Query psy15048
Match_columns 207
No_of_seqs 149 out of 403
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:05:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2946|consensus 100.0 7.3E-49 1.6E-53 334.6 13.0 175 21-205 31-234 (234)
2 KOG3103|consensus 100.0 1.2E-40 2.5E-45 286.8 10.8 146 45-203 81-249 (249)
3 COG5080 YIP1 Rab GTPase intera 100.0 9.8E-41 2.1E-45 283.0 8.5 151 40-203 53-226 (227)
4 PF04893 Yip1: Yip1 domain; I 98.1 1.3E-05 2.8E-10 63.5 8.2 131 49-184 9-159 (172)
5 KOG3114|consensus 97.3 0.0018 3.9E-08 58.4 9.2 78 61-139 114-213 (290)
6 PF06930 DUF1282: Protein of u 82.6 11 0.00023 30.8 8.5 51 110-168 88-138 (170)
7 PF06691 DUF1189: Protein of u 50.3 1.7E+02 0.0036 25.3 10.2 35 106-140 187-222 (250)
8 PF06570 DUF1129: Protein of u 47.4 61 0.0013 27.3 6.1 66 97-162 119-190 (206)
9 PF03878 YIF1: YIF1; InterPro 46.4 37 0.0008 30.0 4.7 77 61-140 86-171 (240)
10 PF04061 ORMDL: ORMDL family ; 34.0 26 0.00057 28.6 1.7 18 179-196 86-103 (136)
11 PF03616 Glt_symporter: Sodium 31.1 71 0.0015 29.7 4.2 43 61-128 303-345 (368)
12 PF15190 DUF4583: Domain of un 28.3 32 0.0007 27.7 1.3 14 124-137 95-108 (128)
13 PF03839 Sec62: Translocation 22.8 1.6E+02 0.0034 25.9 4.6 15 120-134 118-132 (224)
14 TIGR00210 gltS sodium--glutama 21.3 1.7E+02 0.0037 27.7 4.9 16 61-76 301-316 (398)
15 PTZ00459 mucin-associated surf 20.2 58 0.0013 29.4 1.5 11 157-167 11-21 (291)
No 1
>KOG2946|consensus
Probab=100.00 E-value=7.3e-49 Score=334.62 Aligned_cols=175 Identities=50% Similarity=0.968 Sum_probs=153.4
Q ss_pred ccccccCCCCCCCC-----CCCCCCCCCCCcchhHHHhhhhhhhh-----------------------hhhhHHHHHHHH
Q psy15048 21 AEGSMNIPGINQNK-----ATGHPEYNTLDEPIRTTIMRDLSAVG-----------------------DLWGPLLLCTFM 72 (207)
Q Consensus 21 ~~g~i~~~~~~~~~-----~~~~~~~~TLDEPv~~Tl~rDl~~I~-----------------------DLwGPLif~l~l 72 (207)
+|++...|++..+. .+...++||||||+|||++||+++|+ |||||+++|+.+
T Consensus 31 ~~~~~~~p~~~a~n~g~g~~~~~~e~dTldePv~~tlkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~l 110 (234)
T KOG2946|consen 31 VEAPASAPGNSAGNSGFGWLLEVNEEDTLDEPVLETLKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFL 110 (234)
T ss_pred ccCCCCCCcccccccCcccccccCCCCcccchHHHHHHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHH
Confidence 55666666443221 22455789999999999999999999 999999999999
Q ss_pred HHHHhCCCCCccCCCCCeEEEEeehhHHHHHHHHHHHhhhcCCcchhhhhHhhhhchHHHHHHH-HHHHHHhhhccchhH
Q psy15048 73 AIVLQGSSDESINDGGPQFAEVFVIVWIGSGVVTLNSKLLGGNISFFQSVCVLGYCLLPLAMSL-VLCRVILFATQTNFL 151 (207)
Q Consensus 73 a~~L~~~~~~~~~~gk~~F~~if~i~~iGs~vv~ln~~LLgg~isf~q~vsvLGYcLlPlvi~a-~i~~~v~~~~~~~~~ 151 (207)
|++|++++..+ ..++|+.+|.+.|+|++++|+|.||+||+|||+|++|++|||++|+++++ ++|.+ +..
