BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15047
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 191
Query: 119 FIH 121
FIH
Sbjct: 192 FIH 194
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP 92
+++H +H +L +KTELCR G C +G C F H A E R P
Sbjct: 153 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 203
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + + G C YG++C F H
Sbjct: 131 RYKTELCRPFEESGACKYGEKCQFAH 156
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174
Query: 119 FIH--EEKSVSSRGTSVTS 135
FIH EE+ + G +++
Sbjct: 175 FIHNAEERRALAGGRDLSA 193
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 81 FAHGAHELRVIPRHP--------RYRTKLCQSYHQDGFCPYGQRCYF---IHEEKSVS 127
F+ G L + P RY+T+LC+ + ++G C YG +C F IHE +S++
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVI 91
+++H H +L +KTELCR G C +G C F H A E R +
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL 185
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174
Query: 119 FIH--EEKSVSSRGTSVTS 135
FIH EE+ + G +++
Sbjct: 175 FIHNAEERRALAGGRDLSA 193
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 81 FAHGAHELRVIPRHP--------RYRTKLCQSYHQDGFCPYGQRCYF---IHEEKSVS 127
F+ G L + P RY+T+LC+ + ++G C YG +C F IHE +S++
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVI 91
+++H H +L +KTELCR G C +G C F H A E R +
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL 185
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 193
Query: 119 FIH 121
FIH
Sbjct: 194 FIH 196
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP 92
+++H +H +L +KTELCR G C +G C F H A E R P
Sbjct: 155 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 205
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + ++G C YG++C F H
Sbjct: 133 RYKTELCRPFEENGACKYGEKCQFAH 158
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 52/66 (78%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174
Query: 119 FIHEEK 124
FIH +
Sbjct: 175 FIHNAE 180
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 81 FAHGAHELRVIPRHP--------RYRTKLCQSYHQDGFCPYGQRCYF---IHEEKSVS 127
F+ G L + P RY+T+LC+ + ++G C YG +C F IHE +S++
Sbjct: 91 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVI 91
+++H H +L +KTELCR G C +G C F H A E R +
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL 185
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 3/77 (3%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 213
Query: 119 FIH---EEKSVSSRGTS 132
FIH E + S G S
Sbjct: 214 FIHNADERRPAPSGGAS 230
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP 92
+++H +H +L +KTELCR G C +G C F H A E R P
Sbjct: 175 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAP 225
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + + G C YG++C F H
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAH 178
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 186
Query: 119 FIH 121
FIH
Sbjct: 187 FIH 189
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + + G C YG++C F H
Sbjct: 126 RYKTELCRPFEESGTCKYGEKCQFAH 151
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
+++H +H +L +KTELCR G C +G C F H A E R
Sbjct: 148 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 51/63 (80%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPYG RC+
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 161
Query: 119 FIH 121
IH
Sbjct: 162 LIH 164
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP 92
+++H +H +L +KTELCR G C +G C H A E R P
Sbjct: 123 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEERRQAP 173
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + + G C YG++C F H
Sbjct: 101 RYKTELCRPFEESGACKYGEKCQFAH 126
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR +E G CK+G C+FAHG+HELR + RHP+Y+T+ C+++H GFCPYG RC+
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCH 195
Query: 119 FIH 121
F+H
Sbjct: 196 FVH 198
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+ + + G C YG++C F H
Sbjct: 135 RYKTELCRPFEEAGECKYGEKCQFAH 160
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 47 RYSHFYHSRENL-----FKTELCRLHDETGVCKFGTGCKFAHGAHE 87
