Query psy15047
Match_columns 165
No_of_seqs 183 out of 1183
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:03:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677|consensus 99.7 3.7E-17 8E-22 139.5 6.4 96 34-129 92-207 (332)
2 KOG1595|consensus 99.3 2.2E-12 4.8E-17 115.9 4.8 91 40-137 215-305 (528)
3 COG5063 CTH1 CCCH-type Zn-fing 99.3 4.7E-12 1E-16 107.4 5.3 96 32-127 234-342 (351)
4 KOG1677|consensus 99.0 4.2E-10 9.1E-15 96.1 4.1 83 10-92 103-208 (332)
5 COG5063 CTH1 CCCH-type Zn-fing 98.9 5E-10 1.1E-14 95.2 3.5 76 56-131 223-306 (351)
6 PF00642 zf-CCCH: Zinc finger 98.8 1E-09 2.2E-14 61.9 0.0 26 59-84 1-26 (27)
7 PF00642 zf-CCCH: Zinc finger 98.6 7.1E-09 1.5E-13 58.4 -0.2 27 97-123 1-27 (27)
8 KOG1040|consensus 98.5 1.2E-07 2.7E-12 81.9 4.0 74 38-123 56-129 (325)
9 smart00356 ZnF_C3H1 zinc finge 98.3 4.9E-07 1.1E-11 49.9 2.3 25 59-84 2-26 (27)
10 KOG2333|consensus 98.2 6.4E-07 1.4E-11 80.8 1.7 62 60-123 75-138 (614)
11 KOG2494|consensus 98.0 1.6E-06 3.5E-11 74.5 1.4 64 58-128 34-98 (331)
12 KOG1040|consensus 98.0 3E-06 6.5E-11 73.3 2.8 91 33-128 81-187 (325)
13 smart00356 ZnF_C3H1 zinc finge 98.0 3.8E-06 8.3E-11 46.3 2.2 26 97-123 2-27 (27)
14 KOG1763|consensus 97.9 1.8E-06 4E-11 73.4 -0.2 69 57-126 88-193 (343)
15 KOG1595|consensus 97.6 4.2E-05 9.1E-10 69.5 3.7 67 55-126 195-262 (528)
16 COG5252 Uncharacterized conser 97.6 1.4E-05 3E-10 66.5 -0.5 68 57-125 81-177 (299)
17 KOG1492|consensus 97.5 4.8E-05 1E-09 63.3 2.4 63 60-124 205-284 (377)
18 KOG1492|consensus 97.5 7E-05 1.5E-09 62.3 2.5 84 34-124 212-313 (377)
19 COG5084 YTH1 Cleavage and poly 97.3 0.00065 1.4E-08 58.0 6.3 28 58-86 101-128 (285)
20 COG5084 YTH1 Cleavage and poly 97.3 0.0014 3E-08 56.0 8.2 82 34-126 109-192 (285)
21 KOG2185|consensus 96.9 0.00054 1.2E-08 60.9 2.0 27 97-124 138-164 (486)
22 PF14608 zf-CCCH_2: Zinc finge 96.2 0.0032 7E-08 32.5 1.6 19 63-84 1-19 (19)
23 KOG2185|consensus 96.1 0.0021 4.7E-08 57.1 1.1 28 59-87 138-165 (486)
24 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0061 1.3E-07 31.4 1.7 19 101-122 1-19 (19)
25 COG5152 Uncharacterized conser 95.5 0.0048 1E-07 50.4 0.8 31 58-88 138-168 (259)
26 COG5152 Uncharacterized conser 94.5 0.014 3E-07 47.8 0.7 29 98-126 140-168 (259)
27 KOG2333|consensus 94.4 0.021 4.4E-07 52.3 1.8 46 38-83 88-136 (614)
28 KOG2494|consensus 92.6 0.1 2.3E-06 45.3 2.9 86 37-125 45-155 (331)
29 KOG2202|consensus 92.1 0.052 1.1E-06 45.7 0.5 28 97-125 150-177 (260)
30 KOG1813|consensus 91.8 0.052 1.1E-06 46.6 0.2 31 58-88 183-213 (313)
31 KOG4791|consensus 91.6 0.13 2.8E-06 47.0 2.5 78 37-127 11-88 (667)
32 KOG1039|consensus 91.1 0.08 1.7E-06 46.4 0.6 24 62-86 9-32 (344)
33 KOG1039|consensus 90.3 0.14 3.1E-06 44.9 1.5 25 100-125 9-33 (344)
34 KOG3702|consensus 89.5 0.53 1.1E-05 44.4 4.5 83 37-126 550-648 (681)
35 KOG1813|consensus 89.0 0.12 2.6E-06 44.5 -0.0 29 98-126 185-213 (313)
36 KOG4791|consensus 88.9 0.12 2.5E-06 47.3 -0.1 55 62-127 4-58 (667)
37 KOG1763|consensus 88.1 0.11 2.4E-06 44.7 -0.7 33 96-129 89-121 (343)
38 PF10650 zf-C3H1: Putative zin 83.0 0.79 1.7E-05 24.8 1.3 20 101-121 2-21 (23)
39 KOG3702|consensus 81.9 3.2 7E-05 39.3 5.6 74 33-124 581-666 (681)
40 COG5252 Uncharacterized conser 77.9 0.46 1E-05 39.9 -1.1 34 96-130 82-115 (299)
41 KOG2202|consensus 66.6 3.4 7.4E-05 34.9 1.6 30 55-85 146-175 (260)
42 KOG0153|consensus 51.7 6.8 0.00015 34.7 0.9 26 60-86 160-185 (377)
43 COG5175 MOT2 Transcriptional r 29.6 19 0.00042 32.0 0.2 27 99-126 202-228 (480)
44 PF06373 CART: Cocaine and amp 27.5 30 0.00064 23.8 0.8 31 71-119 37-67 (73)
45 PF08098 ATX_III: Anemonia sul 27.2 34 0.00073 18.9 0.8 15 63-80 8-22 (27)
46 PF10283 zf-CCHH: Zinc-finger 25.1 21 0.00046 19.8 -0.2 9 110-118 2-10 (26)
47 KOG0153|consensus 23.0 43 0.00093 29.8 1.2 25 99-124 161-185 (377)
48 KOG2135|consensus 21.7 81 0.0018 29.2 2.7 31 59-89 210-240 (526)
No 1
>KOG1677|consensus
Probab=99.68 E-value=3.7e-17 Score=139.50 Aligned_cols=96 Identities=39% Similarity=0.843 Sum_probs=81.2
Q ss_pred cCCCCCCCCCCCCCCCCCC-------------CcCccCCccccccccccCCCCCC-CCCCccccCCcccc------cccC
Q psy15047 34 YSSKPTDTWNANGRYSHFY-------------HSRENLFKTELCRLHDETGVCKF-GTGCKFAHGAHELR------VIPR 93 (165)
Q Consensus 34 ~~~~~~c~~~~~~~~~h~~-------------~~~~~~~KT~lC~~y~~~G~C~~-Gd~C~FaH~~~elr------~~~~ 93 (165)
+...+.|.++..|.+.|.. ......+||.+|.+|...|.|+| |++|+|+|+.++++ ....
