RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15048
(207 letters)
>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane
protein [Intracellular trafficking and secretion].
Length = 227
Score = 86.0 bits (213), Expect = 8e-21
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 55 DLSAVGDLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIVWIGSGVVTLNSKLLGG 114
D+ A DLWGPL+ ++ L G F ++ I G+ + L +LLG
Sbjct: 89 DILADCDLWGPLIFILLYSLFL-------SLAGKSHFGYIYGISLFGTLSLHLLLRLLGH 141
Query: 115 -NISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFFIRFLITMFGFGWATFA-SVS 172
NISFF ++ +LGY LLPL + ++ ++ ++ FLI W+T+A S
Sbjct: 142 KNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLI------WSTYAASGV 195
Query: 173 FLGDSQPVGRKGLAVYPIFLFYFVIAWLIL 202
Q ++ L VYP+ LFY V A +I
Sbjct: 196 LKSKLQLSNKRLLVVYPLLLFYNVFAIIIK 225
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 44.0 bits (104), Expect = 1e-05
Identities = 21/105 (20%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 94 VFVIVWIGSGVVTLNSKLLGGNISFFQSVCVLGYCLLPLAMSLVLCRVILFATQTNFLFF 153
+ + +++ + ++ L +KL GG+ SF Q++ ++GY LLPL + ++ ++ L
Sbjct: 72 LLLGLFLLALLLHLIAKLFGGDGSFKQTLSLVGYALLPLILGGLIALLLSL-----LLGA 126
Query: 154 IRFLITMFGFGWATFASVSFLGDSQPVGRKGLAVYPIFLFYFVIA 198
+ L+ + W+ + L + + +K + + L +I
Sbjct: 127 LLLLVGLLALIWSLYLLYLGLKAAHGLSKKKALLVALLLLLLLIV 171
>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase.
This model represents the light-dependent,
NADPH-dependent form of protochlorophyllide reductase.
It belongs to the short chain alcohol dehydrogenase
family, in contrast to the nitrogenase-related
light-independent form [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 314
Score = 31.0 bits (70), Expect = 0.42
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 43 TLDEPIRTTIMRDLSAVGDLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIVWIGS 102
T EP T +LS + G LLC + L+ S ++ + +IV
Sbjct: 95 TAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKD---------KRLIIV---- 141
Query: 103 GVVTLNSKLLGGNI 116
G +T N+ L GN+
Sbjct: 142 GSITGNTNTLAGNV 155
>gnl|CDD|223763 COG0691, SmpB, tmRNA-binding protein [Posttranslational
modification, protein turnover, chaperones].
Length = 153
Score = 28.3 bits (64), Expect = 2.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 TFMA-IVLQGSSDESINDGGPQFAEVFVIV 98
TF A IVLQG+ +S+ G + + +
Sbjct: 23 TFEAGIVLQGTEVKSLRAGKANLKDSYARI 52
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional.
Length = 482
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 151 LFFIRFLITMFGFGWATFASVSFLGDSQPVGRKGLA 186
IR LI +F + F +VS L S KGL+
Sbjct: 3 YNVIRVLILIFCLYVSAFPAVSLLFLSNGSTLKGLS 38
>gnl|CDD|219229 pfam06920, Ded_cyto, Dedicator of cytokinesis. This family
represents a conserved region approximately 200 residues
long within a number of eukaryotic dedicator of
cytokinesis proteins. These are potential guanine
nucleotide exchange factors, which activate some small
GTPases by exchanging bound GDP for free GTP.
Length = 178
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 75 VLQGSSDESINDGGPQFAEVF 95
+LQGS D +N G ++AEVF
Sbjct: 95 LLQGSVDVQVNGGPLKYAEVF 115
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 28.8 bits (64), Expect = 2.7
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 119 FQSVCVLGYCLLPLAMSLVLCRVILFATQT-NFLFFIRFLITMFGFG 164
F S+ +L YC LP A+ L+ + I+ T LFFI +++F G
Sbjct: 822 FTSLPLLAYCTLP-AICLLTGKFIMPPISTFASLFFIALFMSIFATG 867
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 28.2 bits (63), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 181 GRKGLAVYPIFLFYFVIA-WLILS 203
RK L V P+ F+ + WLI +
Sbjct: 4 KRKKLLVLPLMGLVFLGSLWLIFA 27
>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated.
Length = 322
Score = 28.0 bits (63), Expect = 3.5
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 44 LDEPIRTTIMRDLSAVGDLWGPLLLCTFMAIVLQGSSDESINDGGPQFAEVFVIVWIGSG 103
L EP+R+ +LS + G LLC + L+ S VI+ G
Sbjct: 98 LKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPD---------PRLVIL----G 144
Query: 104 VVTLNSKLLGGNI 116
VT N K LGG I
Sbjct: 145 TVTANPKELGGKI 157
>gnl|CDD|215928 pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11.
Length = 180
Score = 27.0 bits (60), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 160 MFGFGWAT---FASVSFLGDSQPVGRKGLAVY-----PIFLFYFVIAW 199
+ G GW T +++ G P G L VY P+ +Y V +W
Sbjct: 37 VVGKGWTTGSTNIVINYSGSYNPNGNSYLCVYGWTRNPLVEYYIVESW 84
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 26.4 bits (59), Expect = 9.5
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 94 VFVIVWIGSGVVTLNSKLLGGNISFFQSVCV-LGYCLLPLAMSLVLCRVILFATQTNFLF 152
+ +V + S ++ L + GG +V +G L L+L V+ + T+ +
Sbjct: 112 IIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGL----GLLLAIVMYYLTKLLYRL 167
Query: 153 FIRFL 157
+++L
Sbjct: 168 LVKYL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.444
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,557,461
Number of extensions: 996504
Number of successful extensions: 1442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 120
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)