Query psy1505
Match_columns 79
No_of_seqs 145 out of 1716
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 19:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 99.9 1.2E-25 2.7E-30 155.5 6.7 64 8-77 127-190 (240)
2 COG1116 TauB ABC-type nitrate/ 99.9 4.4E-23 9.5E-28 144.3 6.3 64 9-77 122-185 (248)
3 COG1135 AbcC ABC-type metal io 99.9 9E-23 2E-27 146.9 5.7 64 9-78 133-197 (339)
4 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.3E-22 4.9E-27 141.3 7.0 64 8-77 130-193 (254)
5 COG1117 PstB ABC-type phosphat 99.9 1.4E-22 3.1E-27 140.5 5.8 67 8-74 140-208 (253)
6 COG1136 SalX ABC-type antimicr 99.9 3.4E-22 7.4E-27 138.5 6.9 51 10-60 134-185 (226)
7 COG1124 DppF ABC-type dipeptid 99.9 5.6E-22 1.2E-26 138.7 6.0 69 8-76 132-204 (252)
8 COG1120 FepC ABC-type cobalami 99.8 3E-21 6.5E-26 135.9 6.9 65 8-78 129-194 (258)
9 COG2884 FtsE Predicted ATPase 99.8 3.1E-21 6.7E-26 131.9 6.3 65 8-78 128-192 (223)
10 COG4598 HisP ABC-type histidin 99.8 3.4E-21 7.4E-26 131.9 6.4 64 8-77 143-206 (256)
11 TIGR00960 3a0501s02 Type II (G 99.8 5.2E-21 1.1E-25 128.8 7.2 52 9-60 130-181 (216)
12 cd03225 ABC_cobalt_CbiO_domain 99.8 9.9E-21 2.1E-25 126.9 7.5 52 9-60 126-177 (211)
13 TIGR01166 cbiO cobalt transpor 99.8 9.6E-21 2.1E-25 125.5 7.2 63 9-77 119-181 (190)
14 cd03226 ABC_cobalt_CbiO_domain 99.8 9.6E-21 2.1E-25 126.8 7.1 52 9-60 118-169 (205)
15 cd03235 ABC_Metallic_Cations A 99.8 1.3E-20 2.8E-25 126.7 7.7 52 9-60 124-175 (213)
16 COG3638 ABC-type phosphate/pho 99.8 4.7E-21 1E-25 134.0 5.0 64 9-78 139-203 (258)
17 TIGR02673 FtsE cell division A 99.8 1.7E-20 3.7E-25 125.9 7.1 52 9-60 129-180 (214)
18 cd03259 ABC_Carb_Solutes_like 99.8 1.4E-20 3.1E-25 126.4 6.7 52 9-60 122-173 (213)
19 COG1122 CbiO ABC-type cobalt t 99.8 5.3E-21 1.2E-25 132.9 4.6 52 9-60 130-181 (235)
20 cd03292 ABC_FtsE_transporter F 99.8 2.1E-20 4.6E-25 125.3 7.3 52 9-60 128-179 (214)
21 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.8E-20 4E-25 126.1 6.7 52 9-60 132-183 (218)
22 TIGR02314 ABC_MetN D-methionin 99.8 1.6E-20 3.4E-25 136.0 6.8 52 9-60 132-183 (343)
23 TIGR01188 drrA daunorubicin re 99.8 2.1E-20 4.6E-25 132.3 7.3 52 9-60 116-167 (302)
24 COG1125 OpuBA ABC-type proline 99.8 1.2E-20 2.6E-25 133.8 5.8 66 8-73 126-195 (309)
25 PRK13537 nodulation ABC transp 99.8 2.3E-20 5.1E-25 132.7 7.2 64 9-78 130-193 (306)
26 cd03261 ABC_Org_Solvent_Resist 99.8 2.2E-20 4.7E-25 127.3 6.6 52 9-60 128-179 (235)
27 COG0444 DppD ABC-type dipeptid 99.8 1.9E-20 4.1E-25 134.7 6.2 68 9-76 145-216 (316)
28 TIGR02211 LolD_lipo_ex lipopro 99.8 3.5E-20 7.6E-25 125.0 7.1 52 9-60 133-184 (221)
29 TIGR01288 nodI ATP-binding ABC 99.8 3.3E-20 7.1E-25 131.3 7.3 52 9-60 127-178 (303)
30 cd03293 ABC_NrtD_SsuB_transpor 99.8 3.7E-20 8.1E-25 125.1 7.1 52 9-60 123-174 (220)
31 PRK11022 dppD dipeptide transp 99.8 4E-20 8.7E-25 132.7 7.5 52 9-60 145-196 (326)
32 cd03262 ABC_HisP_GlnQ_permease 99.8 4.8E-20 1E-24 123.5 7.4 52 9-60 127-178 (213)
33 PRK13641 cbiO cobalt transport 99.8 4.8E-20 1E-24 129.7 7.6 52 9-60 137-188 (287)
34 cd03256 ABC_PhnC_transporter A 99.8 4.4E-20 9.5E-25 125.7 7.2 52 9-60 136-187 (241)
35 cd03268 ABC_BcrA_bacitracin_re 99.8 3.5E-20 7.6E-25 124.1 6.6 52 9-60 118-169 (208)
36 PRK15093 antimicrobial peptide 99.8 4.3E-20 9.3E-25 132.5 7.4 52 10-61 151-202 (330)
37 PRK11650 ugpC glycerol-3-phosp 99.8 3.7E-20 8.1E-25 134.4 7.1 52 9-60 126-177 (356)
38 cd03266 ABC_NatA_sodium_export 99.8 4.1E-20 8.8E-25 124.4 6.8 52 9-60 128-179 (218)
39 PRK15079 oligopeptide ABC tran 99.8 4.5E-20 9.8E-25 132.8 7.4 52 9-60 153-204 (331)
40 COG1127 Ttg2A ABC-type transpo 99.8 2.1E-20 4.5E-25 131.1 5.4 65 9-73 137-205 (263)
41 cd03301 ABC_MalK_N The N-termi 99.8 5.2E-20 1.1E-24 123.5 7.0 52 9-60 122-173 (213)
42 cd03265 ABC_DrrA DrrA is the A 99.8 5.2E-20 1.1E-24 124.4 7.0 52 9-60 123-174 (220)
43 COG4161 ArtP ABC-type arginine 99.8 2.5E-20 5.5E-25 126.2 5.4 64 6-75 130-193 (242)
44 cd03219 ABC_Mj1267_LivG_branch 99.8 4.9E-20 1.1E-24 125.3 6.7 51 10-60 136-186 (236)
45 COG0410 LivF ABC-type branched 99.8 6.5E-20 1.4E-24 127.5 7.4 65 8-78 127-192 (237)
46 TIGR03608 L_ocin_972_ABC putat 99.8 7.4E-20 1.6E-24 122.1 7.4 52 9-60 126-177 (206)
47 PRK11308 dppF dipeptide transp 99.8 6.9E-20 1.5E-24 131.6 7.6 52 9-60 146-197 (327)
48 cd03257 ABC_NikE_OppD_transpor 99.8 6.2E-20 1.3E-24 123.9 6.9 52 9-60 137-188 (228)
49 cd03218 ABC_YhbG The ABC trans 99.8 6.5E-20 1.4E-24 124.4 7.1 52 9-60 125-176 (232)
50 COG1131 CcmA ABC-type multidru 99.8 5E-20 1.1E-24 130.8 6.8 61 11-77 130-191 (293)
51 PRK13638 cbiO cobalt transport 99.8 7.7E-20 1.7E-24 127.4 7.5 52 9-60 128-179 (271)
52 TIGR02315 ABC_phnC phosphonate 99.8 6.9E-20 1.5E-24 125.0 7.1 52 9-60 137-188 (243)
53 PRK13637 cbiO cobalt transport 99.8 6.9E-20 1.5E-24 129.0 7.3 52 9-60 136-187 (287)
54 PRK13647 cbiO cobalt transport 99.8 7.9E-20 1.7E-24 127.9 7.5 52 9-60 130-181 (274)
55 cd03231 ABC_CcmA_heme_exporter 99.8 8.4E-20 1.8E-24 122.4 7.3 52 9-60 117-168 (201)
56 PRK13651 cobalt transporter AT 99.8 7.4E-20 1.6E-24 130.3 7.3 52 9-60 157-208 (305)
57 PRK13536 nodulation factor exp 99.8 6.8E-20 1.5E-24 132.4 7.2 52 9-60 164-215 (340)
58 PRK10908 cell division protein 99.8 9.1E-20 2E-24 123.3 7.4 52 9-60 129-180 (222)
59 PRK10584 putative ABC transpor 99.8 8.4E-20 1.8E-24 123.7 7.2 52 9-60 138-189 (228)
60 cd03296 ABC_CysA_sulfate_impor 99.8 6.5E-20 1.4E-24 125.4 6.7 52 9-60 128-179 (239)
61 PRK11264 putative amino-acid A 99.8 7.4E-20 1.6E-24 125.4 7.0 51 10-60 137-187 (250)
62 cd03269 ABC_putative_ATPase Th 99.8 8.1E-20 1.8E-24 122.5 7.0 52 9-60 120-171 (210)
63 cd03297 ABC_ModC_molybdenum_tr 99.8 8.1E-20 1.8E-24 123.0 7.0 52 9-60 123-174 (214)
64 PRK11629 lolD lipoprotein tran 99.8 7.5E-20 1.6E-24 124.7 6.9 52 9-60 137-188 (233)
65 cd03224 ABC_TM1139_LivF_branch 99.8 8E-20 1.7E-24 123.1 6.9 52 9-60 124-175 (222)
66 TIGR01189 ccmA heme ABC export 99.8 1E-19 2.2E-24 121.5 7.3 52 9-60 119-170 (198)
67 TIGR01184 ntrCD nitrate transp 99.8 8.4E-20 1.8E-24 124.6 7.1 52 9-60 106-157 (230)
68 PRK09473 oppD oligopeptide tra 99.8 8.2E-20 1.8E-24 131.4 7.3 51 10-60 154-204 (330)
69 cd03214 ABC_Iron-Siderophores_ 99.8 1.2E-19 2.7E-24 119.8 7.3 52 9-60 89-140 (180)
70 COG1137 YhbG ABC-type (unclass 99.8 6.6E-20 1.4E-24 126.5 6.2 64 9-78 131-194 (243)
71 PRK13643 cbiO cobalt transport 99.8 1.1E-19 2.5E-24 127.9 7.4 52 9-60 136-187 (288)
72 PRK13538 cytochrome c biogenes 99.8 1.2E-19 2.7E-24 121.7 7.3 52 9-60 121-172 (204)
73 cd03294 ABC_Pro_Gly_Bertaine T 99.8 1.2E-19 2.6E-24 126.6 7.3 52 9-60 152-203 (269)
74 TIGR03258 PhnT 2-aminoethylpho 99.8 7.5E-20 1.6E-24 133.2 6.5 52 9-60 129-180 (362)
75 PRK11300 livG leucine/isoleuci 99.8 1.1E-19 2.4E-24 124.9 7.0 52 9-60 145-196 (255)
76 PRK13644 cbiO cobalt transport 99.8 1.5E-19 3.2E-24 126.5 7.7 63 9-77 128-190 (274)
77 TIGR01186 proV glycine betaine 99.8 9.6E-20 2.1E-24 132.9 7.0 52 9-60 121-172 (363)
78 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.3E-19 2.9E-24 121.5 7.1 52 9-60 120-171 (211)
79 PRK13539 cytochrome c biogenes 99.8 1.4E-19 3.1E-24 121.7 7.3 52 9-60 119-170 (207)
80 PRK11124 artP arginine transpo 99.8 1.3E-19 2.8E-24 123.9 7.2 52 9-60 133-184 (242)
81 PRK13631 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 129.6 7.6 52 9-60 168-219 (320)
82 PRK11153 metN DL-methionine tr 99.8 1.1E-19 2.4E-24 131.1 6.9 52 9-60 132-183 (343)
83 PRK09493 glnQ glutamine ABC tr 99.8 1.5E-19 3.3E-24 123.4 7.2 52 9-60 128-179 (240)
84 PRK13634 cbiO cobalt transport 99.8 1.5E-19 3.2E-24 127.4 7.4 52 9-60 137-188 (290)
85 PRK13650 cbiO cobalt transport 99.8 1.6E-19 3.4E-24 126.6 7.4 52 9-60 132-183 (279)
86 cd03258 ABC_MetN_methionine_tr 99.8 1.4E-19 2.9E-24 123.1 6.8 52 9-60 132-183 (233)
87 PRK11231 fecE iron-dicitrate t 99.8 1.6E-19 3.6E-24 124.5 7.3 52 9-60 130-181 (255)
88 cd03264 ABC_drug_resistance_li 99.8 1.6E-19 3.5E-24 121.1 7.1 53 9-61 122-174 (211)
89 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.7E-19 3.7E-24 122.9 7.2 52 9-60 134-185 (224)
90 PRK11432 fbpC ferric transport 99.8 1.3E-19 2.8E-24 131.4 6.9 52 9-60 128-179 (351)
91 PRK09536 btuD corrinoid ABC tr 99.8 1.5E-19 3.2E-24 133.4 7.3 63 9-77 131-193 (402)
92 COG4555 NatA ABC-type Na+ tran 99.8 8.6E-20 1.9E-24 126.0 5.6 65 8-78 124-188 (245)
93 PRK11614 livF leucine/isoleuci 99.8 1.6E-19 3.6E-24 123.1 7.0 52 9-60 129-180 (237)
94 PRK11000 maltose/maltodextrin 99.8 1.3E-19 2.8E-24 131.9 6.8 52 9-60 125-176 (369)
95 PRK10851 sulfate/thiosulfate t 99.8 1.4E-19 3.1E-24 131.2 7.0 52 9-60 128-179 (353)
96 PRK13649 cbiO cobalt transport 99.8 1.8E-19 3.9E-24 125.8 7.3 51 10-60 138-188 (280)
97 PRK11831 putative ABC transpor 99.8 1.5E-19 3.3E-24 125.9 6.9 52 9-60 135-186 (269)
98 COG1123 ATPase components of v 99.8 1E-19 2.3E-24 138.1 6.3 64 12-75 149-216 (539)
99 PRK15056 manganese/iron transp 99.8 2.4E-19 5.2E-24 125.1 7.7 52 9-60 134-185 (272)
100 cd03252 ABCC_Hemolysin The ABC 99.8 2E-19 4.4E-24 122.5 7.1 50 11-60 132-181 (237)
101 PRK13639 cbiO cobalt transport 99.8 2.1E-19 4.5E-24 125.7 7.3 52 9-60 129-180 (275)
102 TIGR02324 CP_lyasePhnL phospho 99.8 2.6E-19 5.6E-24 121.1 7.3 50 11-60 143-192 (224)
103 TIGR03771 anch_rpt_ABC anchore 99.8 2.2E-19 4.9E-24 122.1 7.0 52 9-60 105-156 (223)
104 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.9E-19 4.2E-24 123.2 6.7 51 10-60 128-178 (242)
105 PRK13636 cbiO cobalt transport 99.8 2.4E-19 5.2E-24 125.9 7.3 52 9-60 133-184 (283)
106 TIGR01978 sufC FeS assembly AT 99.8 2.7E-19 5.8E-24 121.9 7.3 51 10-60 136-187 (243)
107 COG3839 MalK ABC-type sugar tr 99.8 9.7E-20 2.1E-24 132.2 5.4 53 8-60 124-176 (338)
108 PRK10938 putative molybdenum t 99.8 2.1E-19 4.5E-24 133.5 7.3 52 9-60 127-178 (490)
109 PRK13646 cbiO cobalt transport 99.8 2.6E-19 5.6E-24 125.9 7.3 52 9-60 137-188 (286)
110 PRK10895 lipopolysaccharide AB 99.8 2.5E-19 5.3E-24 122.5 7.0 51 9-59 129-179 (241)
111 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.6E-19 5.7E-24 122.2 7.1 51 10-60 125-175 (236)
112 TIGR02770 nickel_nikD nickel i 99.8 2.3E-19 5E-24 122.2 6.8 52 9-60 117-168 (230)
113 PRK11701 phnK phosphonate C-P 99.8 2.8E-19 6E-24 123.6 7.2 51 10-60 144-194 (258)
114 PRK13645 cbiO cobalt transport 99.8 2.6E-19 5.7E-24 125.8 7.2 52 9-60 142-193 (289)
115 PRK10619 histidine/lysine/argi 99.8 2.8E-19 6.2E-24 123.4 7.2 48 12-59 147-194 (257)
116 PRK14250 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 122.2 7.5 52 9-60 123-174 (241)
117 TIGR01187 potA spermidine/putr 99.8 2.3E-19 5E-24 128.5 6.8 52 9-60 92-143 (325)
118 PRK09452 potA putrescine/sperm 99.8 2.3E-19 4.9E-24 131.3 6.9 52 9-60 136-187 (375)
119 PRK11248 tauB taurine transpor 99.8 3.1E-19 6.8E-24 123.8 7.2 52 9-60 120-171 (255)
120 TIGR02142 modC_ABC molybdenum 99.8 2.7E-19 5.8E-24 129.4 7.1 52 9-60 123-174 (354)
121 PRK10575 iron-hydroxamate tran 99.8 3.4E-19 7.4E-24 123.8 7.4 52 9-60 139-190 (265)
122 TIGR01277 thiQ thiamine ABC tr 99.8 3.5E-19 7.6E-24 120.0 7.2 52 9-60 120-171 (213)
123 PRK09580 sufC cysteine desulfu 99.8 3.9E-19 8.4E-24 121.6 7.5 51 10-60 137-188 (248)
124 TIGR03265 PhnT2 putative 2-ami 99.8 2E-19 4.4E-24 130.4 6.5 52 9-60 126-177 (353)
125 PRK15134 microcin C ABC transp 99.8 2.3E-19 5.1E-24 134.5 7.0 51 10-60 149-199 (529)
126 PRK14273 phosphate ABC transpo 99.8 3.9E-19 8.4E-24 122.4 7.6 51 10-60 143-193 (254)
127 PRK14242 phosphate transporter 99.8 3.7E-19 7.9E-24 122.3 7.4 51 10-60 142-192 (253)
128 PRK13635 cbiO cobalt transport 99.8 3.4E-19 7.4E-24 125.0 7.4 52 9-60 132-183 (279)
129 TIGR02323 CP_lyasePhnK phospho 99.8 3E-19 6.4E-24 122.8 7.0 52 9-60 140-191 (253)
130 TIGR00972 3a0107s01c2 phosphat 99.8 3.8E-19 8.1E-24 122.1 7.4 52 9-60 136-187 (247)
131 PRK13540 cytochrome c biogenes 99.8 3.6E-19 7.8E-24 119.1 7.1 52 9-60 119-170 (200)
132 TIGR03410 urea_trans_UrtE urea 99.8 3.2E-19 7E-24 121.0 7.0 52 9-60 123-174 (230)
133 PRK11288 araG L-arabinose tran 99.8 2.1E-19 4.6E-24 134.0 6.6 51 10-60 389-439 (501)
134 PRK09700 D-allose transporter 99.8 2.1E-19 4.5E-24 134.1 6.6 51 10-60 402-452 (510)
135 PRK10771 thiQ thiamine transpo 99.8 3.9E-19 8.4E-24 121.1 7.3 52 9-60 121-172 (232)
136 PRK13549 xylose transporter AT 99.8 2.2E-19 4.7E-24 134.1 6.5 51 10-60 398-448 (506)
137 PRK11144 modC molybdate transp 99.8 3.1E-19 6.6E-24 129.1 7.1 52 9-60 120-171 (352)
138 PRK13652 cbiO cobalt transport 99.8 4.2E-19 9E-24 124.3 7.5 52 9-60 129-180 (277)
139 PRK13633 cobalt transporter AT 99.8 3.9E-19 8.5E-24 124.5 7.3 52 9-60 136-187 (280)
140 PRK10261 glutathione transport 99.8 3.2E-19 6.9E-24 136.6 7.4 51 10-60 161-211 (623)
141 PRK09984 phosphonate/organopho 99.8 3.5E-19 7.6E-24 123.3 6.9 52 9-60 144-195 (262)
142 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.8E-19 8.3E-24 123.3 7.1 52 9-60 107-158 (246)
143 PRK14245 phosphate ABC transpo 99.8 4.7E-19 1E-23 121.8 7.4 51 10-60 139-189 (250)
144 COG1123 ATPase components of v 99.8 2.1E-19 4.5E-24 136.5 6.1 69 8-76 420-492 (539)
145 cd03234 ABCG_White The White s 99.8 5.4E-19 1.2E-23 120.0 7.5 52 9-60 135-186 (226)
146 CHL00131 ycf16 sulfate ABC tra 99.8 4.9E-19 1.1E-23 121.5 7.3 51 10-60 143-194 (252)