T Consensus 92 ~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~ 171 (332)
T KOG1677|consen 92 YLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGN 171 (332)
T ss_pred ccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcC
Confidence 4556677777777776664 23456799999999999999999 99999999999999 4456
Q ss_pred CCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy15047 94 HPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR 129 (165)
Q Consensus 94 ~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~ 129 (165)
+++|+|++|..|+++|.|+||.+|+|+|+..+....
T Consensus 172 ~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~ 207 (332)
T KOG1677|consen 172 PPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS 207 (332)
T ss_pred CCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence 789999999999999999999999999998866554
No 2
>KOG1595|consensus
Probab=99.29 E-value=2.2e-12 Score=115.85 Aligned_cols=91 Identities=26% Similarity=0.594 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCcc
Q psy15047 40 DTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119 (165)
Q Consensus 40 c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F 119 (165)
|||.+.+..++.+..+...|..++|+-|. +|.|..||.|.|+|++-| .+.++.+|+|.+|+. .|.|+. .-|.|
T Consensus 215 CPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfE--cwLHPa~YRT~~CkD---g~~C~R-rvCfF 287 (528)
T KOG1595|consen 215 CPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFE--CWLHPARYRTRKCKD---GGYCPR-RVCFF 287 (528)
T ss_pred CCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceeh--hhcCHHHhccccccC---CCCCcc-ceEee
Confidence 45555555555666677789999999996 799999999999999977 455667899999995 699999 88999
Q ss_pred CCCCCCCCCCCCCccccc
Q psy15047 120 IHEEKSVSSRGTSVTSSV 137 (165)
Q Consensus 120 ~H~~~~~~~~~~~~~s~~ 137 (165)
||.+++|+.......+.+
T Consensus 288 AH~~eqLR~l~~s~~s~~ 305 (528)
T KOG1595|consen 288 AHSPEQLRPLPPSTGSDR 305 (528)
T ss_pred ecChHHhcccCCCCCCCC
Confidence 999999987776544433
No 3
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.27 E-value=4.7e-12 Score=107.41 Aligned_cols=96 Identities=22% Similarity=0.451 Sum_probs=83.8
Q ss_pred cccCCCCCCCC---CCCCCCC---CCCCc-----CccCCccccccccccCCCCCCCCCCccccCCcccccccCCC--Ccc
Q psy15047 32 ERYSSKPTDTW---NANGRYS---HFYHS-----RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHP--RYR 98 (165)
Q Consensus 32 ~~~~~~~~c~~---~~~~~~~---h~~~~-----~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~--~~k 98 (165)
+.+...|+|++ |..|+|+ |+... +.+.|+|++|..|...|.|+||.+|.|+|+..+...+..++ .|+
T Consensus 234 ~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~ 313 (351)
T COG5063 234 ESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYL 313 (351)
T ss_pred hccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhcccccccccccc
Confidence 45788999999 9999998 88753 55679999999999999999999999999998877666565 788
Q ss_pred ccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 99 TKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 99 t~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
..+|+.++..|.|++|.+|.|.|+..-+.
T Consensus 314 ~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 314 DGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred ccccccccccCccCCCCchhhccccchhh
Confidence 89999999999999999999999876553
No 4
>KOG1677|consensus
Probab=98.97 E-value=4.2e-10 Score=96.12 Aligned_cols=83 Identities=25% Similarity=0.508 Sum_probs=63.3
Q ss_pred cCCCCcch-hhhhhh--------hccCcccc--cccCCCCCCCC-CCCCCCCCCCCc-----------CccCCccccccc
Q psy15047 10 HYPWDHNE-KMDKHW--------ASLRPATE--ERYSSKPTDTW-NANGRYSHFYHS-----------RENLFKTELCRL 66 (165)
Q Consensus 10 ~~p~~~n~-~~~~~~--------~~~~~~~~--~~~~~~~~c~~-~~~~~~~h~~~~-----------~~~~~KT~lC~~ 66 (165)
-+++++.. .+++.. ...+++++ ..+...++|+| +.+|+|+|..+. .+.+|||++|.+
T Consensus 103 ~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~ 182 (332)
T KOG1677|consen 103 SCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPK 182 (332)
T ss_pred CCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCc
Confidence 45667776 444433 22333444 34789999999 999999998763 245799999999
Q ss_pred cccCCCCCCCCCCccccCCccccccc
Q psy15047 67 HDETGVCKFGTGCKFAHGAHELRVIP 92 (165)
Q Consensus 67 y~~~G~C~~Gd~C~FaH~~~elr~~~ 92 (165)
|++.|.|+||.+|+|+|+..+.+...
