFAFVTFELDSVAKSLIGQ 246
K+FVG LT + T+ +RE + +G + D+++ P K R F FVTF + + + Q
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 247 HVNIKDKKVV-VMEATPK 263
+I D K V A P+
Sbjct: 84 RPHIIDGKTVDPKRAVPR 101
Score = 80 (33.2 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 292 QYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
Q GGG G + + QQQGG+ + + W H GGN N
Sbjct: 309 QQGGGGGGWGGQGQQQGGWGGQ---SGAQQWAHAQGGNRN 345
Score = 56 (24.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 291 RQYGGGNGYYDN-RQQQQGGYNNKRRRNDYDDWHHGNG 327
+Q GGG G + +QQQQGG+ ++ W G G
Sbjct: 285 QQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWG-GQG 321
Score = 55 (24.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 291 RQYGGGNGYYDNRQQQQGG 309
+Q GGG G + QQQQGG
Sbjct: 262 QQGGGGQGGWGGPQQQQGG 280
Score = 46 (21.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 293 YGG--GNGYYDNRQQQQGGYNNKRRRNDYDDW-HHGNGG 328
YGG G G+ QGG+ +++ W G GG
Sbjct: 252 YGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGG 290
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 302 NRQQQ-QGGYNNKRRRNDYDDWHHGNGG 328
NR ++ +GG + +R Y+ G GG
Sbjct: 201 NRDRETRGGRSRDGQRGGYNGGGGGGGG 228
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 203 (76.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 72/243 (29%), Positives = 115/243 (47%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + TD L+ +FEQ+GTL + V D NT RS GFGF+ +++ E AM ++
Sbjct: 2 LFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNER 61
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV 220
HK+ R+ + V +S + GT V K+FVG + D E LR++FE YG
Sbjct: 62 PHKVDERVLEPKRAVSREDSERTGTHLTV-KKIFVGVVKEDTEEHHLRDYFEQYGK---- 116
Query: 221 LIPKPFRE--FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXX 277
I + +++ F F TF+ DSV K +I ++ + V + K++M
Sbjct: 117 -IQRQWKKEGFCFFTFDDHDSVDKIVIQKYHTVGGHTCEVRKPLSKQEMASASSSQRGRS 175
Query: 278 XXXXXXXSPMSN-SRQYG---GGN--GYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
+N S ++G GGN G +G Y K R G GG+S+
Sbjct: 176 GSSYNGFGSYNNHSSKFGPMKGGNFGGGGSGPDGGRGQYFAKPRSQG------GYGGSSS 229
Query: 332 NAT 334
+++
Sbjct: 230 SSS 232
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 182 (69.1 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ ++ E
Sbjct: 17 PEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
Query: 160 KAMLKKH-KIGNRICDVRIP--ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA 216
+ K H + + ++R E ++ K+FVG + D E LR++ E YG
Sbjct: 77 R---KDHTRWMEELWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGK 133
Query: 217 --VVDVLIPKPFRE---FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
VV+++ + + FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 134 IEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 189
Score = 60 (26.2 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 289 NSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY 319
+S YGGG+ Y+ + Q QGGY + Y
Sbjct: 230 SSGPYGGGDQYFA-KPQNQGGYGGSSSSSSY 259
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 216 (81.1 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 57/163 (34%), Positives = 84/163 (51%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIG 169
GIP T + EYFEQ+GT++ + D T R++GF F+ +SH + + + H++
Sbjct: 120 GIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELN 179
Query: 170 NRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPFR 227
+ DVR +T T + K+FVG L T+ L +F +G VV +++ R
Sbjct: 180 GKRVDVREENNT---TPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGR 236
Query: 228 E--FAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPKK-KM 266
F FV F + SVAK L + I DK V V +A PKK KM
Sbjct: 237 SRCFGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPKKPKM 279
Score = 125 (49.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-K 164
+ V G+ + +T + L+ YF FG ++ + +D ++GRS+ FGF+ FS+ S K + K
Sbjct: 200 IFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVLKHK 258
Query: 165 KHKIGNRICDVRIPESTK 182
+HKI +++ +VR E K
Sbjct: 259 RHKIYDKMVEVRKAEPKK 276
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 216 (81.1 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 57/163 (34%), Positives = 84/163 (51%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIG 169
GIP T + EYFEQ+GT++ + D T R++GF F+ +SH + + + H++
Sbjct: 120 GIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELN 179
Query: 170 NRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPFR 227
+ DVR +T T + K+FVG L T+ L +F +G VV +++ R
Sbjct: 180 GKRVDVREENNT---TPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGR 236
Query: 228 E--FAFVTFELD-SVAKSLIGQHVNIKDKKVVVMEATPKK-KM 266
F FV F + SVAK L + I DK V V +A PKK KM
Sbjct: 237 SRCFGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPKKPKM 279
Score = 125 (49.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-K 164
+ V G+ + +T + L+ YF FG ++ + +D ++GRS+ FGF+ FS+ S K + K
Sbjct: 200 IFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVLKHK 258
Query: 165 KHKIGNRICDVRIPESTK 182
+HKI +++ +VR E K
Sbjct: 259 RHKIYDKMVEVRKAEPKK 276
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 70/236 (29%), Positives = 107/236 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 200
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGN 329
S +G G G N + GY + R D Y+ + G GGN
Sbjct: 201 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGN 253
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 212 (79.7 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 60/195 (30%), Positives = 98/195 (50%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
G+ A + S + G + + G+ W T +L++YF +FG + V D T
Sbjct: 24 GHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATK 83
Query: 143 RSKGFGFIRFSSHESALKAML-KKHKIGNRICDVRI--PEST--KIGTEEPVASKVFVGS 197
R++GFGFI F S K + ++H++ + D ++ P+ T K+ T+ KVF+G
Sbjct: 84 RARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTK---TKKVFIGG 140
Query: 198 LTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IK 251
L+ T D++++FE YG V D ++ + R F FVTF+ D VA + H + I
Sbjct: 141 LSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEIN 200
Query: 252 DKKVVVMEATPKKKM 266
K V +A PK+ M
Sbjct: 201 GKMVECKKAQPKEVM 215
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 214 (80.4 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 55/190 (28%), Positives = 96/190 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS
Sbjct: 3 TDAPQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDL 202
+GFGF+ F K + + +H++ ++ D ++ + + +K +FVG L+ +
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 203 TESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVV 256
T D++++FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 121 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 257 VMEATPKKKM 266
+A PK+ M
Sbjct: 181 CKKAQPKEVM 190
Score = 133 (51.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K+YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 213 (80.0 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 70/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ +H I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 214 (80.4 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 79/259 (30%), Positives = 120/259 (46%)
Query: 90 SKRSYPDN---SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
S +Y D + P Q L + G+ + TD+ LK +FE++G + V D T RS+G
Sbjct: 7 SNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRG 66
Query: 147 FGFIRFSSHESALKAM-LKKHKIGNRICDVR--IPESTKIGTEEPVAS--KVFVGSLTPD 201
FGFI +S A + HKI R + + +P +I + A+ K+FVG L D
Sbjct: 67 FGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQ-EIDSPNAGATVKKLFVGGLRDD 125
Query: 202 LTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFE-LDSVAKSLIGQHVNIKDKKV 255
E LRE+F+ +G +V V I R FAF+ F+ D V K ++ + +IK+K +
Sbjct: 126 HDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTL 185
Query: 256 VVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRR 315
V +A K+ M P + R GG G +R Q GG+ + R
Sbjct: 186 DVKKAIAKQDMDRQGGGGGRG--------GPRAGGR---GGQG---DRGQGGGGWGGQNR 231
Query: 316 RNDYDDWHH-GNGGNSNNA 333
+N +W G GG N+
Sbjct: 232 QNGGGNWGGAGGGGGFGNS 250
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 212 (79.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS
Sbjct: 3 TDAPQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDL 202
+GFGF+ F K + + +H++ ++ D ++ + + +K +FVG L+ +
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 203 TESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVV 256
T D++ +FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 121 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 257 VMEATPKKKM 266
+A PK+ M
Sbjct: 181 CKKAQPKEVM 190
Score = 131 (51.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 212 (79.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS
Sbjct: 3 TDAPQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDL 202
+GFGF+ F K + + +H++ ++ D ++ + + +K +FVG L+ +
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 203 TESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVV 256
T D++ +FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 121 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 257 VMEATPKKKM 266
+A PK+ M
Sbjct: 181 CKKAQPKEVM 190
Score = 131 (51.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 212 (79.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS
Sbjct: 3 TDAPQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDL 202
+GFGF+ F K + + +H++ ++ D ++ + + +K +FVG L+ +
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 203 TESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVV 256
T D++ +FE +G V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 121 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 257 VMEATPKKKM 266
+A PK+ M
Sbjct: 181 CKKAQPKEVM 190
Score = 131 (51.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K YFEQFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 208 (78.3 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 72/260 (27%), Positives = 108/260 (41%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+GN+S T + + ++ + V GI + DL +F Q+G + A VK D+
Sbjct: 9 NGNASETIKENGHSTKGN--EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66
Query: 142 GRSKGFGFIRFSSHESALKAMLKKHK-IGNRICDVRIPESTKIGTEEPVASKVFVGSLTP 200
GRS+GF F+ F++ E A+ + + I + +V+ P ++ E KVFVG L
Sbjct: 67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVK-PAKSR---EN---KKVFVGGLPS 119
Query: 201 DLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ-HVNIKDKK 254
D +E DLR HFE +G V D+ P K R FAF+ FE + A Q ++
Sbjct: 120 DYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRE 179
Query: 255 VVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGG----GNGYYDNRQQQQGGY 310
V +A P+ K +NS Y G G Y G +
Sbjct: 180 CDVKKAVPQGKRFPGAQGRMPGGRGMYGGRGGNNNSGWYAGWGQIGAMPYGATGAAWGDW 239
Query: 311 NNKRRRNDYDDWHHGNGGNS 330
HH N G+S
Sbjct: 240 YGNGYYGQQGAAHHNNSGSS 259
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 207 (77.9 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 66/248 (26%), Positives = 113/248 (45%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+GT V D NT RS+G GF+ +++ E
Sbjct: 10 PEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVD 69
Query: 160 KAMLKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + + R+ + V +S + G V K+FVG + D E LR++FE YG
Sbjct: 70 AAMNARPHVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYG 128
Query: 216 A--VVDVLIPKPF--REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXX 270
V++++ + + FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 129 KIEVIEIMTDRGSGKKGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQEMASAS 188
Query: 271 XXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQ---QGGYNNKRRRNDYD---DWHH 324
+GG + + R++ GG+ + Y D ++
Sbjct: 189 STQRDLSGSGNFGGG---RGGGFGGNDNFGGGRRRNFSGGGGFGGSQGGGGYGGSGDGYN 245
Query: 325 GNGGNSNN 332
G G + +N
Sbjct: 246 GFGNDGSN 253
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 208 (78.3 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 50/165 (30%), Positives = 86/165 (52%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKI 168
G+ W T L+EYF QFG ++ V D T RS+GFGF+ F K + + +H++
Sbjct: 6 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 65
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ + T D++++FE +G V D ++
Sbjct: 66 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 125
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + + + + H + I +K V +A PK+ M
Sbjct: 126 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVM 170
Score = 133 (51.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K+YFEQFG ++ A + DK
Sbjct: 66 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 125
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 126 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 162
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 192 (72.6 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 62/212 (29%), Positives = 100/212 (47%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +F+Q+G L V +D NT S+ FGF+ +++ E
Sbjct: 10 PKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVD 69
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
A+ ++ HK+ NRI ++ S + ++ P A K FVG + D E LR +FE Y
Sbjct: 70 AAVNVRPHKV-NRIGKPKMAVSRE-DSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQY 127
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G + ++++ + R FAFVT + DS+ K +I + + V A K++M
Sbjct: 128 GEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRALSKQEMAS 187
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGG-GNGY 299
N YGG GNGY
Sbjct: 188 ASTSRRSKGSGNFDGGCG-GNFSGYGGSGNGY 218
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 192 (72.6 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 64/220 (29%), Positives = 103/220 (46%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML 163
T L + + + TD+ L+E+ E++ TL V D RS GFGF+ +S E AM
Sbjct: 24 TKLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMC 82
Query: 164 KK-HKIGNRICDVRI---PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV-- 217
+ HK+ R+ R +S K GT V K+FVG + D E +L+++FE YG +
Sbjct: 83 ARPHKVDGRVVGPRAVSREDSVKPGTHLTV-KKIFVGGVREDREEYNLKDYFEKYGKIGT 141
Query: 218 VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXX 273
