Query psy15048
Match_columns 207
No_of_seqs 149 out of 403
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 19:05:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 13.6 50 0.0037 17.2 1.8 14 189-202 6-19 (26)
2 d2nsfa2 d.106.1.2 (A:161-240) 10.0 49 0.0036 21.9 1.2 16 45-60 2-17 (80)
3 d1fkma1 a.69.2.1 (A:249-442) Y 6.8 1.3E+02 0.0093 21.4 2.6 16 44-59 81-96 (194)
4 d1tlqa_ a.195.1.1 (A:) Hypothe 6.5 1.1E+02 0.008 22.5 2.0 30 40-69 72-111 (161)
5 d2p5ka1 a.4.5.3 (A:2-64) Argin 6.3 82 0.0059 19.5 1.0 12 49-60 37-48 (63)
6 d1e3ha4 d.52.3.1 (A:579-632) P 5.7 49 0.0036 20.0 -0.4 19 47-65 2-20 (54)
7 d1v54j_ f.23.4.1 (J:) Mitochon 5.3 3E+02 0.022 16.7 3.3 18 152-169 32-49 (58)
8 d2f76x1 a.61.1.3 (X:1-94) Maso 5.0 1.2E+02 0.0084 20.2 1.2 21 39-59 46-66 (94)
9 d1aoya_ a.4.5.3 (A:) Arginine 4.9 1.1E+02 0.008 19.7 1.0 12 49-60 43-54 (78)
10 d1b4aa1 a.4.5.3 (A:4-78) Argin 4.9 1.1E+02 0.0079 19.5 0.9 12 49-60 35-46 (75)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.56 E-value=50 Score=17.23 Aligned_cols=14 Identities=36% Similarity=0.683 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHhh
Q psy15048 189 PIFLFYFVIAWLIL 202 (207)
Q Consensus 189 Pi~LfY~~~a~Lvi 202 (207)
.+.+|+.+|+.++.
T Consensus 6 aiw~fw~ffalli~ 19 (26)
T d1rzhh2 6 AIYSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678888887764
No 2
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=9.98 E-value=49 Score=21.89 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=14.4
Q ss_pred CcchhHHHhhhhhhhh
Q psy15048 45 DEPIRTTIMRDLSAVG 60 (207)
Q Consensus 45 DEPv~~Tl~rDl~~I~ 60 (207)
-|+++++|.+|+...+
T Consensus 2 P~~vL~~LladIt~~W 17 (80)
T d2nsfa2 2 PEVILRTLAAEITQKW 17 (80)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 5789999999999888
No 3
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.78 E-value=1.3e+02 Score=21.45 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=9.4
Q ss_pred CCcchhHHHhhhhhhh
Q psy15048 44 LDEPIRTTIMRDLSAV 59 (207)
Q Consensus 44 LDEPv~~Tl~rDl~~I 59 (207)
-|.+.++.+.+|+..-
T Consensus 81 ~~~~~~~~I~~Dv~RT 96 (194)
T d1fkma1 81 RDIPTWHQIEIDIPRT 96 (194)
T ss_dssp THHHHHHHHHHHGGGS
T ss_pred cchHHHHHHHHHHHhc
Confidence 3455666666666554
No 4
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=6.54 E-value=1.1e+02 Score=22.54 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCCCCCcchhHHHhhhhhhhh----------hhhhHHHHH
Q psy15048 40 EYNTLDEPIRTTIMRDLSAVG----------DLWGPLLLC 69 (207)
Q Consensus 40 ~~~TLDEPv~~Tl~rDl~~I~----------DLwGPLif~ 69 (207)
+.+.++||..+.+++|-.-.+ .++|.+-|.
T Consensus 72 e~g~l~epl~~ii~~D~~l~giDEvl~~~i~~iyGsigf~ 111 (161)
T d1tlqa_ 72 EQKLLPEPLQHLVETDEPLYGIDEIIPLSIVNVYGSIGLT 111 (161)
T ss_dssp HTTCSCTTHHHHHHHTCTTCCHHHHTTHHHHHTTHHHHHH
T ss_pred HcCCCchHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 568899999999999988776 777776543
No 5
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=6.28 E-value=82 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.8
Q ss_pred hHHHhhhhhhhh
Q psy15048 49 RTTIMRDLSAVG 60 (207)
Q Consensus 49 ~~Tl~rDl~~I~ 60 (207)
-.|+.||+++.+
T Consensus 37 QaTlSRDL~eLg 48 (63)
T d2p5ka1 37 QATVSRDIKELH 48 (63)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 579999998865
No 6
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=5.66 E-value=49 Score=19.97 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=2.3
Q ss_pred chhHHHhhhhhhhhhhhhH
Q psy15048 47 PIRTTIMRDLSAVGDLWGP 65 (207)
Q Consensus 47 Pv~~Tl~rDl~~I~DLwGP 65 (207)
|..++++.+-..|+++.||
T Consensus 2 P~~~~i~Ip~~kig~vIG~ 20 (54)
T d1e3ha4 2 PRIITVKIPVDKIGEVIGP 20 (54)
T ss_dssp CBCC---------------
T ss_pred CeEEEEEeCHHHeeEEECC
Confidence 5556666777676666665
No 7
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.28 E-value=3e+02 Score=16.69 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15048 152 FFIRFLITMFGFGWATFA 169 (207)
Q Consensus 152 ~~~r~il~~~~v~WSt~a 169 (207)
+-....+++.+.+||.|+
T Consensus 32 Yr~Tm~L~~~G~~~s~~~ 49 (58)
T d1v54j_ 32 YRVTMTLCLGGTLYSLYC 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444567778888888774
No 8
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=5.01 E-value=1.2e+02 Score=20.25 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=17.7
Q ss_pred CCCCCCCcchhHHHhhhhhhh
Q psy15048 39 PEYNTLDEPIRTTIMRDLSAV 59 (207)
Q Consensus 39 ~~~~TLDEPv~~Tl~rDl~~I 59 (207)
++.+|||.-.|+-+++|++.-
T Consensus 46 p~~Gtl~~~~W~kvG~~l~~~ 66 (94)
T d2f76x1 46 PQEGTIDIKRWRRVGDCFQDY 66 (94)
T ss_dssp CCCSSCHHHHHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHHH
Confidence 366789999999999999753
No 9
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.91 E-value=1.1e+02 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.9
Q ss_pred hHHHhhhhhhhh
Q psy15048 49 RTTIMRDLSAVG 60 (207)
Q Consensus 49 ~~Tl~rDl~~I~ 60 (207)
-.|+.||+++++
T Consensus 43 QaTiSRDL~eLg 54 (78)
T d1aoya_ 43 QSKVSRMLTKFG 54 (78)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 579999998865
No 10
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.90 E-value=1.1e+02 Score=19.53 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=10.0
Q ss_pred hHHHhhhhhhhh
Q psy15048 49 RTTIMRDLSAVG 60 (207)
Q Consensus 49 ~~Tl~rDl~~I~ 60 (207)
-.|+.||+++++
T Consensus 35 QaTlSRDL~eLg 46 (75)
T d1b4aa1 35 QATVSRDIKEMQ 46 (75)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 579999999866
Done!