T Consensus 183 f~~tG~C~yG~rC~F~H~~~~~~~~~ 208 (332)
T KOG1677|consen 183 FQKTGLCKYGSRCRFIHGEPEDRASN 208 (332)
T ss_pred cccCCCCCCCCcCeecCCCccccccc
Confidence 99899999999999999998876644
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.94 E-value=5e-10 Score=95.22 Aligned_cols=76 Identities=38% Similarity=0.871 Sum_probs=66.8
Q ss_pred ccCCcc--ccccccccCCCCCC---CCCCccc---cCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 56 ENLFKT--ELCRLHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 56 ~~~~KT--~lC~~y~~~G~C~~---Gd~C~Fa---H~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
...+|+ .+|.-|-..|.|++ |+.|+|+ ||..++........++|++|..|...|+|+||.+|.|+|+.....
T Consensus 223 ~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i 302 (351)
T COG5063 223 KPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI 302 (351)
T ss_pred chhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence 345788 99999988999999 9999999 999998777666779999999999999999999999999998765
Q ss_pred CCCC
Q psy15047 128 SRGT 131 (165)
Q Consensus 128 ~~~~ 131 (165)
....
T Consensus 303 e~~~ 306 (351)
T COG5063 303 EMYE 306 (351)
T ss_pred cccc
Confidence 5443
No 6
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.78 E-value=1e-09 Score=61.88 Aligned_cols=26 Identities=58% Similarity=1.283 Sum_probs=16.9
Q ss_pred CccccccccccCCCCCCCCCCccccC
Q psy15047 59 FKTELCRLHDETGVCKFGTGCKFAHG 84 (165)
Q Consensus 59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~ 84 (165)
||+++|++|+..|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 46777777776677777777777776
No 7
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.60 E-value=7.1e-09 Score=58.40 Aligned_cols=27 Identities=48% Similarity=1.223 Sum_probs=21.8
Q ss_pred ccccccccccccccCCCCCCCccCCCC
Q psy15047 97 YRTKLCQSYHQDGFCPYGQRCYFIHEE 123 (165)
Q Consensus 97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~ 123 (165)
+++++|++|+..|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578999999989999999999999973
No 8
>KOG1040|consensus
Probab=98.47 E-value=1.2e-07 Score=81.87 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCC
Q psy15047 38 PTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRC 117 (165)
Q Consensus 38 ~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C 117 (165)
..|.-+..|...|.... ...++++|++|+ .|.|..||.|.|+|.. ++. +...|.+|...|.|..|..|
T Consensus 56 ~~~~~~~~~~~~~~~~~--~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c 123 (325)
T KOG1040|consen 56 KPCERGPICPKSHNDVS--DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDC 123 (325)
T ss_pred CCccCCCCCccccCCcc--ccCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCC
Confidence 44555566665555432 478899999998 8999999999999987 332 23345555555555555555
Q ss_pred ccCCCC
Q psy15047 118 YFIHEE 123 (165)
Q Consensus 118 ~F~H~~ 123 (165)
-|.|..
T Consensus 124 ~y~h~d 129 (325)
T KOG1040|consen 124 PYLHGD 129 (325)
T ss_pred cccCCC
Confidence 555555
No 9
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.29 E-value=4.9e-07 Score=49.94 Aligned_cols=25 Identities=52% Similarity=1.213 Sum_probs=18.0
Q ss_pred CccccccccccCCCCCCCCCCccccC
Q psy15047 59 FKTELCRLHDETGVCKFGTGCKFAHG 84 (165)
Q Consensus 59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~ 84 (165)
+|+.+|++| ..|.|.+|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 566677777 4777777777777775
No 10
>KOG2333|consensus
Probab=98.18 E-value=6.4e-07 Score=80.76 Aligned_cols=62 Identities=27% Similarity=0.677 Sum_probs=49.5
Q ss_pred ccccccccccC--CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCC
Q psy15047 60 KTELCRLHDET--GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE 123 (165)
Q Consensus 60 KT~lC~~y~~~--G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~ 123 (165)
+..||+..+.. ..|.||++|+|.|+++...... +.....-|+.|.+.|.|+||..|||+-..
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aH 138 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--APDIGPSCPVFESLGFCPYGFKCRFLGAH 138 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhcc--CcccCCccceeeccccCCccceeehhhcc
Confidence 57899999755 4799999999999997754432 22345679999999999999999997443
No 11
>KOG2494|consensus
Probab=98.04 E-value=1.6e-06 Score=74.51 Aligned_cols=64 Identities=27% Similarity=0.570 Sum_probs=50.5
Q ss_pred CCccccccccccCCCCCCCCC-CccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy15047 58 LFKTELCRLHDETGVCKFGTG-CKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS 128 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd~-C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~ 128 (165)
+..-++||-|+ .|.|.+||+ |+|+|......+. .-+-..|-.|+ .|.|.. ++|+|+|+...++.
T Consensus 34 wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~----~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkd 98 (331)
T KOG2494|consen 34 WLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQVS----NGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKD 98 (331)
T ss_pred hhHHHHHHHHH-hccccCCCccccccCCCCCCCcc----CCeEEEEeccc-cCccCc-ccceecCCChhhhh
Confidence 45569999998 889999999 9999988644321 12445699998 899976 67999999987754
No 12
>KOG1040|consensus
Probab=98.02 E-value=3e-06 Score=73.33 Aligned_cols=91 Identities=25% Similarity=0.539 Sum_probs=67.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCccccccc---------------CCCCc
Q psy15047 33 RYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------------RHPRY 97 (165)
Q Consensus 33 ~~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~~~~ 97 (165)
++.-.+.|+++..|.|.|.+ ...|...|.||...|.|..|..|.|.|+..+..... .....
