RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15047
(165 letters)
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein;
NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 79.2 bits (195), Expect = 2e-20
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 113
+ + +KTELCR + E+G C++G C+FAHG ELR RHP+Y+T+LC + G CPY
Sbjct: 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPY 64
Query: 114 GQRCYFIHEE 123
G RC+FIH
Sbjct: 65 GSRCHFIHNP 74
Score = 40.3 bits (94), Expect = 1e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 91 IPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
+ RY+T+LC++Y + G C YG +C F H
Sbjct: 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGL 36
Score = 39.9 bits (93), Expect = 2e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 44 ANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87
A+G +R +KTELC G C +G+ C F H E
Sbjct: 33 AHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 46.2 bits (109), Expect = 2e-07
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 60 KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119
K ELC+ TG C C + HG C+ YH G C G C F
Sbjct: 12 KRELCK-FYITGFCARAENCPYMHGDFP--------------CKLYHTTGNCINGDDCMF 56
Query: 120 IHEEKSVSSR 129
H+ + +R
Sbjct: 57 SHDPLTEETR 66
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 36.8 bits (85), Expect = 2e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 48 YSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ 107
+ H +HS + KT +C+ H G+CK G C+F H + C Y +
Sbjct: 3 HHHHHHSHMSGEKTVVCK-HWLRGLCKKGDQCEFLHEYDM---------TKMSECYFYSK 52
Query: 108 DGFCPYGQRCYFIHEE 123
G C + C F+H +
Sbjct: 53 FGECS-NKECPFLHID 67
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 77
Score = 36.8 bits (85), Expect = 3e-04
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 60 KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119
KT +C+ H G+CK G C+F H + C Y + G C + C F
Sbjct: 9 KTVVCK-HWLRGLCKKGDQCEFLHEYDM---------TKMPECYFYSKFGEC-SNKECPF 57
Query: 120 IHEEKS 125
+H +
Sbjct: 58 LHIDPE 63
Score = 24.5 bits (53), Expect = 9.1
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 14/61 (22%)
Query: 47 RYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYH 106
+ H Y K C + + G C C F H P + K C
Sbjct: 28 EFLHEYDMT----KMPECYFYSKFGEC-SNKECPFLHI---------DPESKIKDCPWSG 73
Query: 107 Q 107
Sbjct: 74 P 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 7e-04
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 11 YPWDHNEKMDK-HWASLRPA-TEERYSSKPTDTWNANGRYSHFYHSRENLF---KTELCR 65
Y + M +P+ Y + +N N ++ + SR + + L
Sbjct: 91 YKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 66 LHDETGVCKFG-TGC 79
L V G G
Sbjct: 147 LRPAKNVLIDGVLGS 161
Score = 26.7 bits (58), Expect = 5.1
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 31/176 (17%)
Query: 6 YYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWN---------ANGRYSHFYHSRE 56
++H H ++ E + + E+ + D + + H S++
Sbjct: 2 HHHHHMDFETGE-HQYQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 57 NLFKT----ELCRLHDETGVCKF-GTGCKFAHG--AHELRVIPRHPRYRTKLCQSYHQDG 109
+ T E V KF + + ++ R P T++ D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DR 118
Query: 110 FCPYGQRC--YFIHEEKSVSSRGTSVTSSVSSR--------GSGKISL--SSCSSD 153
Q Y + + ++ ++ GSGK + C S
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Score = 26.0 bits (56), Expect = 8.2
Identities = 18/143 (12%), Positives = 32/143 (22%), Gaps = 34/143 (23%)
Query: 1 MDTEKYYHTHYPWDHNEKMDKHWASLRPA-TEERY--------SSK-PTDT----WNANG 46
+ T + ++ L PA + + S+ PT W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 47 RYS-----HFYHSR---ENLFKTELCRLHDETGVCKFGTGCKFAHGA--HELRVIPRHPR 96
+ + H E K + K + H ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPS----IYLELKVKLENEYALHR-SIV---DH 452
Query: 97 YRTKLCQSYHQDGFCPYGQRCYF 119
Y + D P YF
Sbjct: 453 YNIPKT--FDSDDLIPPYLDQYF 473
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative
splicing, metal- binding, nucleus, RNA-binding, zinc,
zinc-finger, metal binding; 1.50A {Homo sapiens} PDB:
3d2s_A
Length = 70
Score = 31.9 bits (72), Expect = 0.017
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 60 KTELCRLHDETGVCKFG-TGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
+ E+CR + G C G C+FAH A + +C Y + ++C
Sbjct: 5 RLEVCR-EYQRGNCNRGENDCRFAHPADSTMIDTN--DNTVTVCMDYIKGRCS--REKCK 59
Query: 119 FIHEEKSVSSR 129
+ H + ++
Sbjct: 60 YFHPPAHLQAK 70
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH
zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 69
Score = 31.4 bits (71), Expect = 0.026
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 62 ELCRLHDETGVCKFGTGCKFAHGAHELR 89
+C + G C G CKFAHG EL
Sbjct: 21 SICDRYMN-GTCPEGNSCKFAHGNAELH 47
Score = 27.2 bits (60), Expect = 0.74
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 93 RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
R P +C Y +G CP G C F H
Sbjct: 14 RFPTGYFSICDRY-MNGTCPEGNSCKFAHGN 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.15
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 2 DTEKYYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDT 41
D E++ +E+++K+ + R A + Y D
Sbjct: 119 DLEEWNQ-----RQSEQVEKNKINNRIADKAFYQQPDADI 153
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 29.8 bits (66), Expect = 0.35
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 96 RYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQD 155
+ C + G C G +C ++H G + G+ + D
Sbjct: 67 DGQLFFC-LFFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMG 125
Query: 156 GQEE 159
G
Sbjct: 126 GIGS 129
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III
dependent non-heme intradiol dioxygenase, oxidoredu;
HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A*
1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A*
3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A*
3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Length = 200
Score = 29.2 bits (65), Expect = 0.43
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 40 DTW--NANGRYSHFYHSRENLFKTELCRLHDETGVCKFGT 77
+ W +ANG Y Y+ + G T
Sbjct: 69 EVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHT 108
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 28.6 bits (63), Expect = 0.93
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 13 WDHNEKMDKHWASLRPATEERYSSKPTDTWNANGR 47
D ++ ++ A + Y KP + GR
Sbjct: 13 RDLPRSFEQKHLAVVDAFFQTYHVKPDFIARSPGR 47
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 27.2 bits (59), Expect = 1.3
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 60 KTELCRLHDETGVCKFG-TGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
K E+CR + G C G T C+FAH A + +C + G C ++C
Sbjct: 19 KLEVCREF-QRGNCARGETDCRFAHPADSTMIDTS--DNTVTVCM-DYIKGRC-MREKCK 73
Query: 119 FIHEEKSVSSRGTSVTSSVSSRG 141
+ H + ++ + +
Sbjct: 74 YFHPPAHLQAKIKAAQHQANQAA 96
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 27.6 bits (61), Expect = 1.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 109 GFCPYGQRCYFIHEEKSVS 127
G CP+ QR + I K V
Sbjct: 28 GNCPFCQRLFMILWLKGVK 46
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 27.6 bits (61), Expect = 1.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 109 GFCPYGQRCYFIHEEKSVS 127
G CP+ QR + + K V+
Sbjct: 22 GNCPFSQRLFMVLWLKGVT 40
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 27.1 bits (60), Expect = 3.1
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 10/124 (8%)
Query: 45 NGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQS 104
+R+N+F +E + ++ P
Sbjct: 736 EPLLLPEDDTRDNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMRNDVVPTLMP---AP 792
Query: 105 YHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSSR-------GSGKISLSSCSSDQDGQ 157
+++ + FI E + + S GS SLSS +S
Sbjct: 793 HYRPRPSNPDEIGNFIDENLDAADNDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSNSND 852
Query: 158 EEGF 161
E +
Sbjct: 853 EHDY 856
