Query psy15047
Match_columns 165
No_of_seqs 183 out of 1183
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:04:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.8 5.4E-21 1.9E-25 130.8 3.8 71 55-125 6-76 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.5 1E-14 3.5E-19 104.8 4.9 61 47-125 2-62 (98)
3 2d9n_A Cleavage and polyadenyl 99.5 4.4E-14 1.5E-18 97.1 4.7 64 56-130 5-68 (77)
4 2rhk_C Cleavage and polyadenyl 99.4 1.6E-13 5.4E-18 93.4 2.7 62 55-127 10-71 (72)
5 3d2q_A Muscleblind-like protei 99.2 1.7E-12 5.9E-17 87.6 1.5 65 58-127 3-68 (70)
6 1m9o_A Tristetraproline; Cys3H 99.1 1.6E-11 5.5E-16 83.4 2.3 54 34-87 18-76 (77)
7 2e5s_A Otthump00000018578; ZF- 99.1 9.7E-12 3.3E-16 89.2 -0.6 66 57-127 16-82 (98)
8 3d2n_A Muscleblind-like protei 98.9 3E-10 1E-14 79.2 2.2 64 57-127 5-69 (83)
9 2d9n_A Cleavage and polyadenyl 98.7 8.7E-09 3E-13 70.4 4.6 56 37-106 18-73 (77)
10 2rpp_A Muscleblind-like protei 98.7 9.7E-09 3.3E-13 72.4 4.3 63 57-126 13-76 (89)
11 2d9m_A Zinc finger CCCH-type d 98.7 3.5E-09 1.2E-13 71.3 0.6 46 57-103 16-62 (69)
12 2cqe_A KIAA1064 protein; CCCH 98.6 4.4E-08 1.5E-12 70.0 4.4 45 34-87 18-62 (98)
13 3d2q_A Muscleblind-like protei 98.3 4.9E-07 1.7E-11 60.6 3.4 52 36-89 13-68 (70)
14 2d9m_A Zinc finger CCCH-type d 98.2 1.4E-07 4.6E-12 63.5 -0.9 33 95-128 16-48 (69)
15 2rhk_C Cleavage and polyadenyl 98.1 7.3E-07 2.5E-11 60.2 1.9 47 36-87 23-69 (72)
16 2e5s_A Otthump00000018578; ZF- 97.7 8.1E-06 2.8E-10 58.2 0.8 51 38-90 29-83 (98)
17 2fc6_A Nuclear, target of EGR1 97.3 6.1E-05 2.1E-09 47.2 0.9 29 97-125 18-46 (50)
18 3u9g_A Zinc finger CCCH-type a 97.1 0.00064 2.2E-08 55.1 5.5 46 60-125 150-199 (229)
19 3d2n_A Muscleblind-like protei 97.1 0.00032 1.1E-08 48.5 2.9 51 38-90 18-70 (83)
20 2fc6_A Nuclear, target of EGR1 96.7 0.00036 1.2E-08 43.7 0.8 29 58-86 17-45 (50)
21 3u9g_A Zinc finger CCCH-type a 96.7 0.00082 2.8E-08 54.4 3.0 62 62-124 90-179 (229)
22 2rpp_A Muscleblind-like protei 96.5 0.0018 6E-08 45.3 3.2 50 38-89 26-77 (89)
23 2lhn_A Nuclear polyadenylated 94.8 0.0015 5.3E-08 44.8 0.0 45 61-126 31-75 (80)
24 2lhn_A Nuclear polyadenylated 93.5 0.0065 2.2E-07 41.7 0.0 42 61-122 9-50 (80)
25 3u1l_A PRE-mRNA-splicing facto 92.1 0.033 1.1E-06 45.1 0.6 25 61-86 70-94 (240)
26 3u1l_A PRE-mRNA-splicing facto 89.8 0.07 2.4E-06 43.2 0.4 26 99-125 70-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 79.4 0.43 1.5E-05 38.4 0.3 25 98-125 191-215 (223)
28 3v33_A Ribonuclease ZC3H12A; r 71.1 1.1 3.7E-05 36.0 0.7 48 36-86 164-214 (223)
29 2kqb_A Aprataxin and PNK-like 43.8 11 0.00037 26.0 1.7 9 110-118 58-66 (89)
30 1hy9_A Cocaine and amphetamine 37.9 20 0.0007 21.0 2.1 32 71-120 5-36 (41)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.81 E-value=5.4e-21 Score=130.84 Aligned_cols=71 Identities=49% Similarity=1.091 Sum_probs=34.7
Q ss_pred CccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
.+.++||+||++|+..|.|++|++|+|+|+..+++....++.+++.+|++|...|.|++|.+|+|+|+..+
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 35689999999998789999999999999999999877777899999999988999999999999998764
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.51 E-value=1e-14 Score=104.75 Aligned_cols=61 Identities=33% Similarity=0.625 Sum_probs=52.0
Q ss_pred CCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047 47 RYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 47 ~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
.++|.+ ...+|+++|++|+ .|.|++|++|+|+|+ +.+|++|+..|.|++|.+|+|+|....
T Consensus 2 ~~sH~~---~~~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 2 SSGSSG---ELPKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCCCCC---CCSCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CccccC---CCCCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 345554 3458999999997 899999999999998 358999987999999999999999653
