RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15047
(165 letters)
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function
prediction only].
Length = 351
Score = 60.1 bits (145), Expect = 3e-11
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 46 GRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSY 105
R S+ L+KTE+ R E C++ FAH + HP+Y+T+ + +
Sbjct: 101 PRGSNANK-PYGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVF 159
Query: 106 HQDGFCPYGQRCYFIH 121
G+ PY +RC FI
Sbjct: 160 INPGYVPYSKRCCFIS 175
Score = 48.5 bits (115), Expect = 3e-07
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPR--YRTKLCQSYHQDGFC 111
++ F+TE C +++G C +G C F HG + Y C++ + G
Sbjct: 267 KKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAF 326
Query: 112 PYGQRCYFIHEEK 124
P G ++K
Sbjct: 327 PSGGAVCKSFDKK 339
Score = 40.0 bits (93), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 47 RYSHFYHSRENLFKT--ELCRLHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYR 98
+ L+KT ELC G C + G C+FA HG +EL+ + +R
Sbjct: 214 LIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFR 273
Query: 99 TKLCQSYHQDGFCPYGQRCYFIH 121
T+ C ++ + G+CPYG RC F H
Sbjct: 274 TEPCINWEKSGYCPYGLRCCFKH 296
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
similar).
Length = 27
Score = 38.7 bits (91), Expect = 3e-05
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHG 84
+KTELCR TG CK+G CKFAHG
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAHG 26
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 97 YRTKLCQSYHQDGFCPYGQRCYFIH 121
Y+T+LC+ + + G C YG RC F H
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAH 25
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 30.3 bits (69), Expect = 0.035
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
+Y+T+LC+ + + G+CP G RC F H
Sbjct: 1 KYKTELCKFFKR-GYCPRGDRCKFAHPL 27
Score = 29.9 bits (68), Expect = 0.055
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAHG 84
+KTELC+ + G C G CKFAH
Sbjct: 2 YKTELCKFF-KRGYCPRGDRCKFAHP 26
>gnl|CDD|178317 PLN02715, PLN02715, lipid phosphate phosphatase.
Length = 327
Score = 31.6 bits (71), Expect = 0.17
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 97 YRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQDG 156
YR YH++G+ PY YF K+ RG V SS + +SL S+ +
Sbjct: 265 YRQFYPNPYHEEGWGPYA---YF----KAAQERGVPVASSQNGDALRAMSLQMDSTSLEN 317
Query: 157 QEEGFVTS 164
E G T+
Sbjct: 318 MESGTSTA 325
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 30.3 bits (68), Expect = 0.44
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 87 ELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
+L +I H Y + Q+Y G C YG+ FI K
Sbjct: 314 DLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGK 351
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 29.3 bits (65), Expect = 0.85
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 97 YRTKLCQSYHQDGFCPYGQRCYFIH 121
+ +C+ Y + G+C YG C F+H
Sbjct: 139 TQPDVCKDYKETGYCGYGDSCKFLH 163
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 59 FKTELCRLHDETGVCKFGTGCKFAH 83
+ ++C+ + ETG C +G CKF H
Sbjct: 139 TQPDVCKDYKETGYCGYGDSCKFLH 163
>gnl|CDD|184877 PRK14877, PRK14877, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 1062
Score = 27.4 bits (60), Expect = 5.3
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 58 LFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY---- 113
L K ++C + K G + E++ +P C +Y D C
Sbjct: 526 LAKDKICSYDASGKIMKDANGKDLCYNYEEIKSMP-------DACSTYKNDAACVLDKQT 578
Query: 114 --------GQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCS 151
G +++E+K RG V V S + + + CS
Sbjct: 579 CAEGWFDEGTNSCYMYEQKYTCDRGKDVVREVESSTNACVGMIPCS 624
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 26.9 bits (59), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 22 HWASLRPATEERYSSKPTDTWNANGR 47
HWA++R + Y TWNA+ R
Sbjct: 514 HWAAIRDGKIDLYQCVVPTTWNASPR 539
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 26.8 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 63 LCRLHDETGVCKFGTGCKFAHGAHELRVIPR 93
L RL + G+ FGT K+ + + P
Sbjct: 320 LWRLAAKLGITIFGTSAKYLDALEKAGIEPG 350
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 26.6 bits (58), Expect = 6.1
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 60 KTELCRLHDETGVCKFGTGCKFAHGAHELR 89
KT +C L C G CKFAHG E R
Sbjct: 84 KTVVCALFL-NKTCAKGDACKFAHGKEEAR 112
>gnl|CDD|218712 pfam05710, Coiled, Coiled coil. This region is found in a group of
Dictyostelium discoideum proteins. It is likely to form
a coiled-coil. Some of the proteins are regulated by
cyclic AMP and are expressed late in development.
Length = 90
Score = 25.6 bits (56), Expect = 6.6
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 124 KSVSSRGTSVTSSVSSRGSGKISLSSCSSDQDG 156
S S +S SS S GS I+ C G
Sbjct: 15 SSSKSSISSFGSSSLSMGSNSIACGGCGGGSPG 47
>gnl|CDD|235212 PRK04043, tolB, translocation protein TolB; Provisional.
Length = 419
Score = 26.5 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 121 HEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQ 154
+EK SS+G V S VS GS K+ L+ Q
Sbjct: 224 KKEKIASSQGMLVVSDVSKDGS-KLLLTMAPKGQ 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.426
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,826,856
Number of extensions: 633727
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 28
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)