RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15047
         (165 letters)



>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 52.0 bits (125), Expect = 9e-11
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 93  RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
           RHP+Y+T+LC+++H  GFCPYG RC+FIH   
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIHNAD 33



 Score = 43.5 bits (103), Expect = 1e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87
          +R   +KTELCR     G C +G  C F H A E
Sbjct: 1  TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
          +  + +KTELCR + E+G C++G  C+FAHG  ELR
Sbjct: 2  TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 37



 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 93  RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
              RY+T+LC++Y + G C YG +C F H   
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLG 34


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 48.5 bits (116), Expect = 2e-09
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
          +KTELCR  +E+G CK+G  C+FAHG HELR
Sbjct: 4  YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34



 Score = 42.4 bits (100), Expect = 3e-07
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 96  RYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
           RY+T+LC+ + + G C YG++C F H   
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAHGFH 31


>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp.
          [TaxId: 1409]}
          Length = 88

 Score = 26.9 bits (59), Expect = 0.48
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 8  HTHYPWDHNEKMDKHWASLRPATE 31
           T  P   N K+D+ WA LRP T+
Sbjct: 65 KTMLPAIQNMKVDRFWAGLRPGTK 88


>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal
           domains {Thermotoga maritima [TaxId: 2336]}
          Length = 78

 Score = 25.0 bits (55), Expect = 2.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 82  AHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYG 114
            +G  E++ I R P  RTK+  + +     P G
Sbjct: 18  ENGIVEIKAIAREPGVRTKVAVASNDPNVDPIG 50


>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
           protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 29

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 98  RTKLCQSYHQDGFCPYGQRCYFIHEE 123
           + +LC+ Y   GFC   + C ++H +
Sbjct: 5   KRELCKFYIT-GFCARAENCPYMHGD 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,584
Number of extensions: 27670
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 30
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)