T Consensus 111 a~iL~~s~~~~---~~~vFs~vf~i~wfG~~vvtln~kLLGgnIs~fQsl~IlGYCLfPl~v~ali~~~~-------~~l 180 (234)
T KOG2946|consen 111 ALILSLSGSVK---SASVFAVVFAILWFGAVVVTLNIKLLGGNISFFQSLCILGYCLFPLVVAALIICLF-------RDL 180 (234)
T ss_pred HHHHHhhcCcc---cchhHHHHHHHHHHHHHHHHHHHHHhCCceeEEeehhhhhhcccHHHHHHHHHHHH-------HHH
Confidence 99999985321 23799999999999999999999999999999999999999999999998 44433 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEeecchHHHHHHHHHHhhccc
Q psy15048 152 FFIRFLITMFGFGWATFASVSFLGDSQPVGRKGLAVYPIFLFYFVIAWLILSHT 205 (207)
Q Consensus 152 ~~~r~il~~~~v~WSt~as~~fl~~~~~~~rk~L~~YPi~LfY~~~a~Lvi~~~ 205 (207)
+++|+++..++.+||+|||+.|+..+++++||.|++||+||||+.++|+++.|+
T Consensus 181 ~~lr~vv~~~~~~WSsyaa~~~l~~~~~~~kk~LavYPvFL~y~~~s~lii~~n 234 (234)
T KOG2946|consen 181 FFLRLVVTSIGLAWSSYAAMGFLSISQLPRKKLLAVYPVFLFYFSVSWLIISHN 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccccccceehhhHHHHHHhhheEEEecC
Confidence 799999999999999999999999999999999999999999999999999886
No 2
>KOG3103|consensus
Probab=100.00 E-value=1.2e-40 Score=286.80 Aligned_cols=146 Identities=27% Similarity=0.460 Sum_probs=136.2
Q ss_pred CcchhHHHhhhhhhhh---------------------hhhhHHHHHHHHHHHHhCCCCCccCCCCCeEEEEeehhHHHHH
Q psy15048 45 DEPIRTTIMRDLSAVG---------------------DLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIVWIGSG 103 (207)
Q Consensus 45 DEPv~~Tl~rDl~~I~---------------------DLwGPLif~l~la~~L~~~~~~~~~~gk~~F~~if~i~~iGs~ 103 (207)
|||++|||++|+++|+ |||||++||++++++|+++ ||.||||||+++.+||+
T Consensus 81 EpPLLEELgInf~hI~~KT~~VLnP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~-------gKi~FgyIygi~~~gsl 153 (249)
T KOG3103|consen 81 EPPLLEELGINFDHIKQKTRAVLNPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLA-------GKIHFGYIYGISLLGSL 153 (249)
T ss_pred CCchHHHhCCCHHHHHHHHhheecccccCceEEecCcccccchHHHHHHHHHHHhc-------CceEEEEEeeeHHHHHH
Confidence 5789999999999999 9999999999999999998 99999999999999999
Q ss_pred HHHHHHhhhc-CCcchhhhhHhhhhchHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCC
Q psy15048 104 VVTLNSKLLG-GNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFGFGWATFA-SVSFLGDSQPVG 181 (207)
Q Consensus 104 vv~ln~~LLg-g~isf~q~vsvLGYcLlPlvi~a~i~~~v~~~~~~~~~~~~r~il~~~~v~WSt~a-s~~fl~~~~~~~ 181 (207)
.+|+++|+|+ ++++|.+++||+|||++|+|+.|.++.++. .+ ..+|++++.++++||+|| |+.|++..++++
T Consensus 154 ~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~--~~----g~vg~il~~~~v~W~t~aaS~lfv~al~~~~ 227 (249)
T KOG3103|consen 154 SIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVG--LQ----GTVGYILSALFVLWCTYAASKLFVSALSMEN 227 (249)
T ss_pred HHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHh--cc----chHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999999999999999998874 33 489999999999999997 555556689999
Q ss_pred ceEEeecchHHHHHHHHHHhhc
Q psy15048 182 RKGLAVYPIFLFYFVIAWLILS 203 (207)
Q Consensus 182 rk~L~~YPi~LfY~~~a~Lvi~ 203 (207)
||.|++|||+|+|.+|+|+++.
T Consensus 228 ~rlLiaYp~~l~Y~~Fall~if 249 (249)
T KOG3103|consen 228 QRLLVAYPCALLYGVFALIVIF 249 (249)
T ss_pred cchhhhhHHHHHHhhheeEEeC
Confidence 9999999999999999999863
No 3
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.8e-41 Score=283.04 Aligned_cols=151 Identities=30% Similarity=0.554 Sum_probs=135.9
Q ss_pred CCCCCCcchhHHHhhhhhhhh---------------------hhhhHHHHHHHHHHHHhCCCCCccCCCCCeEEEEeehh
Q psy15048 40 EYNTLDEPIRTTIMRDLSAVG---------------------DLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIV 98 (207)
Q Consensus 40 ~~~TLDEPv~~Tl~rDl~~I~---------------------DLwGPLif~l~la~~L~~~~~~~~~~gk~~F~~if~i~ 98 (207)
+....|||++||+.+|+.+|. ||||||+||+++++.|+++ +|.||||||++.