+DV+ + R FAFVTF+ LD+V K + ++ I + + K+ M
Sbjct: 142 IDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVLSKQGMQSAGSQR 201
Query: 274 XXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
+ + GGGN + +GGY+++
Sbjct: 202 GRGGGSGNLMGR--GGNFEGGGGNSGHGGNFSGRGGYSSR 239
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 208 (78.3 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 58/193 (30%), Positives = 98/193 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
S +QS S D+ P + + G+ W T LK+YF +FG ++ + V D T RS
Sbjct: 3 SEGSQSNLSSSDS--PHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRI--PEST--KIGTEEPVASKVFVGSLT 199
+GFGF+ F K + + +H++ ++ D ++ P K+ T K+FVG L+
Sbjct: 61 RGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTR---TKKIFVGGLS 117
Query: 200 PDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDK 253
+ T D++++F+ +G V D ++ R F FVTFE + V + + H + I +K
Sbjct: 118 VNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNK 177
Query: 254 KVVVMEATPKKKM 266
V +A PK+ M
Sbjct: 178 MVECKKAQPKEVM 190
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K+YF+QFG ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 182
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 207 (77.9 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 190 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 243
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 207 (77.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/234 (28%), Positives = 106/234 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ T+ L+ Y++Q+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + ++ D V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSVDGKVVDPKRAVAREESEKPGAHLAV-KKLFVGGIKEDTEEHHLRDYFEKYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSRQEMQEVQSSTS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
S +G G G ++ +GGYN R D ++G GG
Sbjct: 202 GRGGHIGLGDS-CGGGGNFGAGPG-----RKYKGGYNGYGRGPGLGDGYYGYGG 249
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 200
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 201 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 254
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 69/237 (29%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 201 (75.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 72/243 (29%), Positives = 106/243 (43%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+ TL V D NT RS+G GF +++ E
Sbjct: 11 PEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMD 70
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGS-LTPDLTESDLREHFEYYGA- 216
AM + HK+ R+ V +S + G V K+F+ S + D E LR++FE Y
Sbjct: 71 AAMNARPHKVDGRV--VSREDSQRPGAHLTV--KIFIVSGIKEDTEEHHLRDYFEQYRKI 126
Query: 217 -VVDVLIPKPFR---EFAFVTF-ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXX 271
V++++ + R +FAFVTF E DSV K I ++ + V +A K++M
Sbjct: 127 EVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKALSKQEMASASS 186
Query: 272 XXXXXXXXXXXXX-SP--MSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
P SR G G Y N G + N D G G
Sbjct: 187 SQRGESGSGKYEGVGPGYSGGSRVCGSGGQDYGNGSGYGGSGSYDSYNNGGDRGSFGGGS 246
Query: 329 NSN 331
SN
Sbjct: 247 GSN 249
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 203 (76.5 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 70/236 (29%), Positives = 108/236 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L V G+ TD L+ +FEQ+G L V +++ RS+ FGF+ +SS E A AM +
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSAR 67
Query: 165 KHKI-GNRICDVRIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAV--VD 219
H + GN + R G E +A K+FVG L D+ + L+++F +G +
Sbjct: 68 PHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQ 127
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXX 275
V+ K R F FV F+ DS K+++ + +I KV V +A K++M
Sbjct: 128 VITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQEMQSTGGGRGG 187
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
S GG GYY++ Q G+ N + YD + GG S+
Sbjct: 188 RGGRGMGRGSGFGG----GGRGGYYNDYGYQNNGFGNN---SGYDSQNGYGGGYSD 236
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 198 (74.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 55/170 (32%), Positives = 86/170 (50%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ W T YF +FG + + + D+ TG +GFGF+ F+ A K + +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 166 HKIGNRICDVR--IPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
H I +R D++ +P K + V+ K+FVG L P L E +L+ +F YG +++
Sbjct: 128 HVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQ 187
Query: 222 IPKPF-----REFAFVTFEL-DSVAKSLIGQHVN-IKDKKVVVMEATPKK 264
I R F FVTF+ DSV + V+ + DK+V + A PK+
Sbjct: 188 IMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKR 237
Score = 119 (46.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAML-- 163
+ V G+P +++LK YF +G + + D +TGRS+GFGF+ F + +S +
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 164 KKHKIGNRICDVRIPESTKIGTEEPVAS 191
K H++G++ +++ E + G + S
Sbjct: 219 KVHELGDKQVEIKRAEPKRTGRDNSFRS 246
Score = 46 (21.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 289 NS-RQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSP 337
NS R YG +G YD G N + G G + N+ V+P
Sbjct: 242 NSFRSYGA-SGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNP 290
Score = 39 (18.8 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWH 323
YGGG + + G N + D +H
Sbjct: 335 YGGGKSHGNGNNGSSSGKGNGTNGSGPDRYH 365
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 204 (76.9 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 73/246 (29%), Positives = 113/246 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FEQ+G L V +D NT RS+GFGF+ +++ E AM +
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMNAR 83
Query: 165 KHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VV 218
K+ R+ + V +S + G V K+FVG + D E LR++FE YG V+
Sbjct: 84 PQKMDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 142
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R FAFVTF+ DSV K +I ++ V +A K++M
Sbjct: 143 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKALSKQEMASASSSQR 202
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDN-----RQQQQGGYNNKRRRNDY---DDWHHGN 326
R GGG G DN +GG+ R Y D ++G
Sbjct: 203 GRSGSGN-----FGGGR--GGGFGGNDNFGRGGNFSGRGGFAGSRGGGGYAGSGDGYNGF 255
Query: 327 GGNSNN 332
G + +N
Sbjct: 256 GNDGSN 261
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 206 (77.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 69/237 (29%), Positives = 106/237 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K + ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 255
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 68/239 (28%), Positives = 107/239 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + TD L+ +FEQ+ TL + D N+ RS+GFG I +++ E AM +
Sbjct: 2 LFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNAR 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYYGA--VV 218
HK+ R+ + ++ S + + P A K+FVG D E LR +FE YG V+
Sbjct: 62 PHKVDGRVVEPKVAVSRE-DSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVI 120
Query: 219 DVLIP---KPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ R FAFVTF+ DSV +I ++ + V +A K++M
Sbjct: 121 EIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLKQEMASASSSQR 180
Query: 275 XXXXXXXXXXS-PMSNSRQ-YGG-GNGY--YDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
+S+ YGG G+GY + N GG +G GG
Sbjct: 181 GRRRDVSGHGGFGVSHGGGGYGGSGDGYNGFGNDGSNFGGGMKGGNFGGRSSGPYGGGG 239
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 206 (77.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 54/190 (28%), Positives = 95/190 (50%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
+ A Q + PD+ P + + G+ W T L+EYF QFG ++ V D T RS
Sbjct: 3 TDAPQPGLASPDS--PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 145 KGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDL 202
+GFGF+ F K + + +H++ ++ D ++ + + +K +FVG L+ +
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 203 TESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVV 256
T D++++FE + V D ++ R F FVTFE + + + + H + I +K V
Sbjct: 121 TVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 257 VMEATPKKKM 266
+A PK+ M
Sbjct: 181 CKKAQPKEVM 190
Score = 125 (49.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K+YFEQF ++ A + DK
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKT 145
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 146 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 189 (71.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 65/236 (27%), Positives = 105/236 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
L + G+ + T + + +FEQ GTL V+ D NT RS+GFGF+ +++ E AM +
Sbjct: 2 LFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNAR 61
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLI 222
HK+ D R+ E + + E FV + D E L+ ++E YG V++++
Sbjct: 62 PHKV-----DARVVEPNRAVSREDSQRPGFVCGIKEDTEEHHLQNNYEQYGQIEVIEIMT 116
Query: 223 PKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXX 279
+ R+FAFVTF + + ++ ++ N+ V +A K+
Sbjct: 117 DRGLGKKRDFAFVTFHDHDLDEIVLQKYHNVHGYNCEVRKALSKQSPDYSGGGRGYGSGG 176
Query: 280 XXXXXSPMSNSRQYGGGNGYYD--NRQQQQGGYNNKRRRNDYDDWHHGNG-GNSNN 332
YGG +G YD N +GG+ R N + NG GN NN
Sbjct: 177 QNYG----KQGSGYGG-SGSYDTYNNGGSRGGFGGGSRSN-FGGVRSYNGFGNYNN 226
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 197 (74.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 52/168 (30%), Positives = 88/168 (52%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK- 164
L V G+ W T +L YF +FG + V + +GRS+GFGF+ F+ + +
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 165 KHKIGNRICDVRIPESTKIGTEEPVAS---KVFVGSLTPDLTESDLREHFEYYGAVVDVL 221
H + R D + P + + ++P KVF+G L ++TE+DLR F YG V +V+
Sbjct: 69 PHTLDGRTIDPK-PCNPRT-LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126
Query: 222 I-----PKPFREFAFVTFELDSVAKSLIGQ-HVNIKDKKVVVMEATPK 263
I K R F F++FE +S + + + ++N+ K+V + +A P+
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
Score = 48 (22.0 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 286 PMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDW 322
P+ G G+ + QQQQ GY N Y W
Sbjct: 226 PIGAPNMMPGYQGWGTSPQQQQYGYGNSGP-GSYQGW 261
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 325 GNGG-NSNNATV 335
G+GG NSNN+TV
Sbjct: 176 GSGGQNSNNSTV 187
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 201 (75.8 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 68/237 (28%), Positives = 106/237 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++F YG + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 190 GRGGNFGFGDS-RGGGGNFGPGPG--SNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 243
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 194 (73.4 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 69/245 (28%), Positives = 112/245 (45%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ FEQ GTL V+ D N RS+GFGF+ +++ E +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEE-V 68
Query: 160 KAMLKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
K + H + R+ + + +S + G PV KVFVG + D E LR++FE YG
Sbjct: 69 KG--RPH-VDERVVEPKWAISREDSQRPGAHLPV-KKVFVGGIKEDTEEHHLRDYFEQYG 124
Query: 216 A--VVDVLIPKPF--REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXX 270
V++++ + R FAF+ F+ DS+ K +I ++ V +A K++M
Sbjct: 125 RIEVIEIMTDQGSGKRGFAFILFDDHDSIDKIVIQKYHTGNGLNCEVRKALSKQEMASAS 184
Query: 271 XXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDD---WHHGNG 327
+ S +G G G + R GG+ R Y ++G G
Sbjct: 185 SSQRDFGGGRGGG---LGGSDNFGRG-GNFSGR----GGFGGSRGGGGYAGSGYCYNGFG 236
Query: 328 GNSNN 332
+ +N
Sbjct: 237 NDGSN 241
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 199 (75.1 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 71/244 (29%), Positives = 109/244 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR 70
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 219 DVLIPKPF--REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXX 275
+++ + R F FVTF+ D V K ++ ++ V +A +++M
Sbjct: 130 EIITDRQSGKRGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSRQEMQEVQNSRSG 189
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN--SNNA 333
+SR GGGN +GG + + D ++G GG S N
Sbjct: 190 RPRTLL-----FGDSRG-GGGNSGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPRSGNF 243
Query: 334 TVSP 337
SP
Sbjct: 244 GGSP 247
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 201 (75.8 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 68/237 (28%), Positives = 107/237 (45%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG + +
Sbjct: 79 PHTIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 137
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +++M
Sbjct: 138 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQNSRS 197
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
+ +G G G N + GY + R D Y+ + G GG +
Sbjct: 198 GRGGNFGFGDA-RGGGGNFGPGPG--SNFRGGADGYGSGRGFGDGYNGYGGGPGGGN 251
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 184 (69.8 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 56/160 (35%), Positives = 85/160 (53%)
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK-HKI-GNRI- 172
+++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM H + GN +
Sbjct: 19 SESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVE 78
Query: 173 --CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--VDVLIPKPF-- 226
V +S + G V K+FVG L D+ E DL EHF +GAV +++ K
Sbjct: 79 LKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137
Query: 227 -REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
R F FV F+ D+ K+ + + I+ +V V +A PK+
Sbjct: 138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 143 (55.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFG +E A + DK
Sbjct: 74 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADK 133
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F SH++A KA ++K H I G+R+
Sbjct: 134 QSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRV 168
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 199 (75.1 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH-KI 168
G+ W + + L++YF +FG + V D T RS+GFGF+ F+ S K + + H ++
Sbjct: 5 GLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 64