147 TIGR03873 F420-0_ABC_ATP propo 99.8 5E-19 1.1E-23 122.1 7.4 52 9-60 129-180 (256)
148 PRK14247 phosphate ABC transpo 99.8 4.6E-19 1E-23 121.7 7.2 52 10-61 139-190 (250)
149 TIGR03740 galliderm_ABC gallid 99.8 3.7E-19 8E-24 120.4 6.6 52 9-60 116-167 (223)
150 cd03260 ABC_PstB_phosphate_tra 99.8 5.4E-19 1.2E-23 119.7 7.4 51 11-61 133-185 (227)
151 cd03263 ABC_subfamily_A The AB 99.8 4.7E-19 1E-23 119.4 7.0 53 9-61 125-177 (220)
152 PRK11607 potG putrescine trans 99.8 4.2E-19 9.1E-24 129.9 7.3 51 9-59 141-191 (377)
153 COG3840 ThiQ ABC-type thiamine 99.8 3.1E-19 6.7E-24 122.0 6.1 52 8-59 120-171 (231)
154 TIGR02769 nickel_nikE nickel i 99.8 4.1E-19 9E-24 123.4 6.8 51 10-60 143-193 (265)
155 PRK09700 D-allose transporter 99.8 3.2E-19 6.9E-24 133.2 6.6 51 10-60 138-188 (510)
156 PRK10253 iron-enterobactin tra 99.8 5.6E-19 1.2E-23 122.7 7.4 52 9-60 135-186 (265)
157 TIGR03411 urea_trans_UrtD urea 99.8 4.7E-19 1E-23 121.0 6.9 52 9-60 135-186 (242)
158 PRK14268 phosphate ABC transpo 99.8 5.3E-19 1.2E-23 122.3 7.2 51 10-60 147-197 (258)
159 PRK11247 ssuB aliphatic sulfon 99.8 5E-19 1.1E-23 123.4 7.1 52 9-60 125-176 (257)
160 COG4175 ProV ABC-type proline/ 99.8 2.6E-19 5.6E-24 129.9 5.8 52 8-59 155-206 (386)
161 PRK15112 antimicrobial peptide 99.8 4.8E-19 1E-23 123.3 6.9 52 9-60 141-192 (267)
162 PRK13543 cytochrome c biogenes 99.8 5.7E-19 1.2E-23 119.3 7.0 52 9-60 129-180 (214)
163 PRK13642 cbiO cobalt transport 99.8 6.2E-19 1.3E-23 123.4 7.4 52 9-60 132-183 (277)
164 PRK10418 nikD nickel transport 99.8 5.8E-19 1.2E-23 121.9 7.1 51 10-60 133-183 (254)
165 TIGR03269 met_CoM_red_A2 methy 99.8 4.1E-19 9E-24 132.8 6.9 51 10-60 420-470 (520)
166 COG1118 CysA ABC-type sulfate/ 99.8 3E-19 6.5E-24 128.8 5.8 52 9-60 129-180 (345)
167 PRK10982 galactose/methyl gala 99.8 3.3E-19 7E-24 132.6 6.2 51 10-60 384-434 (491)
168 PRK09544 znuC high-affinity zi 99.8 5.7E-19 1.2E-23 122.5 7.0 52 9-60 112-163 (251)
169 cd03253 ABCC_ATM1_transporter 99.8 6.4E-19 1.4E-23 119.8 7.1 50 11-60 131-180 (236)
170 TIGR03269 met_CoM_red_A2 methy 99.8 5.2E-19 1.1E-23 132.3 7.2 52 9-60 160-211 (520)
171 TIGR03522 GldA_ABC_ATP gliding 99.8 5.2E-19 1.1E-23 125.2 6.8 52 9-60 125-176 (301)
172 cd03267 ABC_NatA_like Similar 99.8 6.7E-19 1.5E-23 120.6 7.1 52 9-60 145-196 (236)
173 PRK10070 glycine betaine trans 99.8 5.7E-19 1.2E-23 130.2 7.1 52 9-60 156-207 (400)
174 PRK10261 glutathione transport 99.8 5.7E-19 1.2E-23 135.2 7.4 52 9-60 455-506 (623)
175 PRK14249 phosphate ABC transpo 99.8 9.1E-19 2E-23 120.4 7.6 51 10-60 140-190 (251)
176 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 7.5E-19 1.6E-23 119.7 7.1 50 11-60 133-182 (238)
177 PRK15439 autoinducer 2 ABC tra 99.8 5.2E-19 1.1E-23 132.4 6.9 51 10-60 133-183 (510)
178 PRK14248 phosphate ABC transpo 99.8 8.1E-19 1.7E-23 121.9 7.4 52 9-60 156-207 (268)
179 PRK10762 D-ribose transporter 99.8 4.4E-19 9.5E-24 132.3 6.4 51 10-60 134-184 (501)
180 PRK10762 D-ribose transporter 99.8 4.4E-19 9.6E-24 132.3 6.4 51 10-60 388-438 (501)
181 cd03245 ABCC_bacteriocin_expor 99.8 7.9E-19 1.7E-23 118.3 7.0 48 14-61 137-184 (220)
182 cd03254 ABCC_Glucan_exporter_l 99.8 8.2E-19 1.8E-23 118.8 7.1 50 11-60 133-182 (229)
183 PRK10247 putative ABC transpor 99.8 8.5E-19 1.8E-23 119.2 7.2 51 10-60 130-180 (225)
184 TIGR02633 xylG D-xylose ABC tr 99.8 5.5E-19 1.2E-23 131.5 6.8 50 11-60 397-446 (500)
185 PRK13548 hmuV hemin importer A 99.8 9.4E-19 2E-23 121.3 7.5 52 9-60 126-183 (258)
186 PRK14240 phosphate transporter 99.8 1E-18 2.2E-23 120.0 7.5 51 10-60 139-189 (250)
187 TIGR03005 ectoine_ehuA ectoine 99.8 8.1E-19 1.8E-23 120.7 7.1 52 9-60 138-189 (252)
188 PRK13648 cbiO cobalt transport 99.8 8.9E-19 1.9E-23 121.9 7.3 52 9-60 134-185 (269)
189 PRK13549 xylose transporter AT 99.8 5.1E-19 1.1E-23 132.1 6.5 51 10-60 136-186 (506)
190 COG3842 PotA ABC-type spermidi 99.8 2E-19 4.4E-24 131.1 4.2 52 8-59 127-178 (352)
191 PRK10982 galactose/methyl gala 99.8 5.4E-19 1.2E-23 131.4 6.6 51 10-60 127-177 (491)
192 PRK15134 microcin C ABC transp 99.8 7.1E-19 1.5E-23 131.9 7.2 51 10-60 418-468 (529)
193 TIGR02633 xylG D-xylose ABC tr 99.8 6.4E-19 1.4E-23 131.2 6.9 49 12-60 136-184 (500)
194 PRK13632 cbiO cobalt transport 99.8 9.9E-19 2.2E-23 121.9 7.4 52 9-60 134-185 (271)
195 PRK15439 autoinducer 2 ABC tra 99.8 4.8E-19 1E-23 132.6 6.2 51 10-60 396-446 (510)
196 PRK14259 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 121.8 7.5 51 10-60 147-197 (269)
197 PRK13640 cbiO cobalt transport 99.8 1E-18 2.3E-23 122.6 7.4 52 9-60 135-186 (282)
198 cd03248 ABCC_TAP TAP, the Tran 99.8 1.1E-18 2.3E-23 118.2 7.2 53 9-61 142-194 (226)
199 PRK10744 pstB phosphate transp 99.8 1.2E-18 2.6E-23 120.6 7.5 52 10-61 149-200 (260)
200 PRK14235 phosphate transporter 99.8 1.2E-18 2.6E-23 121.3 7.5 51 10-60 156-206 (267)
201 cd03251 ABCC_MsbA MsbA is an e 99.8 8.9E-19 1.9E-23 118.9 6.7 50 11-60 132-181 (234)
202 PRK13541 cytochrome c biogenes 99.8 1.2E-18 2.6E-23 116.2 7.2 66 9-74 115-183 (195)
203 TIGR03415 ABC_choXWV_ATP choli 99.8 8E-19 1.7E-23 128.9 6.8 52 9-60 156-207 (382)
204 cd03238 ABC_UvrA The excision 99.8 1.3E-18 2.8E-23 116.2 7.2 50 11-60 81-132 (176)
205 PRK14239 phosphate transporter 99.8 1.2E-18 2.6E-23 119.5 7.3 52 10-61 141-192 (252)
206 cd03299 ABC_ModC_like Archeal 99.8 1.2E-18 2.5E-23 119.2 7.1 52 9-60 121-172 (235)
207 PRK11288 araG L-arabinose tran 99.8 7E-19 1.5E-23 131.2 6.5 51 10-60 133-183 (501)
208 cd03246 ABCC_Protease_Secretio 99.8 1.2E-18 2.5E-23 114.5 6.8 43 18-60 97-139 (173)
209 PRK14241 phosphate transporter 99.8 1.3E-18 2.8E-23 120.2 7.3 51 10-60 141-191 (258)
210 TIGR02982 heterocyst_DevA ABC 99.8 1.2E-18 2.6E-23 117.9 7.0 52 9-60 133-184 (220)
211 PRK14267 phosphate ABC transpo 99.8 1.2E-18 2.6E-23 119.8 7.1 51 10-60 142-192 (253)
212 PRK14265 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 121.4 7.7 53 9-61 153-205 (274)
213 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.4E-18 3E-23 116.5 7.1 48 13-60 100-147 (200)
214 PRK03695 vitamin B12-transport 99.8 1.6E-18 3.5E-23 119.6 7.5 52 9-60 118-176 (248)
215 cd03216 ABC_Carb_Monos_I This 99.8 1.6E-18 3.5E-23 113.4 7.0 45 16-60 81-125 (163)
216 PRK14272 phosphate ABC transpo 99.8 1.7E-18 3.7E-23 118.8 7.4 51 10-60 141-191 (252)
217 PRK14269 phosphate ABC transpo 99.8 1.8E-18 4E-23 118.7 7.5 51 10-60 135-185 (246)
218 cd03270 ABC_UvrA_I The excisio 99.8 1.8E-18 3.8E-23 118.4 7.3 51 10-60 130-182 (226)
219 PRK14255 phosphate ABC transpo 99.8 1.9E-18 4E-23 118.8 7.5 51 10-60 141-191 (252)
220 cd03233 ABC_PDR_domain1 The pl 99.8 1.4E-18 3.1E-23 116.7 6.7 50 11-60 112-161 (202)
221 PRK14253 phosphate ABC transpo 99.8 2.1E-18 4.6E-23 118.3 7.5 52 9-60 137-188 (249)
222 PRK14244 phosphate ABC transpo 99.8 1.7E-18 3.8E-23 119.0 7.1 50 11-60 143-192 (251)
223 cd03230 ABC_DR_subfamily_A Thi 99.8 1.9E-18 4E-23 113.6 6.9 43 18-60 96-138 (173)
224 COG4172 ABC-type uncharacteriz 99.8 6.9E-19 1.5E-23 131.1 5.2 53 8-60 148-200 (534)
225 COG4608 AppF ABC-type oligopep 99.8 9E-19 2E-23 123.8 5.6 69 7-75 99-171 (268)
226 PRK14274 phosphate ABC transpo 99.8 2E-18 4.4E-23 119.3 7.3 51 10-60 148-198 (259)
227 PRK14243 phosphate transporter 99.8 2.4E-18 5.2E-23 119.6 7.5 51 10-60 144-194 (264)
228 cd03300 ABC_PotA_N PotA is an 99.8 1.9E-18 4.2E-23 117.8 6.9 52 9-60 122-173 (232)
229 PRK10419 nikE nickel transport 99.8 2.2E-18 4.7E-23 120.2 7.2 51 10-60 144-194 (268)
230 PRK13409 putative ATPase RIL; 99.8 1.9E-18 4.1E-23 132.2 7.5 52 9-60 445-496 (590)
231 cd03215 ABC_Carb_Monos_II This 99.8 1.9E-18 4.2E-23 114.3 6.6 43 18-60 105-147 (182)
232 PRK14238 phosphate transporter 99.8 2.6E-18 5.6E-23 120.0 7.5 51 10-60 160-210 (271)
233 PRK14270 phosphate ABC transpo 99.8 2.8E-18 6E-23 118.0 7.5 52 10-61 140-191 (251)
234 PRK13546 teichoic acids export 99.8 2.6E-18 5.6E-23 120.2 7.4 52 9-60 135-186 (264)
235 cd03290 ABCC_SUR1_N The SUR do 99.8 2.8E-18 6.2E-23 115.7 7.4 47 12-58 135-181 (218)
236 PRK14254 phosphate ABC transpo 99.8 2.8E-18 6.1E-23 120.8 7.6 52 10-61 173-224 (285)
237 PRK14251 phosphate ABC transpo 99.8 2.6E-18 5.6E-23 118.0 7.2 52 10-61 140-191 (251)
238 PRK14275 phosphate ABC transpo 99.8 2.7E-18 5.8E-23 120.9 7.4 53 9-61 174-226 (286)
239 PRK14262 phosphate ABC transpo 99.8 2.8E-18 6.1E-23 117.8 7.3 51 10-60 139-189 (250)
240 PRK14260 phosphate ABC transpo 99.8 2.9E-18 6.2E-23 118.7 7.4 52 9-60 142-193 (259)
241 PRK14256 phosphate ABC transpo 99.8 2.9E-18 6.3E-23 118.0 7.3 51 10-60 141-191 (252)
242 PRK14266 phosphate ABC transpo 99.8 3.4E-18 7.5E-23 117.3 7.5 51 10-60 139-189 (250)
243 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.5E-18 7.5E-23 114.6 7.3 51 11-61 119-169 (207)
244 cd03247 ABCC_cytochrome_bd The 99.8 3.1E-18 6.6E-23 112.8 6.9 46 15-60 96-141 (178)
245 PRK14258 phosphate ABC transpo 99.8 3.3E-18 7.2E-23 118.6 7.4 51 10-60 143-193 (261)
246 cd03250 ABCC_MRP_domain1 Domai 99.8 3.5E-18 7.6E-23 114.3 7.3 49 11-59 121-169 (204)
247 PRK10938 putative molybdenum t 99.8 1.8E-18 3.9E-23 128.5 6.4 52 10-61 394-445 (490)
248 PRK14236 phosphate transporter 99.8 3.3E-18 7.1E-23 119.4 7.4 51 10-60 161-211 (272)
249 cd03223 ABCD_peroxisomal_ALDP 99.7 2.9E-18 6.2E-23 112.4 6.6 60 14-73 88-147 (166)
250 cd03213 ABCG_EPDR ABCG transpo 99.7 3.5E-18 7.6E-23 114.3 7.0 44 17-60 111-154 (194)
251 TIGR00968 3a0106s01 sulfate AB 99.7 3.5E-18 7.7E-23 116.9 7.1 52 9-60 122-173 (237)
252 COG4181 Predicted ABC-type tra 99.7 2.2E-18 4.7E-23 117.2 5.8 51 9-59 138-188 (228)
253 PRK14261 phosphate ABC transpo 99.7 3.8E-18 8.2E-23 117.5 7.1 50 11-60 143-192 (253)
254 cd03244 ABCC_MRP_domain2 Domai 99.7 4.1E-18 8.9E-23 114.9 7.1 50 12-61 134-183 (221)
255 cd03232 ABC_PDR_domain2 The pl 99.7 3.8E-18 8.2E-23 113.8 6.8 44 17-60 108-151 (192)
256 PRK14237 phosphate transporter 99.7 5.3E-18 1.2E-22 118.0 7.6 51 10-60 156-206 (267)
257 cd03229 ABC_Class3 This class 99.7 4.2E-18 9.1E-23 112.3 6.7 43 18-60 101-143 (178)
258 PRK13547 hmuV hemin importer A 99.7 4.6E-18 1E-22 119.3 7.2 52 9-60 137-197 (272)
259 PRK14263 phosphate ABC transpo 99.7 7.9E-18 1.7E-22 117.1 7.4 52 10-61 142-193 (261)
260 PRK13545 tagH teichoic acids e 99.7 6.9E-18 1.5E-22 128.5 7.6 52 9-60 135-186 (549)
261 PRK14257 phosphate ABC transpo 99.7 8.2E-18 1.8E-22 121.0 7.4 51 10-60 218-268 (329)
262 PRK14264 phosphate ABC transpo 99.7 9.4E-18 2E-22 119.1 7.5 52 10-61 193-244 (305)
263 COG4172 ABC-type uncharacteriz 99.7 3.7E-18 8E-23 127.2 5.4 54 8-61 417-470 (534)
264 PRK14271 phosphate ABC transpo 99.7 9.8E-18 2.1E-22 117.5 7.3 51 10-60 156-206 (276)
265 COG0411 LivG ABC-type branched 99.7 9E-18 2E-22 117.5 6.9 69 9-77 141-213 (250)
266 cd03228 ABCC_MRP_Like The MRP 99.7 1.1E-17 2.5E-22 109.6 6.8 43 18-60 97-139 (171)
267 PRK15064 ABC transporter ATP-b 99.7 4.5E-18 9.8E-23 127.6 5.2 63 12-74 150-212 (530)
268 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.3E-17 2.8E-22 116.4 7.0 52 9-60 131-182 (255)
269 PRK14246 phosphate ABC transpo 99.7 1.6E-17 3.4E-22 115.4 7.2 51 10-60 146-196 (257)
270 PRK15064 ABC transporter ATP-b 99.7 1.1E-17 2.4E-22 125.5 6.9 66 9-74 430-495 (530)
271 PRK14252 phosphate ABC transpo 99.7 1.8E-17 3.9E-22 115.0 7.5 51 10-60 154-204 (265)
272 PRK13409 putative ATPase RIL; 99.7 1.4E-17 3E-22 127.4 7.3 52 9-60 204-255 (590)
273 PRK11174 cysteine/glutathione 99.7 9.6E-18 2.1E-22 126.6 5.9 59 14-72 482-542 (588)
274 TIGR01842 type_I_sec_PrtD type 99.7 1.8E-17 4E-22 124.5 7.3 49 12-60 449-497 (544)
275 PRK10636 putative ABC transpor 99.7 8E-18 1.7E-22 129.3 5.3 65 10-74 142-206 (638)
276 cd03222 ABC_RNaseL_inhibitor T 99.7 2.5E-17 5.4E-22 110.1 6.9 43 18-60 72-114 (177)
277 cd03288 ABCC_SUR2 The SUR doma 99.7 2.7E-17 5.8E-22 113.9 7.1 49 12-60 151-199 (257)
278 TIGR02868 CydC thiol reductant 99.7 2.3E-17 5E-22 123.3 6.8 46 15-60 468-513 (529)
279 PRK11819 putative ABC transpor 99.7 1.1E-17 2.4E-22 126.4 5.2 64 11-74 157-220 (556)
280 COG4148 ModC ABC-type molybdat 99.7 9.5E-18 2.1E-22 120.4 4.5 65 8-78 119-184 (352)
281 PRK11147 ABC transporter ATPas 99.7 1.3E-17 2.7E-22 127.9 5.4 63 12-74 151-213 (635)
282 cd03271 ABC_UvrA_II The excisi 99.7 3.8E-17 8.2E-22 115.0 7.4 51 10-60 162-215 (261)
283 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 1.7E-17 3.6E-22 127.8 5.9 61 14-74 612-672 (710)
284 COG4525 TauB ABC-type taurine 99.7 1.1E-17 2.4E-22 115.6 4.2 53 8-60 123-175 (259)
285 COG2274 SunT ABC-type bacterio 99.7 1.6E-17 3.4E-22 129.6 5.5 62 13-74 605-668 (709)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.5E-17 3.2E-22 125.5 5.1 64 11-74 155-218 (552)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3E-17 6.5E-22 123.9 6.7 65 10-74 436-500 (552)
288 PLN03211 ABC transporter G-25; 99.7 2.9E-17 6.3E-22 127.0 6.8 49 12-60 201-249 (659)
289 PRK10636 putative ABC transpor 99.7 2.2E-17 4.8E-22 126.9 5.5 65 10-74 423-487 (638)
290 PRK11819 putative ABC transpor 99.7 4.3E-17 9.2E-22 123.3 6.7 65 10-74 438-502 (556)
291 TIGR01257 rim_protein retinal- 99.7 5.2E-17 1.1E-21 137.0 7.5 52 9-60 2062-2113(2272)
292 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 3.5E-17 7.5E-22 125.8 5.8 60 14-73 585-644 (686)