T Consensus 53 g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~~~~~i~~d~DL~gPliF~lL~sLfLsla-------~~shFgyiy~is 125 (227)
T COG5080 53 GVYPGDPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLA-------GKSHFGYIYGIS 125 (227)
T ss_pred CCCCCCccHHHHhcccccccccccceeeecccccchhhhhcccccccHHHHHHHHHHHHhc-------ccceeehhhHHH
Confidence 557889999999999999998 9999999999999999997 899999999999
Q ss_pred HHHHHHHHHHHhhhc-CCcchhhhhHhhhhchHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q psy15048 99 WIGSGVVTLNSKLLG-GNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFGFGWATFASVSFL-GD 176 (207)
Q Consensus 99 ~iGs~vv~ln~~LLg-g~isf~q~vsvLGYcLlPlvi~a~i~~~v~~~~~~~~~~~~r~il~~~~v~WSt~as~~fl-~~ 176 (207)
|+|.+++++++|||| ++++|+|++||+|||+||+|+.|+++.++. +.....+ +++.++.+||+||++.++ +.
T Consensus 126 lfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~-----~i~i~~~-vv~~l~~~Ws~~AaS~v~~~~ 199 (227)
T COG5080 126 LFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILG-----RILILGY-VVVALFLIWSTYAASGVLKSK 199 (227)
T ss_pred HHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999875 2333344 444559999999866666 47
Q ss_pred cCCCCceEEeecchHHHHHHHHHHhhc
Q psy15048 177 SQPVGRKGLAVYPIFLFYFVIAWLILS 203 (207)
Q Consensus 177 ~~~~~rk~L~~YPi~LfY~~~a~Lvi~ 203 (207)
++.++||.+++||++|||.+|+|+++.
T Consensus 200 l~l~n~~llv~Ypl~LFY~~fa~ii~f 226 (227)
T COG5080 200 LQLSNKRLLVVYPLLLFYNVFAIIIKF 226 (227)
T ss_pred HhhhhHHHHHHHHHHHHHhhheEEEEe
Confidence 899999999999999999999998865
No 4
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=98.13 E-value=1.3e-05 Score=63.49 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=81.9
Q ss_pred hHHHhhhhh--hhhhhhhHHHHHHHHHHHHhCCCC-----C-----ccCCCCCeEEEEe-------ehhHHHHHHHHHHH
Q psy15048 49 RTTIMRDLS--AVGDLWGPLLLCTFMAIVLQGSSD-----E-----SINDGGPQFAEVF-------VIVWIGSGVVTLNS 109 (207)
Q Consensus 49 ~~Tl~rDl~--~I~DLwGPLif~l~la~~L~~~~~-----~-----~~~~gk~~F~~if-------~i~~iGs~vv~ln~ 109 (207)
.|+++++-+ +..|++++++.++.+...+..... + +..+....++.++ ....+.+...+...
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 88 (172)
T PF04893_consen 9 FRRLRESPRISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIA 88 (172)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 334999999988877655444310 0 0001122222222 12235555567788
Q ss_pred hhhcCCcchhhhhHhhhhchHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCceE
Q psy15048 110 KLLGGNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFGFGWATFASVSFLGD-SQPVGRKG 184 (207)
Q Consensus 110 ~LLgg~isf~q~vsvLGYcLlPlvi~a~i~~~v~~~~~~~~~~~~r~il~~~~v~WSt~as~~fl~~-~~~~~rk~ 184 (207)
|++||+.++.++.|+.||+..|.++..+++.+... ...........++..|+.+.....++. .+.+.+|.