+++H H N+ +KTE CR G C +G C F H A E
Sbjct: 157 QFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR 93
+ +P+ W+ + + + +KTELCR E+G C++G C+FAHG ELR R
Sbjct: 77 LAPRPSSDWSPSPTSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASR 136
Query: 94 HPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
HP+Y+T+LC ++ G CPYG RC+FIH
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 113
SR +KTELC G C +G+ C F H E P HP L QS G P
Sbjct: 135 SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHV---LRQSISFSGL-PS 190
Query: 114 GQR 116
G+R
Sbjct: 191 GRR 193
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR + E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPYG RC+
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 156
Query: 119 FIHEE 123
FIH
Sbjct: 157 FIHNP 161
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYG 114
+ L+KTE C+ +G C++G+ C+FAHG EL+ PRHP+Y+++ C+S+ G+CPYG
Sbjct: 323 KRALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYG 382
Query: 115 QRCYFIHEEKSVSSRGT 131
RC F+H+E + T
Sbjct: 383 LRCCFLHDESNAQKSAT 399
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR + E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPYG RC+
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 155
Query: 119 FIHEE 123
FIH
Sbjct: 156 FIHNP 160
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPYG RC+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPYGSRCH 161
Query: 119 FIH 121
FIH
Sbjct: 162 FIH 164
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 113
SR +KTELC G C +G+ C F H E P HP L QS G P
Sbjct: 135 SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHV---LRQSISFSGL-PS 190
Query: 114 GQR 116
G+R
Sbjct: 191 GRR 193
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
+ +FKTELC +ETG C +G C+FAHG ELR + RHPRY+T++C+ G CPYG
Sbjct: 266 QGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGH 325
Query: 116 RCYFIH 121
RC+F H
Sbjct: 326 RCHFRH 331
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KTELCR E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPYG RC+
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 163
Query: 119 FIHEE 123
FIH
Sbjct: 164 FIHNP 168
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIH 121
RY+T+LC+++ + G C YG +C F H
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAH 128
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 113
+R +KTELC G C +G+ C F H E P HP L QS G P
Sbjct: 137 NRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPV---LRQSISFSGL-PS 192
Query: 114 GQR 116
G+R
Sbjct: 193 GRR 195
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYG 114
R+ + KTELC ETG C +G C+FAHG ELR + RHPRY+T++C+ CPYG
Sbjct: 229 RQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYG 288
Query: 115 QRCYFIH 121
RC+F H
Sbjct: 289 HRCHFRH 295
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 28 PATEERYSSKPTDTWNANGRY-----------------SHFYHSRENLFKTELCRLHDET 70
P + R SS PT+ N+ Y + + +FKTELC +ET
Sbjct: 211 PNRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEET 270
Query: 71 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
G C +G C+FAHG ELR + RHPRY+T +C+ CPYG RC+F H
Sbjct: 271 GDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRH 321
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
+ + KTELC ETG C +G C+FAHG ELR + RHPRY+T++C+ CPYG
Sbjct: 220 QGMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGH 279
Query: 116 RCYFIHEEKSVSSRGTSVTSSVSSRGSGKI 145
RC+F H S+S + V + + S K+
Sbjct: 280 RCHFRH---SLSEQEKLVAAGFKPKSSLKL 306
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYG 114
R+ KTELC E G C +G C+FAHG ELR + RHPRY+T CQ + CPYG
Sbjct: 379 RQGAAKTELCNKW-ERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYG 437
Query: 115 QRCYFIH 121
RC+F H
Sbjct: 438 HRCHFRH 444
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRC 117
L+KTELC G CK+G C+FAHG +EL+ + YRTK C ++ + G+CPYG+RC
Sbjct: 204 LYKTELCESFTIKGYCKYGNKCQFAHGLNELKFKKKSNNYRTKPCINWSKLGYCPYGKRC 263
Query: 118 YFIH-EEKSV 126
F H ++K V
Sbjct: 264 CFKHGDDKDV 273