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ + D++++FE +G V D ++
Sbjct: 65 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 124
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + V + + H + I +K V +A PK+ M
Sbjct: 125 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM 169
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + D+K+YFEQFG +E A + DK
Sbjct: 65 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 124
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 125 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 161
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 190 (71.9 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 68/222 (30%), Positives = 102/222 (45%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH--ES 157
P Q L + G+ T+ L+ + EQ+G L V+ D NT S+GFGFI ++ E
Sbjct: 10 PEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEE 69
Query: 158 ALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFE 212
AM + HK+ R+ + V +S + G V K FVG + D E LR++FE
Sbjct: 70 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKTFVGGIKEDTEEHHLRDYFE 128
Query: 213 YYGA--VVDVLI-P-KPFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
YG V++++I P R FAFVTF+ DSV K +I ++ + V +A K++
Sbjct: 129 QYGKIEVIEIMIDPGSGKRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKKALSKQEQT 188
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGG 309
S S +G G G+ N +GG
Sbjct: 189 SVSSSQRDR-----------SGSGNFGHGGGFGGNDNFGRGG 219
Score = 42 (19.8 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 288 SNSRQYGGGNGYYD----NRQQQ-----QGGYNNKRRRNDYDDWHHGNGGNSNN 332
++ +GGG Y D N Q +GG R Y +G NS++
Sbjct: 248 NDGSNFGGGRSYNDFGNYNNQSSNFGPTKGGNFGGRSSGPYGGGDYGGSSNSSS 301
Score = 39 (18.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHH 324
YGG Y + R ND+ ++++
Sbjct: 236 YGGSGDVYSGFGNDGSNFGGGRSYNDFGNYNN 267
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 199 (75.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH-KI 168
G+ W + + L++YF +FG + V D T RS+GFGF+ F+ S K + + H ++
Sbjct: 27 GLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ + D++++FE +G V D ++
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + V + + H + I +K V +A PK+ M
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM 191
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + D+K+YFEQFG +E A + DK
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 202 (76.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH-KI 168
G+ W + + L++YF +FG + V D T RS+GFGF+ F+ S K + + H ++
Sbjct: 27 GLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHEL 86
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ + D++++FE +G V D ++
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + V + + H + I +K V +A PK+ M
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM 191
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + D+K+YFEQFG +E A + DK
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 197 (74.4 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 72/243 (29%), Positives = 108/243 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ +++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 166 -HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + GN + V +S + G V K+FVG L D+ E DL EHF +GAV
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGAVEKA 127
Query: 219 DVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ K R F FV F+ D+ K+ + + I+ +V V +A PK+ +
Sbjct: 128 EIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGAR 187
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGG------YNNKRRRNDYDDWHHGNGG 328
R GGG G D +GG YN+ Y + G GG
Sbjct: 188 AARGGRGG-----GRGRGGGGGGGGRDQNGLAKGGGGGGGGYNSYGGYGGYGAYGGGGGG 242
Query: 329 NSN 331
+
Sbjct: 243 GGS 245
Score = 143 (55.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFG +E A + DK
Sbjct: 74 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADK 133
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F SH++A KA ++K H I G+R+
Sbjct: 134 QSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRV 168
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 293 YGGGNGYYDNRQQQQGGY 310
YG G G + + Q Q Y
Sbjct: 251 YGNGFGGFGSYSQHQSSY 268
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 61/196 (31%), Positives = 94/196 (47%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD-----LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKV 137
G++ + S RS P SG +D L V G+ W + + LKEYF FGT+ +
Sbjct: 178 GSNKSGSSGRSTPSLSGG-SGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMK 236
Query: 138 DKNTGRSKGFGFIRFSSH---ESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVF 194
D T RS+GFGFI F E LK + H + + D + + K+F
Sbjct: 237 DPVTQRSRGFGFITFQEPCTVEKVLKVPI--HTLDGKKIDPKHATPKNRPRQANKTKKIF 294
Query: 195 VGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFVTFELDSVAKSLIGQHVN 249
VG ++ D + +++ +F +G V + ++ K R F FVTFE + V + H +
Sbjct: 295 VGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFH 354
Query: 250 -IKDKKVVVMEATPKK 264
IK+KKV +A PK+
Sbjct: 355 TIKNKKVECKKAQPKE 370
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 199 (75.1 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/165 (29%), Positives = 86/165 (52%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH-KI 168
G+ W + + L++YF +FG + V D T RS+GFGF+ F+ S K + + H ++
Sbjct: 27 GLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ + D++++FE +G V D ++
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + V + + H + I +K V +A PK+ M
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM 191
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + D+K+YFEQFG +E A + DK
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 147 TNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 69/237 (29%), Positives = 106/237 (44%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS AM +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 166 -HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + V ES K G V K+FVG + D E LR++FE YG V +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTV-KKLFVGGIKEDTEEHHLRDYFEEYGKVDTI 141
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F F TF+ D V K ++ ++ I V +A +++M
Sbjct: 142 EIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
S +G G G N + GY + R D Y+ + G GG +
Sbjct: 202 GRGGNFGFGDSH-GGGGNFGPGPG--SNFRGGSYGYGSGRGFGDGYNGYGGGLGGGN 255
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 181 (68.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 54/182 (29%), Positives = 92/182 (50%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIR-FSS 154
D P Q L + + + TD+ L+E+FE++GTL+ ++ D RS+ FGF+ +S
Sbjct: 10 DPKEPEQLRKLFIGCLSFETTDDSLREHFEKWGTLDCVVMR-DLQIKRSRSFGFVSTYSC 68
Query: 155 HESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLRE 209
+ AM + HK+ + + V +S K G V K+FVG + D E +LR+
Sbjct: 69 VKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRD 127
Query: 210 HFEYYGAV--VDVLIPKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
+FE YG + ++V+ + R FAFVTF+ ++ ++ I V +A K+
Sbjct: 128 YFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQKYHTINGHNYEVKKAVSKQ 187
Query: 265 KM 266
+M
Sbjct: 188 EM 189
>UNIPROTKB|F1LXW0 [details] [associations]
symbol:F1LXW0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
Uniprot:F1LXW0
Length = 293
Score = 194 (73.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 74/253 (29%), Positives = 111/253 (43%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + + TD L+ +FEQ+ T V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLWKLFTGALSFETTDESLRSHFEQWTT--HCGVMRDPNTKRSRGFGF 57
Query: 150 IRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEP---VASKVFVGSLTPDLTES 205
+ +++ E M + HK+ R+ + + S + ++ P +A K+FVG + D E
Sbjct: 58 VTYATVEEVDAVMNARPHKVDGRVVEPKRAVSRE-DSQRPGAHLAVKIFVGGIKEDTEEH 116
Query: 206 DLREHFEYYGAVVDVLIPKPFREFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKK 264
LR++ E G K R FA VTF+ DSV K +I Q + V +A K+
Sbjct: 117 HLRDYSEQNGKKQRQWKKK--RGFALVTFDAHDSVDKIVI-QKYHTNGHSCEVRKALWKQ 173
Query: 265 KMXXXXXXXXXXXXXXXXXXSPMSNSRQYG------GGNGYYDNRQQQQGGYNNKRRRND 318
+M S + YG GG+G YD+ G N R+
Sbjct: 174 EMTSASSKQKGYPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSNISSDNGSNFGGVRS- 232
Query: 319 YDDWHHGNGGNSN 331
Y+D+ + N +SN
Sbjct: 233 YNDFGNYNNQSSN 245
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 201 (75.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 47/161 (29%), Positives = 86/161 (53%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKI 168
G+ W T+ L +F+++G + + D TGRS+GFGF+ F +S + A+LK +H +
Sbjct: 168 GLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKS-VDALLKDRHVL 226
Query: 169 GNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--VLIPKPF 226
++ D P+ ++ K+FVG + P +TE + F +G ++D ++I K
Sbjct: 227 DGKLID---PKRAISKEDQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDT 283
Query: 227 ---REFAFVTFELDS-VAKSLIGQHVNIKDKKVVVMEATPK 263
R F FVT++ + V K + +++ +K K + V A P+
Sbjct: 284 GRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 193 (73.0 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 62/246 (25%), Positives = 109/246 (44%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ+G L V D NT S+GFGF+ +++ +
Sbjct: 10 PEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD 69
Query: 160 KAMLKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
A + HK+ R+ + V +S + G V K+FVG + D E LR++F+ YG
Sbjct: 70 AA--RSHKVDGRVVEPKRAVSREDSQRPGAHLTVR-KIFVGGIKEDTEEHHLRDYFKQYG 126
Query: 216 A--VVDVLIPKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXX 270
V++++ + R FA VTF+ K +I ++ + V +A K++M
Sbjct: 127 KIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQKYYIVNGHNCEVRKALSKQEMASAS 186
Query: 271 XXXXXXXXXXXXXXSPMSNSRQYGGGNGY-YDNRQQQQGGYNNKRRRNDYD---DWHHGN 326
+GG + + + QGG++ + Y D ++G
Sbjct: 187 SSRGRSGSGNFGG----GRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGGSGDGYNGF 242
Query: 327 GGNSNN 332
G + N
Sbjct: 243 GNDGGN 248
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 194 (73.4 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 70/243 (28%), Positives = 113/243 (46%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FE +GTL V D NT RS+GFGF+ +++ E
Sbjct: 10 PEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVD 68
Query: 160 KAM-LKKHKIGNRICDVRIP---ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYG 215
AM + HK+ R+ + + E ++ K+FVG + + TE LR++FEY
Sbjct: 69 AAMNARPHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIKEN-TEDHLRDYFEYGK 127
Query: 216 A-VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXX 270
V++++ + R F FVTF+ DSV K +I ++ + V +A K++M
Sbjct: 128 IEVIEIMTDRGSGKKRGFTFVTFDDHDSVDK-IIQKYHTVNGHNCEVRKALSKQEMASAS 186
Query: 271 XXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNR---QQQQGGYNNKRRRNDYDDWHHGNG 327
+S S +GGG G R +GG N + Y + GN
Sbjct: 187 SSQS------------LSGSGNFGGGCGGNSGRGGFSGSRGGGGNGGSGDGYSGF--GND 232
Query: 328 GNS 330
G++
Sbjct: 233 GSN 235
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 197 (74.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 48/165 (29%), Positives = 83/165 (50%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKI 168
G+ W + L++YF ++G + A V D T RS+GFGF+ FS S K + + H++
Sbjct: 35 GLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHEL 94
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
+ D ++ + + +K +FVG L+ T D++ +FE +G + D ++
Sbjct: 95 DGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQ 154
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTF+ + V + H + I +K V +A PK+ M
Sbjct: 155 TNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVM 199
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 91 KRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
K ++P + P V T + +G + T D+K YFEQFG +E A + DK T R +GF
Sbjct: 102 KVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGF 161
Query: 148 GFIRFSSHESALKAM-LKKHKIGNRICDVR 176
GF+ F S + K + H+I N++ + +
Sbjct: 162 GFVTFQSEDVVDKVCEIHFHEINNKMVECK 191
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 197 (74.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKH-KI 168
G+ W + + L++YF +FG + V D T RS+GFGFI F+ S K + + H ++
Sbjct: 27 GLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHHEL 86
Query: 169 GNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI----- 222
++ D ++ + + +K +FVG L+ D++++FE +G V D ++
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 223 PKPFREFAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
R F FVTFE + + + + H + I +K V +A PK+ M
Sbjct: 147 TNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQPKEVM 191
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + + D+K+YFEQFG +E A + DK
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F + + K + H+I N++ + +
Sbjct: 147 TNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECK 183
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 193 (73.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 71/241 (29%), Positives = 106/241 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ +++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 166 -HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + GN + V +S + G V K+FVG L D+ E DL EHF +G V
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 219 DVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ K R F FV F+ D+ K+ + + I+ +V V +A PK+ +
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 275 XXXXXXXXXXSPMSNSRQY-----GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
R GGG GY GGY Y+ + G GG+
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGY-----NSYGGYGGGGG-GGYNAYGGGGGGS 241
Query: 330 S 330
S
Sbjct: 242 S 242
Score = 145 (56.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFGT+E A + DK
Sbjct: 74 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADK 133
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F +H++A KA ++K H I G+R+
Sbjct: 134 QSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 168
Score = 41 (19.5 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
YG G G + + Q Q Y + GG SN+
Sbjct: 248 YGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNS 287
Score = 40 (19.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRN--DYDDWHHGNGGNSNN 332
Y GG G + +GG + R D + G GG N+