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=97.07 Aligned_cols=64 Identities=27% Similarity=0.523 Sum_probs=53.8
Q ss_pred ccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy15047 56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRG 130 (165)
Q Consensus 56 ~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~ 130 (165)
...+|+++|++|+ .|.|++|+.|.|+|+... .++.+|++|+..|.|. |++|+|+|...+.....
T Consensus 5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~---------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~ 68 (77)
T 2d9n_A 5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDM---------TKMPECYFYSKFGECS-NKECPFLHIDPESKIKD 68 (77)
T ss_dssp CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCT---------TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSS
T ss_pred CCCCcceeCHhHc-cCcCCCCCCCCCcccccc---------CcCCCCcccCCCCccC-CCCeeccCCCccccCCC
Confidence 3568999999998 599999999999999854 2456899999669999 89999999987665443
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=93.39 Aligned_cols=62 Identities=27% Similarity=0.520 Sum_probs=51.4
Q ss_pred CccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
-....++++|++|+ .|.|.+|+.|.|+|+... .++.+|++|+..|.|.+ ++|+|.|..++.+
T Consensus 10 ~~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~---------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 10 HMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDM---------TKMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp SSSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCT---------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred cCCCCcCeeCHHHh-cCCCCCCCCCCCcccccc---------ccCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 34568899999998 599999999999999743 24668999996699999 9999999987653
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.23 E-value=1.7e-12 Score=87.61 Aligned_cols=65 Identities=26% Similarity=0.583 Sum_probs=52.7
Q ss_pred CCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 58 LFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
..|.++|++|+ .|.|.+|+ .|+|+|+..++... ....++.+|.+|+ .|.|..| .|+|+|....|+
T Consensus 3 ~~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~--~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 3 TDRLEVCREYQ-RGNCNRGENDCRFAHPADSTMID--TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp -CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB--TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred cccchhCHHHh-cCCCCCCCCCCCCccCccccccc--ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 45778999997 89999999 59999998765332 1235788999998 6999999 999999987664
No 6
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.12 E-value=1.6e-11 Score=83.37 Aligned_cols=54 Identities=30% Similarity=0.589 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCcC-----ccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047 34 YSSKPTDTWNANGRYSHFYHSR-----ENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87 (165)
Q Consensus 34 ~~~~~~c~~~~~~~~~h~~~~~-----~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e 87 (165)
|...|.|++|.+|+|+|...+. ...+||.+|++|...|.|++|++|+|+|+..|
T Consensus 18 f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 18 YSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp GGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred hhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 5578999999999999998642 34689999998877999999999999999865
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.7e-12 Score=89.24 Aligned_cols=66 Identities=27% Similarity=0.575 Sum_probs=54.2
Q ss_pred cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
...|.++|++|+ .|.|.+|+ .|+|+|+..++... ....+..+|.+|+ .|.|..| .|+|.|....+.