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 49 SHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQD 108
S + + L+KTELC G C +G+ C+FAHG EL+V +RTK C ++ +
Sbjct: 160 SQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKL 219
Query: 109 GFCPYGQRCYFIH 121
G+CPYG+RC F H
Sbjct: 220 GYCPYGRRCCFKH 232
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Query: 59 FKTELCRLHDETGV--CKFGTGCKFAHGAHELRVI---PRHP--RYRTKLCQSYHQ--DG 109
+KT LC +H +G+ C G CKFAHG ELR R+P +Y+TKLC+++ + G
Sbjct: 271 YKTRLCMMH-ASGIKPCDMGARCKFAHGLKELRATDAPARYPNNKYKTKLCKNFARGGTG 329
Query: 110 FCPYGQRCYFIH 121
FCPYG RC F+H
Sbjct: 330 FCPYGLRCEFVH 341
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 59 FKTELCRLHDETGV--CKFGTGCKFAHGAHELRV--IP-RHP--RYRTKLCQSYHQ--DG 109
FKT LC H G+ C G CKFAHG ELR IP R+P +Y+TKLC+++ + G
Sbjct: 274 FKTRLCMTH-AAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSG 332
Query: 110 FCPYGQRCYFIH 121
CPYG RC F+H
Sbjct: 333 VCPYGLRCEFVH 344
>sp|A3BUD2|C3H57_ORYSJ Putative zinc finger CCCH domain-containing protein 57 OS=Oryza
sativa subsp. japonica GN=Os08g0491700 PE=4 SV=1
Length = 605
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 60 KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119
KT +C TG C G GC++AH ELRVI P+YRT+ C+ + C YG +C +
Sbjct: 521 KTVMCPDWCRTGHCSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRY 580
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C+ + +TG CKFG CKF H G +L + R K C Y + G C YG
Sbjct: 131 CQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGN 190
Query: 116 RCYFIHEE---KSVSSRGTSVTSSVSSRGSG 143
C F H E SSRG+ + SV S +
Sbjct: 191 TCKFHHPELFNAMASSRGSPIYPSVHSSATA 221
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 55 RENLFKTEL----CRLHDETGVCKFGTGCKFAHGAHELRVIPRHP----------RYRTK 100
REN+F C+ + +TG CKFG CKF H +R +P R +
Sbjct: 325 RENVFPERPDQPECQYYMKTGDCKFGAVCKFHH--PRVRSMPTPDCVLSPVGLPLRPGEE 382
Query: 101 LCQSYHQDGFCPYGQRCYFIH 121
LC+ Y + G C +G C F H
Sbjct: 383 LCKFYSRYGICKFGANCKFDH 403
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAH------GAHELRVIPRHP-RYRTKLCQSYHQDGFCPYGQR 116
C + TG+C+FG C+F H R+ +P R CQ Y + G C +G
Sbjct: 86 CTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPT 145
Query: 117 CYFIH--EEKSVSSR 129
C F H E+ ++ R
Sbjct: 146 CKFHHPREKAGIAGR 160
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 46/126 (36%)
Query: 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPR--------------------- 96
FKT+LC G C + T C FAHG ELR P + +
Sbjct: 87 FFKTKLC-CKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIPIM 145
Query: 97 ------------------------YRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTS 132
Y+ + C+ ++ D CPYG C F+H+E+S + +
Sbjct: 146 TSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVA 205
Query: 133 VTSSVS 138
++ S S
Sbjct: 206 ISLSPS 211
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHEL 88
+KT +C + TG C FG+ C FAHGA EL
Sbjct: 246 WKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 97 YRTKLCQSYHQDGFCPYGQRCYFIH 121
++T++C + G+CP+G +C+F H
Sbjct: 246 WKTRICNKWEMTGYCPFGSKCHFAH 270
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 36/101 (35%)
Query: 56 ENLFKTELCRLHDETGVCKF-GTGCKFAHGAHELRVI----------------------- 91
++ FKT+LC G C + + C FAH A ELR+
Sbjct: 69 KSFFKTKLC-FKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAV 127
Query: 92 ---PR--------HPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
PR P ++T++C + G+CP+G C+F H
Sbjct: 128 SLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAH 168
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHEL 88
+KT +C TG C FG+ C FAHG EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIPR-----HP-----RYRTKLCQSYHQDGFCPY 113
C+ + +TG CKFGT CKF H RV PR P R + C Y Q+GFC +
Sbjct: 295 CQYYLKTGDCKFGTSCKFHH--PRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKF 352
Query: 114 GQRCYFIHEEKSV 126
G C F H ++
Sbjct: 353 GSTCKFDHPMGTI 365
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAH--------ELRVIPRHPRYRTKLCQSYHQDGF 110
F C+ + +TG CKFG CKF H + L + R C Y + G
Sbjct: 91 FGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQ 150