Sbjct: 180 YSGGGG--GGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNS 219
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 293 YGGGNGY 299
YGGG GY
Sbjct: 294 YGGGGGY 300
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 193 (73.0 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 71/242 (29%), Positives = 106/242 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ +++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 166 -HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + GN + V +S + G V K+FVG L D+ E DL EHF +G V
Sbjct: 74 PHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 219 DVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ K R F FV F+ D+ K+ + + I+ +V V +A PK+ +
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSGGGGGG 192
Query: 275 XXXXXXXXXXSPMSNSRQY-----GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
R GGG GY GGY Y+ + G GG
Sbjct: 193 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGY-----NSYGGYGGGG--GGYNAYGGGGGGG 245
Query: 330 SN 331
S+
Sbjct: 246 SS 247
Score = 145 (56.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFGT+E A + DK
Sbjct: 79 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADK 138
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F +H++A KA ++K H I G+R+
Sbjct: 139 QSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 173
Score = 41 (19.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
YG G G + + Q Q Y + GG SN+
Sbjct: 253 YGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNS 292
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 293 YGGGNGY 299
YGGG GY
Sbjct: 299 YGGGGGY 305
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 193 (73.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 72/235 (30%), Positives = 103/235 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ T++ L+ YFEQFG L V + RS+ FGF+ +S+ E A AM +
Sbjct: 10 LFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAAR 69
Query: 166 -HKIGNRICDV-RIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAVV--D 219
H + + +V R G E +A K+FVG L D+ E DL E F +G + +
Sbjct: 70 PHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSE 129
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXX 275
V+ K R F FV FE DS K+++ + I KV V +A K+++
Sbjct: 130 VITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAGGARGG 189
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND--YDDWHHGNGG 328
N +GGG G GGY ND Y +G+GG
Sbjct: 190 RGRGGGRGMG--RNQNGFGGGRG--GGYGGYGGGYGGGYGGNDGGYGG-SYGSGG 239
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 50/192 (26%), Positives = 72/192 (37%)
Query: 153 SSHESALKAMLKKHKIGNRICDV-RIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLRE 209
+S E+ + H + + +V R G E +A K+FVG L D+ E DL E
Sbjct: 58 TSEEADAAMAARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTE 117
Query: 210 HFEYYGAVV--DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPK 263
F +G + +V+ K R F FV FE DS K+++ + I KV V +A K
Sbjct: 118 FFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTK 177
Query: 264 KKMXXXXXXXXXXXXXXXXXXSPMSNS------RQYGG-GNGYYDNRQQQQGGYNNKRRR 316
+++ N YGG G GY GGY
Sbjct: 178 QEIQAAGGARGGRGRGGGRGMGRNQNGFGGGRGGGYGGYGGGYGGGYGGNDGGYGGSYGS 237
Query: 317 NDYDDWHHGNGG 328
Y + G G
Sbjct: 238 GGYGGGYGGGYG 249
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 193 (73.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 72/241 (29%), Positives = 105/241 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ +++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 166 -HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + GN + V +S + G V K+FVG L D+ E DL EHF +G V
Sbjct: 74 PHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 219 DVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ K R F FV F+ D+ K+ + + I+ +V V +A PK+ +
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSGGGGGG 192
Query: 275 XXXXXXXXXXSPMSNSRQY-----GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
R GGG GY GGY N Y G GG+
Sbjct: 193 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGY-----NSYGGYGGGGGYNAYGG---GGGGS 244
Query: 330 S 330
S
Sbjct: 245 S 245
Score = 145 (56.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFGT+E A + DK
Sbjct: 79 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADK 138
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F +H++A KA ++K H I G+R+
Sbjct: 139 QSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 173
Score = 38 (18.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 293 YGGGNGY 299
YGGG GY
Sbjct: 296 YGGGGGY 302
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 293 YGGGNGYYDNRQQQQGGY 310
YG G G + + Q Q Y
Sbjct: 251 YGNGFGGFGSYSQHQSSY 268
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 177 (67.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 50/160 (31%), Positives = 82/160 (51%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+FE++GTL V D T RS+ F F+ +S
Sbjct: 5 DPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCV 64
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
+ AM + H + R+ + V +S K G V K+FVG + D E +LR++
Sbjct: 65 KEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDY 123
Query: 211 FEYYGAV--VDVLIPK-PFRE-FAFVTFELDSVAKSLIGQ 246
FE YG + ++V+ + +E FVTF+ ++G+
Sbjct: 124 FEKYGKIKTMEVMEDRLSGKERLLFVTFDDHDTVDKIVGR 163
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 192 (72.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 72/249 (28%), Positives = 112/249 (44%)
Query: 107 VVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKK 165
++ G+ + TD LK E T F ++ D NT RS+GFGF+ +++ E M +
Sbjct: 17 LIRGLSFETTDESLKT-MEN--TSNFLVMR-DPNTKRSRGFGFVPYTTVEEVDATMNARP 72
Query: 166 HKIGNRICDVRIPESTKIGTEE---PVA----SKVFVGSLTPDLTESDLREHFEYYGA-- 216
HK+G R+ P+ G E+ P A KV VG + D E LR++FE+YG
Sbjct: 73 HKVGGRVVG---PKRVSCGMEKSQRPGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTE 129
Query: 217 VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXX 272
V++++ + R FAFVTF+ DSV K +I ++ + V +A K++
Sbjct: 130 VIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQERASASSS 189
Query: 273 XXXXXXXXXXXXSP---MSNSRQYG-GGN--GYYD-NRQQQQGGYNNKRRRNDY--DDWH 323
++ +G GGN G+ D GGY N + D +
Sbjct: 190 QRGRSGSGNFGGGRGGGFGSNDNFGSGGNFCGHGDFGGSHGGGGYGGGDGYNGFGNDGSN 249
Query: 324 HGNGGNSNN 332
G GGN N+
Sbjct: 250 FGGGGNDND 258
Score = 121 (47.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P+ ++V GI ++ L++YFE +G E + D+ + + +GF F+ F H+S
Sbjct: 98 PLTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVD 157
Query: 160 KAMLKK-HKIGNRICDVR 176
K +++K H + C+VR
Sbjct: 158 KIVIQKYHTVNGHNCEVR 175
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 187 (70.9 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 65/242 (26%), Positives = 105/242 (43%)
Query: 97 NSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
N+ Q D + + G+ W + DL FG + ++ D TGRS+GFGF+ F
Sbjct: 7 NANKNQQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKE 61
Query: 155 HESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEY 213
S K + LK+HK+ + + D P+ K E P KVFVG L+PD E ++E+
Sbjct: 62 AASVDKVLELKEHKLDSMLID---PKRAKALKEPP--KKVFVGGLSPDTYEEQIKEYLGA 116
Query: 214 YGAVVDVLIPKPF-----REFAFVTFELDSVAKSLI-GQHVNIKDKKVVVMEATPKKKMX 267
+G + ++ +P R F F+T+ + K L+ ++ I K + A PK+
Sbjct: 117 FGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKVAEPKE--- 173
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQ------QQQGGYNNKRRRN-DYD 320
SR +G G G N++ Q G YN+ + +Y
Sbjct: 174 IYRQQQQQQKGGRSAAAGERGGSRGHGQGQGQNWNQRFNHCYDQGNGNYNSAYGGDQNYS 233
Query: 321 DW 322
D+
Sbjct: 234 DY 235
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 191 (72.3 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 72/234 (30%), Positives = 102/234 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V G+ TD+ L+ +FEQ+G L V ++ RS+ FGF+ +SS + A AM +
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSAR 71
Query: 166 HKI--GNRICDVRIPESTKIGTEEPVAS--KVFVGSLTPDLTESDLREHFEYYGAV--VD 219
I GN + R G E +A K+F+G L D+ E LR+ F +GAV +
Sbjct: 72 PHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAE 131
Query: 220 VLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXX 275
V+ K R F FV FE DS K+++ + I KV V +A K++M
Sbjct: 132 VITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAAGSRGGG 191
Query: 276 XXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYN-NKRRRNDYDDWHHGNGG 328
+ YGG G Y N GGY N Y + G G
Sbjct: 192 RGGRGGGRGMGRPQNG-YGGRGGGYGN--YGGGGYGGNDGYGGGYGGGYGGGYG 242
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 189 (71.6 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 69/240 (28%), Positives = 104/240 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ +++ L+ +FE FGTL V V+ T RS+ FGF+ +S+ E A AM
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 166 -HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H + GN + V +S + G V K+FVG L D+ E DL EHF +G V
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 219 DVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ K R F FV F+ D+ K+ + + I+ +V V +A PK+ +
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSGGGGGG 187
Query: 275 XXXXXXXXXXSPMSNSRQYGG---GNGYYDNRQQQQGGYNNKRRRND-YDDWHHGNGGNS 330
R G G G GGY Y+ + G GG+S
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGGGGYNSYGGYGGGGGGGGGYNAYGGGGGGSS 247
Score = 145 (56.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GN+ + S D++ P + L V G+ + DL E+F QFGT+E A + DK
Sbjct: 74 GNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADK 133
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F +H++A KA ++K H I G+R+
Sbjct: 134 QSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 168
Score = 40 (19.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
YG G G + + Q Q Y + GG SN+
Sbjct: 253 YGNGFGGFGSYSQHQSSYGPMKGGGGGGGGGSSWGGRSNS 292
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 293 YGGGNGY 299
YGGG GY
Sbjct: 299 YGGGGGY 305
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 294 GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
GGG GY GG + +DY + G G S +
Sbjct: 231 GGGGGY---NAYGGGGGGSSYGGSDYGNGFGGFGSYSQH 266
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 71/259 (27%), Positives = 109/259 (42%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
SG+ + KR D P Q L + G+ + D+ L+E+F++ GTL V D T
Sbjct: 11 SGHRCHRRWKRG-ADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQT 69
Query: 142 GRSKGFGFIRFSSHESALKAMLK-KHKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
S+GFGF+ +S E AM HK+ R+ + V +S K+G V K FVG
Sbjct: 70 KCSRGFGFVTYSCVEEVDAAMCAWLHKVDGRVVEPKKAVSREDSVKLGAHLMV-KKTFVG 128
Query: 197 SLTPDLTESDLREHFEYYGAV-VDVLIPKPF--REFAFVTFELDSVAKSLIGQHVNIKDK 253
+ D E +L+++FE YG + + + + R FAF F V K ++ +H I
Sbjct: 129 GIKEDTEEYNLKDYFEKYGKIETEGMENRQSGRRGFAFAIFGDHDVDKIVVQKHHTINGH 188
Query: 254 KVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNK 313
V +A K +M M +GG GY +G +
Sbjct: 189 NCEVKKALSKLEMHSAGSQRGRGGGYGNF----MGCGGNFGGKGGYGGGGGGSRGSFGGG 244
Query: 314 RRRNDYDDWHHGNGGNSNN 332
D ++G GG+ N
Sbjct: 245 ------DGGYNGVGGDGGN 257
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 175 (66.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT S+GFG + ++A+
Sbjct: 10 PEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAME--EVDAAM 67
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPV---ASKVFVGSLTPDLTESDLREHFEYYGA 216
+ + K+G R+ + + S + V K+FVG + D E LR++FE YG
Sbjct: 68 NS--RPCKVGRRVLEPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 125
Query: 217 --VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
V++ + + R FAFVTF+ DSV K +I ++ VV + K++M
Sbjct: 126 IEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHAANGHNRVVRKTLWKQEM 181
Score = 51 (23.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 289 NSRQYGGGNGYYDNRQQQQGGYNNKR 314
+S YGGG+ Y+ + Q QGG R
Sbjct: 280 SSGPYGGGDQYFA-KPQNQGGCGGSR 304
Score = 39 (18.8 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
+ SR GG G D + +N Y+D+ + N +SN
Sbjct: 224 AGSRGGGGSGGSGDGYNEFGNDGSNFGGGRSYNDFGNYNNQSSN 267
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 181 (68.8 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 62/233 (26%), Positives = 99/233 (42%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + TD+ L+E+FE++GTL D RS+GFGF+ +S E A+ +
Sbjct: 4 LFIGGLSFETTDDSLREHFEKWGTL------TDCGNKRSRGFGFLTYSCVEEVDAAVCAR 57
Query: 166 -HKIGNRICDVRI---PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--VD 219
HK R+ R +S K G V K++VG + D E +LR +F+ YG + ++
Sbjct: 58 PHKAAVRVVGKRAVSREDSVKPGAHLMV-KKLYVGGIKEDTEEYNLRGYFKKYGKIETIE 116
Query: 220 VLIPKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXX 276
V+ + R FAFVTF+ ++ +H I V + K+
Sbjct: 117 VMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEVGKVLSKEMQSAGSQRGRGG 176
Query: 277 XXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGN 329
R +GG GY +G Y N D+ G+ G+
Sbjct: 177 ASGNFMGRGGNFGGRNFGGRGGYGGGGGGSRGSYGG----NGGDNGFGGDAGS 225
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 183 (69.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/242 (25%), Positives = 102/242 (42%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ P + L + G+ + D L +FE ++V NT S+GFGF+
Sbjct: 3 SKSPEELRKLFIRGLSFETIDESLSSHFEMGKAHRLVVMRVP-NTKHSRGFGFVTKPWWR 61
Query: 157 SALKAMLKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFE 212
S + HK+ R+ + + + ++ ++ P A K+FVG + E LR +FE
Sbjct: 62 SLAAMNARPHKVDERVVEPK-RDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFE 120
Query: 213 YYGAV-VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMX 267
YG + ++++ + R FAF TF+ DSV K +I ++ + V EA K++M
Sbjct: 121 QYGKIDIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREALSKQEMA 180
Query: 268 XXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHH-GN 326
R YG G Y N Q GY YD +++ G+
Sbjct: 181 SASSSGGGYGGSGDGYNGFGKKHRGYGSGGQGYGN---QGSGYGGS---GSYDSYNNCGS 234
Query: 327 GG 328
GG
Sbjct: 235 GG 236
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 189 (71.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 58/222 (26%), Positives = 103/222 (46%)
Query: 92 RSYPDN--SGPVQNTDLVVLGIPWTFTDNDL-KEYFEQFGTLEFANVKVDKNTGRSKGFG 148
RS DN SG + + +G T N + ++F ++G + + + D++TG+ +GFG
Sbjct: 4 RSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63
