Query psy15048
Match_columns 207
No_of_seqs 149 out of 403
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogi_A ESXP, putative ESAT-6-l 19.3 35 0.0012 25.0 1.0 17 49-65 28-44 (101)
2 3arc_Y Protein YCF12; PSII, me 11.1 1.4E+02 0.0047 17.3 1.8 11 62-72 13-23 (29)
3 2lpy_A Matrix protein P10; GAG 8.5 1.8E+02 0.0062 22.2 2.2 21 40-60 46-66 (124)
4 2vga_A Protein A41, A41; immun 8.1 55 0.0019 26.1 -1.0 12 41-52 29-40 (207)
5 3bz1_y Protein YCF12; electron 6.0 2.9E+02 0.0098 17.6 1.8 12 61-72 29-40 (46)
6 1bax_A M-PMV MA, M-PMV matrix 5.8 2.3E+02 0.008 20.6 1.5 21 40-60 47-67 (94)
7 4faj_A PRGZ; substrate binding 5.1 1.5E+02 0.005 26.6 0.0 20 119-138 23-42 (564)
8 3qb2_A Immunity factor for SPN 5.1 2.4E+02 0.0083 22.9 1.3 13 123-135 52-64 (187)
9 3mea_A SAGA-associated factor 4.9 2.7E+02 0.0094 22.4 1.5 7 19-25 31-37 (180)
10 1cqt_I POU domain, class 2, as 3.9 3.2E+02 0.011 17.1 0.9 16 40-55 20-35 (44)
No 1
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_A
Probab=19.28 E-value=35 Score=24.98 Aligned_cols=17 Identities=47% Similarity=0.997 Sum_probs=10.2
Q ss_pred hHHHhhhhhhhhhhhhH
Q psy15048 49 RTTIMRDLSAVGDLWGP 65 (207)
Q Consensus 49 ~~Tl~rDl~~I~DLwGP 65 (207)
-+.+.||+.+-+|+||-
T Consensus 28 HqaI~~dvlaa~dFWGG 44 (101)
T 3ogi_A 28 HQAIVRDVLAAGDFWGG 44 (101)
T ss_dssp HHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhhhhcC
Confidence 35789999999999995
No 2
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=11.15 E-value=1.4e+02 Score=17.35 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.3
Q ss_pred hhhHHHHHHHH
Q psy15048 62 LWGPLLLCTFM 72 (207)
Q Consensus 62 LwGPLif~l~l 72 (207)
+.||+++.++.
T Consensus 13 ~aGP~VI~lLa 23 (29)
T 3arc_Y 13 IAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred hcCChheeehh
Confidence 67999887664
No 3
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=8.52 E-value=1.8e+02 Score=22.20 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=18.5
Q ss_pred CCCCCCcchhHHHhhhhhhhh
Q psy15048 40 EYNTLDEPIRTTIMRDLSAVG 60 (207)
Q Consensus 40 ~~~TLDEPv~~Tl~rDl~~I~ 60 (207)
+.+|||.--|+-++++++..+
T Consensus 46 ~eGtLd~~~W~kVG~~L~~~~ 66 (124)
T 2lpy_A 46 QEGTIDIKRWRRVGDCFQDYY 66 (124)
T ss_dssp TTCCCCSHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHH
Confidence 567899999999999998765
No 4
>2vga_A Protein A41, A41; immunomodulator, chemokine binding protein, glycoprotein, VI protein, early protein; 1.9A {Vaccinia virus}
Probab=8.13 E-value=55 Score=26.09 Aligned_cols=12 Identities=58% Similarity=0.800 Sum_probs=9.6
Q ss_pred CCCCCcchhHHH
Q psy15048 41 YNTLDEPIRTTI 52 (207)
Q Consensus 41 ~~TLDEPv~~Tl 52 (207)
+.|||||+++|-
T Consensus 29 eatldeplrqtt 40 (207)
T 2vga_A 29 EATLDEPLRQTT 40 (207)
T ss_dssp EEEESSCCBCCC
T ss_pred EeecCchhhhhh
Confidence 479999998764
No 5
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=5.98 E-value=2.9e+02 Score=17.64 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHH
Q psy15048 61 DLWGPLLLCTFM 72 (207)
Q Consensus 61 DLwGPLif~l~l 72 (207)
=+.||+++.++.
T Consensus 29 v~aGPlVI~LLa 40 (46)
T 3bz1_y 29 GIAGPMIIFLLA 40 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHcccHHhhhHH
Confidence 578999887764
No 6
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=5.80 E-value=2.3e+02 Score=20.63 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=18.1
Q ss_pred CCCCCCcchhHHHhhhhhhhh
Q psy15048 40 EYNTLDEPIRTTIMRDLSAVG 60 (207)
Q Consensus 40 ~~~TLDEPv~~Tl~rDl~~I~ 60 (207)
+.+|||--.|+-+++|++.-+
T Consensus 47 ~eGtl~l~~W~kVG~~L~~~~ 67 (94)
T 1bax_A 47 QEGTIDIKRWRRVGDCFQDYY 67 (94)
T ss_pred cCCcccHHHHHHHHHHHHHHH
Confidence 557899999999999999764
No 7
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=5.10 E-value=1.5e+02 Score=26.58 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=0.0
Q ss_pred hhhhHhhhhchHHHHHHHHH
Q psy15048 119 FQSVCVLGYCLLPLAMSLVL 138 (207)
Q Consensus 119 ~q~vsvLGYcLlPlvi~a~i 138 (207)
+.-+|.||-.++|+|+++.-
T Consensus 23 ykkfcflgigllplvlascg 42 (564)
T 4faj_A 23 YKKFCFLGIGLLPLVLASCG 42 (564)
T ss_dssp --------------------
T ss_pred hhhheeecccHHHHHHHhcC
Confidence 55689999999999987763
No 8
>3qb2_A Immunity factor for SPN; glycohydrolase inhibitor, streptococcus pyogenes glycohydrol toxin, hydrolase inhibitor; 2.50A {Streptococcus pyogenes} PDB: 3pnt_B
Probab=5.07 E-value=2.4e+02 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.5
Q ss_pred HhhhhchHHHHHH
Q psy15048 123 CVLGYCLLPLAMS 135 (207)
Q Consensus 123 svLGYcLlPlvi~ 135 (207)
-++-|||.|+-+-
T Consensus 52 VLlEYcLYPLYve 64 (187)
T 3qb2_A 52 VILEYGVYPAFIK 64 (187)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHhhhhhhcc
Confidence 3688999999764
No 9
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=4.91 E-value=2.7e+02 Score=22.39 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=3.6
Q ss_pred CCccccc
Q psy15048 19 PQAEGSM 25 (207)
Q Consensus 19 ~~~~g~i 25 (207)
+++-|.+
T Consensus 31 p~lcGa~ 37 (180)
T 3mea_A 31 PPLCGAI 37 (180)
T ss_dssp CTTBTTC
T ss_pred CCccccc
Confidence 3466644
No 10
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=3.86 E-value=3.2e+02 Score=17.09 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=12.4
Q ss_pred CCCCCCcchhHHHhhh
Q psy15048 40 EYNTLDEPIRTTIMRD 55 (207)
Q Consensus 40 ~~~TLDEPv~~Tl~rD 55 (207)
+.-..-|||.|-|+|-
T Consensus 20 qGVRVkePVKELLrRK 35 (44)
T 1cqt_I 20 QGVRVKEPVKELLRRK 35 (44)
T ss_dssp CSCCCSSCHHHHHHHT
T ss_pred cceecccHHHHHHHHh
Confidence 4456789999988874
Done!