T Consensus 89 ~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~-----~~~~~~~~~~~l~~iw~~~l~~~gl~~~~~~~~~ka 159 (172)
T PF04893_consen 89 KLFGGKGSFKETFSVVGYALIPLLLGSLISIILSL-----FFGPLSLLVIILFSIWSAYLLVIGLREVHRLSRGKA 159 (172)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 88999999999999999999999999998876532 111234566788999999986666654 45444443
No 5
>KOG3114|consensus
Probab=97.26 E-value=0.0018 Score=58.40 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHHHHHhCCCC------CccCCCCCeEEE-----------EeehhHHHHHHHHHHHhhhc-----CCcch
Q psy15048 61 DLWGPLLLCTFMAIVLQGSSD------ESINDGGPQFAE-----------VFVIVWIGSGVVTLNSKLLG-----GNISF 118 (207)
Q Consensus 61 DLwGPLif~l~la~~L~~~~~------~~~~~gk~~F~~-----------if~i~~iGs~vv~ln~~LLg-----g~isf 118 (207)
||+||+.+|.++.+.+..+.+ .....| .+-++ +|+..|+-.+.++-.++..+ ...++
T Consensus 114 DLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g-~~~g~~f~~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l 192 (290)
T KOG3114|consen 114 DLYGPFWITATLVFALAISGNLATFIRNGTLKG-TAYGYDFGLVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVL 192 (290)
T ss_pred cccccHHHHHHHHHHHHHcccHHHHHHhccccc-eeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeh
Confidence 999999999999988776532 111112 13343 34444444444444333333 45788
Q ss_pred hhhhHhhhhchHHHHHHHHHH
Q psy15048 119 FQSVCVLGYCLLPLAMSLVLC 139 (207)
Q Consensus 119 ~q~vsvLGYcLlPlvi~a~i~ 139 (207)
+-.+|+-||++++.....++.
T Consensus 193 ~~~~~iygysl~i~ip~~vl~ 213 (290)
T KOG3114|consen 193 LELVCIYGYSLFIFIPLLVLW 213 (290)
T ss_pred hhHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999844443
No 6
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=82.58 E-value=11 Score=30.84 Aligned_cols=51 Identities=16% Similarity=0.389 Sum_probs=38.3
Q ss_pred hhhcCCcchhhhhHhhhhchHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q psy15048 110 KLLGGNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFGFGWATF 168 (207)
Q Consensus 110 ~LLgg~isf~q~vsvLGYcLlPlvi~a~i~~~v~~~~~~~~~~~~r~il~~~~v~WSt~ 168 (207)
|-.+++-++-++.-..+|...|+.+..+++.... .+.......++..|+.+
T Consensus 88 ~~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~--------~~l~~~~~~~~~~~~~~ 138 (170)
T PF06930_consen 88 KTFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPS--------LWLTLLVGLIALIYSVY 138 (170)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3335788999999999999999999888876543 23344566777788865
No 7
>PF06691 DUF1189: Protein of unknown function (DUF1189); InterPro: IPR009574 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.
Probab=50.32 E-value=1.7e+02 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHhhhcCCcchhhhhHhhhhchHHH-HHHHHHHH
Q psy15048 106 TLNSKLLGGNISFFQSVCVLGYCLLPL-AMSLVLCR 140 (207)
Q Consensus 106 ~ln~~LLgg~isf~q~vsvLGYcLlPl-vi~a~i~~ 140 (207)
.+..+.++.+++|.++..+.-|+..+- ++.+++..
T Consensus 187 ~i~~~~~~~~lsy~~~~ki~~yA~TlP~ll~~i~~~ 222 (250)
T PF06691_consen 187 LIIAKIMKRKLSYKQLWKISIYAITLPTLLFAIIGL 222 (250)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999998554 44455443
No 8
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=47.45 E-value=61 Score=27.30 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHhhhc------CCcchhhhhHhhhhchHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q psy15048 97 IVWIGSGVVTLNSKLLG------GNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFG 162 (207)
Q Consensus 97 i~~iGs~vv~ln~~LLg------g~isf~q~vsvLGYcLlPlvi~a~i~~~v~~~~~~~~~~~~r~il~~~~ 162 (207)
.+.+|.++++...+.+. ++.++...+.+..-.+....+.-.+..+++...+..+..++.+++++++
T Consensus 119 ~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~ 190 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIA 190 (206)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHH
Confidence 34456566666555543 4556666655554444444433333334332222223344444544443
No 9
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=46.37 E-value=37 Score=30.03 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCccCCCC--C-eEEE----EeehhHHHHHHHHHHHhhhc--CCcchhhhhHhhhhchHH
Q psy15048 61 DLWGPLLLCTFMAIVLQGSSDESINDGG--P-QFAE----VFVIVWIGSGVVTLNSKLLG--GNISFFQSVCVLGYCLLP 131 (207)
Q Consensus 61 DLwGPLif~l~la~~L~~~~~~~~~~gk--~-~F~~----if~i~~iGs~vv~ln~~LLg--g~isf~q~vsvLGYcLlP 131 (207)
||-=|+.-+++|-++-..... -+|+ + +.+. -.++..+=.+++.+..-+++ +++++.-.+|..||-..+
T Consensus 86 DLYIPlMa~vTYiLl~g~~~G---~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ 162 (240)
T PF03878_consen 86 DLYIPLMAFVTYILLSGLILG---LQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVG 162 (240)
T ss_pred ccccchHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHH
Confidence 999999988887664433211 0122 1 1222 22222232333445666666 489999999999999999
Q ss_pred HHHHHHHHH
Q psy15048 132 LAMSLVLCR 140 (207)
Q Consensus 132 lvi~a~i~~ 140 (207)
+++..++..