T Consensus 16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--TSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--TTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHH
T ss_pred ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--ccCCccccchhhc-cCCCCCC-CcCccCChHHHH
Confidence 457889999998 69999999 79999998765432 1235678999998 7999999 999999987653
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.92 E-value=3e-10 Score=79.16 Aligned_cols=64 Identities=27% Similarity=0.543 Sum_probs=51.9
Q ss_pred cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047 57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 127 (165)
.+.+..+|+.|+ .|.|.+|+ .|+|+|....+... ..+..+|.+|+ .|.|..+ .|+|.|....+.
T Consensus 5 ~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~~----~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 5 KWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp GGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCEE----TTEEECCHHHH-TTCCCCS-SCSSCCCCHHHH
T ss_pred ccccchhcHHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeehhHhh-hccccCC-CcceeCChHHHH
Confidence 467889999998 59999997 99999998654321 23567899998 7999998 899999987553
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=8.7e-09 Score=70.41 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCcccccccccc
Q psy15047 37 KPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYH 106 (165)
Q Consensus 37 ~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~ 106 (165)
.|.|..|.+|.|+|.... .++.+|++|++.|.|. |+.|.|+|...+ .++.+|++|.
T Consensus 18 ~G~C~~G~~C~fsH~~~~----~~~~~C~~f~~~G~C~-~~~C~f~H~~~~---------~~~~~C~~f~ 73 (77)
T 2d9n_A 18 RGLCKKGDQCEFLHEYDM----TKMPECYFYSKFGECS-NKECPFLHIDPE---------SKIKDCPWSG 73 (77)
T ss_dssp TTCCSCTTSSSSBCSCCT----TTSCBCHHHHHTCCCC-CSSCSSBCCCTT---------SSCSSSSCCT
T ss_pred cCcCCCCCCCCCcccccc----CcCCCCcccCCCCccC-CCCeeccCCCcc---------ccCCCCcccc
Confidence 399999999999998753 3567999999669999 999999999743 4577999997
No 10
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.72 E-value=9.7e-09 Score=72.40 Aligned_cols=63 Identities=27% Similarity=0.568 Sum_probs=51.0
Q ss_pred cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047 57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
.+.+..+|+.|+ .|.|..|+ .|+|+|....+... ..+..+|.+|+ .|.|..+ .|+|.|....+
T Consensus 13 ~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 13 KWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp SSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred CcchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeeehhhh-hCcCCCC-CcceecCHHHH
Confidence 356788999998 69999998 99999998653221 23567899998 7999997 89999998754
No 11
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.5e-09 Score=71.26 Aligned_cols=46 Identities=30% Similarity=0.472 Sum_probs=34.6
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCcccccccC-CCCccccccc
Q psy15047 57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR-HPRYRTKLCQ 103 (165)
Q Consensus 57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~-~~~~kt~~C~ 103 (165)
...|++||+.|+ .|.|+||++|.|||+.+||+.... ....++++++
T Consensus 16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~ 62 (69)
T 2d9m_A 16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNK 62 (69)
T ss_dssp CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHH
Confidence 345779999995 889999999999999999987431 1223455555
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.58 E-value=4.4e-08 Score=69.99 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=39.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047 34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87 (165)
Q Consensus 34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e 87 (165)
|...|.|.+|.+|.|+|. +.+|++|+..|.|++|++|+|+|....