293 PRK11147 ABC transporter ATPas 99.7 3.1E-17 6.7E-22 125.8 5.4 66 9-74 432-497 (635)
294 PRK11176 lipid transporter ATP 99.7 3.8E-17 8.1E-22 123.1 5.8 59 15-73 478-538 (582)
295 cd03289 ABCC_CFTR2 The CFTR su 99.7 8.9E-17 1.9E-21 113.3 7.3 53 9-61 119-182 (275)
296 TIGR01192 chvA glucan exporter 99.7 8.4E-17 1.8E-21 122.3 7.4 63 11-73 465-529 (585)
297 TIGR02203 MsbA_lipidA lipid A 99.7 3.7E-17 8E-22 122.7 5.3 58 16-73 468-527 (571)
298 TIGR02857 CydD thiol reductant 99.7 7.9E-17 1.7E-21 120.4 7.0 60 14-73 455-516 (529)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.8E-17 1.9E-21 103.5 6.3 58 15-72 68-125 (144)
300 TIGR00954 3a01203 Peroxysomal 99.7 4.8E-17 1E-21 125.4 5.8 60 15-74 580-639 (659)
301 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.1E-16 2.3E-21 121.0 7.2 44 16-59 469-512 (555)
302 PLN03073 ABC transporter F fam 99.7 5.3E-17 1.2E-21 126.6 5.8 66 9-74 336-401 (718)
303 COG1119 ModF ABC-type molybden 99.7 1.1E-16 2.4E-21 112.4 6.6 53 8-60 162-214 (257)
304 cd03291 ABCC_CFTR1 The CFTR su 99.7 1.6E-16 3.4E-21 112.4 7.5 47 13-59 155-201 (282)
305 PRK10522 multidrug transporter 99.7 1.3E-16 2.7E-21 120.2 7.4 46 15-60 447-492 (547)
306 PRK10789 putative multidrug tr 99.7 1.4E-16 3E-21 120.5 7.4 49 13-61 447-495 (569)
307 PRK15177 Vi polysaccharide exp 99.7 7.5E-17 1.6E-21 109.4 5.0 52 9-60 96-147 (213)
308 PRK13657 cyclic beta-1,2-gluca 99.7 8.1E-17 1.8E-21 121.9 5.7 60 14-73 468-529 (588)
309 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.2E-16 4.8E-21 101.9 6.9 44 17-60 80-123 (157)
310 TIGR03375 type_I_sec_LssB type 99.7 9.5E-17 2.1E-21 123.5 6.0 60 14-73 598-659 (694)
311 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.7E-16 5.8E-21 106.4 7.6 53 8-60 114-176 (213)
312 COG1129 MglA ABC-type sugar tr 99.7 1.4E-16 3E-21 120.4 6.7 62 11-78 139-200 (500)
313 PLN03073 ABC transporter F fam 99.7 9.1E-17 2E-21 125.3 5.9 65 10-74 620-684 (718)
314 TIGR01193 bacteriocin_ABC ABC- 99.7 1.7E-16 3.8E-21 122.3 7.4 48 14-61 608-655 (708)
315 cd03278 ABC_SMC_barmotin Barmo 99.7 1.7E-16 3.8E-21 106.9 6.5 53 9-61 105-161 (197)
316 COG4152 ABC-type uncharacteriz 99.7 7.8E-17 1.7E-21 113.9 4.9 64 9-78 122-185 (300)
317 TIGR01257 rim_protein retinal- 99.7 1.5E-16 3.2E-21 134.3 7.4 53 9-61 1053-1105(2272)
318 PRK10535 macrolide transporter 99.7 2.2E-16 4.9E-21 121.5 7.7 52 9-60 136-187 (648)
319 PRK10790 putative multidrug tr 99.7 2.3E-16 4.9E-21 119.4 7.4 48 14-61 473-520 (592)
320 TIGR00955 3a01204 The Eye Pigm 99.7 1.6E-16 3.4E-21 121.7 6.2 62 10-77 153-220 (617)
321 cd03273 ABC_SMC2_euk Eukaryoti 99.7 3.9E-16 8.4E-21 107.8 7.6 52 9-60 158-213 (251)
322 PRK11160 cysteine/glutathione 99.7 2.6E-16 5.7E-21 119.2 7.3 48 14-61 472-519 (574)
323 TIGR01846 type_I_sec_HlyB type 99.7 2.8E-16 6.2E-21 121.0 7.5 60 13-72 589-650 (694)
324 COG1132 MdlB ABC-type multidru 99.7 2.5E-16 5.4E-21 118.8 6.8 46 15-60 463-508 (567)
325 PTZ00265 multidrug resistance 99.7 2.5E-16 5.4E-21 129.8 7.2 47 14-60 1355-1401(1466)
326 TIGR00958 3a01208 Conjugate Tr 99.6 1.6E-16 3.5E-21 123.0 5.6 59 15-73 615-673 (711)
327 KOG0055|consensus 99.6 2E-16 4.4E-21 128.0 6.2 46 15-60 487-532 (1228)
328 cd03272 ABC_SMC3_euk Eukaryoti 99.6 4.4E-16 9.4E-21 106.2 6.9 50 11-60 152-205 (243)
329 PTZ00265 multidrug resistance 99.6 3.2E-16 6.9E-21 129.1 7.2 49 12-60 574-622 (1466)
330 TIGR02204 MsbA_rel ABC transpo 99.6 4E-16 8.7E-21 117.3 7.1 48 14-61 473-520 (576)
331 PLN03140 ABC transporter G fam 99.6 4.4E-16 9.5E-21 128.4 7.7 51 10-60 1007-1062(1470)
332 COG0488 Uup ATPase components 99.6 2.3E-16 5.1E-21 119.9 5.0 63 12-75 148-211 (530)
333 cd03276 ABC_SMC6_euk Eukaryoti 99.6 8.1E-16 1.8E-20 103.7 6.5 52 9-60 101-156 (198)
334 TIGR00956 3a01205 Pleiotropic 99.6 6.1E-16 1.3E-20 127.0 6.9 52 9-60 889-945 (1394)
335 TIGR00630 uvra excinuclease AB 99.6 7.6E-16 1.6E-20 122.9 7.1 61 11-77 481-543 (924)
336 PRK00349 uvrA excinuclease ABC 99.6 6.7E-16 1.4E-20 123.4 6.7 62 11-78 483-546 (943)
337 COG4619 ABC-type uncharacteriz 99.6 6.6E-16 1.4E-20 104.8 5.2 65 9-78 125-189 (223)
338 KOG0058|consensus 99.6 6.1E-16 1.3E-20 120.2 5.7 48 13-60 600-647 (716)
339 cd03275 ABC_SMC1_euk Eukaryoti 99.6 9.7E-16 2.1E-20 105.8 5.8 51 10-60 148-202 (247)
340 COG4988 CydD ABC-type transpor 99.6 8.5E-16 1.8E-20 117.1 5.8 45 17-61 456-500 (559)
341 cd03240 ABC_Rad50 The catalyti 99.6 1.9E-15 4.2E-20 102.2 6.5 53 8-60 106-165 (204)
342 PLN03232 ABC transporter C fam 99.6 9E-16 2E-20 126.5 5.8 61 14-74 737-800 (1495)
343 TIGR00956 3a01205 Pleiotropic 99.6 1E-15 2.3E-20 125.6 5.8 46 14-59 206-251 (1394)
344 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.7E-15 5.9E-20 102.2 6.5 52 9-60 119-174 (212)
345 COG4559 ABC-type hemin transpo 99.6 2.6E-15 5.6E-20 104.6 5.6 52 8-59 126-183 (259)
346 PLN03130 ABC transporter C fam 99.6 2E-15 4.2E-20 125.4 5.8 62 13-74 736-800 (1622)
347 TIGR00957 MRP_assoc_pro multi 99.6 2.6E-15 5.7E-20 123.9 6.1 64 11-74 754-822 (1522)
348 TIGR01271 CFTR_protein cystic 99.6 2.5E-15 5.5E-20 123.9 6.0 62 12-73 543-607 (1490)
349 COG4107 PhnK ABC-type phosphon 99.6 3.6E-15 7.8E-20 102.1 5.7 53 8-60 142-194 (258)
350 KOG0055|consensus 99.6 2.7E-15 6E-20 121.5 5.9 47 13-59 1122-1168(1228)
351 COG1129 MglA ABC-type sugar tr 99.6 2.5E-15 5.4E-20 113.7 4.9 63 10-78 394-456 (500)
352 COG4778 PhnL ABC-type phosphon 99.6 1.3E-15 2.8E-20 103.8 3.1 61 10-76 145-205 (235)
353 KOG0061|consensus 99.6 4.1E-15 8.9E-20 114.5 6.1 63 10-78 158-225 (613)
354 COG3845 ABC-type uncharacteriz 99.6 5.3E-15 1.1E-19 111.4 6.0 62 11-78 134-195 (501)
355 COG4987 CydC ABC-type transpor 99.6 8.6E-15 1.9E-19 111.4 6.8 62 11-72 468-531 (573)
356 PTZ00243 ABC transporter; Prov 99.6 9.3E-15 2E-19 121.1 7.5 51 10-60 775-825 (1560)
357 PRK00349 uvrA excinuclease ABC 99.6 1E-14 2.2E-19 116.6 7.2 50 11-60 824-876 (943)
358 KOG0057|consensus 99.5 8.2E-15 1.8E-19 111.7 6.0 51 11-61 481-531 (591)
359 PRK00635 excinuclease ABC subu 99.5 1E-14 2.2E-19 121.8 6.9 61 11-77 470-532 (1809)
360 PRK00635 excinuclease ABC subu 99.5 1.2E-14 2.6E-19 121.3 7.2 61 11-77 803-866 (1809)
361 COG4618 ArpD ABC-type protease 99.5 1E-14 2.2E-19 110.7 6.2 56 16-77 471-526 (580)
362 KOG0059|consensus 99.5 9.5E-15 2.1E-19 116.0 5.7 52 8-59 689-740 (885)
363 PLN03232 ABC transporter C fam 99.5 9.9E-15 2.2E-19 120.4 6.0 48 14-61 1368-1415(1495)
364 COG4586 ABC-type uncharacteriz 99.5 1.4E-14 3E-19 103.7 5.6 52 9-60 148-199 (325)
365 TIGR00630 uvra excinuclease AB 99.5 2.4E-14 5.1E-19 114.4 7.4 51 10-60 821-874 (924)
366 COG4133 CcmA ABC-type transpor 99.5 1.9E-14 4E-19 98.3 5.7 54 8-61 121-174 (209)
367 PLN03130 ABC transporter C fam 99.5 2.6E-14 5.6E-19 118.8 7.5 47 15-61 1372-1418(1622)
368 COG0488 Uup ATPase components 99.5 1.5E-14 3.2E-19 110.1 5.1 67 9-75 431-497 (530)
369 PLN03140 ABC transporter G fam 99.5 9.3E-15 2E-19 120.7 3.7 48 12-59 331-378 (1470)
370 PF00005 ABC_tran: ABC transpo 99.5 2.4E-14 5.2E-19 89.8 4.6 35 12-46 103-137 (137)
371 cd03239 ABC_SMC_head The struc 99.5 9.8E-14 2.1E-18 92.4 7.0 43 18-60 95-141 (178)
372 cd03277 ABC_SMC5_euk Eukaryoti 99.5 5.5E-14 1.2E-18 95.9 5.7 52 9-60 118-173 (213)
373 TIGR00957 MRP_assoc_pro multi 99.5 7.7E-14 1.7E-18 115.4 7.4 46 16-61 1420-1465(1522)
374 KOG0062|consensus 99.5 3.9E-14 8.4E-19 107.6 4.9 69 8-76 189-257 (582)
375 COG4604 CeuD ABC-type enteroch 99.5 1.7E-14 3.7E-19 99.8 2.7 51 9-59 127-177 (252)
376 COG4136 ABC-type uncharacteriz 99.5 3.4E-14 7.4E-19 95.4 4.1 52 9-60 126-177 (213)
377 PTZ00243 ABC transporter; Prov 99.5 5.4E-14 1.2E-18 116.6 5.5 47 15-61 1443-1490(1560)
378 TIGR01271 CFTR_protein cystic 99.5 5.5E-14 1.2E-18 116.1 5.5 46 16-61 1352-1397(1490)
379 KOG0054|consensus 99.5 5.9E-14 1.3E-18 115.2 4.7 64 12-75 638-704 (1381)
380 KOG0927|consensus 99.4 1.4E-13 3E-18 105.1 5.6 54 8-61 212-265 (614)
381 PRK10246 exonuclease subunit S 99.4 4.5E-13 9.8E-18 107.9 7.3 61 11-77 943-1011(1047)
382 COG1101 PhnK ABC-type uncharac 99.4 3.7E-13 7.9E-18 94.0 5.3 52 8-59 139-190 (263)
383 cd03241 ABC_RecN RecN ATPase i 99.4 5.3E-13 1.2E-17 93.6 5.9 47 14-60 167-217 (276)
384 COG4674 Uncharacterized ABC-ty 99.4 1.1E-13 2.3E-18 95.8 2.0 52 9-60 139-190 (249)
385 PHA02562 46 endonuclease subun 99.4 6E-13 1.3E-17 99.9 6.1 51 11-61 462-523 (562)
386 TIGR00618 sbcc exonuclease Sbc 99.4 7.7E-13 1.7E-17 106.2 7.0 51 10-60 943-1003(1042)
387 COG5265 ATM1 ABC-type transpor 99.4 5E-13 1.1E-17 100.0 4.2 44 16-59 398-441 (497)
388 COG4167 SapF ABC-type antimicr 99.4 1.1E-12 2.3E-17 90.6 4.9 52 9-60 141-192 (267)
389 cd03227 ABC_Class2 ABC-type Cl 99.4 2.5E-12 5.4E-17 83.9 6.3 44 17-60 77-124 (162)
390 COG1245 Predicted ATPase, RNas 99.3 1.3E-12 2.9E-17 98.8 5.4 67 8-74 446-516 (591)
391 PRK03918 chromosome segregatio 99.3 2.7E-12 5.9E-17 100.5 6.5 49 12-60 783-837 (880)
392 TIGR00606 rad50 rad50. This fa 99.3 4.6E-12 1E-16 103.7 6.8 48 12-59 1194-1247(1311)
393 COG4178 ABC-type uncharacteriz 99.3 2.7E-12 5.8E-17 99.0 5.0 52 11-62 509-560 (604)
394 TIGR00634 recN DNA repair prot 99.3 5.7E-12 1.2E-16 96.0 6.5 45 16-60 439-487 (563)
395 COG1245 Predicted ATPase, RNas 99.3 4.7E-12 1E-16 95.9 5.9 68 9-76 205-275 (591)
396 KOG0927|consensus 99.3 1.8E-12 3.9E-17 99.1 3.2 53 9-61 501-553 (614)
397 cd03280 ABC_MutS2 MutS2 homolo 99.3 7.9E-12 1.7E-16 83.9 5.7 49 9-58 83-131 (200)
398 TIGR02168 SMC_prok_B chromosom 99.3 7.2E-12 1.6E-16 98.9 5.5 53 9-61 1081-1137(1179)
399 COG4170 SapD ABC-type antimicr 99.2 2E-12 4.4E-17 90.9 1.6 53 8-60 149-201 (330)
400 KOG0062|consensus 99.2 6.7E-12 1.4E-16 95.6 4.0 53 9-61 474-526 (582)
401 KOG0065|consensus 99.2 2.3E-12 5.1E-17 105.4 0.9 63 9-77 917-984 (1391)
402 KOG0056|consensus 99.2 8.2E-12 1.8E-16 95.7 3.6 46 13-58 670-715 (790)
403 PRK10869 recombination and rep 99.2 3.5E-11 7.6E-16 91.9 6.9 46 16-61 429-478 (553)
404 COG0178 UvrA Excinuclease ATPa 99.2 4.6E-11 9.9E-16 94.7 6.5 66 11-76 816-887 (935)
405 PRK01156 chromosome segregatio 99.2 5.8E-11 1.3E-15 93.8 7.1 48 13-60 797-850 (895)
406 COG0396 sufC Cysteine desulfur 99.2 8.2E-11 1.8E-15 82.5 6.9 64 8-77 134-198 (251)
407 cd03242 ABC_RecF RecF is a rec 99.2 5.8E-11 1.3E-15 83.1 5.5 47 15-61 181-236 (270)
408 TIGR02169 SMC_prok_A chromosom 99.1 8.9E-11 1.9E-15 93.2 5.1 52 10-61 1067-1122(1164)
409 KOG0060|consensus 99.1 1.1E-10 2.4E-15 90.0 5.2 53 14-66 567-619 (659)
410 TIGR02680 conserved hypothetic 99.1 1.4E-10 3E-15 95.7 5.6 64 8-71 1238-1313(1353)
411 COG3845 ABC-type uncharacteriz 99.1 9.2E-11 2E-15 88.7 4.2 62 11-78 397-458 (501)
412 KOG0066|consensus 99.0 2.5E-10 5.4E-15 87.1 4.9 50 12-61 699-748 (807)
413 COG1134 TagH ABC-type polysacc 99.0 1.1E-09 2.3E-14 77.1 6.0 66 9-74 139-207 (249)
414 TIGR00611 recf recF protein. A 99.0 7.9E-10 1.7E-14 80.9 5.2 46 16-61 274-328 (365)
415 PRK00064 recF recombination pr 99.0 8.7E-10 1.9E-14 80.3 5.2 49 13-61 269-326 (361)
416 PRK02224 chromosome segregatio 98.9 1.5E-09 3.3E-14 85.5 5.6 48 13-60 777-836 (880)
417 KOG0054|consensus 98.9 1.8E-09 3.9E-14 89.3 5.3 50 11-60 1265-1318(1381)
418 smart00534 MUTSac ATPase domai 98.9 2.5E-09 5.4E-14 71.1 5.1 49 9-58 53-101 (185)
419 cd03285 ABC_MSH2_euk MutS2 hom 98.8 6.3E-09 1.4E-13 71.4 5.2 46 12-57 84-134 (222)
420 COG4138 BtuD ABC-type cobalami 98.8 8.4E-10 1.8E-14 75.9 -0.3 65 8-78 116-187 (248)
421 cd03243 ABC_MutS_homologs The 98.8 1.6E-08 3.5E-13 67.8 5.7 47 11-58 85-131 (202)
422 PF13558 SbcCD_C: Putative exo 98.8 2E-08 4.3E-13 60.5 5.5 50 11-60 26-88 (90)
423 PRK14079 recF recombination pr 98.8 1.5E-08 3.2E-13 73.7 5.6 46 16-61 262-316 (349)
424 KOG0066|consensus 98.7 2.2E-09 4.8E-14 82.0 0.3 51 8-58 403-453 (807)
425 COG0419 SbcC ATPase involved i 98.7 3.3E-08 7.2E-13 78.9 6.6 49 12-60 810-866 (908)
426 PF13304 AAA_21: AAA domain; P 98.7 1.2E-07 2.5E-12 61.3 7.4 51 11-61 230-283 (303)
427 PTZ00132 GTP-binding nuclear p 98.7 3.9E-08 8.5E-13 65.9 4.9 39 22-60 157-200 (215)
428 cd03282 ABC_MSH4_euk MutS4 hom 98.6 6.3E-08 1.4E-12 65.9 5.0 47 10-57 84-130 (204)
429 PRK00409 recombination and DNA 98.6 6E-08 1.3E-12 76.9 5.1 48 10-58 383-430 (782)
430 KOG2355|consensus 98.6 3.4E-08 7.3E-13 69.4 3.1 59 15-78 145-203 (291)
431 COG0178 UvrA Excinuclease ATPa 98.6 1E-07 2.2E-12 76.1 6.2 61 11-77 475-537 (935)
432 KOG0064|consensus 98.6 2.2E-08 4.8E-13 77.4 1.9 49 13-61 608-656 (728)
433 KOG0063|consensus 98.5 9.2E-08 2E-12 72.6 4.1 47 8-54 447-493 (592)
434 PF02463 SMC_N: RecF/RecN/SMC 98.5 3.9E-07 8.6E-12 61.2 6.6 47 15-61 134-184 (220)
435 KOG0063|consensus 98.5 7.8E-08 1.7E-12 73.0 2.7 50 9-58 205-254 (592)
436 TIGR01069 mutS2 MutS2 family p 98.4 4.9E-07 1.1E-11 71.8 5.9 47 10-57 378-424 (771)
437 cd01124 KaiC KaiC is a circadi 98.4 8.5E-07 1.8E-11 57.7 4.9 50 10-59 64-122 (187)
438 cd03283 ABC_MutS-like MutS-lik 98.3 2.9E-06 6.2E-11 57.4 6.5 37 22-58 90-128 (199)
439 cd03281 ABC_MSH5_euk MutS5 hom 98.3 3.1E-06 6.6E-11 57.8 6.0 37 20-56 93-129 (213)
440 COG4615 PvdE ABC-type sideroph 98.2 2.1E-06 4.6E-11 64.9 5.5 59 14-77 445-503 (546)
441 KOG0065|consensus 98.2 5.3E-07 1.1E-11 74.7 1.1 49 11-59 254-302 (1391)
442 COG2401 ABC-type ATPase fused 98.2 2E-06 4.3E-11 65.4 3.9 51 8-58 498-548 (593)