Query: 111 CPYGQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQDG 156
C +G C F H + + GT+V +S S+ S DQ G
Sbjct: 151 CKFGITCKFHHPQPA----GTTVPPPPASAPQFYPSVQSLMPDQYG 192
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 64 CRLHDETGVCKFGTGCKFAHG------AHELRVIPRHP-RYRTKLCQSYHQDGFCPYGQR 116
C + TGVC +G C++ H +R ++P R+ CQ Y + G C +G
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGAS 110
Query: 117 CYFIHEEKSVSS 128
C F H + + S
Sbjct: 111 CKFHHPKNAGGS 122
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 TELCRLHDETGVCKFGTGCKFAHGAHELRVIP 92
+ C + + G CKFG+ CKF H +R P
Sbjct: 338 VQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNP 369
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 55 RENLFKTEL----CRLHDETGVCKFGTGCKFAHGAHELRVIPRHP----------RYRTK 100
RE++F C+ + +TG CKFG CKF H + R+IP R
Sbjct: 302 RESIFPERPDQPECQFYMKTGDCKFGAVCKFHH--PKERIIPTPNCALSSLGLPLRPGEP 359
Query: 101 LCQSYHQDGFCPYGQRCYFIHEEKSVS-SRGTSVTSSVSSR 140
+C Y + G C +G C F H +V TS T VS+R
Sbjct: 360 ICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVSAR 400
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIPR-------HP-RYRTKLCQSYHQDGFCPYGQ 115
C+ + +TG CKFG CKF H + + R +P R K C Y + G C +G
Sbjct: 107 CQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGS 166
Query: 116 RCYFIHEEK---------SVSSRGTSVTS 135
C F H + SV S G SVTS
Sbjct: 167 TCKFHHPQPSNTMVAVRGSVYSPGQSVTS 195
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAHGA------HELRVIPRHP-RYRTKLCQSYHQDGFCPYGQR 116
C + TG+C+FG CKF H A R+ +P R CQ Y + G C +G
Sbjct: 62 CSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGAT 121
Query: 117 CYFIH--EEKSVSSR 129
C F H E+ ++++R
Sbjct: 122 CKFHHPREKAAIATR 136
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 46 GRYSHFYHSRENLFKTE----------------LCRLHDETGVCKFGTGCKFAH 83
G F+H +E + T +C + G+CKFG CKF H
Sbjct: 327 GAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDH 380
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+KT +C + TG C FG C FAHGA EL R+ L + +DG P
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAELH------RFGGGLVEEEGKDGVSPNPDTKQ 314
Query: 119 FIHEEKSVSSRGTSVTSSV 137
+ K +S T ++ V
Sbjct: 315 TVQNPKGLSDTTTLLSPGV 333
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 45/120 (37%)
Query: 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRH----------------------- 94
FKT+LC G C + T C FAH ELR P +
Sbjct: 91 FFKTKLC-CKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSV 149
Query: 95 ---PR------------------YRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSV 133
PR ++ + C+ ++ + CPYG+ C F+H+E S + ++
Sbjct: 150 VEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAI 209
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 62 ELCRLHDETGVCKFGTGCKFAHGAHELRVIPRH-------PRYRTKLCQSYHQDGFCPYG 114
+C + +TG CKFGT CK+ H + V+P R K C Y + G C +G
Sbjct: 112 PICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFG 171
Query: 115 QRCYFIHEE 123
C F H E
Sbjct: 172 TTCKFHHPE 180
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRV-----------IPRHPRYRTKLCQSYHQDGFCP 112
C+ + TG CKFG CK+ H EL +P P + C Y Q+G+C
Sbjct: 313 CQYYMRTGDCKFGATCKYHH-PRELSAPKSGYMVNSLCLPLRP--GAQPCAYYAQNGYCR 369
Query: 113 YGQRCYFIHEEKSV 126
YG C + H ++
Sbjct: 370 YGVACKYDHPMGTL 383
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 62 ELCRLHDETGVCKFGTGCKFAH-----------GAHELRVIPRHPRYRTKLCQSYHQDGF 110
E C + TG C FG C++ H GA + R +C+ Y + G
Sbjct: 63 EDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGT 122
Query: 111 CPYGQRCYFIHEEK 124
C +G C + H ++
Sbjct: 123 CKFGTNCKYHHPKQ 136
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 56 ENLFKT----ELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL---------- 101
EN++ E C + TG CKFG+ CKF H I R + R K
Sbjct: 104 ENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLID 163
Query: 102 CQSYHQDGFCPYGQRCYFIH 121
C+ Y + G C YG+ C F H
Sbjct: 164 CKYYFRTGGCKYGETCRFNH 183
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C+ + TG CK+G C+F H A EL + R C Y ++G C YG
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223
