RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15045
(363 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 85.4 bits (210), Expect = 2e-20
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 160 KAMLKKHKIGNRICDVRIPESTKIGTEEPVA----SKVFVGSLTPDLTESDLREHFEYYG 215
AM + + ++ ++ P A K+FVG + D E LR++FE YG
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 122
Query: 216 AVVDVLIPK-----PFREFAFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKKKM 266
+ + I R FAFVTF+ DSV K +I ++ + V +A K++M
Sbjct: 123 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 179
Score = 53.9 bits (128), Expect = 3e-09
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 91 KRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFI 150
+ + + V GI ++ L++YFEQ+G +E + D+ +G+ +GF F+
Sbjct: 85 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 144
Query: 151 RFSSHESALKAM-LKKHKIGNRICDVRIPES 180
F H+S K + K H + C+VR S
Sbjct: 145 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 175
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.0 bits (171), Expect = 7e-16
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
+ +DL+VLG+PW T+ DLKEYF FG + VK D TG SKGFGF+RF+ +E+ +K
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 162 MLKKHKIGNRICDVRIPES 180
M ++H I R CD ++P S
Sbjct: 67 MSQRHMIDGRWCDCKLPNS 85
Score = 51.1 bits (122), Expect = 3e-09
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVAKSLIG 245
S + V L TE DL+E+F +G V+ V + K + F FV F ++
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 246 QHVNIKDKKVVVMEATPKKKMN 267
Q I + K+ +
Sbjct: 69 QRHMIDGRWCDCKLPNSKQSQD 90
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 67.7 bits (165), Expect = 4e-15
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T L+EYF QFG ++ V D T RS+GFGF+ F K +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 165 KHKIGNRICDVRI 177
+H++ ++ D ++
Sbjct: 63 RHELDSKTIDPKV 75
Score = 46.9 bits (111), Expect = 8e-08
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVAKSLIGQ 246
K+F+G L+ T+ LRE+F +G V + L+ K R F FVTF + ++ Q
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 247 H-VNIKDKKVVVMEA 260
+ K + A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 65.0 bits (158), Expect = 3e-14
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ + ++EYF FG +E + +D T + +GF FI F E K M K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 165 KHKIGNRICDVRI 177
H +G C++++
Sbjct: 62 YHNVGLSKCEIKV 74
Score = 51.9 bits (124), Expect = 1e-09
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFE-LDSVAKSLIG 245
K+FVG L+PD E +RE+F +G V + +P R F F+TF+ + V K +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 246 QHVNIKDKKVVVMEA 260
++ N+ K + A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 64.7 bits (157), Expect = 5e-14
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNI 250
S VFVG T D+TE +LRE F YG V+DV IPKPFR FAFVTF D +A+SL G+ + I
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLII 65
Query: 251 KDKKVVVMEATPKKKMN 267
K V + A PK N
Sbjct: 66 KGISVHISNAEPKHNSN 82
Score = 50.4 bits (120), Expect = 7e-09
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
G ++ + V T+++L+E+F Q+G +V + F F+ F+ + A
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYG-----DVMDVFIPKPFRAFAFVTFADDQIA 55
Query: 159 LKAMLKKHKIGNRICDVRIPES 180
+ I + E
Sbjct: 56 QSLCGEDLIIKGISVHISNAEP 77
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 63.0 bits (153), Expect = 3e-13
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN-TGRSKGFGFIRFSSHES--- 157
+ ++V IP+ +++E F FG L+ + TG +GFGF+ F + +
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 158 ALKAMLKKHKIGNRICDVRIPES 180
A A+ + R + +S
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADS 89
Score = 56.1 bits (135), Expect = 8e-11
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE------FAFVTFELDSV 239
++ SK+ V ++ + ++RE F +G + V +PK F FV F
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 240 AKSLIGQHVN---IKDKKVVVMEATPKKKM 266
AK + + +++V+ A + +
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 61.9 bits (150), Expect = 4e-13
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + G+ W T DLK+YF +FG + +K+D TGRS+GFGF+ F ES K M K
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 165 KHKIGNRICDVR 176
+HK+ ++ D +
Sbjct: 62 EHKLNGKVIDPK 73
Score = 44.2 bits (104), Expect = 7e-07
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFE-LDSVAKSLIG 245
K+F+G L+ D T+ DL+++F +G VVD + R F FV F+ +SV K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 246 QHVNIKDKKVVVMEA 260
+ + K + A
Sbjct: 61 KEHKLNGKVIDPKRA 75
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 61.6 bits (149), Expect = 6e-13
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P Q L + G+ + TD L+ +FEQ+GTL V D NT RS+GFGF+ +++ E
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 160 KAM-LKKHKIGNRICDVRIPES 180
AM + HK+ R+ + + S
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVS 84
Score = 48.5 bits (115), Expect = 3e-08
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 186 EEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSV 239
+EP K+F+G L+ + T+ LR HFE +G + D ++ K R F FVT+
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 240 AKSLI-GQHVNIKDKKVVVMEA 260
+ + + + + V A
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRA 82
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 58.8 bits (142), Expect = 7e-12
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
+++T+L V +P T TD+ L F ++G++ N+ DK TGR +G F+R++ E A +
Sbjct: 4 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 63
Query: 161 AMLKKH----KIGNRICDVRI 177
A+ + + G++ VR+
Sbjct: 64 AISALNNVIPEGGSQPLSVRL 84
Score = 49.2 bits (117), Expect = 1e-08
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR-----EFAFVTFELDSVAKSLI- 244
+ ++V +L +T+ L F YG++V I + AFV + A+ I
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 245 ---GQHVNIKDKKVVVMEA 260
+ + V A
Sbjct: 67 ALNNVIPEGGSQPLSVRLA 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 59.3 bits (143), Expect = 7e-12
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
Q L + G+ + T+ L+ Y+EQ+G L V D + RS+GFGF+ FSS
Sbjct: 17 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
Query: 160 KAM-LKKHKIGNRICDVR 176
AM + H I R+ + +
Sbjct: 77 AAMAARPHSIDGRVVEPK 94
Score = 51.2 bits (122), Expect = 4e-09
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDSVA 240
E+ K+F+G L+ + TE LR ++E +G + D ++ K R F FVTF +
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 241 KSLIGQH-VNIKDKKVVVMEATPKKK 265
+ + +I + V A +++
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREE 101