443 TIGR03185 DNA_S_dndD DNA sulfu 97.9 3.4E-05 7.3E-10 60.0 6.9 45 13-58 547-597 (650)
444 cd03284 ABC_MutS1 MutS1 homolo 97.9 1.3E-05 2.8E-10 54.8 3.4 45 15-59 83-137 (216)
445 PRK13695 putative NTPase; Prov 97.6 7.9E-05 1.7E-09 48.7 3.7 48 13-60 74-123 (174)
446 KOG0933|consensus 97.5 3E-05 6.6E-10 63.2 1.1 48 14-61 1079-1130(1174)
447 PRK08533 flagellar accessory p 97.4 0.00034 7.3E-09 48.2 5.2 43 17-59 95-145 (230)
448 PF13175 AAA_15: AAA ATPase do 97.3 0.00067 1.5E-08 48.6 6.0 49 12-60 336-394 (415)
449 cd03286 ABC_MSH6_euk MutS6 hom 97.3 0.00073 1.6E-08 46.5 5.7 44 16-59 88-133 (218)
450 COG3910 Predicted ATPase [Gene 97.2 0.00078 1.7E-08 46.8 5.1 59 12-77 124-182 (233)
451 COG4637 Predicted ATPase [Gene 97.2 0.00085 1.8E-08 49.5 5.4 47 15-61 268-316 (373)
452 COG1196 Smc Chromosome segrega 97.2 0.00048 1E-08 56.8 4.0 50 12-61 1061-1114(1163)
453 KOG0964|consensus 97.1 0.00015 3.2E-09 59.3 0.9 46 15-60 1095-1144(1200)
454 PF13166 AAA_13: AAA domain 97.1 0.0024 5.3E-08 49.6 7.0 49 13-61 496-553 (712)
455 PRK06067 flagellar accessory p 97.0 0.0026 5.6E-08 43.3 6.0 42 17-58 100-146 (234)
456 cd01120 RecA-like_NTPases RecA 96.9 0.0038 8.2E-08 38.7 5.9 35 15-49 65-99 (165)
457 PRK13891 conjugal transfer pro 96.9 0.0015 3.3E-08 52.6 4.9 33 28-60 680-713 (852)
458 PRK13830 conjugal transfer pro 96.9 0.00054 1.2E-08 54.9 1.9 28 33-60 650-678 (818)
459 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0048 1E-07 42.6 6.1 41 16-56 89-131 (222)
460 cd01128 rho_factor Transcripti 96.5 0.0012 2.5E-08 46.4 1.2 34 15-50 127-168 (249)
461 KOG0018|consensus 95.9 0.0062 1.3E-07 50.4 2.5 52 10-61 1044-1099(1141)
462 cd01125 repA Hexameric Replica 95.8 0.0043 9.3E-08 42.5 1.3 28 31-59 107-140 (239)
463 KOG0962|consensus 95.8 0.0093 2E-07 50.2 3.4 41 18-58 1184-1230(1294)
464 PRK13873 conjugal transfer ATP 95.5 0.021 4.4E-07 45.8 4.2 30 30-59 630-660 (811)
465 KOG0996|consensus 95.0 0.013 2.8E-07 49.0 1.7 48 13-60 1191-1242(1293)
466 COG1195 RecF Recombinational D 95.0 0.035 7.5E-07 41.3 3.8 45 15-59 273-326 (363)
467 TIGR02858 spore_III_AA stage I 94.9 0.076 1.6E-06 37.8 5.2 19 28-46 187-205 (270)
468 PRK05399 DNA mismatch repair p 94.8 0.099 2.1E-06 42.5 6.1 42 11-52 660-706 (854)
469 PRK13898 type IV secretion sys 94.6 0.068 1.5E-06 42.8 4.7 29 31-59 638-667 (800)
470 PRK06793 fliI flagellum-specif 94.0 0.11 2.3E-06 39.5 4.5 38 14-51 218-262 (432)
471 smart00382 AAA ATPases associa 93.7 0.61 1.3E-05 27.2 6.7 45 13-57 56-100 (148)
472 PF13514 AAA_27: AAA domain 93.2 0.22 4.7E-06 41.3 5.4 49 12-60 1020-1076(1111)
473 PRK04863 mukB cell division pr 93.2 0.045 9.7E-07 46.9 1.4 50 14-64 1362-1428(1486)
474 COG4694 Uncharacterized protei 92.6 0.27 5.9E-06 39.0 4.9 48 13-60 524-580 (758)
475 PF09818 ABC_ATPase: Predicted 92.4 0.3 6.5E-06 37.4 4.8 48 14-61 319-366 (448)
476 TIGR02655 circ_KaiC circadian 92.0 0.013 2.9E-07 44.4 -2.9 41 9-59 107-149 (484)
477 cd01131 PilT Pilus retraction 91.7 0.35 7.7E-06 32.3 4.1 30 27-59 66-95 (198)
478 COG4913 Uncharacterized protei 91.3 0.35 7.7E-06 39.6 4.3 48 16-63 989-1049(1104)
479 PRK00454 engB GTP-binding prot 90.7 0.32 6.9E-06 31.4 3.0 43 13-59 143-188 (196)
480 PF00488 MutS_V: MutS domain V 90.5 2.5 5.4E-05 29.3 7.5 47 12-58 97-145 (235)
481 COG0497 RecN ATPase involved i 87.8 2.3 5E-05 33.5 6.3 45 15-59 429-477 (557)
482 TIGR01420 pilT_fam pilus retra 87.5 1.1 2.4E-05 32.5 4.2 31 26-59 186-216 (343)
483 TIGR02788 VirB11 P-type DNA tr 87.4 1.2 2.6E-05 31.9 4.3 20 27-46 210-229 (308)
484 PRK08699 DNA polymerase III su 87.0 0.48 1E-05 34.4 2.1 54 18-73 93-152 (325)
485 PRK14088 dnaA chromosomal repl 86.9 1.3 2.8E-05 33.4 4.4 26 34-59 193-219 (440)
486 TIGR00152 dephospho-CoA kinase 86.3 0.15 3.2E-06 33.6 -0.9 39 20-60 60-98 (188)
487 KOG0250|consensus 85.3 0.32 6.9E-06 40.7 0.5 52 10-61 982-1037(1074)
488 TIGR02903 spore_lon_C ATP-depe 83.5 1.3 2.7E-05 34.9 3.1 24 37-61 267-290 (615)
489 TIGR01070 mutS1 DNA mismatch r 82.7 5.7 0.00012 32.6 6.5 45 12-56 646-692 (840)
490 TIGR03581 EF_0839 conserved hy 81.3 2.1 4.5E-05 30.3 3.2 35 27-64 168-202 (236)
491 COG4938 Uncharacterized conser 80.8 1.8 4E-05 32.1 2.9 41 32-78 256-297 (374)
492 PF07071 DUF1341: Protein of u 79.4 1.1 2.3E-05 31.4 1.2 36 27-65 168-203 (218)
493 cd00009 AAA The AAA+ (ATPases 77.4 8.1 0.00018 22.6 4.6 34 25-59 74-107 (151)
494 PRK14087 dnaA chromosomal repl 77.3 8 0.00017 29.3 5.5 35 26-60 197-232 (450)
495 cd02023 UMPK Uridine monophosp 75.6 0.91 2E-05 29.8 0.0 40 10-52 76-115 (198)
496 PRK06893 DNA replication initi 69.8 6.9 0.00015 26.6 3.3 27 33-59 89-116 (229)
497 PRK08181 transposase; Validate 69.3 9.6 0.00021 27.1 4.0 28 33-60 165-193 (269)
498 TIGR01243 CDC48 AAA family ATP 64.2 22 0.00047 28.5 5.5 34 27-60 263-306 (733)
499 cd01876 YihA_EngB The YihA (En 64.0 8.9 0.00019 23.2 2.7 42 14-59 119-165 (170)
500 PTZ00454 26S protease regulato 63.5 26 0.00057 26.2 5.5 33 28-60 231-273 (398)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=155.46 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=56.6
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+++++.||.+|||||+|||+|||||+.+|+++++|||||+|||+...++++. +..+.+.|+|++
T Consensus 127 ~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~v------m~~LA~eGmTMi 190 (240)
T COG1126 127 ADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMI 190 (240)
T ss_pred hhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH------HHHHHHcCCeEE
Confidence 5789999999999999999999999999999999999999999999999994 455555555544
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.4e-23 Score=144.33 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=54.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
++.++||++|||||||||+|||||+.+|++++||||+++||+..+..+.+++ ...+.+++.|++
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l-----~~lw~~~~~Tvl 185 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL-----LRLWEETRKTVL 185 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH-----HHHHHhhCCEEE
Confidence 6899999999999999999999999999999999999999999999998873 333444444444
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9e-23 Score=146.86 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=56.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc-CCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS-PGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~-~g~~~~~ 78 (79)
+++++||.+|||||||||+|||||+.+|++++.|||||+|||...+.++++ +..++. .|.|+++
T Consensus 133 dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L------L~~In~~lglTIvl 197 (339)
T COG1135 133 DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL------LKDINRELGLTIVL 197 (339)
T ss_pred hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH------HHHHHHHcCCEEEE
Confidence 788999999999999999999999999999999999999999999999995 455543 3666553
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.3e-22 Score=141.29 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=55.9
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++++.++|||||+|||-|||||+++|++++|||||+|+|+..+..++++ +..++++|.||+
T Consensus 130 ~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l------L~~l~~eg~tIl 193 (254)
T COG1121 130 EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL------LKELRQEGKTVL 193 (254)
T ss_pred hhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH------HHHHHHCCCEEE
Confidence 3789999999999999999999999999999999999999999999999995 444444455544
No 5
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=140.50 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI 74 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~ 74 (79)
|+.+++.+..|||||+|||+|||||+.+|++|||||||++|||....++.+++. ...+++.+++|++
T Consensus 140 KDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 140 KDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 688999999999999999999999999999999999999999999999999765 4456666677765
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.4e-22 Score=138.47 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=47.9
Q ss_pred Hhc-cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKK-KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~-~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+ ++|.+|||||||||+|||||+.+|++|+.||||++||..+...+++++
T Consensus 134 ~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 134 RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 344 889999999999999999999999999999999999999999999964
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.6e-22 Score=138.70 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=58.4
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL 76 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~ 76 (79)
+++++++|.+|||||+||++|||||+.+|++||+||||++||...+.++++++. +-+++..+.+|+.++
T Consensus 132 ~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 132 PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 578999999999999999999999999999999999999999999999999753 223444455555443
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=3e-21 Score=135.90 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=57.2
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhh-cCCceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMIN-SPGIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~-~~g~~~~~ 78 (79)
.+++++++.+||||||||+.|||||+++|++++|||||++||..++-+++++ +..++ ++|.|+++
T Consensus 129 ~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l------l~~l~~~~~~tvv~ 194 (258)
T COG1120 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL------LRDLNREKGLTVVM 194 (258)
T ss_pred HHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH------HHHHHHhcCCEEEE
Confidence 4688999999999999999999999999999999999999999999999994 55554 44666553
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.84 E-value=3.1e-21 Score=131.93 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=57.7
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
+++++..|.+|||||+|||+||||++++|+++|.||||.+|||....+++++ ...++..|.||++
T Consensus 128 ~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l------feeinr~GtTVl~ 192 (223)
T COG2884 128 KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL------FEEINRLGTTVLM 192 (223)
T ss_pred chhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH------HHHHhhcCcEEEE
Confidence 5788999999999999999999999999999999999999999999999994 5556666666654
No 10
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=3.4e-21 Score=131.94 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=57.1
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++.+.||..|||||+||++|||||+.+|+++++||||++|||+..-+++. .+..+.++|.|++
T Consensus 143 ~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk------v~~~LAeEgrTMv 206 (256)
T COG4598 143 AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK------VMQDLAEEGRTMV 206 (256)
T ss_pred hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH------HHHHHHHhCCeEE
Confidence 467789999999999999999999999999999999999999999999999 4566666666655
No 11
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.84 E-value=5.2e-21 Score=128.79 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 130 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 130 GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 12
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=9.9e-21 Score=126.88 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 126 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 177 (211)
T cd03225 126 GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177 (211)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999954
No 13
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=9.6e-21 Score=125.54 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=53.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.++ +..+..+|.+++
T Consensus 119 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~------l~~~~~~~~til 181 (190)
T TIGR01166 119 GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI------LRRLRAEGMTVV 181 (190)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------HHHHHHcCCEEE
Confidence 456889999999999999999999999999999999999999999999995 444444455544
No 14
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=9.6e-21 Score=126.80 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 118 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (205)
T cd03226 118 ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 (205)
T ss_pred hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 15
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.83 E-value=1.3e-20 Score=126.67 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 124 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (213)
T cd03235 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175 (213)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.7e-21 Score=133.97 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=56.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc-CCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS-PGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~-~g~~~~~ 78 (79)