T Consensus 18 ~f~~G~C~~G~~C~f~H~---------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 18 FYITGFCARAENCPYMHG---------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp TTTTTCCSCSTTCSSBSS---------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred ccccCcCCCCCCCCCCCC---------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 335799999999999998 688999976899999999999998653
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.27 E-value=4.9e-07 Score=60.56 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCCCCCCCCC-CCCCCCCCc---CccCCccccccccccCCCCCCCCCCccccCCcccc
Q psy15047 36 SKPTDTWNAN-GRYSHFYHS---RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR 89 (165)
Q Consensus 36 ~~~~c~~~~~-~~~~h~~~~---~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr 89 (165)
..|.|.-+.+ |.|+|.... .....++.+|.+|+ .|.|.+| .|.|+|...+|+
T Consensus 13 ~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 13 QRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp HTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred hcCCCCCCCCCCCCccCcccccccccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 4599999994 999998753 44578899999998 6999999 999999987765
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-07 Score=63.47 Aligned_cols=33 Identities=30% Similarity=0.751 Sum_probs=28.7
Q ss_pred CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy15047 95 PRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS 128 (165)
Q Consensus 95 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~ 128 (165)
|..++.+|+.|. .|.|+||++|.|||+..+|+.
T Consensus 16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence 345679999994 899999999999999999875
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.13 E-value=7.3e-07 Score=60.20 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047 36 SKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87 (165)
Q Consensus 36 ~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e 87 (165)
-.|.|..|.+|.|+|... ..++.+|++|++.|.|.+ +.|.|.|...+
T Consensus 23 l~G~C~~G~~C~fsH~~~----~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 23 LRGLCKKGDQCEFLHEYD----MTKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp HTTCCCCGGGSSSBCSCC----TTSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred hcCCCCCCCCCCCccccc----cccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 339999999999999874 346789999995599999 99999998754
No 16
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=8.1e-06 Score=58.20 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=43.2
Q ss_pred CCCCCCC-CCCCCCCCCc---CccCCccccccccccCCCCCCCCCCccccCCccccc
Q psy15047 38 PTDTWNA-NGRYSHFYHS---RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRV 90 (165)
Q Consensus 38 ~~c~~~~-~~~~~h~~~~---~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~ 90 (165)
|.|.-+. .|+|+|.... .....++.+|.+|+ .|.|.+| .|+|.|...+++.
T Consensus 29 G~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 29 GNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp TCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHHH
T ss_pred CcCCCCCCCCCCcCCchhccccccCCccccchhhc-cCCCCCC-CcCccCChHHHHH
Confidence 9999998 7999999753 23468899999998 7999999 9999999877643
No 17
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.27 E-value=6.1e-05 Score=47.23 Aligned_cols=29 Identities=28% Similarity=0.749 Sum_probs=23.7
Q ss_pred ccccccccccccccCCCCCCCccCCCCCC
Q psy15047 97 YRTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
..+.+|..|.+.|+|++|..|.+.|+.+-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46778888888888888888888888653
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.11 E-value=0.00064 Score=55.07 Aligned_cols=46 Identities=24% Similarity=0.611 Sum_probs=39.7
Q ss_pred ccccccccccC----CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047 60 KTELCRLHDET----GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 60 KT~lC~~y~~~----G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
=.++|.+| +. |.|.+++.|...| +|++|. .|.|+| ..|+-.|+..+
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~~Fl-~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICEHFT-RGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccchhh-cCCcCC-CCccCccCccC
Confidence 36899999 53 6899999999877 899998 899999 89999999754
No 19
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=48.46 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=41.3
Q ss_pred CCCCCCC-CCCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCccccc
Q psy15047 38 PTDTWNA-NGRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRV 90 (165)
Q Consensus 38 ~~c~~~~-~~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~ 90 (165)
|.|.-+. .|+|+|.... ....-+..+|.+|+ .|.|..+ .|+|.|....+..