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 57.8 bits (139), Expect = 1e-11
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
S +++ +L V G+P T T +L++ F Q+G + + + VD+ TG S+G GFIRF
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 158 ALKAM--LKKHKIGNRICDVRI 177
A +A+ L K + +
Sbjct: 61 AEEAIKGLNGQKPSGATEPITV 82
Score = 44.7 bits (105), Expect = 5e-07
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVA----K 241
+ ++V L +T+ +L + F YG ++ I F+ F+ A K
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 242 SLIGQHVNIKDKKVVVMEA 260
L GQ + + + V A
Sbjct: 67 GLNGQKPSGATEPITVKFA 85
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 57.4 bits (138), Expect = 2e-11
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
+SG T + V +P+T + +++ ++F + + + G G + F S +
Sbjct: 3 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 157 SALKAM--LKKHKIGNRICDVRI 177
A A+ L IG+R + +
Sbjct: 63 EATAAVIDLNDRPIGSRKVKLVL 85
Score = 34.3 bits (78), Expect = 0.004
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 184 GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREFAFVTFELDS 238
+ +P + + V ++ ++ ++ + F Y + + K A V FE
Sbjct: 3 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 239 VAKSLIGQ--HVNIKDKKVVV 257
A + + I +KV +
Sbjct: 63 EATAAVIDLNDRPIGSRKVKL 83
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 55.3 bits (133), Expect = 9e-11
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L V + T+ L E F G + V D T RS G+ ++ F A +A+ +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 164 KKHKIGNRICDVRI 177
I + +
Sbjct: 63 NFDVIKGKPVRIMW 76
Score = 47.2 bits (112), Expect = 6e-08
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVAKSLIG- 245
++VG L PD+TE+ L E F G ++ + + + +A+V F+ + A+ +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 246 -QHVNIKDKKVVVMEAT 261
IK K V +M +
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.5 bits (133), Expect = 1e-10
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVK-----VDKNTGRSKGFGFIRFSSHESALK 160
L V IP+ T+ + ++F L + + K F F+ F S + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 161 AM-LKKHKIGNRICDVRIP 178
AM + +R P
Sbjct: 64 AMAFDGIIFQGQSLKIRRP 82
Score = 40.5 bits (94), Expect = 2e-05
Identities = 11/79 (13%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP----------FREFAFVTF-ELDS 238
A +++VG++ +TE + + F + + + FAF+ F +D
Sbjct: 1 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 60
Query: 239 VAKSLIGQHVNIKDKKVVV 257
+++ + + + + +
Sbjct: 61 TTQAMAFDGIIFQGQSLKI 79
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 54.6 bits (131), Expect = 2e-10
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
NT+L+V +P TD +L F G + + D TG S G+ F+ F+S + +A+
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 163 --LKKHKIGNRICDVRI 177
L + N+ V
Sbjct: 62 KVLNGITVRNKRLKVSY 78
Score = 46.1 bits (109), Expect = 2e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVAKSLIG 245
+ + V L D+T+ +L F G + I + ++ +AFV F + ++ I
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 246 --QHVNIKDKKVVVMEATP 262
+ +++K++ V A P
Sbjct: 63 VLNGITVRNKRLKVSYARP 81
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 55.0 bits (132), Expect = 3e-10
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 16/122 (13%)
Query: 100 PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESAL 159
P N L + +P+ T ++ + F ++G + NT ++G ++ + A
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAK 60
Query: 160 KAM--LKKHKIGNRICDVRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAV 217
A L + NR V + + + K E L+ E YG
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKK-----------EEQLKLLKEKYGIN 109
Query: 218 VD 219
D
Sbjct: 110 TD 111
Score = 51.6 bits (123), Expect = 4e-09
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIP--KPFREFAFVTFELDSVAKSLIG--QH 247
+++ +L +T ++ + F YG + + + R A+V +E AK+
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 248 VNIKDKKVVVMEATPKKKMNERQDNR 273
N+ ++ +VV+ + + +
Sbjct: 69 FNVCNRYLVVLYYNANRAFQKMDTKK 94
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 53.9 bits (129), Expect = 3e-10
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+ + P N L V G+ T+ DL+E F ++G + ++ D+ + RS+GF F+ F +
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 156 ESALKAM--LKKHKIGNRICDV 175
+ A +A ++ R V
Sbjct: 62 DDAKEAKERANGMELDGRRIRV 83
Score = 38.1 bits (88), Expect = 1e-04
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR-----EFAFVTFELDSVAKSLIG 245
+ V L+ TE DLRE F YG + DV I + FAFV FE AK
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 246 Q--HVNIKDKKVVV 257
+ + + +++ V
Sbjct: 70 RANGMELDGRRIRV 83
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 54.5 bits (131), Expect = 3e-10
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 186 EEPVASKVFVGSLTPDLT-ESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
+ S+VF+G+L + +SD+ F YG +V + FAFV + + A++ +
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGC---SVHKGFAFVQYVNERNARAAV 67
Query: 245 G--QHVNIKDKKVVVMEATPKKK 265
I + + + A K
Sbjct: 68 AGEDGRMIAGQVLDINLAAEPKV 90
Score = 45.2 bits (107), Expect = 5e-07
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGI-PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
S S N+ + + + +D++ F ++G + +V KGF
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFA 53
Query: 149 FIRFSSHESALKAM--LKKHKIGNRICDVRIPESTK 182
F+++ + +A A+ I ++ D+ + K
Sbjct: 54 FVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK 89
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.9 bits (129), Expect = 4e-10
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN---TGRSKGFGFIRFSSHESALKAM 162
L + + ++ T+ LK F + G ++ + KN S GFGF+ + E A KA+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 163 --LKKHKIGNRICDVRIPESTK 182
L+ H + +VRI E
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
Score = 47.3 bits (112), Expect = 6e-08
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 194 FVGSLTPDLTESDLREHFEYYGAVVDVLIP--------KPFREFAFVTFELDSVAKSLIG 245
F+ +L TE L+ F GA+ I F FV ++ A+ +
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 246 --QHVNIKDKKVVVMEATPKKK 265
Q + K+ V + K
Sbjct: 62 QLQGHTVDGHKLEVRISERATK 83
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 54.3 bits (130), Expect = 4e-10
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ + + DL+++F G + + D+N+ RSKG ++ F +S A+ L
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 80
Query: 165 KHKIGNRICDVRIPESTK 182
++ V+ ++ K
Sbjct: 81 GQRLLGVPIIVQASQAEK 98
Score = 51.6 bits (123), Expect = 3e-09
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 175 VRIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK-----PFREF 229