+++..++.+|||||+|||+|||||+++|+++|.|||+++|||.....+++. +..++. +|.|+++
T Consensus 139 ~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~------l~~in~~~g~Tvi~ 203 (258)
T COG3638 139 DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI------LKDINQEDGITVIV 203 (258)
T ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHH------HHHHHHHcCCEEEE
Confidence 678889999999999999999999999999999999999999999999994 555543 4677664
No 17
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.83 E-value=1.7e-20 Score=125.94 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 180 (214)
T TIGR02673 129 HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180 (214)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999964
No 18
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.4e-20 Score=126.42 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus 122 ~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03259 122 GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173 (213)
T ss_pred hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999964
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.3e-21 Score=132.89 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++++|.+|||||+|||+||.+|+.+|+++||||||++||+..+..+.+++
T Consensus 130 ~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l 181 (235)
T COG1122 130 ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181 (235)
T ss_pred hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999954
No 20
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.82 E-value=2.1e-20 Score=125.30 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 128 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 128 HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999954
No 21
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.82 E-value=1.8e-20 Score=126.11 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 132 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 132 DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999954
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.82 E-value=1.6e-20 Score=136.02 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus 132 ~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 23
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.82 E-value=2.1e-20 Score=132.25 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||+||+++|+++||||||+|||+..+..+++++
T Consensus 116 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 167 (302)
T TIGR01188 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167 (302)
T ss_pred hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 24
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=1.2e-20 Score=133.78 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCC
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPG 73 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g 73 (79)
++++++||.+|||||+|||.+||||+.+|++++||||+++|||.++..+-+.+. ..+.+..+++|+
T Consensus 126 ~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD 195 (309)
T COG1125 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 (309)
T ss_pred HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 369999999999999999999999999999999999999999999998887532 233444444443
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=2.3e-20 Score=132.72 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=54.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
+..++++++|||||+||++||+||+++|+++||||||+|||+..+..++++ +..+.++|.|+++
T Consensus 130 ~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~------l~~l~~~g~till 193 (306)
T PRK13537 130 NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER------LRSLLARGKTILL 193 (306)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence 456889999999999999999999999999999999999999999999995 4444444555543
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.2e-20 Score=127.25 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 128 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 128 GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999954
No 27
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.9e-20 Score=134.74 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=57.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL 76 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~ 76 (79)
...+.||.+|||||+|||.||.|++.+|++||.||||++||...+.++++++. +.+....+.+|+.++
T Consensus 145 ~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v 216 (316)
T COG0444 145 RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV 216 (316)
T ss_pred HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 47899999999999999999999999999999999999999999999999653 234444445555443
No 28
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.82 E-value=3.5e-20 Score=124.95 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 133 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999954
No 29
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.82 E-value=3.3e-20 Score=131.34 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus 127 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 178 (303)
T TIGR01288 127 SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178 (303)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 30
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.7e-20 Score=125.07 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus 123 ~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l 174 (220)
T cd03293 123 GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174 (220)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999964
No 31
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4e-20 Score=132.68 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus 145 ~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL 196 (326)
T PRK11022 145 SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL 196 (326)
T ss_pred HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999964
No 32
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.82 E-value=4.8e-20 Score=123.53 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 127 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 178 (213)
T cd03262 127 DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178 (213)
T ss_pred hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999953
No 33
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.8e-20 Score=129.67 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 137 ~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l 188 (287)
T PRK13641 137 DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188 (287)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999953
No 34
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.4e-20 Score=125.66 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+++++
T Consensus 136 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 187 (241)
T cd03256 136 DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187 (241)
T ss_pred hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999954
No 35
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=3.5e-20 Score=124.14 Aligned_cols=52 Identities=33% Similarity=0.284 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus 118 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (208)
T cd03268 118 DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169 (208)
T ss_pred HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999854
No 36
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.3e-20 Score=132.50 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=48.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+|||+|||||+.+|++||+||||++||+..+..+.+++.
T Consensus 151 ~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~ 202 (330)
T PRK15093 151 AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLT 202 (330)
T ss_pred HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999643
No 37
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.7e-20 Score=134.41 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 126 ~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l 177 (356)
T PRK11650 126 PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI 177 (356)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999854
No 38
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.81 E-value=4.1e-20 Score=124.42 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 128 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 128 ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 39
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.81 E-value=4.5e-20 Score=132.82 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+++|.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus 153 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL 204 (331)
T PRK15079 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204 (331)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999954
No 40
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=2.1e-20 Score=131.06 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=54.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCC
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPG 73 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g 73 (79)
..++.+|.+|||||++|++||||++.+|+++++||||+||||.....+-+++. +-+.+..+.+|+
T Consensus 137 ~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD 205 (263)
T COG1127 137 AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205 (263)
T ss_pred hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC
Confidence 34789999999999999999999999999999999999999999998888643 234444445554
No 41
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.81 E-value=5.2e-20 Score=123.53 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 122 ~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 122 HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999954
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.2e-20 Score=124.38 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 123 ~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (220)
T cd03265 123 EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174 (220)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 43
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.5e-20 Score=126.20 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=56.1
Q ss_pred chhHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCce
Q psy1505 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIG 75 (79)
Q Consensus 6 ~~~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~ 75 (79)
.=++++|++|-.|||||+|||+|||||++.|+++++||||++|||+...++.++ +..+...|+|
T Consensus 130 rl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~i------ikel~~tgit 193 (242)
T COG4161 130 RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI------IKELAETGIT 193 (242)
T ss_pred ccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHH------HHHHHhcCce
Confidence 337899999999999999999999999999999999999999999999999994 4555444544
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.81 E-value=4.9e-20 Score=125.28 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++++
T Consensus 136 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 186 (236)
T cd03219 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186 (236)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999954
No 45
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=6.5e-20 Score=127.48 Aligned_cols=65 Identities=18% Similarity=0.445 Sum_probs=57.0
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC-Cceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP-GIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~-g~~~~~ 78 (79)
+++.++++++|||||||+++|||||+.+|++++|||||.||-|...++|++ .+..++++ |+||++
T Consensus 127 ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~------~i~~l~~~~g~tIlL 192 (237)
T COG0410 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE------AIKELRKEGGMTILL 192 (237)
T ss_pred HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHH------HHHHHHHcCCcEEEE
Confidence 578899999999999999999999999999999999999999999999999 45566543 555553
No 46
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.81 E-value=7.4e-20 Score=122.09 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 126 ~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 126 LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 47
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.9e-20 Score=131.60 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+++|.+|||||+|||+|||||+.+|++||+||||++||+..+..+++++
T Consensus 146 ~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL 197 (327)
T PRK11308 146 EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM 197 (327)
T ss_pred HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999964
No 48
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.81 E-value=6.2e-20 Score=123.89 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (228)
T cd03257 137 EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLL 188 (228)