T Consensus 18 G~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 18 GTCSRPDTECKFAHPSKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp TCCCSCTTTCSSBCCCTTCCEETTEEECCHHHH-TTCCCCS-SCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCcCCCccccccCCceeehhHhh-hccccCC-CcceeCChHHHHH
Confidence 8999996 8999999742 22345789999998 7999998 9999999876543
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.73 E-value=0.00036 Score=43.69 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=26.8
Q ss_pred CCccccccccccCCCCCCCCCCccccCCc
Q psy15047 58 LFKTELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
..++.+|..|...|.|++|.+|.+.|+++
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 47899999999899999999999999985
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.71 E-value=0.00082 Score=54.44 Aligned_cols=62 Identities=26% Similarity=0.539 Sum_probs=44.5
Q ss_pred ccccccccCCCCC----CCCCCccccCCcccccc---------------------cCCCCccccccccccc---cccCCC
Q psy15047 62 ELCRLHDETGVCK----FGTGCKFAHGAHELRVI---------------------PRHPRYRTKLCQSYHQ---DGFCPY 113 (165)
Q Consensus 62 ~lC~~y~~~G~C~----~Gd~C~FaH~~~elr~~---------------------~~~~~~kt~~C~~f~~---~G~C~~ 113 (165)
=+|++|+ -|.|+ .+..|+|.|+....... ...|..-..+|.+|.. .|.|.+
T Consensus 90 HLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~~g~C~~ 168 (229)
T 3u9g_A 90 HLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGRKQTCGQ 168 (229)
T ss_dssp CCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSSCCSCSS
T ss_pred eechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHhCCCCCCCcCCC
Confidence 3799998 79993 45789999988653211 0223445679999932 379999
Q ss_pred CCCCccCCCCC
Q psy15047 114 GQRCYFIHEEK 124 (165)
Q Consensus 114 G~~C~F~H~~~ 124 (165)
+..|...|.=.
T Consensus 169 ~~~C~kLHIC~ 179 (229)
T 3u9g_A 169 PQPCERLHICE 179 (229)
T ss_dssp SSCCCSBCSCH
T ss_pred CCCCcceeccc
Confidence 99999998754
No 22
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.50 E-value=0.0018 Score=45.28 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=40.7
Q ss_pred CCCCCCC-CCCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCcccc
Q psy15047 38 PTDTWNA-NGRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR 89 (165)
Q Consensus 38 ~~c~~~~-~~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr 89 (165)
|.|.-+. .|+|+|.... .-..-+..+|..|+ .|.|..+ .|+|.|....+.
T Consensus 26 G~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl~ 77 (89)
T 2rpp_A 26 GTCSRSDEECKFAHPPKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPTHLK 77 (89)
T ss_dssp TCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHH-HTCCCCT-TCCSBCCCHHHH
T ss_pred CCCCCCCCCCCCcCCCccccccCCceeeehhhh-hCcCCCC-CcceecCHHHHH
Confidence 8899887 8999998753 22345789999998 8999997 999999987654
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.79 E-value=0.0015 Score=44.80 Aligned_cols=45 Identities=27% Similarity=0.486 Sum_probs=32.6
Q ss_pred cccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047 61 TELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126 (165)
Q Consensus 61 T~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 126 (165)
..+|+++. .|.. ..|.|+|.. .+.|+++. .|.. ..|.|.|....+
T Consensus 31 ~~~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp~g~~ 75 (80)
T 2lhn_A 31 HIMCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHPPGRV 75 (80)
Confidence 35788874 5887 679999963 24788654 7888 789999975543
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.53 E-value=0.0065 Score=41.65 Aligned_cols=42 Identities=26% Similarity=0.636 Sum_probs=32.8
Q ss_pred cccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCC
Q psy15047 61 TELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHE 122 (165)
Q Consensus 61 T~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~ 122 (165)
.++|+||. .|.. +.|.|.|... ..+|+++ ..|.. ..|.|.|+
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~------------~~~Cr~g---~~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS------------HIMCREG---ANCTR-IDCLFGHP 50 (80)
Confidence 46899995 4999 9999999652 2378875 37887 77999997
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.12 E-value=0.033 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.688 Sum_probs=22.0
Q ss_pred cccccccccCCCCCCCCCCccccCCc
Q psy15047 61 TELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 61 T~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
.-+|.||. .|.|++|+.|.|.|...