VR P + EE A VF L + DL + F G V DV I +
Sbjct: 4 VREPVD-NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 230 AFVTFE-LDSVAKSLIGQHVNIKDKKVVVMEATPKK 264
A+V F + SV ++ + ++V + +K
Sbjct: 63 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 98
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 53.8 bits (129), Expect = 5e-10
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
++ L V + + T+ + E F + G ++ + +DK + GF F+ + S A A
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 162 M--LKKHKIGNRICDV 175
M + ++ +RI
Sbjct: 66 MRYINGTRLDDRIIRT 81
Score = 45.3 bits (107), Expect = 4e-07
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVAKSLIG 245
++VG+L+ TE + E F G + ++ + K F FV + + A++ +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 246 Q--HVNIKDKKVVVMEATPKKK 265
+ D+ + K+
Sbjct: 68 YINGTRLDDRIIRTDWDAGFKE 89
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 53.5 bits (128), Expect = 5e-10
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L + G+P D+ +KE FG L+ N+ D TG SKG+ F + +A+ L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 164 KKHKIGNRICDVR 176
++G++ V+
Sbjct: 64 NGMQLGDKKLLVQ 76
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
A K+F+G L L + ++E +G + + K + +AF + +V I
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 245 GQ--HVNIKDKKVVVMEATPKKK 265
+ + DKK++V A+ K
Sbjct: 61 AGLNGMQLGDKKLLVQRASVGAK 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 53.2 bits (127), Expect = 5e-10
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V G+ T D+K YFEQFG ++ A + DK T R +GFGF+ F S + K +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 165 KHKIGNRICDVR 176
H+I N++ + +
Sbjct: 62 FHEINNKMVECK 73
Score = 43.6 bits (102), Expect = 1e-06
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR-----EFAFVTFELDSVAKSLIGQ 246
K+FVG L+ + T D++ +FE +G V D ++ F FVTFE + + + +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 247 H-VNIKDKKVVVMEA 260
H I +K V +A
Sbjct: 61 HFHEINNKMVECKKA 75
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.1 bits (127), Expect = 9e-10
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 99 GPV----QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS 154
GP+ Q+ + V G+ ++ L E F Q G + ++ D+ TG+ +G+GF+ F S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 155 HESALKAM--LKKHKIGNRICDVR 176
E A A+ + K+ + V
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVN 84
Score = 46.2 bits (109), Expect = 2e-07
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSV 239
+E + V+VG L ++E L E F G VV+ +PK + + FV F +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 240 AKSLIG--QHVNIKDKKVVVMEATPKKK 265
A I + + K + V +A+ K
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHNK 91
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.8 bits (126), Expect = 1e-09
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTL--EFANVKVDKNTGRSKGFGFIRFSSHESALK 160
N L + GIP ++ E + + + +++GF F+ + SH +A
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 161 AM----LKKHKIGNRICDVRIPESTKIGTEEPVASKV 193
A + ++ V E +I +E V V
Sbjct: 61 ARRKLMPGRIQLWGHQIAVDWAEP-EIDVDEDVMETV 96
Score = 52.8 bits (126), Expect = 1e-09
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-------REFAFVTFELDSVA--- 240
++F+G + ++ E V +I R FAFV +E A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 241 -KSLIGQHVNIKDKKVVVMEATPKKKMNER 269
+ L+ + + ++ V A P+ ++E
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDED 91
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.0 bits (124), Expect = 1e-09
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ V GI ++ L++YFEQ+G +E + D+ +G+ +GF F+ F H+S K + K
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 64
Query: 165 KHKIGNRICDVR 176
H + C+VR
Sbjct: 65 YHTVNGHNCEVR 76
Score = 40.9 bits (95), Expect = 1e-05
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFE-LDSVAKSLIG 245
K+FVG + D E LR++FE YG + + R FAFVTF+ DSV K +I
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 246 QHVNIKDKKVVVMEA 260
++ + V +A
Sbjct: 64 KYHTVNGHNCEVRKA 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.6 bits (123), Expect = 2e-09
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFE----LDSVAKSLIGQ 246
+K+++G+L+P +T DLR+ F + + +AFV + ++L G+
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGK 60
Query: 247 HVNIKDKKVVVMEATPKKK 265
+ K + V + KK
Sbjct: 61 V-ELHGKIMEVDYSVSKKL 78
Score = 45.1 bits (106), Expect = 4e-07
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS---HESALKAM 162
L + + T +DL++ F + G+ F+ + A++ +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 163 LKKHKIGNRICDVR 176
K ++ +I +V
Sbjct: 58 SGKVELHGKIMEVD 71
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 51.3 bits (122), Expect = 2e-09
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
T+L+V +P T + + F G +E + DK TG+S G+GF+ + + A KA+
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 163 --LKKHKIGNRICDVR 176
L ++ + V
Sbjct: 62 NTLNGLRLQTKTIKVS 77
Score = 41.6 bits (97), Expect = 8e-06
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFR-----EFAFVTFELDSVAKSLIG 245
+ + V L ++T+ + R F G + + + + FV + A+ I
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 246 --QHVNIKDKKVVVMEATP 262
+ ++ K + V A P
Sbjct: 63 TLNGLRLQTKTIKVSYARP 81
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.1 bits (124), Expect = 3e-09
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S S ++ + + + G+P+ + ++ ++F + GRS G F
Sbjct: 2 SSGSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAF 61
Query: 150 IRFSSHESALKAM-LKKHKIGNRICDVR 176
++F+S E A KA+ K +IG+R ++
Sbjct: 62 VQFASQEIAEKALKKHKERIGHRYIEIF 89
Score = 31.0 bits (69), Expect = 0.055
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK------PFREFAFVTFELDSVAKSLI 244
V + L ++ ++ + F V + + E + K+L
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75
Query: 245 GQHVNIKDKKVVVMEATPKKKMN 267
I + + + +++ +
Sbjct: 76 KHKERIGHRYIEIFKSSRAEVRT 98
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 50.8 bits (121), Expect = 6e-09
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 186 EEPVASK-------VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238
E+P SK + +L+ ++TE +L+E FE + V + A++ F+ ++
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 239 VAKSLIG--QHVNIKDKKVVVMEATPKK 264
A+ + Q I + V + K
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGEKG 92
Score = 44.3 bits (104), Expect = 1e-06
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L+ + + T+++LKE FE +++ G+SKG +I F S A K +
Sbjct: 19 LLAKNLSFNITEDELKEVFEDAL-----EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 164 KKHKIGNRICDVRI 177