T Consensus 81 K~~l~glC~kgD~C~Flhe~----~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~ 156 (325)
T KOG1040|consen 81 KHWLRGLCKKGDQCEFLHEY----DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHE 156 (325)
T ss_pred hhhhhhhhhccCcCcchhhh----hhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhh
Confidence 45667999999999999987 456677899998899999999999999984322110 01123
Q ss_pred cccccccccccccCCCCCC-CccCCCCCCCCC
Q psy15047 98 RTKLCQSYHQDGFCPYGQR-CYFIHEEKSVSS 128 (165)
Q Consensus 98 kt~~C~~f~~~G~C~~G~~-C~F~H~~~~~~~ 128 (165)
+..+|..|. .|.|+-|.. |.+.|..-++..
T Consensus 157 ~~~~c~~y~-~gfC~~g~q~c~~~hp~~~~~~ 187 (325)
T KOG1040|consen 157 RKVLCPPYN-AGFCPKGPQRCDMLHPEFQQPP 187 (325)
T ss_pred cccCCCchh-hhhccCCCCcccccCCCCCCCh
Confidence 346788776 778888877 888887776655
No 13
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.02 E-value=3.8e-06 Score=46.28 Aligned_cols=26 Identities=50% Similarity=1.329 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCCCCCccCCCC
Q psy15047 97 YRTKLCQSYHQDGFCPYGQRCYFIHEE 123 (165)
Q Consensus 97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~ 123 (165)
+++.+|++| ..|.|++|+.|+|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 467799999 59999999999999973
No 14
>KOG1763|consensus
Probab=97.93 E-value=1.8e-06 Score=73.43 Aligned_cols=69 Identities=28% Similarity=0.618 Sum_probs=51.3
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCcccccccC------------------------C--CCcc-ccccccccc--
Q psy15047 57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR------------------------H--PRYR-TKLCQSYHQ-- 107 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~------------------------~--~~~k-t~~C~~f~~-- 107 (165)
...|+++|-+|. .|.|..|+.|.|+|+....+.... + +... ..+|+||+.
T Consensus 88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv 166 (343)
T KOG1763|consen 88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV 166 (343)
T ss_pred CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence 457999999996 899999999999999876543210 1 1111 247999975
Q ss_pred ----ccc---CCCCC-CCccCCCCCCC
Q psy15047 108 ----DGF---CPYGQ-RCYFIHEEKSV 126 (165)
Q Consensus 108 ----~G~---C~~G~-~C~F~H~~~~~ 126 (165)
.|| ||+|- .|.|.|..++.
T Consensus 167 E~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 167 ENGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred hcCCccceeECCCCCCeeeeeecCCcc
Confidence 443 99975 89999998765
No 15
>KOG1595|consensus
Probab=97.64 E-value=4.2e-05 Score=69.50 Aligned_cols=67 Identities=30% Similarity=0.527 Sum_probs=54.1
Q ss_pred CccCCccccccccccCCCCCCCCCCcccc-CCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047 55 RENLFKTELCRLHDETGVCKFGTGCKFAH-GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH-~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
+...||++.|.-- .|.-+..|.|+| +...-|..++.-.|...+|+.|. .|.|+.|+.|.|+|+.=|-
T Consensus 195 rMy~fKir~C~R~----~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc 262 (528)
T KOG1595|consen 195 RMYSFKIRRCSRP----RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC 262 (528)
T ss_pred EEEeeeecccCCc----cCCCcccCCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceehh
Confidence 4556899999765 689999999999 55555555555568889999997 6999999999999997543
No 16
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.56 E-value=1.4e-05 Score=66.49 Aligned_cols=68 Identities=35% Similarity=0.681 Sum_probs=51.6
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCcccccccCC-------------C------Cccccccccccc------cc--
Q psy15047 57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRH-------------P------RYRTKLCQSYHQ------DG-- 109 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~-------------~------~~kt~~C~~f~~------~G-- 109 (165)
...|+++|-.|. .+.|..|+.|.|+|+.++.|....+ + ..-.++|+||.. .|
T Consensus 81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 457999999997 8999999999999998876653211 1 112367998864 23
Q ss_pred -cCCCC-CCCccCCCCCC
Q psy15047 110 -FCPYG-QRCYFIHEEKS 125 (165)
Q Consensus 110 -~C~~G-~~C~F~H~~~~ 125 (165)
.||+| .+|.|.|...+
T Consensus 160 W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeCCCCCceeeeeeccCc
Confidence 39998 68999999876
No 17
>KOG1492|consensus
Probab=97.53 E-value=4.8e-05 Score=63.29 Aligned_cols=63 Identities=25% Similarity=0.643 Sum_probs=36.2
Q ss_pred ccccccccccCCCCCCCCCCccccCCccccccc---------------CCC--CccccccccccccccCCCCCCCccCCC
Q psy15047 60 KTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------------RHP--RYRTKLCQSYHQDGFCPYGQRCYFIHE 122 (165)
Q Consensus 60 KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~~--~~kt~~C~~f~~~G~C~~G~~C~F~H~ 122 (165)
..+.|+||..+|.|-.|..|+|.|....-..-+ .|. ..+...|++|+ .|.|.. .+|+|.|-
T Consensus 205 savycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfl-lgkcnn-pncryvhi 282 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNN-PNCRYVHI 282 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCC-CCceEEEE
Confidence 446677776677777777777777653211000 000 12334577776 777744 67777765
Q ss_pred CC
Q psy15047 123 EK 124 (165)
Q Consensus 123 ~~ 124 (165)
.-
T Consensus 283 hy 284 (377)
T KOG1492|consen 283 HY 284 (377)
T ss_pred ee
Confidence 43
No 18
>KOG1492|consensus
Probab=97.46 E-value=7e-05 Score=62.34 Aligned_cols=84 Identities=21% Similarity=0.452 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCccccccc---------CC-------CCc
Q psy15047 34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------RH-------PRY 97 (165)
Q Consensus 34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------~~-------~~~ 97 (165)
|-.+|.|--|+-|+|-|.. ....+|+.|+ +|.|...+.|...|..+..|.+. .+ ..|
T Consensus 212 ynangicgkgaacrfvhep------trkticpkfl-ngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihy 284 (377)
T KOG1492|consen 212 YNANGICGKGAACRFVHEP------TRKTICPKFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHY 284 (377)
T ss_pred ecCCCcccCCceeeeeccc------cccccChHHh-cCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEee
Confidence 5788999999999887764 3446899998 89999999999999887655432 11 112
Q ss_pred --cccccccccccccCCCCCCCccCCCCC
Q psy15047 98 --RTKLCQSYHQDGFCPYGQRCYFIHEEK 124 (165)
Q Consensus 98 --kt~~C~~f~~~G~C~~G~~C~F~H~~~ 124 (165)
...+|--|.+.|.|..|..|+-.|-..