T Consensus 70 ~~~C~ffa-kG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFA-KGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred CeEcCccc-cCCCCCCCCCCccCCCC
Confidence 45999998 69999999999999764
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.80 E-value=0.07 Score=43.17 Aligned_cols=26 Identities=23% Similarity=0.709 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCCCCccCCCCCC
Q psy15047 99 TKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 99 t~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
..+|.+|. .|.|+.|..|.|.|..+.
T Consensus 70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFA-KGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred CeEcCccc-cCCCCCCCCCCccCCCCC
Confidence 35899997 699999999999998664
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=79.42 E-value=0.43 Score=38.36 Aligned_cols=25 Identities=36% Similarity=0.878 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCccCCCCCC
Q psy15047 98 RTKLCQSYHQDGFCPYGQRCYFIHEEKS 125 (165)
Q Consensus 98 kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 125 (165)
+..+|++ ...|.||.+|+|.|++..
T Consensus 191 ~~~~~~~---~~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPY---GRKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCC---CcccccCCcceecCCccC
Confidence 3456774 346888888888877653
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=71.10 E-value=1.1 Score=35.97 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC-CCCCCcCc--cCCccccccccccCCCCCCCCCCccccCCc
Q psy15047 36 SKPTDTWNANGRY-SHFYHSRE--NLFKTELCRLHDETGVCKFGTGCKFAHGAH 86 (165)
Q Consensus 36 ~~~~c~~~~~~~~-~h~~~~~~--~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~ 86 (165)
-++-.|.|-+|-. ..++..++ .-.+..+|+|- ..|.||.+|+|.|.+.
T Consensus 164 mppdDplgR~Gp~l~~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 164 MPPDDPLGRHGPSLDNFLRKKPLTLEHRKQPCPYG---RKCTYGIKCRFFHPER 214 (223)
T ss_dssp ECCSSTTCTTSCCHHHHTBSCC--------------------------------
T ss_pred eCCCCcccCCCCCHHHHhccCCCCcccCCCCCCCC---cccccCCcceecCCcc
Confidence 3677788877632 22222221 12367889986 3699999999999863
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=43.75 E-value=11 Score=26.02 Aligned_cols=9 Identities=67% Similarity=1.792 Sum_probs=0.0
Q ss_pred cCCCCCCCc
Q psy15047 110 FCPYGQRCY 118 (165)
Q Consensus 110 ~C~~G~~C~ 118 (165)
.|+||..|-
T Consensus 58 ~C~YG~~CY 66 (89)
T 2kqb_A 58 ECPYGPSCY 66 (89)
T ss_dssp ---------
T ss_pred CCCCchhhh
Confidence 466666663
No 30
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=37.91 E-value=20 Score=21.02 Aligned_cols=32 Identities=38% Similarity=0.851 Sum_probs=21.3
Q ss_pred CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccC
Q psy15047 71 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFI 120 (165)
Q Consensus 71 G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~ 120 (165)
-.|.-|++|...++. ..-++|. |+.|..|.|.
T Consensus 5 P~Cd~GeqCAvRkG~-----------RigklC~-------C~rg~~Cn~f 36 (41)
T 1hy9_A 5 PMCDAGEQCAVRKGA-----------RIGKLCD-------CPRGTSCNSF 36 (41)
T ss_dssp CBCCSSSCSEEECSS-----------SEEECCB-------CCTTCCBCTT
T ss_pred CcCCccchhhhhccc-----------ccchhcC-------CCCCCcchhh
Confidence 358888888877664 2234553 8888888763
Done!