Query: 149 FIRFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASK-VFVGSLTPDLTES 205
FI F+ K + H I + +++ IP+ + + +K +FVG + +TE
Sbjct: 64 FITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTED 123
Query: 206 DLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLI--GQHVNIKDKKVVVM 258
+L++ F YG VV+ + + R F FV F+ + V L+ G +++ D +V +
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIK 183
Query: 259 EATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYY 300
+A PKK + S S YGG +G Y
Sbjct: 184 KAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGY 225
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDL-----VVLGIPWTFTDNDLKEYFEQFGTLEFANVKVD 138
N + KR+ P +G Q+ D+ V GIP T T+++LK++F ++G + V D
Sbjct: 84 NGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
Query: 139 KNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRI 172
T RS+GFGF+ F S E + +L K GN I
Sbjct: 144 HETNRSRGFGFVIFDSEE-VVDELLSK---GNMI 173
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 186 (70.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 70/239 (29%), Positives = 107/239 (44%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL ++ D N S+GFGF+ +++ E
Sbjct: 10 PEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCVMR-DPNNKISRGFGFVTYTTVEELD 68
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ + + V +S + G V K+FVG + D TE HFE Y
Sbjct: 69 AAMNARPHKVDGGVVEPKRAVSREDSPRPGAHLTV-KKIFVG-VKED-TEG---HHFEQY 122
Query: 215 GA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G V++++ + R FAFVTF+ DSV +I ++ + V +A +++
Sbjct: 123 GKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSNQELAS 182
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
SR YG G GY Q GY R YD ++ G G
Sbjct: 183 ASSSQRGCSPGYS------GGSRGYGSGQGY----GTQGSGYGG---RGSYDSYNDGGG 228
Score = 108 (43.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+ + KR+ P L V I ++ +FEQ+G +E + D+ +G+
Sbjct: 79 DGGVVEPKRAVSREDSPRPGAHLTVKKIFVGVKEDTEGHHFEQYGKIEVIEIMTDRGSGK 138
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR 176
+GF F+ F +S +++K H + C+VR
Sbjct: 139 KRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVR 172
Score = 93 (37.8 bits), Expect = 0.00059, Sum P(2) = 0.00058
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 185 TEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----FREFAFVTF----E 235
T+EP K+F+G L+ T+ LR HFE +G + D ++ P R F FVT+ E
Sbjct: 7 TKEPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCVMRDPNNKISRGFGFVTYTTVEE 66
Query: 236 LDSVAKSLIGQHVN---IKDKKVVVMEATPK 263
LD+ A + V+ ++ K+ V E +P+
Sbjct: 67 LDA-AMNARPHKVDGGVVEPKRAVSREDSPR 96
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 290 SRQYGGGNGYYDNRQQQQGGYNNKRRRNDY 319
S YGGG G Y + + QGGY R + Y
Sbjct: 272 SGPYGGG-GQYFAKPRNQGGYGGSSRSSSY 300
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 178 (67.7 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 58/214 (27%), Positives = 92/214 (42%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + TD+ L+E+FE++GTL D RS+GFGF+ +S E A+ +
Sbjct: 34 LFIGGLSFETTDDSLREHFEKWGTL------TDCGNKRSRGFGFLTYSCVEEVDAAVCAR 87
Query: 166 -HKIGNRICDVRI---PESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--VD 219
HK R+ R +S K G V K++VG + D E +LR +F+ YG + ++
Sbjct: 88 PHKAAVRVVGKRAVSREDSVKPGAHLMV-KKLYVGGIKEDTEEYNLRGYFKKYGKIETIE 146
Query: 220 VLIPKPF---REFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXX 276
V+ + R FAFVTF+ ++ +H I V + K+
Sbjct: 147 VMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEVGKVLSKEMQSAGSQRGRGG 206
Query: 277 XXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGY 310
R +GG GY +G Y
Sbjct: 207 ASGNFMGRGGNFGGRNFGGRGGYGGGGGGSRGSY 240
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 187 (70.9 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIP 178
L+EYF QFG ++ V D T RS+GFGF+ F K + + +H++ ++ D ++
Sbjct: 3 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 179 ESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFV 232
+ + +K +FVG L+ + T D++ +FE +G V D ++ R F FV
Sbjct: 63 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 122
Query: 233 TFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
TFE + + + + H + I +K V +A PK+ M
Sbjct: 123 TFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVM 157
Score = 131 (51.2 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K YFEQFG ++ A + DK
Sbjct: 53 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 112
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 113 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 149
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 165 (63.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 47/152 (30%), Positives = 83/152 (54%)
Query: 126 QFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIG 184
++G L V D NT S+GF F+ +++ E AM ++ HK+ R+ +++ S +
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSRE-D 60
Query: 185 TEEPVA----SKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE 235
++ P A K+FVG + D + LR++FE+YG V++++ + R FAFVTF+
Sbjct: 61 SQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFD 120
Query: 236 L-DSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
DSV K +I ++ + V +A K++M
Sbjct: 121 AHDSVDKIVIQKYHTVNGHNCEVRKALLKQEM 152
Score = 123 (48.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI + L++YFE +G +E + D+ +G + F F+ F +H+S K +++K
Sbjct: 73 IFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQK 132
Query: 166 -HKIGNRICDVR 176
H + C+VR
Sbjct: 133 YHTVNGHNCEVR 144
Score = 61 (26.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 289 NSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
+S YGGG G Y + Q QGGY + + +G+GG
Sbjct: 292 SSGSYGGG-GQYFAKPQNQGGYGSSSSSSSSS---YGSGG 327
Score = 58 (25.5 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 290 SRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
SR YG G Y N Q GY YD +++G GG
Sbjct: 218 SRGYGSGGQGYGN---QGSGYGGS---GSYDSYNNGGGG 250
Score = 52 (23.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 295 GGNGYYD--NRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
GG+G YD N GGY N + N GN NN
Sbjct: 236 GGSGSYDSYNNGGGGGGYGGASGSNFGGGRSYNNFGNYNN 275
Score = 41 (19.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 294 GGGNGYYDNRQQQQGG---YNN-KRRRNDYDDWHHGNGGN 329
GGG GY GG YNN N ++ GGN
Sbjct: 248 GGGGGYGGASGSNFGGGRSYNNFGNYNNQSSNFGAMKGGN 287
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 169 (64.5 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD+ L+E+F+ + TL V D T RS+GFGF+ +S
Sbjct: 5 DPKEPEQRRKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV-YSCV 62
Query: 156 ESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREH 210
E AM + HK+ + + + +S K G V K+FVG + D E +LR++
Sbjct: 63 EEVDAAMCARPHKVDGHVVEPKRAISREDSVKPGAHLMV-KKIFVGGIKEDTEEYNLRDY 121
Query: 211 FEYYGA-VVDVLIPKPF---REFAFVTFELDSVAKSLIGQ 246
FEY ++V+ + R FAF+TF+ ++G+
Sbjct: 122 FEYGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIVGR 161
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 185 (70.2 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 73/254 (28%), Positives = 113/254 (44%)
Query: 89 QSKRSYPDNSGPVQNTDLVVL---GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+S + P ++N+ L L G+ T+ L+E+F +GTL V ++ T RS+
Sbjct: 10 RSLSARPRRGTGMENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSR 69
Query: 146 GFGFIRFSSHESALKAMLKK-HKI-GNRI---CDVRIPESTKIGTEEPVASKVFVGSLTP 200
FGF+ +S+ E A AM H + GN + V +S K G V K+FVG L
Sbjct: 70 CFGFVTYSAVEEADAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKV-KKLFVGGLKG 128
Query: 201 DLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFEL-DSVAKSLIGQHVNIKDKK 254
D+ E DL +HF +G V +++ K R F FV F+ D+ K+ + + I+ +
Sbjct: 129 DVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 188
Query: 255 VVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKR 314
V V +A PK+ + R GGG+G D+ +GG
Sbjct: 189 VEVKKAVPKEDIQAGGGGSARPSRGGRGG----GRGRG-GGGSGNRDHNGLSKGGGGY-- 241
Query: 315 RRNDYDDWHHGNGG 328
N Y + G GG
Sbjct: 242 --NSYGGYGGGGGG 253
Score = 138 (53.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 83 GNSSATQSKRSYPDNSGPVQNTD---LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
GNS + S D++ P + L V G+ + DL ++F QFG +E A + DK
Sbjct: 95 GNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADK 154
Query: 140 NTGRSKGFGFIRFSSHESALKA-MLKKHKI-GNRI 172
+G+ +GFGF+ F +H++A KA ++K H I G+R+
Sbjct: 155 QSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 189
Score = 49 (22.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 294 GGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
GGG G Y N G Y+ + ++ Y G GG
Sbjct: 266 GGGGGDYGNGYGGFGSYS--QHQSSYGPMKSGGGG 298
Score = 42 (19.8 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGN-GGNSNN 332
YG G G + + Q Q Y + GN GG SN+
Sbjct: 272 YGNGYGGFGSYSQHQSSYGPMKSGGG-GGGGGGNWGGRSNS 311
Score = 41 (19.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 286 PMSNSRQYGGGNGYYDNRQQQ---QGGY 310
PM + GGG G + R +GGY
Sbjct: 291 PMKSGGGGGGGGGNWGGRSNSGPYRGGY 318
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 185 (70.2 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 120 LKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK-KHKIGNRICDVRIP 178
L+EYF QFG + V D T RS+GFGF+ F K + + +H++ ++ D ++
Sbjct: 3 LREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 179 ESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLI-----PKPFREFAFV 232
+ + +K +FVG L+ + T D++++FE +G V D ++ R F FV
Sbjct: 63 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 122
Query: 233 TFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKM 266
TFE + + + + H + I +K V +A PK+ M
Sbjct: 123 TFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVM 157
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 84 NSSATQSKRSYPDNSGP--VQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+S K ++P + P V T + +G + T D+K+YFEQFG ++ A + DK
Sbjct: 53 DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 112
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
T R +GFGF+ F S + K + H+I N++ + +
Sbjct: 113 TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 149
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 147 (56.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 95 PDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
P + G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F S
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Query: 155 HESALKAMLKK-HKIGNRICDVR--IPE--STKIGTEEPVASKVFVG 196
++ + + K H++ ++ +V+ +P+ S P+AS V G
Sbjct: 161 DDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG 207
Score = 119 (46.9 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 36/134 (26%), Positives = 61/134 (45%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDSVAKSLIG 245
K+FVG L +TE + + +F+ +G + DV++ +P R F F+TF+ D ++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSDDAVDRVLH 169
Query: 246 QHVN-IKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGG------NG 298
+ + + K V V A PK+ SP+++ YGGG N
Sbjct: 170 KTFHELNGKLVEVKRAVPKE------------ISPVSNIRSPLASGVNYGGGSNRMPANS 217
Query: 299 YYDNRQQQQGGYNN 312
Y++N G YN+
Sbjct: 218 YFNNFAPGPGFYNS 231
Score = 114 (45.2 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L++YF +G + A + D+ TGR++GFGFI F+ + + ++ K
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 166 HKIGNRICDVR 176
H I R + +
Sbjct: 68 HIIDGRTVEAK 78
Score = 39 (18.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 293 YGGGNGYYDNRQQQQ 307
Y GG+ Y D+ QQQ
Sbjct: 381 YRGGSVYSDSTWQQQ 395
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 183 (69.5 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 70/252 (27%), Positives = 109/252 (43%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
KR +N Q L + G+ T+ LK Y++Q+G L V + +S+GFGF+
Sbjct: 11 KREKKENE---QIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFV 67
Query: 151 RFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTES 205
FSS AM + H I R+ D V +S K G+ V K+FVG + D E
Sbjct: 68 TFSSVAEVDAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLVNV-KKLFVGGIKEDTEEH 126
Query: 206 DLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVME 259
LRE+FE YG + ++++ + R F FVTF+ D V K ++ ++ I + V +
Sbjct: 127 HLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGK 186
Query: 260 ATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY 319
A +++M S + +G G G + + GY N D
Sbjct: 187 ALSRQEMKEIQGPRSRKGGPFGFSVSS-NGGGNFGRGPG--TKFRGEADGYGNGPESRDG 243
Query: 320 DDWHHGNGGNSN 331
+ G G N
Sbjct: 244 CHGYGGGPGGGN 255
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 117 (46.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI ++ LK+YF ++G + A V +K TG+ +GFGF+RF++ +KA+
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 166 HKIGNRICDVR 176
H I + DVR
Sbjct: 68 HFILGKPVDVR 78
Score = 112 (44.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP------KPFREFAFVTFEL-DSVAKSLI 244
K+FVG L+ + TE + + +FE +G DV++ +P R F FVT++ DSV +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP-RGFGFVTYDSEDSVEVVMQ 179
Query: 245 GQHVNIKDKKVVVMEATPKK 264
+ DK+V V A PK+
Sbjct: 180 SNFHELSDKRVEVKRAIPKE 199
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
S+ N G + + V G+P + T+ + K YF+QFGT+ V D NT R +GFGFI F
Sbjct: 111 SHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 170
Query: 153 SSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEP 188
S ES + K H++ ++ +V+ ++ + P
Sbjct: 171 DSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTP 207
Score = 127 (49.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + GI W + L+EYF ++G L A + D+ TGR++GFGFI F+ A + ++ K
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 166 HKIGNRICDVR 176
H I R + +
Sbjct: 77 HIIDGRTVEAK 87
Score = 104 (41.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELD-SVAKSLI 244
K+FVG L +TE++ + +F+ +G + DV++ +P R F F+TF+ + SV L
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSEESVDMVLH 181
Query: 245 GQHVNIKDKKVVVMEATPKK 264
+ K V V A PK+
Sbjct: 182 KTFHELNGKMVEVKRAVPKE 201
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 171 (65.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 53/165 (32%), Positives = 83/165 (50%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
D P Q L + G+ + TD L+E+FE++GTL V D S+GF F+ +S