T Consensus 285 senapicfefakygfcelgtscknqhilq 313 (377)
T KOG1492|consen 285 SENAPICFEFAKYGFCELGTSCKNQHILQ 313 (377)
T ss_pred cCCCceeeeehhcceeccccccccceeee
Confidence 346799999999999999999888654
No 19
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.29 E-value=0.00065 Score=57.95 Aligned_cols=28 Identities=32% Similarity=0.733 Sum_probs=16.9
Q ss_pred CCccccccccccCCCCCCCCCCccccCCc
Q psy15047 58 LFKTELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
.+..++|++|. .|.|+.|..|.|+|+..
T Consensus 101 ~~s~V~c~~~~-~g~c~s~~~c~~lh~~d 128 (285)
T COG5084 101 LSSSVVCKFFL-RGLCKSGFSCEFLHEYD 128 (285)
T ss_pred ccCCcccchhc-cccCcCCCccccccCCC
Confidence 45556666664 55666666666666554
No 20
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.28 E-value=0.0014 Score=55.99 Aligned_cols=82 Identities=27% Similarity=0.525 Sum_probs=67.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccc--cccC
Q psy15047 34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ--DGFC 111 (165)
Q Consensus 34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~--~G~C 111 (165)
+...+.|+-+..|.+.|....... ....|++|...|.|..|..|.+.|.... .....|..|.. .+.|
T Consensus 109 ~~~~g~c~s~~~c~~lh~~d~~~s--~~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~ 177 (285)
T COG5084 109 FFLRGLCKSGFSCEFLHEYDLRSS--QGPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFC 177 (285)
T ss_pred hhccccCcCCCccccccCCCcccc--cCCCcccccccceeccCCCCCccccCcc---------cccccccccCccccccc
Confidence 567899999999999999876554 6788999976999999999999998722 23346776653 7899
Q ss_pred CCCCCCccCCCCCCC
Q psy15047 112 PYGQRCYFIHEEKSV 126 (165)
Q Consensus 112 ~~G~~C~F~H~~~~~ 126 (165)
++|..|+|.|....+
T Consensus 178 p~g~~c~~~H~~~~~ 192 (285)
T COG5084 178 PLGASCKFSHTLKRV 192 (285)
T ss_pred CCCCccccccccccc
Confidence 999999999998855
No 21
>KOG2185|consensus
Probab=96.86 E-value=0.00054 Score=60.85 Aligned_cols=27 Identities=30% Similarity=0.728 Sum_probs=22.7
Q ss_pred ccccccccccccccCCCCCCCccCCCCC
Q psy15047 97 YRTKLCQSYHQDGFCPYGQRCYFIHEEK 124 (165)
Q Consensus 97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~ 124 (165)
..+++|+||+ .|.|+||.+|||.|+..
T Consensus 138 ~sMkpC~ffL-eg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 138 ESMKPCKFFL-EGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhhccchHhh-ccccccCcccccccCcc
Confidence 4567899998 88999999999999876
No 22
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.19 E-value=0.0032 Score=32.46 Aligned_cols=19 Identities=32% Similarity=0.850 Sum_probs=12.5
Q ss_pred cccccccCCCCCCCCCCccccC
Q psy15047 63 LCRLHDETGVCKFGTGCKFAHG 84 (165)
Q Consensus 63 lC~~y~~~G~C~~Gd~C~FaH~ 84 (165)
+|++|. .|++|++|.|+|.
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 366664 2777777777773
No 23
>KOG2185|consensus
Probab=96.11 E-value=0.0021 Score=57.14 Aligned_cols=28 Identities=32% Similarity=0.850 Sum_probs=24.3
Q ss_pred CccccccccccCCCCCCCCCCccccCCcc
Q psy15047 59 FKTELCRLHDETGVCKFGTGCKFAHGAHE 87 (165)
Q Consensus 59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e 87 (165)
...++|+||+ .|.|+||++|+|.|+...
T Consensus 138 ~sMkpC~ffL-eg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 138 ESMKPCKFFL-EGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hhhccchHhh-ccccccCcccccccCccc
Confidence 3458999998 899999999999998753
No 24
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.85 E-value=0.0061 Score=31.41 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.0
Q ss_pred ccccccccccCCCCCCCccCCC
Q psy15047 101 LCQSYHQDGFCPYGQRCYFIHE 122 (165)
Q Consensus 101 ~C~~f~~~G~C~~G~~C~F~H~ 122 (165)
+|++|. .|++|+.|.|.|+
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 588765 4999999999995
No 25
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.53 E-value=0.0048 Score=50.45 Aligned_cols=31 Identities=32% Similarity=0.785 Sum_probs=27.2
Q ss_pred CCccccccccccCCCCCCCCCCccccCCccc
Q psy15047 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHEL 88 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~el 88 (165)
-+...+|+-|..+|+|-|||.|.|.|+.++.