+ +I R +
Sbjct: 74 QGAEIDGRSVSLYY 87
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 49.9 bits (119), Expect = 7e-09
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L+V + + +D D++E F +FGTL+ A V +GRS G + F ALKAM
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 164 KKHKIGNRICDVRIPES 180
+ R ++++ S
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
Score = 47.2 bits (112), Expect = 6e-08
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK----PFREFAFVTFELDSVAKSLIGQ- 246
K+ V +L ++++D++E F +G + + A V FE + A + Q
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 247 -HVNIKDKKVVVMEAT 261
V + + + + T
Sbjct: 62 NGVPLDGRPMNIQLVT 77
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 50.1 bits (119), Expect = 7e-09
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFAN-VKVDKNTGRSKGFGFIRFSSHESALKAMLK 164
+ + + + L + F FG + + D +TG SKG+ FI F+S +++ A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 165 --KHKIGNRICDVRI 177
+ NR V
Sbjct: 61 MNGQYLCNRPITVSY 75
Score = 47.0 bits (111), Expect = 8e-08
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE------FAFVTFELDSVAKSLI-- 244
+F+G+L P++ E L + F +G ++ + +AF+ F + + I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 245 GQHVNIKDKKVVVMEATPKK 264
+ ++ + V A K
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 50.5 bits (120), Expect = 7e-09
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
SG + L V + +T ++ DL++ F +G L + +D T + KGF F+ F E
Sbjct: 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Query: 158 ALKAM--LKKHKIGNRICDVR 176
A+KA + R+ V
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVL 83
Score = 47.0 bits (111), Expect = 1e-07
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLI 244
+ ++FV +L+ +E DL + F YG + ++ P + FAFVTF A
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 245 GQ--HVNIKDKKVVVMEATPKKKMNER 269
+ + + + V+ +T KK+ ++
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKKEASQS 94
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 50.4 bits (120), Expect = 7e-09
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L V G+ D L F FG + + +D T + +GF F+ F E A A+ +
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 164 KKHKIGNRICDVRIPESTKI 183
+ ++ R V + + +I
Sbjct: 68 NESELFGRTIRVNLAKPMRI 87
Score = 44.7 bits (105), Expect = 6e-07
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVAKSLIGQ 246
++VG L ++ + L F +G + D+ IP + R FAFV FEL A + I
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 247 --HVNIKDKKVVVMEATPKKK 265
+ + + V A P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 50.4 bits (120), Expect = 9e-09
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 188 PVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG-- 245
P V+ G + LT+ +R+ F +G ++++ + ++FV F A I
Sbjct: 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-YSFVRFSTHESAAHAIVSV 74
Query: 246 QHVNIKDKKVVVMEATPKKKM 266
I+ V M
Sbjct: 75 NGTTIEGHVVKCYWGKESPDM 95
Score = 46.1 bits (109), Expect = 3e-07
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
N +N + GI TD +++ F FG + V KG+ F+RFS+HE
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHE 65
Query: 157 SALKAM--LKKHKIGNRICDV 175
SA A+ + I +
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKC 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.1 bits (119), Expect = 1e-08
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
T + V G+P+ TD L++YFE FG +E A V D+ TG+S+G+GF+ + +A +A
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 162 M-LKKHKIGNRICDVRI 177
I R +V +
Sbjct: 69 CKDPNPIIDGRKANVNL 85
Score = 46.3 bits (109), Expect = 3e-07
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVA 240
++ +K+FVG L T++ LR++FE +G + + ++ + + FVT + A
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 241 KSLIGQ-HVNIKDKKVVVMEATPKKKMNERQ 270
+ + I +K V A K Q
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGAKPRSLQ 96
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 49.6 bits (118), Expect = 1e-08
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQ--HV 248
S++FVG+L PD+TE ++R+ FE YG +V + F F+ E ++A+ + ++
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDKGFGFIRLETRTLAEIAKVELDNM 67
Query: 249 NIKDKKVVVMEATPKKKM 266
++ K++ V A +
Sbjct: 68 PLRGKQLRVRFACHSASL 85
Score = 44.2 bits (104), Expect = 1e-06
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q + L V +P T+ ++++ FE++G + DK FGFIR + A A
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIA 60
Query: 162 M--LKKHKIGNRICDVRI 177
L + + VR
Sbjct: 61 KVELDNMPLRGKQLRVRF 78
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 49.1 bits (116), Expect = 4e-08
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 86 SATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSK 145
S + KRS S + + G+P+ + + ++F++ +E + G++
Sbjct: 2 SPSGQKRS-RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 60
Query: 146 GFGFIRFSSHESALKAM-LKKHKIGNRICDVR 176
G GF+ F + A+ K +GNR V
Sbjct: 61 GEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 92
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.8 bits (113), Expect = 7e-08
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LK 164
+ +P+ T+ +KE+F + N R KGFG+ F +S L A+ L
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLN 77
Query: 165 KHKIGNRICDVRIPESTK 182
+ +GN+ V + + +
Sbjct: 78 EESLGNKRIRVDVADQAQ 95
Score = 42.0 bits (98), Expect = 8e-06
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 180 STKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGA-----VVDVLIPKPFREFAFVTF 234
+++ P F+G+L D+TE ++E F + P+ + F + F
Sbjct: 7 GSRLPKSPP--YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEF 64
Query: 235 ELDSVAKSLIGQH-VNIKDKKVVVMEATPKKKMN 267
E S + + ++ +K++ V A + +
Sbjct: 65 EDLDSLLSALSLNEESLGNKRIRVDVADQAQDKD 98
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.8 bits (113), Expect = 8e-08
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+ A S++ P+ +L + +P F D DL + F FG + A V +DK T
Sbjct: 5 SIGAAGSQKEGPEG------ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL 58
Query: 144 SKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180
SK FGF+ + + SA A+ + +IG + V++ S
Sbjct: 59 SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 97
Score = 42.4 bits (99), Expect = 6e-06
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF-----REFAFVTFELDSVA 240
E P + +F+ L + + DL + F +G VV + + F FV+++ A
Sbjct: 14 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 241 KSLIG--QHVNIKDKKVVVMEATPKKK 265
++ I I K++ V K
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQLKRSKND 100