Query: 116 RCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCS 151
C F H + + T S S RG+ +S+ + S
Sbjct: 224 ECKFNHPDPTT----IGGTDSPSFRGNNGVSIGTFS 255
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIPRHP--------RYRTKLCQSYHQDGFCPYGQ 115
C + +TG CKF CK+ H + L +P + R +C Y + G C +G
Sbjct: 352 CSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGP 411
Query: 116 RCYFIH 121
C F H
Sbjct: 412 ACRFDH 417
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
E+ +KT+LC+ G+C F C+FAHG EL + + C + CP G
Sbjct: 437 EDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELG--------KKEPCWYFFSGQTCPRGD 488
Query: 116 RCYFIH 121
C F H
Sbjct: 489 TCGFRH 494
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 24/94 (25%)
Query: 60 KTELCRLHDETGV-CKFGTGCKFAHGAHELRVIPR-----------------------HP 95
KT+LC + G+ C G CK+AHG +LR++
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGED 438
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR 129
+Y+TKLC+++ G C + C F H E + +
Sbjct: 439 KYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKK 472
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 55 RENLFKTEL----CRLHDETGVCKFGTGCKFAHGAHE--------LRVIPRHPRYRTKLC 102
REN+F C+ + +TG CKFGT CKF H L + R LC
Sbjct: 236 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLC 295
Query: 103 QSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSS 139
Y + G C +G C F H + + + + S SS
Sbjct: 296 VFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPSS 332
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 64 CRLHDETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C + +TG CKFG CKF H G+ + V+ R C + + G C +G
Sbjct: 93 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 152
Query: 116 RCYFIHEEKS-----VSSRGTSVTSSVSS 139
C F H + VS RG+ V S++ S
Sbjct: 153 TCKFNHPQTQSTNLMVSVRGSPVYSALQS 181
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL--------CQSYHQDGFCPYGQ 115
C + TG+C+FG+ C+F H H+ +++ R + + C+ Y + G C +G
Sbjct: 48 CAYYIRTGLCRFGSTCRFNH-PHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGV 106
Query: 116 RCYFIHEEKSVSSRGTSVTSSVS 138
C F H G+ + +S
Sbjct: 107 TCKFHHPRNKAGIDGSVSVNVLS 129
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 43 NANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLC 102
N+N YSH Y SR K E+C + G C G CK H T LC
Sbjct: 734 NSNCPYSHVYVSR----KAEVCSDFLK-GYCPLGAKCKKKH---------------TLLC 773
Query: 103 QSYHQDGFCPYGQRCYFIHEEKSVSSRGTSV 133
+ + G CP G +C +H + R T+
Sbjct: 774 PDFARRGICPRGSQCQLLHRNQKRHGRRTAA 804
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 50 HFYHSRENLFKTEL----CRLHDETGVCKFGTGCKFAHGAHE--------LRVIPRHPRY 97
++ REN+F C+ + +TG CKFGT CKF H L I R
Sbjct: 262 YYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRP 321
Query: 98 RTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGT-SVTSSVSSRGSGK 144
LC Y + G C +G C F H + + T S T V +GK
Sbjct: 322 GEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETDEVVETSTGK 369
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIP------RHP-RYRTKLCQSYHQDGFCPYGQR 116
C + TG+C+FG+ C+F H VI +P R C+ Y + G C +G
Sbjct: 46 CSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVT 105
Query: 117 CYFIHEEKSVSSRG 130
C F H G
Sbjct: 106 CKFHHPRNKAGIAG 119
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 64 CRLHDETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C + +TG CKFG CKF H G L ++ R C + + G C +G
Sbjct: 91 CEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGG 150
Query: 116 RCYFIHEE 123
C F H +
Sbjct: 151 TCKFNHPQ 158
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVI----PRHPRYRTKL-----------CQSYHQD 108
C + +TG CKFG CKF H A L + P+ P + L C Y +
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKT 485
Query: 109 GFCPYGQRCYFIH 121
G C YG C F H
Sbjct: 486 GTCKYGATCKFDH 498
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRV-------IPRHPRYRTKLCQSYHQDGFCPYGQR 116
C + +T CK+G+ CKF H E V +P P +C Y + G C +G
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERP--SEPMCTFYMKTGKCKFGLS 288
Query: 117 CYFIH-EEKSVSSRGTSVTSSV 137