T Consensus 138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred ecCcccccchhhcccccCCchhhhhhhhhhh
Confidence 3566899999889999999999999998754
No 26
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.47 E-value=0.014 Score=47.82 Aligned_cols=29 Identities=31% Similarity=1.070 Sum_probs=25.5
Q ss_pred cccccccccccccCCCCCCCccCCCCCCC
Q psy15047 98 RTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 98 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
...+|+.|..+|+|-||+.|.|+|...+.
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhhhh
Confidence 34679999999999999999999998754
No 27
>KOG2333|consensus
Probab=94.44 E-value=0.021 Score=52.29 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCCCCcCccC---CccccccccccCCCCCCCCCCcccc
Q psy15047 38 PTDTWNANGRYSHFYHSRENL---FKTELCRLHDETGVCKFGTGCKFAH 83 (165)
Q Consensus 38 ~~c~~~~~~~~~h~~~~~~~~---~KT~lC~~y~~~G~C~~Gd~C~FaH 83 (165)
..|+|+.+|+|.|.+...-.. -=..-|+.|.+.|.|+||-+|+|+-
T Consensus 88 ~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 88 SKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred ccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhh
Confidence 689999999999988642222 2236799999899999999999973
No 28
>KOG2494|consensus
Probab=92.58 E-value=0.1 Score=45.28 Aligned_cols=86 Identities=17% Similarity=0.313 Sum_probs=60.0
Q ss_pred CCCCCCCCC-CCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCcccccccC-------------------CC
Q psy15047 37 KPTDTWNAN-GRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR-------------------HP 95 (165)
Q Consensus 37 ~~~c~~~~~-~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~-------------------~~ 95 (165)
.+.|.=+.. |+|.|+... .-+.-+-..|-.++ +|.|.+ ++|+|+|...+++.... ..
T Consensus 45 rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~ingrn~l~lq~~~aA~~~q~~ 122 (331)
T KOG2494|consen 45 RNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKINGRNNLILQKTAAAMLAQQM 122 (331)
T ss_pred hccccCCCccccccCCCCCCCccCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhhcccccHHHHHHHHhhhcccc
Confidence 477877777 999998753 33456678899998 889998 77999999887643210 01
Q ss_pred Cc-cccccc--cccccccCCCC-CCCccCCCCCC
Q psy15047 96 RY-RTKLCQ--SYHQDGFCPYG-QRCYFIHEEKS 125 (165)
Q Consensus 96 ~~-kt~~C~--~f~~~G~C~~G-~~C~F~H~~~~ 125 (165)
.. .+.+|+ .|. .+.|.-| ..|+|.|-...
T Consensus 123 ~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~ 155 (331)
T KOG2494|consen 123 QGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPP 155 (331)
T ss_pred cCCCcccccccccc-ccccccCCCccccccccCC
Confidence 12 456777 554 6677765 46998887774
No 29
>KOG2202|consensus
Probab=92.12 E-value=0.052 Score=45.69 Aligned_cols=28 Identities=25% Similarity=0.757 Sum_probs=23.7
Q ss_pred ccccccccccccccCCCCCCCccCCCCCC
Q psy15047 97 YRTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
++...|..|. .+.|.+|..|.|.|....
T Consensus 150 ~rea~C~~~e-~~~C~rG~~CnFmH~k~~ 177 (260)
T KOG2202|consen 150 FREAICGQFE-RTECSRGGACNFMHVKRL 177 (260)
T ss_pred hhhhhhcccc-cccCCCCCcCcchhhhhh
Confidence 4667899998 669999999999998753
No 30
>KOG1813|consensus
Probab=91.84 E-value=0.052 Score=46.62 Aligned_cols=31 Identities=32% Similarity=0.852 Sum_probs=27.7
Q ss_pred CCccccccccccCCCCCCCCCCccccCCccc
Q psy15047 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHEL 88 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~el 88 (165)
-|...+|+-|..+|.|-||+.|.|.|+....
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 4677899999889999999999999998764
No 31
>KOG4791|consensus
Probab=91.62 E-value=0.13 Score=47.04 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCC
Q psy15047 37 KPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQR 116 (165)
Q Consensus 37 ~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~ 116 (165)
-..|+++..|.|.|.-.. ..-...|++|+..-.|+. -|.|-|+.-.+. ....+|-++.....|-. .+
T Consensus 11 ys~cKk~d~c~~rh~E~a---l~n~t~C~~w~~~~~C~k--~C~YRHSe~~~k-------r~e~~CYwe~~p~gC~k-~~ 77 (667)
T KOG4791|consen 11 YSTCKKGDSCPFRHCEAA---LGNETVCTLWQEGRCCRK--VCRYRHSEIDKK-------RSEIPCYWENQPTGCQK-LN 77 (667)
T ss_pred hhhhhccCcCcchhhHHH---hcCcchhhhhhhcCcccc--cccchhhHHhhh-------cCcccceeecCCCccCC-Cc
Confidence 356888888877665432 233467999986667776 999999874332 24568988774344865 89
Q ss_pred CccCCCCCCCC
Q psy15047 117 CYFIHEEKSVS 127 (165)
Q Consensus 117 C~F~H~~~~~~ 127 (165)
|-|.|..++|.