T ss_pred hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999999954
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.81 E-value=6.5e-20 Score=124.39 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 125 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l 176 (232)
T cd03218 125 HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176 (232)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=5e-20 Score=130.79 Aligned_cols=61 Identities=21% Similarity=0.394 Sum_probs=52.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC-ceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG-IGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g-~~~~ 77 (79)
.++++++||+||||||.||.||+++|+++||||||+||||..+..++++ ++.+.++| .||+
T Consensus 130 ~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~------l~~l~~~g~~tvl 191 (293)
T COG1131 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL------LRELAKEGGVTIL 191 (293)
T ss_pred hCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHH------HHHHHhCCCcEEE
Confidence 3788999999999999999999999999999999999999999999995 45554443 4544
No 51
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.7e-20 Score=127.38 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus 128 ~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 128 HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 52
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.81 E-value=6.9e-20 Score=125.00 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus 137 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 188 (243)
T TIGR02315 137 DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188 (243)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999954
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.9e-20 Score=129.01 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus 136 ~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l 187 (287)
T PRK13637 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI 187 (287)
T ss_pred hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999953
No 54
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.9e-20 Score=127.89 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus 130 ~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (274)
T PRK13647 130 DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181 (274)
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999954
No 55
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=8.4e-20 Score=122.37 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 117 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 168 (201)
T cd03231 117 GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168 (201)
T ss_pred hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 56
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.4e-20 Score=130.32 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l 208 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF 208 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999953
No 57
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=6.8e-20 Score=132.39 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++++|||||+||++||+||+++|+++||||||+|||+..+..+++++
T Consensus 164 ~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l 215 (340)
T PRK13536 164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215 (340)
T ss_pred hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999954
No 58
>PRK10908 cell division protein FtsE; Provisional
Probab=99.81 E-value=9.1e-20 Score=123.33 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=48.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999854
No 59
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.81 E-value=8.4e-20 Score=123.75 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 138 ~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999954
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=6.5e-20 Score=125.36 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 128 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 179 (239)
T cd03296 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 179 (239)
T ss_pred hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999954
No 61
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.81 E-value=7.4e-20 Score=125.44 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 137 ~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 187 (250)
T PRK11264 137 KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187 (250)
T ss_pred hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999853
No 62
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8.1e-20 Score=122.53 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=48.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 120 ~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l 171 (210)
T cd03269 120 EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171 (210)
T ss_pred HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999953
No 63
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8.1e-20 Score=122.98 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999954
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.5e-20 Score=124.66 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 137 ~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (233)
T PRK11629 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188 (233)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999954
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.81 E-value=8e-20 Score=123.09 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus 124 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (222)
T cd03224 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175 (222)
T ss_pred hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999999954
No 66
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.81 E-value=1e-19 Score=121.46 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus 119 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (198)
T TIGR01189 119 GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170 (198)
T ss_pred HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 67
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.81 E-value=8.4e-20 Score=124.64 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus 106 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999954
No 68
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.80 E-value=8.2e-20 Score=131.36 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus 154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL 204 (330)
T PRK09473 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL 204 (330)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999954
No 69
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.80 E-value=1.2e-19 Score=119.81 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 89 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 140 (180)
T cd03214 89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140 (180)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999954
No 70
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=6.6e-20 Score=126.45 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=56.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
+.+++++.+||||+|+|++|||||+.+|++++||||++|+||.....+-. ++..+++.|+.|++
T Consensus 131 hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~------iI~~L~~rgiGvLI 194 (243)
T COG1137 131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR------IIKHLKDRGIGVLI 194 (243)
T ss_pred HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHH------HHHHHHhCCceEEE
Confidence 56889999999999999999999999999999999999999999999988 45566666666553
No 71
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=127.94 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||+|+.+|+++||||||++||+..+..+.+++
T Consensus 136 ~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l 187 (288)
T PRK13643 136 EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF 187 (288)
T ss_pred hhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999953
No 72
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.2e-19 Score=121.66 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 121 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 172 (204)
T PRK13538 121 GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172 (204)
T ss_pred HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.2e-19 Score=126.58 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 152 ~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l 203 (269)
T cd03294 152 GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203 (269)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999954
No 74
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=7.5e-20 Score=133.22 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 129 ~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l 180 (362)
T TIGR03258 129 DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180 (362)
T ss_pred chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 75
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=124.85 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L 196 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI 196 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 76
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.5e-19 Score=126.49 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=53.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++. +..+.++|.|++
T Consensus 128 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~------l~~l~~~g~til 190 (274)
T PRK13644 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER------IKKLHEKGKTIV 190 (274)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence 467889999999999999999999999999999999999999999999995 344444445544
No 77
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.80 E-value=9.6e-20 Score=132.89 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=49.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l 172 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999964
No 78
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-19 Score=121.54 Aligned_cols=52 Identities=13% Similarity=0.309 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 120 ~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l 171 (211)
T cd03298 120 GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171 (211)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 79
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.4e-19 Score=121.70 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++++|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 119 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 119 PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170 (207)
T ss_pred HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999954
No 80
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.3e-19 Score=123.88 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 133 ~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l 184 (242)
T PRK11124 133 PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 81
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.4e-19 Score=129.62 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L 219 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999954
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=131.07 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus 132 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 132 DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=1.5e-19 Score=123.42 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus 128 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 84
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.5e-19 Score=127.45 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 137 ~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L 188 (290)
T PRK13634 137 ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188 (290)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999953
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.6e-19 Score=126.63 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 132 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 132 DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999953
No 86
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-19 Score=123.06 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus 132 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 132 DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999953
No 87
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.6e-19 Score=124.50 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 130 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 181 (255)
T PRK11231 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181 (255)
T ss_pred HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999954
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.6e-19 Score=121.13 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++.