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.7 bits (110), Expect = 2e-07
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVK--------VDKNTGRSKGF 147
D N+ + V G+ + T +DL ++F+Q G ++ +DK TG+ KG
Sbjct: 1 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 148 GFIRFSSHESALKAM--LKKHKIGNRICDVRI 177
+ + +A A+ V +
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSL 92
Score = 45.5 bits (107), Expect = 5e-07
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-------------FREFAFV 232
E+ S ++V L +T DL + F+ G V + A V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 233 TFELDSVAKSLIG--QHVNIKDKKVVVMEATPKKKMN 267
++E AK+ + + + K+ V A K MN
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 100
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.2 bits (109), Expect = 2e-07
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N + V + + DL+E F FG++ + DK TG+SKGF FI F E A +A+
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 163 --LKKHKIGNRICDVR 176
+ + I +V
Sbjct: 68 AGVSGFGYDHLILNVE 83
Score = 38.9 bits (90), Expect = 9e-05
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIG 245
+ + V +L+ D E+DL+E F +G++ + + K + FAF++F A I
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 246 --QHVNIKDKKVVVMEATPK 263
+ V A P
Sbjct: 69 GVSGFGYDHLILNVEWAKPS 88
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 45.9 bits (108), Expect = 2e-07
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V+ L V I +++++E F +G ++ ++ +D+ TG SKG+ + + +H+ AL
Sbjct: 5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 161 AM--LKKHKIGNRICDV 175
A L +I + V
Sbjct: 65 AKEALNGAEIMGQTIQV 81
Score = 38.2 bits (88), Expect = 1e-04
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKP-----FREFAFVTFELDSVAKSLIG-- 245
+FV S+ + E +++E F YG + ++ + + +A V +E A +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 246 QHVNIKDKKVVVMEATPK 263
I + + V K
Sbjct: 70 NGAEIMGQTIQVDWCFVK 87
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 46.0 bits (108), Expect = 3e-07
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 108 VLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM-LKKH 166
+ IP++ T D+ ++ E E A + N G+ G ++F + + A K+ L +
Sbjct: 13 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRK 72
Query: 167 KIGNRICDVRI 177
K+ R V +
Sbjct: 73 KLNGREAFVHV 83
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 45.4 bits (107), Expect = 4e-07
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF---REFAFVTFELDSVAKSLIG--Q 246
+F+ +L + L + F +G ++ + + + FV FE A+ I
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 247 HVNIKDKKVVVMEATPKK 264
+ + D+KV V +K
Sbjct: 70 GMLLNDRKVFVGRFKSRK 87
Score = 45.0 bits (106), Expect = 5e-07
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
++ + + + + L + F FG + KV + SKG+GF+ F + E+A +A
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 162 M--LKKHKIGNRICDVRIPESTK 182
+ + + +R V +S K
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKSRK 87
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 44.8 bits (105), Expect = 5e-07
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L + P ++T ++++ + + + S+ F +I +S E A + L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 164 KKHKIGNRICDVRI 177
KI ++
Sbjct: 64 NGLKIEGYTLVTKV 77
Score = 41.3 bits (96), Expect = 9e-06
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVV------DVLIPKPFREFAFVTFELDSVAKSLIG 245
+++ + P T+ ++R+ + V + R + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 246 QH-VNIKDKKVVVMEATP 262
+ + I+ +V + P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 45.1 bits (106), Expect = 5e-07
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK--PFREFAFVTFELDSVAKSLIG--Q 246
+++VG+L PD+ D+ + F YGA+ D+ + FAFV FE A+ +
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 74
Query: 247 HVNIKDKKVVVMEATPKKK 265
+ ++ V +
Sbjct: 75 GYDYDGYRLRVEFPRSGRG 93
Score = 43.9 bits (103), Expect = 2e-06
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 99 GPVQNTD--LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
GP N D + V +P D+++ F ++G + ++K + F F+ F
Sbjct: 8 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPR 64
Query: 157 SALKAM--LKKHKIGNRICDVRIPESTK 182
A A+ + V P S +
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEFPRSGR 92
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 44.7 bits (105), Expect = 7e-07
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFREFAFVTFELDSVAKSLIG--Q 246
++ V ++ + DLR+ F +G ++DV I + + F FVTFE + A
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 72
Query: 247 HVNIKDKKVVVMEATPKKKMN 267
++ +K+ V AT + N
Sbjct: 73 GTVVEGRKIEVNNATARVMTN 93
Score = 44.7 bits (105), Expect = 8e-07
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 93 SYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRF 152
S ++ L V IP+ F D DL++ F QFG + + ++ SKGFGF+ F
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTF 58
Query: 153 SSHESALKAM--LKKHKIGNRICDVR 176
+ A +A L + R +V
Sbjct: 59 ENSADADRAREKLHGTVVEGRKIEVN 84
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 44.6 bits (105), Expect = 7e-07
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG--QHVN 249
++V +L +E + + F + K R++AFV F A +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-RDYAFVHFSNREDAVEAMKALNGKV 68
Query: 250 IKDKKVVVMEATPKKKMN 267
+ + V A P K +
Sbjct: 69 LDGSPIEVTLAKPVDKDS 86
Score = 42.3 bits (99), Expect = 5e-06
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L V + + ++ +++ F VK + + + F+ FS+ E A++AM L
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK------KIRDYAFVHFSNREDAVEAMKAL 64
Query: 164 KKHKIGNRICDVRI 177
+ +V +
Sbjct: 65 NGKVLDGSPIEVTL 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 44.6 bits (105), Expect = 1e-06
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVD-VLIPKPFREFAFVTFELDSVA----KSLIGQ 246
++ V +L +T L + F +G V+ + K + A + + A SL GQ
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ 68
Query: 247 HVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRN 280
++ + + + +N + +N + D
Sbjct: 69 NIYNACCTLRIDFSKL-TSLNVKYNNDKSRDYTR 101
Score = 44.6 bits (105), Expect = 1e-06
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
+G ++V + + T + L + F +FGT+ +K+ T ++ ++++ S
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTV----LKIITFTKNNQFQALLQYADPVS 57
Query: 158 ALKAM--LKKHKIGNRICDVRIPESTK 182
A A L I N C +RI S
Sbjct: 58 AQHAKLSLDGQNIYNACCTLRIDFSKL 84
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.8 bits (103), Expect = 1e-06
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
+T + V G P L + F Q+G + + + + IR+ S A KA+
Sbjct: 4 DTWVTVFGFPQASASYILLQ-FAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL 56