T Consensus 78 CgfRH~~pPLk 88 (667)
T KOG4791|consen 78 CGFRHNRPPLK 88 (667)
T ss_pred cccccCCCchh
Confidence 99999776553
No 32
>KOG1039|consensus
Probab=91.07 E-value=0.08 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.908 Sum_probs=22.7
Q ss_pred ccccccccCCCCCCCCCCccccCCc
Q psy15047 62 ELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 62 ~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
.+|++|+ .|.|+||+.|+|.|...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 8999998 89999999999999887
No 33
>KOG1039|consensus
Probab=90.33 E-value=0.14 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.820 Sum_probs=23.1
Q ss_pred cccccccccccCCCCCCCccCCCCCC
Q psy15047 100 KLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 100 ~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
.+|++|+ .|.|+||..|+|.|....
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCch
Confidence 6999988 899999999999999884
No 34
>KOG3702|consensus
Probab=89.50 E-value=0.53 Score=44.40 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCCCCCCcCccCC-----ccccccccccCCCCCCCCC-----CccccCCccccc--ccCC---C-Ccccc
Q psy15047 37 KPTDTWNANGRYSHFYHSRENLF-----KTELCRLHDETGVCKFGTG-----CKFAHGAHELRV--IPRH---P-RYRTK 100 (165)
Q Consensus 37 ~~~c~~~~~~~~~h~~~~~~~~~-----KT~lC~~y~~~G~C~~Gd~-----C~FaH~~~elr~--~~~~---~-~~kt~ 100 (165)
-+.|. ++.|.|.|.......+. -...|-+- .-.|.+|.. |.|.|+..-... ...+ + ...+.
T Consensus 550 ~~~Ct-~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks--~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~ 626 (681)
T KOG3702|consen 550 GPACT-SAECEFAHPTAAENAKSLPNKKFASKCLKS--HPGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRG 626 (681)
T ss_pred CCcCC-chhhhhcCCcchhhhhccccccccccceec--ccccccccccccccCcccccCCCCCCccccCCCCCCCCCccc
Confidence 35565 67778888776522211 11223333 245777664 678888755311 1111 1 23456
Q ss_pred ccccccccccCCCCCCCccCCCCCCC
Q psy15047 101 LCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 101 ~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
+|+|+ |.|+. .-|+|.|+..-.
T Consensus 627 ~CrY~---pnCrn-m~C~F~HPk~cR 648 (681)
T KOG3702|consen 627 LCRYR---PNCRN-MQCKFYHPKTCR 648 (681)
T ss_pred cceec---cCcCC-ccccccCCcccc
Confidence 78863 56765 668888887644
No 35
>KOG1813|consensus
Probab=88.97 E-value=0.12 Score=44.47 Aligned_cols=29 Identities=31% Similarity=1.068 Sum_probs=25.3
Q ss_pred cccccccccccccCCCCCCCccCCCCCCC
Q psy15047 98 RTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 98 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
-..+|+.|..+|+|-||+.|.|.|...+.
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 34579999999999999999999997744
No 36
>KOG4791|consensus
Probab=88.88 E-value=0.12 Score=47.34 Aligned_cols=55 Identities=25% Similarity=0.527 Sum_probs=41.4
Q ss_pred ccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 62 ELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 62 ~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
.-|.||+ ...|++++.|.|.|....+.. ...|.+|+..-.|+. .|.|.|..=.+.
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~k--~C~YRHSe~~~k 58 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCRK--VCRYRHSEIDKK 58 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCcccc--cccchhhHHhhh
Confidence 3477776 678999999999998865432 347999996655664 899999865543
No 37
>KOG1763|consensus
Probab=88.08 E-value=0.11 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.605 Sum_probs=28.1
Q ss_pred CccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy15047 96 RYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR 129 (165)
Q Consensus 96 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~ 129 (165)
..++.+|-+|. .|.|.-|..|.|+|+....+..
T Consensus 89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~ 121 (343)
T KOG1763|consen 89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKK 121 (343)
T ss_pred CchHHHHHHHh-ccCCCCCCcccccchHHHhhhc
Confidence 35788999997 8999999999999998866544
No 38
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.97 E-value=0.79 Score=24.81 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=8.7
Q ss_pred ccccccccccCCCCCCCccCC
Q psy15047 101 LCQSYHQDGFCPYGQRCYFIH 121 (165)
Q Consensus 101 ~C~~f~~~G~C~~G~~C~F~H 121 (165)
+|++-.+.|.|.. ..|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 3444443335532 3455544
No 39
>KOG3702|consensus
Probab=81.87 E-value=3.2 Score=39.32 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCCC-----CCCCCCCCcCccCCccccccccc--cCCCCCCCCC-----CccccCCcccccccCCCCcccc
Q psy15047 33 RYSSKPTDTWNAN-----GRYSHFYHSRENLFKTELCRLHD--ETGVCKFGTG-----CKFAHGAHELRVIPRHPRYRTK 100 (165)
Q Consensus 33 ~~~~~~~c~~~~~-----~~~~h~~~~~~~~~KT~lC~~y~--~~G~C~~Gd~-----C~FaH~~~elr~~~~~~~~kt~ 100 (165)
+..+-+-|.++.. |.++|.....+..+|+..|.+=+ ..+.|+|+.+ |.|.|..
T Consensus 581 ~~ks~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~pnCrnm~C~F~HPk--------------- 645 (681)
T KOG3702|consen 581 CLKSHPGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYRPNCRNMQCKFYHPK--------------- 645 (681)
T ss_pred ceecccccccccccccccCcccccCCCCCCccccCCCCCCCCCccccceeccCcCCccccccCCc---------------
Confidence 3456666777655 45666665433335665555541 1356777665 5677754
Q ss_pred ccccccccccCCCCCCCccCCCCC
Q psy15047 101 LCQSYHQDGFCPYGQRCYFIHEEK 124 (165)
Q Consensus 101 ~C~~f~~~G~C~~G~~C~F~H~~~ 124 (165)
.|++ ..+|+....|.|.|...