Sbjct: 29 DPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCV 88
Query: 156 ESALKAMLKK-HKIGNRICDVRIP---ESTKIGTEEPVASKVFVGSLTPDLTESDLREHF 211
E M + HK+ + + + E + I + K+FVG + D E +LR++F
Sbjct: 89 EEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYF 148
Query: 212 EYYGAV--VDVLIPKPF---REFAFVTFEL-DSVAKSLIGQH-VN 249
E YG + ++V+ + R FAFVTF+ D+V K + H VN
Sbjct: 149 EKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYHTVN 193
Score = 135 (52.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI + +L++YFE++G +E V D+ +G+ +GF F+ F +H++ K + K
Sbjct: 130 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKY 189
Query: 166 HKIGNRICDVRIPESTKIGTE 186
H + C+V+ E G++
Sbjct: 190 HTVNGHNCEVKEQEMPSAGSQ 210
Score = 44 (20.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
+GG G+ R +GGY D G GG
Sbjct: 254 FGGDAGHGGRRGYSRGGYGGGGPGYGNQDGGSGGGG 289
Score = 42 (19.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 286 PMSNS-RQYGGGNGYYDNRQQQ---QGGYNNKR--RRNDY---DDWHHGNGGNSNN 332
P + S R +GGG+G + R +GGY R Y D +G GG++ +
Sbjct: 205 PSAGSQRGHGGGSGNFMGRGGNFGGRGGYGGGGGGSRGSYGGGDGGFNGFGGDAGH 260
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 60/202 (29%), Positives = 93/202 (46%)
Query: 141 TGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFV 195
T RS+GFGF+ +S E M + HK+ R+ + + S + ++ P A K+FV
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSRE-DSQRPDAHLTVKKIFV 59
Query: 196 GSLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVN 249
GS+ D E LR++FE YG + ++++ + R FAFVTF+ DSV K + ++
Sbjct: 60 GSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHT 119
Query: 250 IKDK-KVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQG 308
+ K V + K++M P SR YG G N Q
Sbjct: 120 VNGHHKCEVRKPLSKQEMASASFSQRGRNGSRTGY--P-GGSRGYGSGGQDCGN---QGS 173
Query: 309 GYNNKRRRNDYDDWHHGNGGNS 330
GY YD +++G GG+S
Sbjct: 174 GYGGS---GSYDSYNNGGGGSS 192
Score = 127 (49.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK-HKI-GNRICD 174
++ L++YFEQ+G +E + D+ + + +GF F+ F H+S K + +K H + G+ C+
Sbjct: 68 EHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTVNGHHKCE 127
Query: 175 VRIPES 180
VR P S
Sbjct: 128 VRKPLS 133
Score = 55 (24.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 291 RQYGGGNGY-----YDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNAT 334
R +GGG Y Y+N +GG N R + +D G GG+S++++
Sbjct: 199 RNFGGGGSYSDFGNYNNFGPMKGG-NFGARSSGPNDGGGGYGGSSSSSS 246
Score = 43 (20.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 295 GGNGYYDNRQQQQGG--YNNKRRRN-----DYDDWHHGN------GGNSNNATVSPD 338
GG+G YD+ GG + + RRN Y D+ + N GGN + P+
Sbjct: 176 GGSGSYDSYNNGGGGSSFGSGSRRNFGGGGSYSDFGNYNNFGPMKGGNFGARSSGPN 232
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 173 (66.0 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 63/245 (25%), Positives = 110/245 (44%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + L + G+ + +D+ L+E+FEQ+ L V +D T RS+ FGF+ +S + A
Sbjct: 11 QLSKLFIGGLSFETSDDSLREHFEQWDMLTHC-VVMDPQTKRSRVFGFVTYSCVKEVDAA 69
Query: 162 MLKK-HKIGNRICDVRIPESTKIGTEEPV----ASKVFVGSLTPDLTESDLREHFEYYGA 216
M + HK+ + + + P + + +PV A K+F+G + D E +LR++FE YG
Sbjct: 70 MCARPHKVDGCVVEPKRP--FREDSVKPVVCLLAKKIFIGGIKEDTEEHNLRDYFEKYGK 127
Query: 217 VVDVLIPKPFRE------FAFVTFELDSVAKSLIGQHVN-IKDKKVVVMEATPKKKMXXX 269
+ + I + R+ FAFVTF+ ++ Q + I V +A K++M
Sbjct: 128 IETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKKAPSKQEMPSV 187
Query: 270 XXXX--XXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
+ R+ G G + R GG ++ D ++G G
Sbjct: 188 RSQRCRGGRSSNFMGRGGNFGHGRRNFGHGGNFGGRGGGSGG--SRGSYGGGDGRYNGFG 245
Query: 328 GNSNN 332
G+ N
Sbjct: 246 GDGCN 250
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 179 (68.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 67/237 (28%), Positives = 104/237 (43%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ + T+ L++Y++Q+G L V D + RS+G GF+ FSS AM +
Sbjct: 11 LFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAAR 70
Query: 166 -HKIGNRICDVR--IPE--STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV--V 218
H I R+ + R IP S + G + K+FVG + D E LRE+FE YG + +
Sbjct: 71 PHSIDGRVLEPRRAIPREASGQRGAHWTL-KKLFVGGIKEDTEEHHLREYFEKYGKIDAI 129
Query: 219 DVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXX 274
+++ + R F FVTF+ D V K ++ ++ I V +A +M
Sbjct: 130 EIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEMQQVQGSRS 189
Query: 275 XXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
S S +G G G + + GY N R D + G G N
Sbjct: 190 RKRDPFDFSVSS-SWGGNFGRGPG--TKFRGEADGYGNGPRSRDSCQGYGGGPGGGN 243
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 114 (45.2 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELDS 238
TE ++K+FVG + + E++L+E+F +G V +V++ +P R F F+TFE +
Sbjct: 108 TENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQ 166
Query: 239 VAKSLIGQHVN-IKDKKVVVMEATPK 263
+ H + I KKV V A P+
Sbjct: 167 SVDQAVNMHFHDIMGKKVEVKRAEPR 192
Score = 112 (44.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+N G + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAMLKK-HKIGNRICD 174
+ + H + R D
Sbjct: 62 NCVGTVLASRPHTLDGRNID 81
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 160 (61.4 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 57/178 (32%), Positives = 88/178 (49%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + ++ L+E FE GTL V D + FGF+ +S E
Sbjct: 3 PEQLRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRDPQS-----FGFVTYSCVEEVD 56
Query: 160 KAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + V +S K G V K+FVG + D E +LR++FE Y
Sbjct: 57 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV--KIFVGGIKEDAEEYNLRDYFEKY 114
Query: 215 GAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
G + ++V+ + R FAFVTF+ D+V K ++ H I V +A K++M
Sbjct: 115 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVNYHT-INGHNCEVRKALSKQEM 171
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 177 (67.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 72/261 (27%), Positives = 114/261 (43%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ TD L+ + EQ G L V D NT S+GFGF
Sbjct: 2 SKSESPKE--PEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTE 204
+++ E M + HK+ R+ + V +S + G V K+FVG + D E
Sbjct: 60 TTYATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEE 118
Query: 205 SDLREHF-EYYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQ-H-VNIKDKKV 255
L+++F E Y V++++ + R FAFVTF+ D V K +I + H VN D +V
Sbjct: 119 HHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEV 178
Query: 256 VVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGY-YDNRQQQQGGYNNKR 314
+A K++M +GG + + + +GG++ R
Sbjct: 179 --RKALSKQEMASASSSQRSRSGSGNFGGG---RGGGFGGNDNFGHGGNFSGRGGFSGSR 233
Query: 315 RRNDYD---DWHHGNGGNSNN 332
Y D ++G G + +N
Sbjct: 234 GGGGYGSSGDGYNGFGNDGSN 254
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 178 (67.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 63/221 (28%), Positives = 98/221 (44%)
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICDV 175
+ L+ Y++Q+G L V D ++ RS+GFGF+ FSS AM + H I R+
Sbjct: 34 EESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVAS 93
Query: 176 R--IP--ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV-LIPKPFRE-- 228
+ +P ES K G K+FVG + D TE LR++FE YG + + +I + R+
Sbjct: 94 KRVVPREESGKPGACV-TTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 229 FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPM 287
F FVTF+ D V K ++ ++ I + +A ++ M P
Sbjct: 153 FGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRGRGRHVGFGDIPS 212
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
GGGN + +GG R D ++ GG
Sbjct: 213 GGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDGYYEYGG 253
Score = 117 (46.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 90 SKRSYP-DNSG-P---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
SKR P + SG P V L V GI T+ L++YFE++GT++ +++ + +GR
Sbjct: 93 SKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDA--IEIIRQSGRK 150
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASK 192
FGF+ F H+ K +L+K H I + S + G +E +S+
Sbjct: 151 TAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQ-GMQEVQSSR 198
Score = 49 (22.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSP 337
YGGG+ Y + G YN ++Y +GN G S + V+P
Sbjct: 291 YGGGD-YGEGNYNAFGNYNQDP--SNYGPVKNGNFGESRHM-VAP 331
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRR--NDYDDWHHGNGGNSN-NA 333
+GG GY + GY+N + Y ++ G+ G N NA
Sbjct: 260 FGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGEGNYNA 303
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 178 (67.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 63/221 (28%), Positives = 98/221 (44%)
Query: 117 DNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICDV 175
+ L+ Y++Q+G L V D ++ RS+GFGF+ FSS AM + H I R+
Sbjct: 34 EESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVAS 93
Query: 176 R--IP--ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDV-LIPKPFRE-- 228
+ +P ES K G K+FVG + D TE LR++FE YG + + +I + R+
Sbjct: 94 KRVVPREESGKPGACV-TTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 229 FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPM 287
F FVTF+ D V K ++ ++ I + +A ++ M P
Sbjct: 153 FGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGDIPS 212
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGG 328
GGGN + +GG R D ++ GG
Sbjct: 213 GGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDGYYEYGG 253
Score = 117 (46.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 90 SKRSYP-DNSG-P---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
SKR P + SG P V L V GI T+ L++YFE++GT++ +++ + +GR
Sbjct: 93 SKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDA--IEIIRQSGRK 150
Query: 145 KGFGFIRFSSHESALKAMLKK-HKIGNRICDVRIPESTKIGTEEPVASK 192
FGF+ F H+ K +L+K H I + S + G +E +S+
Sbjct: 151 TAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQ-GMQEVQSSR 198
Score = 49 (22.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSP 337
YGGG+ Y + G YN ++Y +GN G S + V+P
Sbjct: 291 YGGGD-YGEGNYNAFGNYNQDP--SNYGPVKNGNFGESRHM-VAP 331
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRR--NDYDDWHHGNGGNSN-NA 333
+GG GY + GY+N + Y ++ G+ G N NA
Sbjct: 260 FGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGEGNYNA 303
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 174 (66.3 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 50/169 (29%), Positives = 85/169 (50%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTL-EFANVKVDKNTGRSKGFGFIRFSSHESALKAMLK 164
+ V G+ T ++ LK+YF FG + E +K + +S+GFGF+ F + +L
Sbjct: 108 IFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVILI 167
Query: 165 KHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD--V 220
H I + ++R IP+ TEEP K+FVG L +T D +F +G + + +
Sbjct: 168 NHSIEGKNVEIRRAIPKEEM--TEEPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNL 225
Query: 221 LIPK--PFREFAFVTFELDSVAKSLIG--QHVNIKDKKVVVMEATPKKK 265
L K + F F+ F+ +SV + ++ QH+ I K+V + A + K
Sbjct: 226 LTEKNGTIKGFGFICFKDESVNEIILNEQQHI-ILGKRVDIRIADSQNK 273
Score = 51 (23.0 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 285 SPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSPDVLQAVV 344
S ++S +Y + YY+N NN N+ ++ N N+ +S +
Sbjct: 476 SSTTSSSKYYQSSKYYNNNNTNINNNNNNNNNNN----NNNNNNKINDFQISSSI-PPTY 530
Query: 345 SKAVSEVLNVQKAIDESKY 363
S ++ N+Q + Y
Sbjct: 531 SNSIHNNNNIQTSSSSYYY 549
Score = 49 (22.3 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 303 RQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+ QQ NN N+ + ++ N N+NN
Sbjct: 614 KHQQNNNINNNNNNNNNNINNNNNNNNNNN 643
Score = 43 (20.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVSPDVLQAVVSKA 347
S S + YY + + NN N+ ++ ++ N N+NN ++ + + +
Sbjct: 473 STSSSTTSSSKYYQSSKYYN---NNNTNINNNNNNNNNNNNNNNNNKINDFQISSSIPPT 529
Query: 348 VSEVLNVQKAIDES 361
S ++ I S
Sbjct: 530 YSNSIHNNNNIQTS 543
Score = 40 (19.1 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 288 SNSRQYGGGNGYY----DNRQQQQGGYNNKRRRNDYDDWH 323
+N+ Q + YY +N Q GY+N R++ Y H
Sbjct: 537 NNNIQTSSSSYYYPIITNNSVYPQLGYSNYGRQSYYPQQH 576
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 178 (67.7 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 46/135 (34%), Positives = 71/135 (52%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + GI W + LKEYF FG + A + D+ TGR++GFGF+ F+ A +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 163 LKKHKIGNRICDVR--IPE----------STKI-GTEE-PVAS-KVFVGSLTPDLTESDL 207
+KH I R+ + + +P S+ I G+ P + K+FVG L +TESD
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 208 REHFEYYGAVVDVLI 222
+ +FE +G DV++
Sbjct: 125 KTYFEQFGTTTDVVV 139
Score = 165 (63.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
N S + S + P GP + + V G+P + T++D K YFEQFGT V D NT R
Sbjct: 90 NRSNSSSIQGSP--GGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 144 SKGFGFIRFSSHESALKAMLKK-HKIGNRICDVR--IPESTKIG-TEEPVAS 191
+GFGFI + S E+ K +LK H++ ++ +V+ +P+ G + P+ +
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGA 199
Score = 115 (45.5 bits), Expect = 0.00092, P = 0.00092
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI------PKPFREFAFVTFELD-SVAKSLI 244
K+FVG L +TESD + +FE +G DV++ +P R F F+T++ + +V K L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLL 167
Query: 245 GQHVNIKDKKVVVMEATPKK 264
+ K V V A PK+
Sbjct: 168 KTFHELNGKMVEVKRAVPKE 187
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 168 (64.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 65/257 (25%), Positives = 106/257 (41%)
Query: 87 ATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
A SK + P + L + G+ + D L +FE ++V NT S+G
Sbjct: 11 AVMSKSE--SSKSPEELRKLFIRGLSFETIDESLSSHFEMGKAHRLVVMRVP-NTKHSRG 67
Query: 147 FGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDL 202
FGF+ S + HK+ R+ + + + ++ ++ P A K+FVG +
Sbjct: 68 FGFVTKPWWRSLAAMNARPHKVDERVVEPK-RDVSRGDSQRPHAHLTVKKIFVGGIQEGT 126
Query: 203 TESDLREHFEYYGAV-VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVV 257
E LR +FE YG + ++++ + R FAF TF+ DSV K +I ++ + V
Sbjct: 127 EEHHLRNNFEQYGKIDIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEV 186
Query: 258 MEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYD--NRQQQQGGYNNKRR 315
EA K++M + YGG +G YD N GG+
Sbjct: 187 REALSKQEMASASSRKHRGYGSGGQGYGNQGSG--YGG-SGSYDSYNNCGSGGGFGGGSG 243
