BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1505
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 151 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 186
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 138 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 173
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L + +AV +NADI LLD+P + +D
Sbjct: 551 LALARAVLRNADILLLDEPTNHLD 574
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L + +AV +NADI LLD+P + +D
Sbjct: 557 LALARAVLRNADILLLDEPTNHLD 580
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L + +AV +NADI LLD+P + +D
Sbjct: 557 LALARAVLRNADILLLDEPTNHLD 580
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 35 NADIYLLDDPLSAVD 49
NA+IY+LDDP+ A+D
Sbjct: 151 NAEIYVLDDPVVAID 165
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 30 KAVYKNADIYLLDDPLSAVD 49
+A+ N I LLD+PLSA+D
Sbjct: 140 RALVTNPKILLLDEPLSALD 159
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 35 NADIYLLDDPLSAVDMHVGKHLFEDCISG 63
+ ++ LLD+P SA+D + + + ED I+
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAA 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.149 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,770,431
Number of Sequences: 62578
Number of extensions: 56107
Number of successful extensions: 260
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 20
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)