C F H ++ + S + SSV
Sbjct: 289 CKFHHPKDIQLPSSSQDIGSSV 310
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 64 CRLHDETGVCKFGTGCKFAHGA----------HELRVIPR--HP-RYRTKLCQSYHQDGF 110
C + +T CKFG C+F H E V+P +P R C Y +
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQR 239
Query: 111 CPYGQRCYFIH--EEKSVS 127
C YG +C F H EE +VS
Sbjct: 240 CKYGSKCKFNHPREEAAVS 258
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 63 LCRLHDETGVCKFGTGCKFAH 83
+C + +TG CKFG CKF H
Sbjct: 273 MCTFYMKTGKCKFGLSCKFHH 293
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 43 NANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLC 102
N+N YSH Y SR K E+C + G C G CK H T LC
Sbjct: 739 NSNCPYSHVYVSR----KAEVCSDFLK-GYCPLGAKCKKKH---------------TLLC 778
Query: 103 QSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSS 136
+ + G CP G +C +H + SR + + +
Sbjct: 779 PDFARRGACPRGAQCQLLHRTQKRHSRRAATSPA 812
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELR----------VIPRHPRYRTKLCQSYHQDGFCPY 113
CR TG CK+G CK++H L V+P P C ++ GFC +
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARP--GQPACGNFKAYGFCKF 324
Query: 114 GQRCYFIH 121
G C F H
Sbjct: 325 GANCKFDH 332
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 69 ETGVCKFGTGCKFAH-------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
ETG CK+G CK+ H G V+ R K C Y Q G C +G C F H
Sbjct: 95 ETGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHH 154
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 64 CRLHDETGVCKFGTGCKFAH 83
C + +TG+C+FG CKF H
Sbjct: 135 CPYYMQTGLCRFGVACKFHH 154
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 49/141 (34%)
Query: 57 NLF-KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRH--------PR----------- 96
N+F KT +C G C+ G C FAHG +LR P + P
Sbjct: 102 NIFYKTRMCAKF-RAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160
Query: 97 -----------------------YRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSV 133
R KLC+ + CPYG RC FIHE+ S
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE---- 216
Query: 134 TSSVSSRGSGKISLSSCSSDQ 154
S R S IS+ + ++DQ
Sbjct: 217 -DSGKLRESSVISVGATAADQ 236
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHEL 88
+KT LC D TG C FG C FAHG EL
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 97 YRTKLCQSYHQDGFCPYGQRCYFIH 121
++T+LC + G CP+G +C+F H
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAH 294
>sp|Q06053|DUS3_YEAST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS3 PE=1
SV=2
Length = 668
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 66 LHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL---CQSYHQDGFCPYGQRCYFI 120
+H + C FG C+F H + L + + P + + C ++ GFCP G +C F+
Sbjct: 102 IHGDISKCSFGDNCRFVHDIN-LYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFL 158
>sp|A7A1S5|DUS3_YEAS7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1
Length = 668
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 66 LHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL---CQSYHQDGFCPYGQRCYFI 120
+H + C FG C+F H + L + + P + + C ++ GFCP G +C F+
Sbjct: 102 IHGDISKCSFGDNCRFVHDIN-LYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFL 158
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAH--------ELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C+ + +TG CKFG+ CK+ H + L + R ++ C Y Q GFC +G
Sbjct: 305 CQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGP 364
Query: 116 RCYFIHEEKSVS 127
C F H ++S
Sbjct: 365 TCKFDHPMGTLS 376
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 41 TWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAH---GAHELRVI--PRHP 95
N G+ +H E + +C + + G CKFG+ CK+ H G+ + ++ +P
Sbjct: 85 VLNGGGKTTHSAEYPERPGQ-PVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYP 143
Query: 96 -RYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
R K C Y + G C +G C F H E
Sbjct: 144 LRSGEKDCTYYVKTGHCKFGSTCKFHHPE 172
>sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1
SV=2
Length = 810
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 69 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS 128