Query: 316 RNDYDDWHHGNGGNSNN 332
N G GG+ N+
Sbjct: 244 SN------FGGGGSYND 254
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 171 (65.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 64/245 (26%), Positives = 108/245 (44%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ + + V D NT S+GF F+ +++ E
Sbjct: 10 PGQLRKLFIGGLSFETTDESLRSHCSHSPSC----VMTDPNTKCSRGFRFVTYATVEEVD 65
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + + S + G++ P A K+F G + D E LR++FE
Sbjct: 66 AAMNARPHKVDRRVVEPKRGVSRE-GSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENN 124
Query: 215 GA--VVDVLI-PKPFRE--FAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
G V++++ P ++ FAFVTF+ DSV K++I ++ + V +A K++M
Sbjct: 125 GKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKALSKQEMAS 184
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYG-GGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
R G GGN + + GG R D ++G G
Sbjct: 185 ASSSQRGRSGSGN-----FGGGRGGGFGGNENFGHGGNGSGGSRGGGRYGGGGDGYNGFG 239
Query: 328 GNSNN 332
+ +N
Sbjct: 240 NDGSN 244
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI ++ L++YFEQ+G +E + D+ +G+ +GF F+ F H+S K +++K
Sbjct: 58 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 117
Query: 166 -HKIGNRICDVR 176
H + C+VR
Sbjct: 118 YHTVNGHNCEVR 129
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 179 ESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVT 233
+S + G V K+FVG + D E LR++FE YG V++++ + R FAFVT
Sbjct: 45 DSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 103
Query: 234 FE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
F+ DSV K +I ++ + V +A K++M
Sbjct: 104 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 137
Score = 64 (27.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTL 130
SK P P Q L + G+ + TD L+ +FEQ+GTL
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 153 (58.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKHKI 168
G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K+HK+
Sbjct: 84 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 143
Query: 169 GNRICD 174
++ D
Sbjct: 144 NGKVID 149
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 151 (58.2 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 31/117 (26%), Positives = 64/117 (54%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
++ + + G+ W + + L++YF +FG + V D T RS+GFGF+ F+ S K +
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 163 LKKH-KIGNRICDVRIPESTKIGTEEPVASK-VFVGSLTPDLTESDLREHFEYYGAV 217
+ H ++ ++ D ++ + + +K +FVG L+ + D++++FE +G V
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 132
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 159 (61.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T L+ +FE++GT V D NT RS+ GF+ +++ E
Sbjct: 19 PEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVD 78
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + K+ R+ V +S + GT+ V K+F G + D E ++R++FE+Y
Sbjct: 79 AAMNARPQKMDGRLVKPKRAVSREDSQRPGTQLTV-KKIFEGGIKEDTEEHNVRDYFEHY 137
Query: 215 GAV--VDVLIPKPF--REFAFVTFE-LDSVAKSLIGQHVNIKDKKV 255
G + ++++ + +EFA V + DSV K I ++ + V
Sbjct: 138 GKIDMIEIMTDRSSGKKEFALVPLDDHDSVDKIAIQKYHTVNGTTV 183
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 175 (66.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 52/174 (29%), Positives = 84/174 (48%)
Query: 88 TQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
T + +Y + N + V +P + ++ L+E FE++G + NV DK TG SKG
Sbjct: 341 TDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGC 400
Query: 148 GFIRFSSHESALKAMLKKHKIGNRICDVRIPESTK-IGTEEPVASKVFVGSLTPDLTESD 206
F+ F + +ALKA H + + + P K +E K+FVG L L E+D
Sbjct: 401 CFVTFYTRHAALKAQDALHNV-KTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNEND 459
Query: 207 LREHFEYYGAVVDVLIPKP----FREFAFVTFELDSVAKSLIGQHVNIKDKKVV 256
+R+ FE +GA+ + + + + AFVTF A S I V + K++
Sbjct: 460 VRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAI--KVTLSQNKIM 511
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
AS SA + + GP + +L + +P FTD DL F FG + A V +DK
Sbjct: 704 ASVALSAAAAAAAGKQIEGP-EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ 762
Query: 141 TGRSKGFGFIRFSSHESA---LKAMLKKHKIGNRICDVRI--PESTK 182
T SK FGF+ F + +SA +KAM ++G + V++ P+ +K
Sbjct: 763 TSLSKCFGFVSFDNPDSAQVAIKAM-NGFQVGTKRLKVQLKKPKDSK 808
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 150 (57.9 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 138 DKNTGRSKGFGFIRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASK 192
D NT RS+GFGF+ +++ E AM + HK+ R+ + V +S + G V K
Sbjct: 3 DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KK 61
Query: 193 VFVGSLTPDLTESDLREHFEYYGA--VVDVLIPKPF---REFAFVTFE 235
+FVG + D E LR++FE YG V++++ + R FAFVTF+
Sbjct: 62 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 109
Score = 110 (43.8 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
+ V GI ++ L++YFEQ+G +E + D+ +G+ +GF F+ F H+S
Sbjct: 62 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 113
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 169 (64.5 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 55/259 (21%), Positives = 105/259 (40%)
Query: 92 RSYPDNSGPVQNTDLVVLG-IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
+S P + G V + + +G + T + ++F ++G + + + D+ TG+ +GFGF+
Sbjct: 29 KSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88
Query: 151 RFSSHESALKAMLKKHKIGNRICDVR--IPESTKIGTEEPVASKVFVGSLTPDLTESDLR 208
++ K + H I + +++ IP + + + + K+FVG + + + + +
Sbjct: 89 TYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGS-MSSNDFKTKKIFVGGIPSSVDDDEFK 147
Query: 209 EHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLI--GQHVNIKDKKVVVMEAT 261
E F +G + + I + R F FVT+E + + L+ G + + +V + +A
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Query: 262 PKKKMXXXXXXXXXXXXXXXXXXSPMSN-SRQYGGGNGYYDNRQQQQGGYNNKRRRN--D 318
PKK +GGG G + GGY R
Sbjct: 208 PKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGG 267
Query: 319 YDDWHHGNGGNSNNATVSP 337
Y G GG V P
Sbjct: 268 YGGEFGGYGGGGYGGGVGP 286
Score = 131 (51.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 91 KRSYPD---NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGF 147
KR+ P +S + + V GIP + D++ KE+F QFG L+ + D +TGRS+GF
Sbjct: 114 KRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGF 173
Query: 148 GFIRFSSHESALKAMLKKHKIGNRI 172
GF+ + S E + +L K GNRI
Sbjct: 174 GFVTYES-EDMVDHLLAK---GNRI 194
Score = 46 (21.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 290 SRQYGGGNGYYDNRQQQQGG 309
S +YGGG G Y+ GG
Sbjct: 296 SGRYGGGGGGYNRGGYSMGG 315
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 164 (62.8 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASK 192
D + RS+GFGF+ FSS AM + H I R+ + V ES K G V K
Sbjct: 3 DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTV-KK 61
Query: 193 VFVGSLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQ 246
+FVG + D E LR++FE YG + ++++ + R F FVTF+ D V K ++ +
Sbjct: 62 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 121
Query: 247 HVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQ 306
+ I V +A +++M S +G G G N +
Sbjct: 122 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDS-RGGGGNFGPGPG--SNFRGG 178
Query: 307 QGGYNNKRRRND-YDDWHHGNGGNS 330
GY + R D Y+ + G GG +
Sbjct: 179 SDGYGSGRGFGDGYNGYGGGPGGGN 203
Score = 125 (49.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI ++ L++YFE++G ++ + D+ +G+ +GFGF+ F H+ K +L+K
Sbjct: 62 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 121
Query: 166 -HKIGNRICDVR 176
H I +VR
Sbjct: 122 YHTINGHNAEVR 133
Score = 59 (25.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
YGGGN Y G YN ++ ++Y GN G S N
Sbjct: 238 YGGGN-YGSGNYNDFGNYN--QQPSNYGPMKSGNFGGSRN 274
Score = 57 (25.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
YGGG Y N Q GGY YD++ GN G+ N
Sbjct: 217 YGGGGPGYGN---QGGGYGG-----GYDNYGGGNYGSGN 247
Score = 44 (20.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRR 315
YGGGN Y GGY + R
Sbjct: 279 YGGGN-YGPGGSGGSGGYGGRSR 300
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 43/117 (36%), Positives = 59/117 (50%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V IP + DLK FEQFG + V DK TG KG F+ + + +SALKA
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 166 HKI----G-NRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
H+ G NR V+ +S G + K+FVG L T+ D+R+ FE +G +
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRKMFEPFGTI 121
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 87 ATQSKRSYPDNS-GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
+T S S P +S GP T L V G+ + T++ L++ FEQFG L N+ +DK R K
Sbjct: 61 STDSSSSPPSSSSGP--KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPK 118
Query: 146 GFGFIRFSSHESALKAMLKKH 166
GF F+R+ + E A+KA+ H
Sbjct: 119 GFAFLRYETEEEAMKAIQGMH 139
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
Y + + + T + V G+PW + L+ YFEQFG + N+ D+ TGRS+G+GF+ F
Sbjct: 42 YANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFR 101
Query: 154 SHESALKA 161
ESA +A
Sbjct: 102 DAESATRA 109
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T L+ +FE++GT V D NT RS+ GF+ +++ E
Sbjct: 29 PEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVD 88
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYY 214
AM + K+ R+ V +S + GT+ V K+F G + D E ++R++FE+Y
Sbjct: 89 AAMNARPQKMDGRLVKPKRAVSREDSQRPGTQLTV-KKIFEGGIKEDTEEHNVRDYFEHY 147
Query: 215 GAV 217
G +
Sbjct: 148 GKI 150
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 143 (55.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 49/187 (26%), Positives = 87/187 (46%)
Query: 77 CTFDASGNSSATQSKRSYPDNSGPVQN--TDLVVLGIPWTFTDNDLKEYFEQFGTLEFAN 134
C A+G ++ + S P +SG ++ T+L+V +P T +LK F G +E
Sbjct: 11 CNNTANGPTTINNNCSS-PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK 69
Query: 135 VKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPEST-KIGTEEPVASKV 193
+ DK TG+S G+GF+ + + A KA+ N + +R+ T K+ P ++ +
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAI-------NTLNGLRLQTKTIKVSYARPSSASI 122
Query: 194 -----FVGSLTPDLTESDLREHFEYYGAVVD--VLIPKPF---REFAFVTF----ELDSV 239
+V L +T+ +L + F YG ++ +L+ + R F+ F E +
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 240 AKSLIGQ 246
K L GQ
Sbjct: 183 IKGLNGQ 189
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 143 (55.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 40/112 (35%), Positives = 58/112 (51%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
SK P P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF
Sbjct: 2 SKSESPKE--PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 150 IRFSSHESALKAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVG 196
+ +++ E AM + HK+ R+ + V +S + G V K+FVG
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVG 110
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 166 (63.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 53/168 (31%), Positives = 81/168 (48%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVL--G-IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTG 142
+ ++S +P+N G +++ D + L G IP + DLK FEQFG + V D+ TG
Sbjct: 116 NGSESISIHPEN-GTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTG 174
Query: 143 RSKGFGFIRFSSHESALKAMLKKHKIGNRICDVRIPESTKIGTEEPVAS--KVFVGSLTP 200
KG F+ + + ESA+KA H+ + + P K E K+FVG L
Sbjct: 175 MHKGCAFLTYCARESAIKAQNALHE-QKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNK 233
Query: 201 DLTESDLREHFEYYGAVVDVLIPK-P---FREFAFVTFELDSVAKSLI 244
TE D+ FE YG + + + + P + AFV F + A+S I
Sbjct: 234 QQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAI 281
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 142 (55.0 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N + V +PW+ LK++F ++G++ + V VDK T RS+GFGF+ F +S KAM
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 163 LKKHKIGNRICDVRIP-ESTKIGTEEP 188
++++G R V E T+ ++P
Sbjct: 62 EAENEMGGRKLVVSFAQEKTENNQQKP 88
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 147 (56.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 48/159 (30%), Positives = 82/159 (51%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ + + V D NT S+GF F+ +++ E
Sbjct: 9 PGQLRKLFIGGLSFETTDESLRSHCSHSPSC----VMTDPNTKCSRGFRFVTYATVEEVD 64
Query: 160 KAM-LKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYY 214
AM + HK+ R+ + + S + G++ P A K+F G + D E LR++FE
Sbjct: 65 AAMNARPHKVDRRVVEPKRGVSRE-GSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKP 123
Query: 215 GA--VVDVLI-PKPFRE--FAFVTFE-LDSVAKSLIGQH 247
G V++++ P ++ FAFVTF+ DSV K++I ++
Sbjct: 124 GKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKY 162
Score = 108 (43.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIG 169
GI + L++YFE+ G +E + D ++G+ +GF F+ F H+S K +++K+
Sbjct: 106 GIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTV 165
Query: 170 N 170
N
Sbjct: 166 N 166
Score = 43 (20.2 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSN 331
S S +GGG G D +N Y D+ + N +SN
Sbjct: 175 SGSGNFGGGRGGGDGYNGFGNDGSNFGGGGSYSDFGNYNNRSSN 218
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 163 (62.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 40/139 (28%), Positives = 74/139 (53%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNT 141
+ N++AT + + N+ P T+L+V +P T + ++++ F FG +E + DK T
Sbjct: 91 NNNNNATANNNN---NNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVT 147
Query: 142 GRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLT 199
G+S G+GF+ + E A KA+ L ++ N+ V I + +E + ++V L
Sbjct: 148 GQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPS---SESIKGANLYVSGLP 204
Query: 200 PDLTESDLREHFEYYGAVV 218
++T+SDL F YG ++
Sbjct: 205 KNMTQSDLESLFSPYGKII 223
>UNIPROTKB|F1N7Z3 [details] [associations]
symbol:F1N7Z3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00696055 EMBL:DAAA02008074
Ensembl:ENSBTAT00000056782 Uniprot:F1N7Z3
Length = 268
Score = 157 (60.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 66/245 (26%), Positives = 104/245 (42%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T L+ FEQ+GTL V+ D N R G G + + + +
Sbjct: 3 PEQLQKLFIRGLSFETTHEGLRSRFEQWGTLTDCVVRRDPNAKRHGGGGERKATQVDGRV 62
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA--V 217
+K + +R +S + G PV KVFVG + D E LR++FE YG V