T Consensus 646 ~cRf---~~~c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 646 TCRF---NTNCPNNPSCTFYHERP 666 (681)
T ss_pred cccc---cccCCCCcccccccCCc
Confidence 5663 45788878899999865
No 40
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=77.92 E-value=0.46 Score=39.95 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=28.8
Q ss_pred CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy15047 96 RYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRG 130 (165)
Q Consensus 96 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~ 130 (165)
..++.+|-.|. .+.|..|..|.|+|+..+.+...
T Consensus 82 dpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~e 115 (299)
T COG5252 82 DPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTE 115 (299)
T ss_pred CchhHHHHHhc-cCccccCchhhhhcchHHHhhhc
Confidence 35788999998 89999999999999987776544
No 41
>KOG2202|consensus
Probab=66.62 E-value=3.4 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=25.5
Q ss_pred CccCCccccccccccCCCCCCCCCCccccCC
Q psy15047 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGA 85 (165)
Q Consensus 55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~ 85 (165)
....++...|..|. .+.|.+|..|.|.|-.
T Consensus 146 pvT~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 146 PVTDFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred CcCchhhhhhcccc-cccCCCCCcCcchhhh
Confidence 34567889999997 5599999999999976
No 42
>KOG0153|consensus
Probab=51.69 E-value=6.8 Score=34.66 Aligned_cols=26 Identities=27% Similarity=0.745 Sum_probs=22.5
Q ss_pred ccccccccccCCCCCCCCCCccccCCc
Q psy15047 60 KTELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 60 KT~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
.--+|.+|. .|.|++|+.|.|.|...
T Consensus 160 ~p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 160 RPHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred CCcccccee-eccccccccccccccCC
Confidence 347899997 78999999999999765
No 43
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=29.65 E-value=19 Score=32.04 Aligned_cols=27 Identities=37% Similarity=0.877 Sum_probs=22.6
Q ss_pred ccccccccccccCCCCCCCccCCCCCCC
Q psy15047 99 TKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 99 t~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
|+.|..|++.-.|+++ .|.|+|.+.+.
T Consensus 202 TKYCtsYLRn~~CpNp-~CMyLHEpg~e 228 (480)
T COG5175 202 TKYCTSYLRNAVCPNP-DCMYLHEPGPE 228 (480)
T ss_pred hHHHHHHHcCCCCCCC-CeeeecCCCcc
Confidence 5789999988899985 59999988754
No 44
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=27.50 E-value=30 Score=23.79 Aligned_cols=31 Identities=39% Similarity=0.948 Sum_probs=12.8
Q ss_pred CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCcc
Q psy15047 71 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119 (165)
Q Consensus 71 G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F 119 (165)
-.|.-|+.|..-|+. ...++|. |+.|..|.|
T Consensus 37 P~Cd~GE~CAvrkG~-----------RIGklCd-------C~rG~~CN~ 67 (73)
T PF06373_consen 37 PSCDVGEQCAVRKGP-----------RIGKLCD-------CPRGTSCNF 67 (73)
T ss_dssp -B--SSS-SEEE-SS-----------SEEE--B---------TT--B-T
T ss_pred CCCCCCchhhhcccc-----------ccccccC-------CCCCCchhh
Confidence 468889999887775 2344554 778877765
No 45
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=27.22 E-value=34 Score=18.91 Aligned_cols=15 Identities=33% Similarity=1.130 Sum_probs=5.9
Q ss_pred cccccccCCCCCCCCCCc
Q psy15047 63 LCRLHDETGVCKFGTGCK 80 (165)
Q Consensus 63 lC~~y~~~G~C~~Gd~C~ 80 (165)
+|+++ |.|..|..|.
T Consensus 8 mc~~~---~gC~WGQ~~~ 22 (27)
T PF08098_consen 8 MCKYT---GGCPWGQNCY 22 (27)
T ss_dssp ---TT---TT-SSS-SS-
T ss_pred cceee---cCCccccccc
Confidence 45555 4488887764
No 46
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=25.14 E-value=21 Score=19.76 Aligned_cols=9 Identities=56% Similarity=1.601 Sum_probs=5.3
Q ss_pred cCCCCCCCc
Q psy15047 110 FCPYGQRCY 118 (165)
Q Consensus 110 ~C~~G~~C~ 118 (165)
.|+||..|-
T Consensus 2 ~C~YG~~CY 10 (26)
T PF10283_consen 2 PCKYGAKCY 10 (26)
T ss_dssp E-TTGGG-S
T ss_pred CCCcchhhh
Confidence 488888885
No 47
>KOG0153|consensus
Probab=23.03 E-value=43 Score=29.77 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=22.0
Q ss_pred ccccccccccccCCCCCCCccCCCCC
Q psy15047 99 TKLCQSYHQDGFCPYGQRCYFIHEEK 124 (165)
Q Consensus 99 t~~C~~f~~~G~C~~G~~C~F~H~~~ 124 (165)
..+|.+|. .|.|+.|..|.|.|...
T Consensus 161 p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred Ccccccee-eccccccccccccccCC
Confidence 35799887 78999999999999887
No 48
>KOG2135|consensus
Probab=21.74 E-value=81 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.5
Q ss_pred CccccccccccCCCCCCCCCCccccCCcccc
Q psy15047 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELR 89 (165)
Q Consensus 59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr 89 (165)
+....|++|...|.|..|+.|.+.|+...+.
T Consensus 210 ~s~~r~k~fee~g~~~r~el~p~~hg~~~vv 240 (526)
T KOG2135|consen 210 NSENRRKFFEEFGVLERGELCPTHHGCVPVV 240 (526)
T ss_pred ccHHhhhhhHhhceeeeccccccccccceeE
Confidence 4457899999999999999999999987643
Done!