+ G C+ G C++ H E + P Y++ C Q G CP G C F H E+ S
Sbjct: 268 DPGKCENGDACQYCHTRTEQQFHPE--IYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLS 325
Query: 129 RGTSVTSSVSS 139
+S+VSS
Sbjct: 326 DDLQPSSAVSS 336
>sp|Q6EE22|UNK_CANFA RING finger protein unkempt homolog OS=Canis familiaris GN=UNK PE=2
SV=1
Length = 810
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 69 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS 128
+ G C+ G C++ H E + P Y++ C Q G CP G C F H E+ S
Sbjct: 268 DPGKCENGDACQYCHTRTEQQFHPE--IYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLS 325
Query: 129 RGTSVTSSVSS 139
+S+VSS
Sbjct: 326 DDLQPSSTVSS 336
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10 OS=Oryza sativa
subsp. japonica GN=Os01g0738400 PE=2 SV=1
Length = 225
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 71 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRG 130
C G+GC FAHG E + P RYRT+ C+S G C+F H +K + G
Sbjct: 99 AACPRGSGCPFAHGTFETWLHPS--RYRTRPCRS----GMLCARPVCFFAHNDKELRIVG 152
Query: 131 TSVTSSVSS 139
++ S
Sbjct: 153 DDAAAATPS 161
>sp|Q8BL48|UNK_MOUSE RING finger protein unkempt homolog OS=Mus musculus GN=Unk PE=1
SV=1
Length = 810
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 69 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS 128
+ G C+ G C++ H E + P Y++ C Q G CP G C F H E S
Sbjct: 268 DPGKCENGDACQYCHTRTEQQFHPE--IYKSTKCNDMQQAGSCPRGPFCAFAHIEPPPLS 325
Query: 129 RGTSVTSSVSS 139
+S+VSS
Sbjct: 326 DDVQPSSAVSS 336
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSY-HQD-----GFCP 112
+KTE C+ +C+ G C + H + + R PR +YR+ C + H D G C
Sbjct: 216 YKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 113 YGQRCYFIH 121
G C + H
Sbjct: 274 NGDACQYCH 282
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 56 ENLFKTEL----CRLHDETGVCKFGTGCKFAHGAHELRVIPR--------HPRYRTKLCQ 103
EN+F C+ + +TG CKFG CKF H L P R +C
Sbjct: 312 ENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCT 371
Query: 104 SYHQDGFCPYGQRCYFIHEEKSVS-SRGTSVTSSVSS 139
Y + G C +G C F H ++ TS VSS
Sbjct: 372 FYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSS 408
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 64 CRLHDETGVCKFGTGCKFAH------GAHELRVIPRHP-RYRTKLCQSYHQDGFCPYGQR 116
C + TG+C+FG CKF H R+ +P R CQ Y + G C +G
Sbjct: 72 CSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGAT 131
Query: 117 CYFIH--EEKSVSSR 129
C F H E+ ++++R
Sbjct: 132 CKFHHPREKAALANR 146
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAH--------ELRVIPRHPRYRTKLCQSYHQDGFCPYGQ 115
C+ + +TG CKFG CKF H +L V+ R K C Y + G C +
Sbjct: 117 CQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFAS 176
Query: 116 RCYFIHEEKS 125
C F H + S
Sbjct: 177 TCKFHHPQPS 186
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELR----------VIPRHPRYRTKLCQSYHQDGFCPY 113
CR TG CK+G CK++H + V+P P C ++ GFC +
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARP--GQPACGNFRSYGFCKF 324
Query: 114 GQRCYFIH 121
G C F H
Sbjct: 325 GPNCKFDH 332
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 42 WNANGRYSHFYHSRENL--FKTEL--------CRLHDETGVCKFGTGCKFAH-----GAH 86
+ ++ RY+H H +++ +K EL C +TG CK+G CK+ H GA
Sbjct: 64 YGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQ 123
Query: 87 EL--RVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
+ VI R K C Y + G C +G C F H +
Sbjct: 124 PVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQ 162
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 64 CRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL--------CQSYHQDGFCPYGQ 115
C+ + TG+C +G+ C++ H H + + Y+ +L C+ + + G C YG
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDV---AYYKEELPERIGQPDCEYFLKTGACKYGP 109
Query: 116 RCYFIHEE 123
C + H +
Sbjct: 110 TCKYHHPK 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,703,583
Number of Sequences: 539616
Number of extensions: 2726526
Number of successful extensions: 6291
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 5610
Number of HSP's gapped (non-prelim): 589
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)