T Consensus 122 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 122 DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS 174 (211)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999643
No 89
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=1.7e-19 Score=122.87 Aligned_cols=52 Identities=19% Similarity=0.079 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 134 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l 185 (224)
T cd03220 134 DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL 185 (224)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999854
No 90
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.3e-19 Score=131.45 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus 128 ~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 128 GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999854
No 91
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.80 E-value=1.5e-19 Score=133.36 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=54.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
++.++++.+||||||||++|||||+++|+++||||||++||+..+..++++ +..+.++|.|++
T Consensus 131 ~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l------L~~l~~~g~TII 193 (402)
T PRK09536 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL------VRRLVDDGKTAV 193 (402)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence 567899999999999999999999999999999999999999999999994 444444455544
No 92
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.6e-20 Score=125.99 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=58.0
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+.+|++++++|.||||||+|||||+++|++++|||||+|||...+..+.+ ++..++..|.+++|
T Consensus 124 ~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d------fi~q~k~egr~viF 188 (245)
T COG4555 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD------FIKQLKNEGRAVIF 188 (245)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH------HHHHhhcCCcEEEE
Confidence 468899999999999999999999999999999999999999999999999 45666666666665
No 93
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.6e-19 Score=123.07 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=48.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 129 ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999954
No 94
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=131.94 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 125 ~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L 176 (369)
T PRK11000 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176 (369)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999998854
No 95
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.80 E-value=1.4e-19 Score=131.23 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 128 ~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L 179 (353)
T PRK10851 128 HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179 (353)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999854
No 96
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.8e-19 Score=125.84 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 138 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (280)
T PRK13649 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188 (280)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999954
No 97
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.79 E-value=1.5e-19 Score=125.89 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 135 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 135 GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999954
No 98
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=1e-19 Score=138.11 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=53.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCce
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIG 75 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~ 75 (79)
++||.+||||||||+.||+||+.+|++||+||||++||+..+.+|++++. +.++...+.+|+.+
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999643 23344444444443
No 99
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=125.06 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 134 ~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 134 EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999954
No 100
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.79 E-value=2e-19 Score=122.46 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=47.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus 132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 181 (237)
T cd03252 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181 (237)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999964
No 101
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=125.69 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 129 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 129 GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999953
No 102
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.79 E-value=2.6e-19 Score=121.08 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=47.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 143 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 192 (224)
T TIGR02324 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192 (224)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999953
No 103
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.79 E-value=2.2e-19 Score=122.06 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 105 ~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999954
No 104
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.9e-19 Score=123.20 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 128 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999954
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.4e-19 Score=125.91 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus 133 ~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999953
No 106
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.79 E-value=2.7e-19 Score=121.93 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=46.6
Q ss_pred HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++. +|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 136 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 187 (243)
T TIGR01978 136 FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187 (243)
T ss_pred hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 4566776 59999999999999999999999999999999999999999954
No 107
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.79 E-value=9.7e-20 Score=132.22 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=49.7
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++++|.+|||||||||+|||||+.+|++++||||+++||+..+..+...+
T Consensus 124 ~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei 176 (338)
T COG3839 124 EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEI 176 (338)
T ss_pred hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999887753
No 108
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=2.1e-19 Score=133.49 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+||+||+.+|+++||||||++||+..+..+.+++
T Consensus 127 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 178 (490)
T PRK10938 127 ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL 178 (490)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999964
No 109
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.6e-19 Score=125.93 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 137 ~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l 188 (286)
T PRK13646 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLL 188 (286)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999953
No 110
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=122.46 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999884
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.79 E-value=2.6e-19 Score=122.15 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 125 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 175 (236)
T TIGR03864 125 RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175 (236)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999954
No 112
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.79 E-value=2.3e-19 Score=122.19 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999854
No 113
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.79 E-value=2.8e-19 Score=123.56 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+.....+.+.+
T Consensus 144 ~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 194 (258)
T PRK11701 144 RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999953
No 114
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.6e-19 Score=125.78 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 142 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 193 (289)
T PRK13645 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193 (289)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999853
No 115
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.79 E-value=2.8e-19 Score=123.43 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=46.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.
T Consensus 147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 194 (257)
T PRK10619 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194 (257)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999995
No 116
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=122.22 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 123 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999954
No 117
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.79 E-value=2.3e-19 Score=128.48 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 92 ~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 92 EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999964
No 118
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.79 E-value=2.3e-19 Score=131.27 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus 136 ~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 136 EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999998854
No 119
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.1e-19 Score=123.78 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 120 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 171 (255)
T PRK11248 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171 (255)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999964
No 120
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.79 E-value=2.7e-19 Score=129.40 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 123 ~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 123 HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 121
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.4e-19 Score=123.77 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus 139 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 190 (265)
T PRK10575 139 PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 (265)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999998854
No 122
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.79 E-value=3.5e-19 Score=119.97 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+||+||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 120 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 120 DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171 (213)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999954
No 123
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=3.9e-19 Score=121.60 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++. +|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l 188 (248)
T PRK09580 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGV 188 (248)
T ss_pred hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3455564 79999999999999999999999999999999999999998853
No 124
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.79 E-value=2e-19 Score=130.43 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus 126 ~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 126 GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999854
No 125
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=2.3e-19 Score=134.51 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l 199 (529)
T PRK15134 149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL 199 (529)
T ss_pred HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999964
No 126
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-19 Score=122.44 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus 143 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 193 (254)
T PRK14273 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI 193 (254)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999999999954
No 127
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.7e-19 Score=122.34 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+++
T Consensus 142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 192 (253)
T PRK14242 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELI 192 (253)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999964
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.4e-19 Score=125.05 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 132 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 132 DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999953
No 129
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=3e-19 Score=122.80 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus 140 ~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l 191 (253)
T TIGR02323 140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191 (253)
T ss_pred hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 3668899999999999999999999999999999999999999999999954
No 130
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.79 E-value=3.8e-19 Score=122.08 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus 136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 187 (247)
T TIGR00972 136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187 (247)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999964
No 131
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=3.6e-19 Score=119.10 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=48.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 119 ~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l 170 (200)
T PRK13540 119 HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170 (200)
T ss_pred hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 3557888999999999999999999999999999999999999999999954
No 132
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=3.2e-19 Score=121.02 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 174 (230)
T TIGR03410 123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174 (230)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 133
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.1e-19 Score=134.03 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++.+
T Consensus 389 ~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 439 (501)
T PRK11288 389 SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI 439 (501)
T ss_pred CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999953
No 134
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.1e-19 Score=134.14 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++++|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 452 (510)
T PRK09700 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452 (510)
T ss_pred CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999954
No 135
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.9e-19 Score=121.08 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 121 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l 172 (232)
T PRK10771 121 DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV 172 (232)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 136
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.2e-19 Score=134.11 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++++
T Consensus 398 ~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 448 (506)
T PRK13549 398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448 (506)
T ss_pred CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999953
No 137
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.1e-19 Score=129.11 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus 120 ~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 120 PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999854
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.2e-19 Score=124.26 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus 129 ~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l 180 (277)
T PRK13652 129 ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180 (277)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999954
No 139
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.9e-19 Score=124.55 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus 136 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999953
No 140
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.2e-19 Score=136.56 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=48.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+.+++
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999954
No 141
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.78 E-value=3.5e-19 Score=123.26 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 195 (262)
T PRK09984 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL 195 (262)
T ss_pred HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 142
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=3.8e-19 Score=123.28 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||+||+.+|+++||||||++||+..+..+.+++
T Consensus 107 ~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999998854
No 143
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.7e-19 Score=121.78 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 139 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 189 (250)
T PRK14245 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189 (250)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999964
No 144
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=2.1e-19 Score=136.46 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=59.0
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL 76 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~ 76 (79)
.+++++||.+||||||||++|||||+.+|+++++||||++||+..+..+.+++. +.++...+.+|+.++
T Consensus 420 ~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v 492 (539)
T COG1123 420 PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492 (539)
T ss_pred HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 358999999999999999999999999999999999999999999999999753 335555556666544
No 145
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.78 E-value=5.4e-19 Score=119.95 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 135 ~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l 186 (226)
T cd03234 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186 (226)
T ss_pred hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999999999964
No 146
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.78 E-value=4.9e-19 Score=121.49 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=46.7
Q ss_pred HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++. +|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus 143 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 194 (252)
T CHL00131 143 FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194 (252)
T ss_pred hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4567776 59999999999999999999999999999999999999999954
No 147
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.78 E-value=5e-19 Score=122.14 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (256)
T TIGR03873 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV 180 (256)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999954
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.6e-19 Score=121.65 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+++.
T Consensus 139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 190 (250)
T PRK14247 139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190 (250)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999653
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.78 E-value=3.7e-19 Score=120.42 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|++++|||||+|||+..+..+.+++
T Consensus 116 ~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 116 NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167 (223)
T ss_pred HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999954
No 150
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=5.4e-19 Score=119.70 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=46.5
Q ss_pred hccC--cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKK--KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~--~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.++. +.+|||||+||++||||++.+|+++||||||++||+..+..+++.+.
T Consensus 133 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 185 (227)
T cd03260 133 VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185 (227)
T ss_pred HhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 3455 59999999999999999999999999999999999999999999643
No 151
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=4.7e-19 Score=119.37 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus 125 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 125 DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999653
No 152
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.2e-19 Score=129.87 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=48.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
++.+++|.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.
T Consensus 141 ~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 141 EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998874
No 153
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=3.1e-19 Score=121.99 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=49.6
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++.++.|.+|||||||||++||+|+.+-+|++||||+++|||..+.++..+
T Consensus 120 ~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 120 AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999885
No 154
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.78 E-value=4.1e-19 Score=123.36 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 143 ~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l 193 (265)
T TIGR02769 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193 (265)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999854
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.2e-19 Score=133.16 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 138 ~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (510)
T PRK09700 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188 (510)
T ss_pred CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999953
No 156
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.6e-19 Score=122.72 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 135 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L 186 (265)
T PRK10253 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186 (265)
T ss_pred HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999954
No 157
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=4.7e-19 Score=120.97 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 135 ~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 186 (242)
T TIGR03411 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186 (242)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence 3557889999999999999999999999999999999999999999999954
No 158
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.3e-19 Score=122.27 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus 147 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 197 (258)
T PRK14268 147 RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI 197 (258)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999954
No 159
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=5e-19 Score=123.36 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L 176 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998864
No 160
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=2.6e-19 Score=129.90 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=49.2
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++.++||.+|||||||||.|||||+.+|+|++||||+|+|||-.+.++-+.