Query: 163 -LKKHKIGNR-ICDVR 176
G + V+
Sbjct: 57 SKDGRIFGESIMIGVK 72
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 44.3 bits (104), Expect = 1e-06
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 180 STKIGTEEPVAS-KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDS 238
S KIG + + +++VG L P+ + + L F+ +G++ + K LD+
Sbjct: 6 SGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDA 65
Query: 239 VAK---SLIGQHVNIKDKKVVVMEATPKKK 265
+ G + D+++ V A
Sbjct: 66 AQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95
Score = 35.0 bits (80), Expect = 0.002
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 85 SSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRS 144
SS + K Y + P T L V G+ + L F++FG++ + +
Sbjct: 2 SSGSSGKIGY-GKANP--TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS---- 54
Query: 145 KGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177
F +I++ S ++A A ++ +G +R+
Sbjct: 55 --FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 43.5 bits (102), Expect = 2e-06
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLI---PKPFREFAFVTFELDSVAKS 242
++ ++VG+L+ D+TE + + F G + + FV F A +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 243 LIG--QHVNIKDKKVVVMEATPKKK 265
+ I K+V V AT
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSS 88
Score = 42.7 bits (100), Expect = 3e-06
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 102 QNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
Q L V + T+ + + F Q G + + + + + F+ F H A A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAA 64
Query: 162 M--LKKHKIGNRICDVR 176
+ + KI + V
Sbjct: 65 LAAMNGRKILGKEVKVN 81
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 43.4 bits (101), Expect = 2e-06
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 96 DNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSH 155
+ S +L + + + +LK + V + TG ++ FG++ F S
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESA 64
Query: 156 ESALKAM-LKKHKIGNRICDVRIPES 180
E KA+ L K+ + P+
Sbjct: 65 EDLEKALELTGLKVFGNEIKLEKPKG 90
Score = 35.7 bits (81), Expect = 0.001
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 184 GTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIP-----KPFREFAFVTFELDS 238
G+E +F+G+L P+ + ++L+ A D+ + + +
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAED 66
Query: 239 VAKSLIGQHVNIKDKKVVVMEATPK 263
+ K+L + + ++ + + +
Sbjct: 67 LEKALELTGLKVFGNEIKLEKPKGR 91
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.8 bits (100), Expect = 3e-06
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L V G+ + + L++ F ++G + V D+ T RS+GFGF+ F + + A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 KKHKIGNRICDVR 176
+ R V
Sbjct: 68 NGKSVDGRQIRVD 80
Score = 39.7 bits (92), Expect = 4e-05
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAV-----VDVLIPKPFREFAFVTFELDSVAKSLIG- 245
K+FVG L+ D E L + F YG + V + R F FVTFE AK +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 246 -QHVNIKDKKVVVMEATPKKKMNERQDNRN 274
++ +++ V +A DNR+
Sbjct: 67 MNGKSVDGRQIRVDQAGKSS------DNRS 90
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 43.2 bits (101), Expect = 3e-06
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI- 244
+ V+ V V L + E+DL E E +G + V++ R A V FE AK +
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-QALVEFENIDSAKECVT 69
Query: 245 ---GQHVNIKDKKVVVMEATPKKKMNERQDNRNN 275
V I ++ +T K+ ++
Sbjct: 70 FAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSS 103
Score = 31.3 bits (70), Expect = 0.049
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 90 SKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGF 149
S S + + + V G+ + + DL E E+FGT+ + + K
Sbjct: 2 SSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QAL 55
Query: 150 IRFSSHESALKAM----LKKHKIGNRICDVRIPESTKIGT 185
+ F + +SA + + I + S +I
Sbjct: 56 VEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR 95
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 42.7 bits (100), Expect = 3e-06
Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 103 NTDLVVLGIPWTFTDNDLKE-YFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKA 161
N + + + ++LK+ F + + + +G F+ F SA A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 162 M--LKKHKIGNRICDVR 176
+ ++ ++ ++
Sbjct: 63 LRSMQGFPFYDKPMRIQ 79
Score = 36.6 bits (84), Expect = 6e-04
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 192 KVFVGSLTPDLTESDLREH----FEYYGAVVDVLIPKPF--REFAFVTFELDSVAKSLIG 245
+++ +L + + +L++ F +G ++D+L+ + R AFV F+ S A + +
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 246 --QHVNIKDKKVVVMEATPKKKM 266
Q DK + + A +
Sbjct: 65 SMQGFPFYDKPMRIQYAKTDSDI 87
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 42.4 bits (99), Expect = 4e-06
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 101 VQNTDLVVLGIPWTFTDND-LKEYFEQFGTLEFANVKVD-KNTGRSKGFGFIRFSSHESA 158
++ ++++ + D + L+E FE FG++E N+ K + F+ F + +SA
Sbjct: 2 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 61
Query: 159 LKAM-LKKHKIGNRICDVRI 177
+A+ + + +GNR V +
Sbjct: 62 ERALQMNRSLLGNREISVSL 81
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.2 bits (96), Expect = 1e-05
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 97 NSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHE 156
S Q+ + G+ + N L E+ G ++ + +K + F R+ + E
Sbjct: 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTE 67
Query: 157 SALKAMLKKHKIGNRICD 174
+ +A + + G + D
Sbjct: 68 ESKRAYVTLN--GKEVVD 83
Score = 37.0 bits (85), Expect = 5e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 193 VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
V G L ++ + L E G V + + P + ++F + +K
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDAL-LMPPNKPYSFARYRTTEESKRAY 73
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.8 bits (95), Expect = 1e-05
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 191 SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG--QHV 248
+ ++V D+T + LR F +G ++D+ + P AFVT+E A +
Sbjct: 6 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRN-CAFVTYEKMESADQAVAELNGT 62
Query: 249 NIKDKKVVVMEATPK 263
++ ++ V A +
Sbjct: 63 QVESVQLKVNIARKQ 77
Score = 37.7 bits (87), Expect = 2e-04
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
P + L V G T L+ F FG +D + + F+ + ESA
Sbjct: 1 APRKGNTLYVYGED--MTPTLLRGAFSPFGN------IIDLSMDPPRNCAFVTYEKMESA 52
Query: 159 LKAM--LKKHKIGNRICDVRI 177
+A+ L ++ + V I
Sbjct: 53 DQAVAELNGTQVESVQLKVNI 73
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 41.3 bits (96), Expect = 2e-05
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 11/109 (10%)