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel, nucleus,
transport, gated channel; 1.95A {Homo sapiens} PDB:
3kjy_A
Length = 250
Score = 26.9 bits (59), Expect = 3.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 109 GFCPYGQRCYFIHEEKSVS 127
G CP QR + + K V
Sbjct: 40 GHCPSCQRLFMVLLLKGVP 58
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein;
1.80A {Rattus norvegicus}
Length = 229
Score = 26.7 bits (58), Expect = 4.0
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 22/75 (29%)
Query: 51 FYHSRENLFKTELCRLHD---ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ 107
+ F E+C+ + C C+ H +C+ + +
Sbjct: 141 LLVQSDPFFLPEICKSYKGEGRKQTCGQPQPCERLH-----------------ICEHFTR 183
Query: 108 DGFCPYGQRCYFIHE 122
G C Y C H
Sbjct: 184 -GNCSYL-NCLRSHN 196
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA
racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA
racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis}
PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Length = 360
Score = 26.4 bits (59), Expect = 4.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 12 PWDHNEKMDK-HWASLRPATEERYSSKPTDTWNA 44
+ + D+ W LR E ++S D W A
Sbjct: 256 AAELPPQNDRARWPELRALLTEAFASHDRDHWGA 289
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 26.2 bits (58), Expect = 5.3
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 80 KFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS 127
+ V P + + FCP+ R E +
Sbjct: 230 AQCIENYRHLVPESAPMMGANGGHVLYSNLFCPFVDRARLASELRKFQ 277
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative
splicing, cytoplasm, metal-binding, nucleus,
RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Length = 89
Score = 25.2 bits (54), Expect = 5.3
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 71 GVCKFG-TGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
G C CKFAH +V R C G C + C ++H
Sbjct: 26 GTCSRSDEECKFAHPPKSCQVENG----RVIACF-DSLKGRCSR-ENCKYLH 71
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis}
Length = 359
Score = 26.0 bits (58), Expect = 7.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 12 PWDHNEKMDK-HWASLRPATEERYSSKPTDTWNA 44
D ++D + + ER++S+ D W
Sbjct: 258 AADVPTQLDVAGYPQMYDIFAERFASRTRDEWTR 291
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 25.8 bits (57), Expect = 7.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 6 YYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGR 47
++H H+ ++ + A R A E + ++P +A GR
Sbjct: 3 HHHHHHAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGR 44
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase
superfamily, CLIC4, NCC27, chloride ION channel, metal
transport; 1.80A {Homo sapiens} PDB: 2d2z_A
Length = 267
Score = 25.7 bits (56), Expect = 7.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 108 DGFCPYGQRCYFIHEEKSVS 127
G CP+ QR + I K V
Sbjct: 32 IGNCPFSQRLFMILWLKGVV 51
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
cytoplastic, hydrolase; 2.00A {Homo sapiens}
Length = 223
Score = 25.5 bits (55), Expect = 8.3
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 88 LRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
LR P +R + C C YG +C F H E+
Sbjct: 181 LRKKPLTLEHRKQPCPY---GRKCTYGIKCRFFHPER 214
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative
splicing, metal- binding, nucleus, RNA-binding, zinc,
zinc-finger, metal binding; 2.70A {Homo sapiens}
Length = 83
Score = 24.3 bits (52), Expect = 10.0
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 71 GVCKFG-TGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
G C T CKFAH + +V R C + C C ++H
Sbjct: 18 GTCSRPDTECKFAHPSKSCQVENG----RVIACFDSLKGR-CSREN-CKYLH 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.426
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,510,637
Number of extensions: 130834
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 50
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)