Sbjct: 63 ---VKPKRAVSR------EDSQRPGAHLPV-KKVFVGGIKEDTEEHHLRDYFEQYGKTEV 112
Query: 218 VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXX 273
++++ + R F FVTF+ DSV K +I ++ V +A K++M
Sbjct: 113 IEIITDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTGNGLNCEVRKALSKQEMASASSSQ 172
Query: 274 XXXXXXXXXXXSP---MSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY---DDWHHGNG 327
+ S +G G G + R GG+ R Y D ++G G
Sbjct: 173 RGRSGSEDFGGGRGGGLGGSDNFGRG-GNFSGR----GGFGGSRGGGGYAGSGDGYNGFG 227
Query: 328 GNSNN 332
+ +N
Sbjct: 228 NDGSN 232
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 161 (61.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 44/143 (30%), Positives = 74/143 (51%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+NSG + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAMLKK-HKI-GNRI----CDVR--IPEST--KIG------TEEPVASKVFVGSLT 199
+ + H + G I C R PE T K G ++ ++K+FVG +
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 200 PDLTESDLREHFEYYGAVVDVLI 222
+ E++LRE+F+ +G V +V++
Sbjct: 122 HNCGETELREYFKKFGVVTEVVM 144
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 161 (61.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 44/143 (30%), Positives = 74/143 (51%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+NSG + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAMLKK-HKI-GNRI----CDVR--IPEST--KIG------TEEPVASKVFVGSLT 199
+ + H + G I C R PE T K G ++ ++K+FVG +
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 200 PDLTESDLREHFEYYGAVVDVLI 222
+ E++LRE+F+ +G V +V++
Sbjct: 122 HNCGETELREYFKKFGVVTEVVM 144
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 161 (61.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 44/143 (30%), Positives = 74/143 (51%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+NSG + L V G+ W+ T L+ YF Q+G + + DK T +S+GFGF++F
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 156 ESALKAMLKK-HKI-GNRI----CDVR--IPEST--KIG------TEEPVASKVFVGSLT 199
+ + H + G I C R PE T K G ++ ++K+FVG +
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 200 PDLTESDLREHFEYYGAVVDVLI 222
+ E++LRE+F+ +G V +V++
Sbjct: 122 HNCGETELREYFKKFGVVTEVVM 144
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 161 (61.7 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 63/242 (26%), Positives = 96/242 (39%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L V GI W ++ L+E+F +G + A V DK TGR +GFGF+ FS + + +K
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 166 HKIGNRICDVRIPESTK----------IGTEEPVAS-------KVFVGSLTPDLTESDLR 208
H I R DV+ S + + T K+FVG L P LT+ + R
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 209 EHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXX 268
++FE YG V DV I ++ + G V+ + V ++ K
Sbjct: 128 QYFEVYGPVTDVAI----------MYDQATNRPRGFG-FVSFDSEDAV--DSVLHKTFHD 174
Query: 269 XXXXXXXXXXXXXXXXSPMSNSRQYGGG-NGYYDNRQQQQGGYNNKRRRNDYDDWHHGNG 327
+P R GGG +G Y + Y+ + N + H +
Sbjct: 175 LSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRF--LQHQSV 232
Query: 328 GN 329
GN
Sbjct: 233 GN 234
Score = 125 (49.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 82 SGNSSATQSKRSYPDNSGPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDK 139
SG + + RS + G N + V G+P T TD + ++YFE +G + + D+
Sbjct: 89 SGRTGNLNTSRS---SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQ 145
Query: 140 NTGRSKGFGFIRFSSHESALKAMLKK--HKIGNRICDVR--IPESTKIG 184
T R +GFGF+ F S E A+ ++L K H + + +V+ +P+ G
Sbjct: 146 ATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRALPKDANPG 193
Score = 44 (20.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRR 316
YG G+ D Q GGYN+ + R
Sbjct: 385 YGDGSWRSDPSQGYGGGYNDGQGR 408
Score = 40 (19.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 291 RQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
R GGG+ + GGY + R+D G GG N+
Sbjct: 366 RPSGGGSNNPGSGGYMGGGYGDGSWRSDPSQ---GYGGGYND 404
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 140 (54.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + G+ W TD+ L+E F ++GT+E A V D++T RS+GFGF+RF+S A AM
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM--- 60
Query: 166 HKIGNRICDVRIPESTKIGTEEPVA 190
+ N+ D RI K +E P A
Sbjct: 61 GAMNNQEFDGRIIRVDK-ASERPAA 84
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 119 (46.9 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L + G+ + T+ L+E F ++GT+ +V D+ T RS+GFGF+ F + E A AM +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 164 KKHKIGNRICDVRIPESTKIG 184
++ R+ +R+ E+ K G
Sbjct: 85 NGKQVDGRM--IRVDEAGKSG 103
Score = 74 (31.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 291 RQYGGGNGYYDNRQ---QQQGGYNNKRRRNDYD 320
R YGGG G Y NR GGY + R + YD
Sbjct: 175 RSYGGGGGGYSNRSGGYSSGGGYRDNRNQGGYD 207
Score = 62 (26.9 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNK--RRRNDYDDW 322
+ S Y G GY DNR Q GGY+ R+ YD +
Sbjct: 186 NRSGGYSSGGGYRDNRNQ--GGYDRSGGSYRDGYDSY 220
Score = 44 (20.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 291 RQYGGGNGYYDNRQQQQGG 309
R YGGG+ Y ++ GG
Sbjct: 154 RSYGGGDRGYGGGERSYGG 172
Score = 44 (20.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 291 RQYGGGNGYYDNRQQQQGGYNNK 313
R YGGG+ Y GGY+N+
Sbjct: 168 RSYGGGDRSYGGGG---GGYSNR 187
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 157 (60.3 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+ P Q L + G+ TD L YF Q+G + A V D NT S+GFGF+ F+S
Sbjct: 63 HDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIF 122
Query: 157 SALKAMLKK-HKIGNRICDVR--IPE---STKIG-----TEEPVASKVFVGSLTPDLTES 205
SA AM + HK+G + D + IP S+ I T+ K+ + +T +
Sbjct: 123 SAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSV 182
Query: 206 D-LREHFEYYGAVVDV-LIPKPFREFAFVTFE-LDSVAKSLI---GQHVNIKDKKVVV 257
D LR +FE +G + V ++ +P R FV +E +S + L G+H+ + ++K+ V
Sbjct: 183 DSLRVYFETFGTLDQVEILGQP-RGLGFVIYEDKESADRCLAHNSGRHI-VNERKIEV 238
>UNIPROTKB|J9P0Y4 [details] [associations]
symbol:J9P0Y4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03013644
Ensembl:ENSCAFT00000045249 OMA:SEEGYNG Uniprot:J9P0Y4
Length = 223
Score = 132 (51.5 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 110 GIPWTFTDNDLKEYFEQFGTLEFANVKV-------DKNTGRSKGFGFIRFSSHESALKAM 162
G+ + TD L+ + EQ+G L V + D NT RS+ FG+ E+ +
Sbjct: 8 GLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGEVEAIMNG- 66
Query: 163 LKKHKIGNRICDVRIPESTKIGTEEPVAS----KVFVGSLTPDLTESDLREHFEYYGAV 217
K HK+ +++ P S K ++ P A K+FVG + D E LR++FE YG +
Sbjct: 67 -KPHKVDGIAVELKRPIS-KESSQRPGAHLTLRKIFVGGIKEDAEEHHLRDYFEQYGKI 123
Score = 55 (24.4 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 235 ELDSVAKSLIGQHVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYG 294
+ DSV K +I ++ + V +A K++M P S +G
Sbjct: 128 DYDSVDKIIIQKYHTVNGHDSEVRKALSKQEMASASSSQR----------GP-SGCGNFG 176
Query: 295 GGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGN-GGNSNNAT 334
GG+G +GG Y+ + G GG+SNN++
Sbjct: 177 GGHGSGFGGNDNRGGGECGGSEEGYNGFVKGGYGGSSNNSS 217
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 55/198 (27%), Positives = 93/198 (46%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+ A + +P+ P + L V + + L FEQ GT+E A V ++ T +
Sbjct: 133 SEGAVSERAEFPE---PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQ 189
Query: 144 SKGFGFIRFSSHESALKAMLK--KHKIGNRICDVR--IPESTKIGTEEPV---ASKVFVG 196
S+GFGF+ SS + A A+ K ++ + R+ V P ++ V A +V+VG
Sbjct: 190 SRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVG 249
Query: 197 SLTPDLTESDLREHFEYYGAVVD--VLIPKPF---REFAFVTF----ELDSVAKSLIGQH 247
+L D+ L + F +G VV+ V+ + R F FVT EL+ +L GQ+
Sbjct: 250 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN 309
Query: 248 VNIKDKKVVVMEATPKKK 265
+ + +V V E P ++
Sbjct: 310 LEGRAIRVNVAEERPPRR 327
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 64/252 (25%), Positives = 108/252 (42%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + T+ L+ +FEQ G L D NT S+GFGF+ +++ E
Sbjct: 24 PEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVD 83
Query: 160 KAM-LKKHKIGNRICD----VRIPESTKIGTEEPVASKVFVGSLTPD--LTESDLREHFE 212
A + HK+ +R+ + V +S + G + K D E LR++FE
Sbjct: 84 AATNARPHKV-DRVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDDNNTEEYHLRDYFE 142
Query: 213 YYGA--VVDVLIPKPF---REFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
YG V++++ + R FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 143 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 202
Query: 267 XXXXXXXXXXXXXXXXXXSP---MSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDY---- 319
+ + +G G + QGG++ R Y
Sbjct: 203 ASASAKEAKVVLERNFGGGGGGGVGGNDNFGSGGNF-----SGQGGFDGSRGGGGYGGSG 257
Query: 320 DDWHH-GNGGNS 330
D ++ GN G++
Sbjct: 258 DGYNRFGNDGSN 269
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ T + V G+PW L YFE+FG + +A V D T RSKGFGF+ F ESA +A
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 162 MLK-KHKIGNRICDVRI 177
H I R + ++
Sbjct: 67 CENPNHTIDGRTVNCKL 83
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 62/213 (29%), Positives = 92/213 (43%)
Query: 138 DKNTGRSKGFGFIRFSSHESALKAMLKK-HKIGNRICD----VRIPESTKIGTEEPVASK 192
D T RS+GFGF+ +S E AM + HK R+ + V +S K G V K
Sbjct: 3 DPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSREDSVKPGAHLTV-KK 58
Query: 193 VFVGSLTPDLTESDLREHFEYYGAV--VDVLIPKPF---REFAFVTFE-LDSVAKSLIGQ 246
+FVG + D E +LR+ FE YG + ++V+ + R AFVTF+ D+V K ++ +
Sbjct: 59 IFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQK 118
Query: 247 HVNIKDKKVVVMEATPKKKMXXXXXXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQ- 305
+ I V +A K++M M +GGG G +
Sbjct: 119 YHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF----MGRGGNFGGGGGNFGRGGNF 174
Query: 306 -QQGGYNNKR--RRNDY---DDWHHGNGGNSNN 332
+GGY R Y D ++G GG N
Sbjct: 175 GGRGGYGGGGGGSRGSYGGGDGGYNGFGGGGGN 207
Score = 106 (42.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
+ V GI + +L++ FE +G +E V D+ +G+ +G F+ F H++ K +++K
Sbjct: 59 IFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQK 118
Query: 166 -HKIGNRICDVR 176
H I C+V+
Sbjct: 119 YHTINGHNCEVK 130
Score = 53 (23.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 293 YGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
YGGG G YD + N +Y+D+ + +G +N
Sbjct: 235 YGGGGGGYDGYNEGGNFGGNYGGGGNYNDFGNYSGQQQSN 274
Score = 53 (23.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/48 (41%), Positives = 23/48 (47%)
Query: 286 PMSNSRQ-YGGGN-GYYDNRQQQQGGYNNKRRRNDYDDWHHGN--GGN 329
P +SR YGGG G Y N Q GGY YD ++ G GGN
Sbjct: 212 PGYSSRGGYGGGGPGGYGN---QGGGYGGGG--GGYDGYNEGGNFGGN 254
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/139 (32%), Positives = 72/139 (51%)
Query: 111 IPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGN 170
IP + DLK FEQFG + V DK TG KG F+ + + ESALKA H+
Sbjct: 14 IPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNALHE-QK 72
Query: 171 RICDVRIPESTKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-P--- 225
+ + P K E K+FVG L L+++D+R+ FE +G++ + + + P
Sbjct: 73 TLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGA 132
Query: 226 FREFAFVTFELDSVAKSLI 244
+ AFV ++ ++ A++ I
Sbjct: 133 SKGCAFVKYQSNAEAQAAI 151
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 61/246 (24%), Positives = 115/246 (46%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM- 162
T++ V +P+ F D DL+ F ++G + + V +D G S G+GF+RFSS + + A+
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIE 167
Query: 163 -LKKHKIGNRICDVRIPES-TKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVD- 219
L ++ N+ R+ T + ++ P ++ +F+ L D+T+ LR+ FE +G +++
Sbjct: 168 ELDGYQYQNKKLLCRLSNLYTNLNSKYP-SNNLFIKPLPYDVTDDQLRKLFEPFGKIIEC 226
Query: 220 -VLIPKPFR-EFA-FVTF--ELDS--VAKSLIGQHVNIKDK--KVVVMEATPKKKMXXXX 270
V++ + +FA FV F ELD+ ++ G +N KD +VV A +++
Sbjct: 227 KVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRIN-KDSGYPLVVKYADTEQQKISRK 285
Query: 271 XXXXXXXXXXXXXXSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNS 330
P+ Q+ +N NN N+ ++ N N+
Sbjct: 286 QRKMQTIYQEKIIAPPIFPP-QFLQPTVLPNNNNNNNNNNNNNNNNNN----NNNNNNNN 340
Query: 331 NNATVS 336
NN ++
Sbjct: 341 NNNKIA 346
Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 90 SKRSYPDNSGP---VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKG 146
S S NSG +T+L V +P D+ L + F QFG L+ V DK+TG +KG
Sbjct: 752 SSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKG 811
Query: 147 FGFIRFSSHESALKAMLKKH--KIGNRICDVRI 177
+GF++F + ALK + + +IG++ V++
Sbjct: 812 YGFVKFYQTDEALKCQKEMNGFRIGSKFLKVKL 844
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 94 YPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFS 153
Y + + + +L + +P+ TD+ L++ FE FG + V +D N G+SK GF+RFS
Sbjct: 187 YTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHN-GQSKFAGFVRFS 245
Query: 154 SHESALKAM 162
S A KA+
Sbjct: 246 SELDASKAI 254
Score = 60 (26.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVS 336
+N+ N +N NN N+ ++ ++ N N+NN T +
Sbjct: 680 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNLTTT 728
Score = 60 (26.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 285 SPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNNATVS 336
SP+ ++ N +N NN N+ ++ ++ N N+NN ++
Sbjct: 584 SPLPYNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNVIIN 635
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+N+ N +N NN N+ ++ ++ N N+NN
Sbjct: 673 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 717
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+N+ N +N NN N+ ++ ++ N N+NN
Sbjct: 672 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 716
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 288 SNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+N+ N +N NN N+ ++ ++ N N+NN
Sbjct: 671 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 715
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 287 MSNSRQYGGGNGYYDNRQQQQGGYNNKRRRNDYDDWHHGNGGNSNN 332
+ N+ N +N NN N+ ++ ++ N N+NN
Sbjct: 669 IDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 714
WARNING: HSPs involving 566 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 363 345 0.00097 116 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 816
No. of states in DFA: 605 (64 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.42u 0.09s 30.51t Elapsed: 00:00:12
Total cpu time: 30.48u 0.09s 30.57t Elapsed: 00:00:13
Start: Thu Aug 15 14:51:20 2013 End: Thu Aug 15 14:51:33 2013
WARNINGS ISSUED: 2