Query: 186 EEPVASK-VFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTF-----ELDSV 239
EE + F G L DL F +G + + + + F E
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGK 64
Query: 240 AKSLIGQHVNIKDKKVVVMEATPKKKMNE----RQDNRNNFDRRNDRSR 284
AK ++ +++K+V + + +D + + ++ + R
Sbjct: 65 AKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
Score = 32.9 bits (74), Expect = 0.015
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS-HESALKAMLK 164
+ DL F G +++ + R G I F + AL
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFV------RGAKEGIILFKEKAKEALGKAKD 67
Query: 165 KHKIGNRICDVRIPESTKIGTEEP 188
+ ++ + + G E
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEVEK 91
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 41.0 bits (95), Expect = 2e-05
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 98 SGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHES 157
S + + + + + + L E +QFG L++ V + +T SKG F +F + E+
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 158 ALKAM--------LKKHKIGNRICDVRI 177
A K + K+ R V +
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDL 90
Score = 36.7 bits (84), Expect = 6e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVAKSLI-- 244
VF+ +L+ D E L E + +G + V + + AF F A+ +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 245 ------GQHVNIKDKKVVVMEATPKKKM 266
G + + +++ V A + +
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 41.0 bits (95), Expect = 4e-05
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 80 DASGNSSATQSKRSYPDNSG---PVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVK 136
A Q ++ P P +L+V IP T + L++ FE++G +E +
Sbjct: 16 TAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIV 75
Query: 137 VDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPES 180
D+ T +S+G+GF++F S SA +A+ L I N+ V + S
Sbjct: 76 CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121
Score = 40.7 bits (94), Expect = 5e-05
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 27/121 (22%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVA 240
E V + V + + E LR+ FE YG + V I + FV F+ S A
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 241 KSLIG--QHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNG 298
+ I NI +K++ V A + R + + G GNG
Sbjct: 98 QQAIAGLNGFNILNKRLKVALAASGHQ-------------RPGIAGA-------VGDGNG 137
Query: 299 Y 299
Y
Sbjct: 138 Y 138
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.4 bits (91), Expect = 8e-05
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
+ V IP+ T+ LK+ F + G + + D+ TG+ KG+GF + E+AL AM L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 164 KKHKIGNRICDVRI-------PESTKIGTEEPV 189
+ R V E +GT PV
Sbjct: 71 NGREFSGRALRVDNAASEKNKEELKSLGTGAPV 103
Score = 37.0 bits (85), Expect = 5e-04
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFRE-----FAFVTFELDSVAKSLIG- 245
VFVG++ + TE L++ F G VV + + F ++ A S +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 246 -QHVNIKDKKVVVMEATPKKKMNERQDNRNN 275
+ + V A +K E +
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 38.7 bits (90), Expect = 9e-05
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 118 NDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDV 175
DL+ +FG + K+ G + F E A + L G R
Sbjct: 34 EDLRVECSKFGQIR----KLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 176 RI 177
+
Sbjct: 90 QA 91
Score = 33.0 bits (75), Expect = 0.010
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 204 ESDLREHFEYYGAVVDVLIPKP-FREFAFVTFELDSVAKSLIGQ--HVNIKDKKVVVMEA 260
DLR +G + +L+ A V+F A I +++
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Query: 261 TPKKK 265
Sbjct: 93 DGTTD 97
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 38.6 bits (89), Expect = 9e-05
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 101 VQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALK 160
V+N + + G P T +D+KE+ E G KG F+ F S ESA K
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQ-VLNIQMRRTLHKAFKGSIFVVFDSIESAKK 62
Query: 161 AM-LKKHKIGNRICDVRIPE 179
+ K + +
Sbjct: 63 FVETPGQKYKETDLLILFKD 82
Score = 35.9 bits (82), Expect = 7e-04
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVD----VLIPKPFREFAFVTFELDSVAKSLIGQH 247
V++ D T D++E E G V++ + K F+ FV F+ AK +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 67
Query: 248 -VNIKDKKVVVMEA 260
K+ ++++
Sbjct: 68 GQKYKETDLLILFK 81
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 37.8 bits (87), Expect = 1e-04
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM--L 163
L + G+ TD DL + + +G + +DK T + KG+GF+ F S +A KA+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 164 KKHKIGNRI 172
K + ++
Sbjct: 61 KASGVQAQM 69
Score = 28.6 bits (63), Expect = 0.24
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 193 VFVGSLTPDLTESDLREHFEYY 214
+++ L P T+ DL + + Y
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.7 bits (87), Expect = 3e-04
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 89 QSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFG 148
Q+ D +D+ + F + E E++G +E N D G
Sbjct: 14 QNSSQSADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN-VCDNLGDHLVGNV 71
Query: 149 FIRFSSHESALKAM--LKKHKIGNRICDV 175
+++F E A KA+ L +
Sbjct: 72 YVKFRREEDAEKAVIDLNNRWFNGQPIHA 100
Score = 33.9 bits (77), Expect = 0.006
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 178 PESTKIGTEEPVA--SKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPF----REFAF 231
P+++ + + S V + + E E E YG V ++ + +
Sbjct: 13 PQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 72
Query: 232 VTFE 235
V F
Sbjct: 73 VKFR 76
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 37.8 bits (87), Expect = 3e-04
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 191 SKVFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIG--QH 247
S + V +L P+ +T L F YG V V I +E A V + A+ +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 248 VNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYG 294
+ K + + + + R+ + D SP+ ++ G
Sbjct: 63 HKLHGKPIRITLSKHQNVQLPREGQEDQ-GLTKDYGNSPLHRFKKPG 108
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.1 bits (85), Expect = 4e-04
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 176 RIPESTKIGTEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPK------PFREF 229
+IP + EP +++ +L+P +TE DL F + I +
Sbjct: 5 KIPMFSSYNPGEP-NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 230 AFVTFELDSVAKSLIG-QHVNIKDKKVVVMEATPKKK 265
+ ++L + K +V+ KK+
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 36.3 bits (83), Expect = 8e-04