T Consensus 163 ii~~~l~~~ 171 (240)
T PF03878_consen 163 IILTLLASL 171 (240)
T ss_pred HHHHHHHHH
Confidence 987665553
No 10
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=34.02 E-value=26 Score=28.55 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.6
Q ss_pred CCCceEEeecchHHHHHH
Q psy15048 179 PVGRKGLAVYPIFLFYFV 196 (207)
Q Consensus 179 ~~~rk~L~~YPi~LfY~~ 196 (207)
-+.||+|.+.|+.||...
T Consensus 86 TptrKFL~~vPivLflla 103 (136)
T PF04061_consen 86 TPTRKFLTIVPIVLFLLA 103 (136)
T ss_pred CcceeeeehhHHHHHHHH
Confidence 478999999999999764
No 11
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=31.12 E-value=71 Score=29.69 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCccCCCCCeEEEEeehhHHHHHHHHHHHhhhcCCcchhhhhHhhhhc
Q psy15048 61 DLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIVWIGSGVVTLNSKLLGGNISFFQSVCVLGYC 128 (207)
Q Consensus 61 DLwGPLif~l~la~~L~~~~~~~~~~gk~~F~~if~i~~iGs~vv~ln~~LLgg~isf~q~vsvLGYc 128 (207)
|+++|+++.++...++.. -...++..|++|++ +...+=.-|+|
T Consensus 303 ~~a~Plliil~~q~i~~~-----------------------~f~~fv~fr~~gkd--ydaavm~~G~~ 345 (368)
T PF03616_consen 303 DYALPLLIILAVQTILMV-----------------------LFAYFVTFRVMGKD--YDAAVMSAGFC 345 (368)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------HHHHHHhhhhhCCC--hhHHHHhhhhh
Confidence 999999987776655432 13445667788776 44444445555
No 12
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=28.26 E-value=32 Score=27.70 Aligned_cols=14 Identities=29% Similarity=1.108 Sum_probs=10.8
Q ss_pred hhhhchHHHHHHHH
Q psy15048 124 VLGYCLLPLAMSLV 137 (207)
Q Consensus 124 vLGYcLlPlvi~a~ 137 (207)
-+|||.+|++++.+
T Consensus 95 ~vgycv~P~cl~~~ 108 (128)
T PF15190_consen 95 TVGYCVIPVCLATL 108 (128)
T ss_pred hheeeeHHHHHHHH
Confidence 36999999997443
No 13
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=22.80 E-value=1.6e+02 Score=25.91 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=10.2
Q ss_pred hhhHhhhhchHHHHH
Q psy15048 120 QSVCVLGYCLLPLAM 134 (207)
Q Consensus 120 q~vsvLGYcLlPlvi 134 (207)
-.+.+++-||||+-.
T Consensus 118 ~~~~v~a~~lFPlWP 132 (224)
T PF03839_consen 118 LLVGVIAICLFPLWP 132 (224)
T ss_pred HHHHHHHHHhhhcCh
Confidence 355677788888754
No 14
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=21.31 E-value=1.7e+02 Score=27.65 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHH
Q psy15048 61 DLWGPLLLCTFMAIVL 76 (207)
Q Consensus 61 DLwGPLif~l~la~~L 76 (207)
|+|+|++..++....+
T Consensus 301 ~~a~Plliil~~q~i~ 316 (398)
T TIGR00210 301 DLAGPIALILLVQVMF 316 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888766543
No 15
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=20.20 E-value=58 Score=29.41 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q psy15048 157 LITMFGFGWAT 167 (207)
Q Consensus 157 il~~~~v~WSt 167 (207)
++..+||+||-
T Consensus 11 LVCALCVLWCg 21 (291)
T PTZ00459 11 LVCALCVLWCG 21 (291)
T ss_pred HHHHHHHHhcC
Confidence 56899999996
Done!