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 103 NTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM 162
N L + + T+ DL F +F + ++ TGR +G FI F + E A +A+
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 163 --LKKHKIGNRICDVRI 177
+ +K+ +I +
Sbjct: 78 HLVNGYKLYGKILVIEF 94
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 35.1 bits (80), Expect = 0.002
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 193 VFVGSLTPD-LTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI----GQH 247
V + L + E +G + + + AF+ A++ +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNH-LILNKINEAFIEMATTEDAQAAVDYYTTTP 69
Query: 248 VNIKDKKVVVMEATPKKKM 266
+ K V V + K++
Sbjct: 70 ALVFGKPVRVHLSQKYKRI 88
Score = 30.0 bits (67), Expect = 0.11
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKKHKIGNR 171
L + E FG + + N FI ++ E A A+
Sbjct: 18 RGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMATTEDAQAAVDYYTTTPAL 71
Query: 172 ICDVRI 177
+ +
Sbjct: 72 VFGKPV 77
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.4 bits (78), Expect = 0.004
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 84 NSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGR 143
+S Q++ + P T+L + +P + + +L+ + FG + + ++G
Sbjct: 2 KASGVQAQMAKQQEQDP---TNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 57
Query: 144 SKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRIPE 179
S+G GF R S E + I E
Sbjct: 58 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95
Score = 30.9 bits (69), Expect = 0.057
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 186 EEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVL-----IPKPFREFAFVTFELDSVA 240
+E + +++ +L + E +L + +G V+ +
Sbjct: 14 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCE 73
Query: 241 KSLIGQH-VNIKDKKVVVMEATP 262
+ + IK V P
Sbjct: 74 AVIGHFNGKFIKTPPGVSAPTEP 96
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.2 bits (75), Expect = 0.007
Identities = 8/77 (10%), Positives = 24/77 (31%)
Query: 190 ASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVN 249
+S + V +L D ++ + + Y + F + + + +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYS 64
Query: 250 IKDKKVVVMEATPKKKM 266
+ K ++V +
Sbjct: 65 FRGKDLIVQLQPTDALL 81
Score = 33.2 bits (75), Expect = 0.008
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 99 GPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESA 158
G ++ ++V +P ++ + + + R+K F+ + E A
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQA 53
Query: 159 LKAM--LKKHKIGNRICDVRI 177
A+ ++ + V++
Sbjct: 54 QNAIQMFHQYSFRGKDLIVQL 74
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 32.5 bits (73), Expect = 0.018
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 104 TDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAM- 162
+ T + F + +S I FS+ SA A
Sbjct: 11 CVANDDVFSESETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSAADARL 64
Query: 163 -LKKHKIGNRICDVRIPESTKIGTE 186
L K + + + ++ IG+
Sbjct: 65 RLHKTEFLGKEMKLYFAQTLHIGSS 89
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 31.7 bits (71), Expect = 0.028
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 18/99 (18%)
Query: 81 ASGNSSATQSKRSYPDNSGPVQNTDLVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKN 140
+SG+S ++RS + ++V G+P + + DLK++ + V
Sbjct: 2 SSGSSGGPPTRRS---------DFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYA 45
Query: 141 TGRSKGFGFIRFSSHESALKAM--LKKHKIGNRICDVRI 177
+ G G + + E A+ L K + +
Sbjct: 46 DVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY 84
Score = 30.1 bits (67), Expect = 0.13
Identities = 11/74 (14%), Positives = 20/74 (27%)
Query: 192 KVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIK 251
+V V L P + DL++H G V + K + D +
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFR 76
Query: 252 DKKVVVMEATPKKK 265
+ +
Sbjct: 77 SHEGETSYIRVYPE 90
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.041
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 116 TDNDLKEYFEQFGTLEFANVKVDKNTGR--SKGFGFIRFSSHESALKAM--LKKHKIGNR 171
D+++ ++G ++ + + G F+ F+S KAM L K NR
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 172 ICDV 175
+
Sbjct: 87 VVVT 90
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.1 bits (64), Expect = 0.22
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 185 TEEPVASKVFVGSLTPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLI 244
TE+P +F+ +L + E L F + +V + + AFV F + + +
Sbjct: 3 TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAK 62
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.7 bits (58), Expect = 1.5
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 106 LVVLGIPWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSSHESALKAMLKK 165
L + +P T+ ++ F + + K F+ ++ E+A+ +
Sbjct: 11 LHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMVNYY 64
Query: 166 HKIGNRICDVRI 177
+ + + I
Sbjct: 65 SAVTPHLRNQPI 76
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 26.5 bits (58), Expect = 2.0
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 11/64 (17%)
Query: 112 PWTFTDNDLKEYFEQFGTLEFANVKVDKNTGRSKGFGFIRFSS----HESALKAMLKKHK 167
PW D +Y F +L G G L + +
Sbjct: 1 PWAVKPEDKAKYDAIFDSL-------SPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSD 53
Query: 168 IGNR 171
I +
Sbjct: 54 IDHD 57
>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 92
Score = 25.2 bits (55), Expect = 5.1
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 315 RRNDYDDWHHGNGGNSNNATVSPDVLQAVVSKAVS-----EVL--NVQKAIDE 360
D W G V + + ++ NV++ ++
Sbjct: 28 NDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVENVKEQLEL 80
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 26.5 bits (57), Expect = 5.1
Identities = 22/128 (17%), Positives = 39/128 (30%)
Query: 199 TPDLTESDLREHFEYYGAVVDVLIPKPFREFAFVTFELDSVAKSLIGQHVNIKDKKVVVM 258
T DL +LR H VL E FE V + +G +I K++
Sbjct: 8 TKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF 67
Query: 259 EATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGNGYYDNRQQQQGGYNNKRRRND 318
+ + + R + R + G ++ Q G + + +
Sbjct: 68 QDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVN 127
Query: 319 YDDWHHGN 326
Y+ N
Sbjct: 128 YEALGSEN 135
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (56), Expect = 5.5
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 242 SLIGQHVNIKDKKVVVMEATPKKKMNERQDNRNNFDRRNDRSRSPMSNSRQYGGGN 297
I + ++D+ V D + R+ + NS +GG N
Sbjct: 98 ESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTN 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,767
Number of extensions: 63501
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 155
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)