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999888775
No 161
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.78 E-value=4.8e-19 Score=123.27 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=48.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 141 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred HHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999954
No 162
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=5.7e-19 Score=119.30 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+|||||+||++|||+++.+|++++|||||++||+..+..+.+++
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (214)
T PRK13543 129 GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180 (214)
T ss_pred hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999954
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.2e-19 Score=123.41 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 132 ~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999953
No 164
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.78 E-value=5.8e-19 Score=121.87 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L 183 (254)
T PRK10418 133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183 (254)
T ss_pred hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999853
No 165
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=4.1e-19 Score=132.81 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=48.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999964
No 166
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3e-19 Score=128.76 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=49.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+++||.+|||||||||++||||+.+|++|+||||+++||+..+.++..++
T Consensus 129 ~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 129 GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999974
No 167
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.3e-19 Score=132.61 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++++
T Consensus 384 ~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999954
No 168
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.78 E-value=5.7e-19 Score=122.47 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 112 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999854
No 169
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.4e-19 Score=119.79 Aligned_cols=50 Identities=28% Similarity=0.357 Sum_probs=46.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 131 ~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l 180 (236)
T cd03253 131 VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180 (236)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999954
No 170
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=5.2e-19 Score=132.27 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 211 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998853
No 171
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=5.2e-19 Score=125.24 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||+||+++|+++||||||+|||+..+..+++.+
T Consensus 125 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l 176 (301)
T TIGR03522 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI 176 (301)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999954
No 172
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.78 E-value=6.7e-19 Score=120.59 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=48.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||+|++.+|+++||||||++||+..+..+.+++
T Consensus 145 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 196 (236)
T cd03267 145 ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196 (236)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999964
No 173
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.7e-19 Score=130.20 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L 207 (400)
T PRK10070 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL 207 (400)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999964
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.7e-19 Score=135.15 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++++
T Consensus 455 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999964
No 175
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.1e-19 Score=120.42 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 140 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 190 (251)
T PRK14249 140 NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM 190 (251)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998854
No 176
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.77 E-value=7.5e-19 Score=119.73 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=46.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 133 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred eccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999954
No 177
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=5.2e-19 Score=132.39 Aligned_cols=51 Identities=14% Similarity=0.369 Sum_probs=48.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 133 ~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999954
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.1e-19 Score=121.93 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 156 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 207 (268)
T PRK14248 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI 207 (268)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999964
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=4.4e-19 Score=132.31 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 134 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (501)
T PRK10762 134 SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184 (501)
T ss_pred CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999853
No 180
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=4.4e-19 Score=132.29 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+++
T Consensus 388 ~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 438 (501)
T PRK10762 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLI 438 (501)
T ss_pred CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999954
No 181
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.77 E-value=7.9e-19 Score=118.27 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=44.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+.
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999653
No 182
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.2e-19 Score=118.79 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=46.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 133 ~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999954
No 183
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=8.5e-19 Score=119.22 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 130 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (225)
T PRK10247 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180 (225)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999853
No 184
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=5.5e-19 Score=131.48 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=47.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||||||+||||++.+|+++||||||++||+..+..+++++
T Consensus 397 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 446 (500)
T TIGR02633 397 PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446 (500)
T ss_pred ccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999853
No 185
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=9.4e-19 Score=121.32 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=48.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVY------KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~------~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+ .+|+++||||||++||+..+..+.+++
T Consensus 126 ~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (258)
T PRK13548 126 HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLA 183 (258)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999 599999999999999999999999853
No 186
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-18 Score=119.98 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 139 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14240 139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189 (250)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999998854
No 187
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=8.1e-19 Score=120.72 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 138 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 189 (252)
T TIGR03005 138 DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVI 189 (252)
T ss_pred hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999854
No 188
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=8.9e-19 Score=121.91 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus 134 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 134 ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.1e-19 Score=132.09 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 136 ~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (506)
T PRK13549 136 NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186 (506)
T ss_pred CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999954
No 190
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.77 E-value=2e-19 Score=131.09 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=49.2
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+++++++|.+|||||+|||+|||||+.+|+++|||||.++||...+.++...
T Consensus 127 ~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E 178 (352)
T COG3842 127 EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178 (352)
T ss_pred hhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999988775
No 191
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.4e-19 Score=131.43 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 127 ~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 177 (491)
T PRK10982 127 DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177 (491)
T ss_pred CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999953
No 192
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.77 E-value=7.1e-19 Score=131.90 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=48.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+++++
T Consensus 418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 468 (529)
T PRK15134 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL 468 (529)
T ss_pred HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999964
No 193
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=6.4e-19 Score=131.15 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=46.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 136 ~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (500)
T TIGR02633 136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184 (500)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999953
No 194
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.9e-19 Score=121.92 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus 134 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l 185 (271)
T PRK13632 134 DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185 (271)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999964
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=4.8e-19 Score=132.60 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+||||++.+|++|||||||+|||+..+..+.+++
T Consensus 396 ~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l 446 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446 (510)
T ss_pred CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999954
No 196
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=121.78 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus 147 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 197 (269)
T PRK14259 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM 197 (269)
T ss_pred hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999964
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1e-18 Score=122.63 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus 135 ~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 135 DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999954
No 198
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.77 E-value=1.1e-18 Score=118.20 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+.++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+.
T Consensus 142 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 142 TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999643
No 199
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=120.61 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=48.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus 149 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 200 (260)
T PRK10744 149 KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200 (260)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999998643
No 200
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=121.28 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 206 (267)
T PRK14235 156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI 206 (267)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999964
No 201
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.9e-19 Score=118.94 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=47.1
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+||+||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 132 ~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 181 (234)
T cd03251 132 IGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181 (234)
T ss_pred eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999964
No 202
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=1.2e-18 Score=116.16 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=54.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g~ 74 (79)
+..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+. ..+.+..+.+|..
T Consensus 115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 183 (195)
T PRK13541 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183 (195)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 45688899999999999999999999999999999999999999999998643 2334444444433
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.77 E-value=8e-19 Score=128.88 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 156 ~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L 207 (382)
T TIGR03415 156 QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDEL 207 (382)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999964
No 204
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=1.3e-18 Score=116.21 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=47.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~--p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+||+||+||++||||++.+ |+++||||||++||+.....+.+.+
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l 132 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 6789999999999999999999999 9999999999999999999999953
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=119.53 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=48.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++++.
T Consensus 141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 192 (252)
T PRK14239 141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL 192 (252)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999643
No 206
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.2e-18 Score=119.20 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|++++|||||+|||+..+..+++.+
T Consensus 121 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 172 (235)
T cd03299 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172 (235)
T ss_pred hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999953
No 207
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7e-19 Score=131.23 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 133 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (501)
T PRK11288 133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183 (501)
T ss_pred CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999954
No 208
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.2e-18 Score=114.51 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l 139 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999954
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.3e-18 Score=120.22 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus 141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 191 (258)
T PRK14241 141 RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI 191 (258)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999998854
No 210
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.77 E-value=1.2e-18 Score=117.86 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus 133 ~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999853
No 211
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=119.81 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 192 (253)
T PRK14267 142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192 (253)
T ss_pred hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999964
No 212
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=121.38 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++.
T Consensus 153 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 205 (274)
T PRK14265 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205 (274)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999653
No 213
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=1.4e-18 Score=116.51 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=44.5
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L 147 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI 147 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 445799999999999999999999999999999999999999999953
No 214
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=1.6e-18 Score=119.58 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=47.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~-------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++. +|+++||||||+|||+..+..+.+++
T Consensus 118 ~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L 176 (248)
T PRK03695 118 DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176 (248)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 45688999999999999999999997 67999999999999999999999953
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=1.6e-18 Score=113.36 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+||+||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 125 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 349999999999999999999999999999999999999999954
No 216
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.7e-18 Score=118.83 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 191 (252)
T PRK14272 141 RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191 (252)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999954
No 217
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.8e-18 Score=118.74 Aligned_cols=51 Identities=25% Similarity=0.211 Sum_probs=47.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 185 (246)
T PRK14269 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185 (246)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999964
No 218
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=1.8e-18 Score=118.35 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||+++.+| +++||||||++||+..+..+.+.+
T Consensus 130 ~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l 182 (226)
T cd03270 130 TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETL 182 (226)
T ss_pred cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 468899999999999999999999998 599999999999999999999954
No 219
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.9e-18 Score=118.79 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 141 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 191 (252)
T PRK14255 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191 (252)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999964
No 220
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.4e-18 Score=116.75 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=47.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 161 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI 161 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999954
No 221
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=118.32 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 188 (249)
T PRK14253 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188 (249)
T ss_pred HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999954
No 222
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.7e-18 Score=119.01 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=46.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 143 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 192 (251)
T PRK14244 143 LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192 (251)
T ss_pred hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999998854
No 223
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.9e-18 Score=113.56 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 138 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999954
No 224
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=6.9e-19 Score=131.06 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=50.4
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+...+.||.+|||||||||.||+||+++|+++|.||||++||...+.++++++
T Consensus 148 ~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll 200 (534)
T COG4172 148 EKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLL 200 (534)
T ss_pred hhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999964
No 225
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=9e-19 Score=123.82 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=57.7
Q ss_pred hhHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCce
Q psy1505 7 KKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIG 75 (79)
Q Consensus 7 ~~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~ 75 (79)
.++.++++|.+|||||+||+.|||||+.+|+++++|||+++||...+.++.+++. +.++...+.+|+.+
T Consensus 99 ~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 99 PEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred CHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 4678999999999999999999999999999999999999999999999999653 22444444455443
No 226
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2e-18 Score=119.27 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+|||||+||++|||+++.+|+++||||||+|||+..+..+.+.+
T Consensus 148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 198 (259)
T PRK14274 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198 (259)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999854
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.4e-18 Score=119.60 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=48.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 144 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 194 (264)
T PRK14243 144 KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194 (264)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999954
No 228
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.9e-18 Score=117.79 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.76 E-value=2.2e-18 Score=120.15 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 144 ~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 194 (268)
T PRK10419 144 VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLL 194 (268)
T ss_pred HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999853
No 230
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=1.9e-18 Score=132.21 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l 496 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI 496 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999954
No 231
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=1.9e-18 Score=114.27 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
||+||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 147 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI 147 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999954
No 232
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.6e-18 Score=119.96 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=48.1
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus 160 ~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 210 (271)
T PRK14238 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV 210 (271)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999954
No 233
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.8e-18 Score=118.01 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=48.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+.
T Consensus 140 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~ 191 (251)
T PRK14270 140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191 (251)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999998643
No 234
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=2.6e-18 Score=120.24 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=48.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+||+||+||++||+|++.+|+++||||||+|||+..+..+.+.+
T Consensus 135 ~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L 186 (264)
T PRK13546 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186 (264)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999853
No 235
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=2.8e-18 Score=115.74 Aligned_cols=47 Identities=30% Similarity=0.608 Sum_probs=44.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+.++.+|||||+||++||||++.+|+++||||||++||+..+..+++
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999998877
No 236
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.8e-18 Score=120.83 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+.+.
T Consensus 173 ~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~ 224 (285)
T PRK14254 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224 (285)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999988653
No 237
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.6e-18 Score=118.01 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=48.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus 140 ~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 191 (251)
T PRK14251 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM 191 (251)
T ss_pred HhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999643
No 238
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.7e-18 Score=120.87 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+.
T Consensus 174 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~ 226 (286)
T PRK14275 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ 226 (286)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999643
No 239
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.8e-18 Score=117.77 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14262 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL 189 (250)
T ss_pred HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999964
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.9e-18 Score=118.69 Aligned_cols=52 Identities=23% Similarity=0.198 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 142 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 193 (259)
T PRK14260 142 DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELI 193 (259)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999954
No 241
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.9e-18 Score=117.96 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=47.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+..+.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 141 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 191 (252)
T PRK14256 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191 (252)
T ss_pred HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999998854
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.4e-18 Score=117.34 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=47.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 139 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 189 (250)
T PRK14266 139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLI 189 (250)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999954
No 243
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=3.5e-18 Score=114.55 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=47.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++.
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 169 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIR 169 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999998643
No 244
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=3.1e-18 Score=112.83 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l 141 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999954
No 245
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.3e-18 Score=118.62 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus 143 ~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l 193 (261)
T PRK14258 143 KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193 (261)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999854
No 246
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=3.5e-18 Score=114.31 Aligned_cols=49 Identities=51% Similarity=0.819 Sum_probs=45.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999988874
No 247
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.75 E-value=1.8e-18 Score=128.52 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=49.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+++.
T Consensus 394 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~ 445 (490)
T PRK10938 394 TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVD 445 (490)
T ss_pred hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999653
No 248
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.3e-18 Score=119.35 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 161 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L 211 (272)
T PRK14236 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELI 211 (272)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999864
No 249
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.75 E-value=2.9e-18 Score=112.43 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=50.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g 73 (79)
++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.+.+.+..+.+|.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~ 147 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 578999999999999999999999999999999999999999999765434344444554
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.75 E-value=3.5e-18 Score=114.26 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 154 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL 154 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999954
No 251
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=3.5e-18 Score=116.93 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+||+||+||++|||+++.+|++++|||||+|||+..+..+.+.+
T Consensus 122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 122 GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999954
No 252
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=2.2e-18 Score=117.19 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+..++||++||||++|||+||||++..|++++.||||.+||......+.++
T Consensus 138 ~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 138 KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999996
No 253
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.8e-18 Score=117.45 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=47.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l 192 (253)
T PRK14261 143 LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLI 192 (253)
T ss_pred hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999998864
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=4.1e-18 Score=114.85 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=47.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+.++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus 134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999653
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.8e-18 Score=113.80 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l 151 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999954
No 256
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.3e-18 Score=118.04 Aligned_cols=51 Identities=27% Similarity=0.272 Sum_probs=48.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus 156 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 206 (267)
T PRK14237 156 DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206 (267)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999954
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.2e-18 Score=112.31 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
|||||+||++||||++.+|++++|||||+|||+..+..+.+++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l 143 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999954
No 258
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=4.6e-18 Score=119.32 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+ .+|+++||||||++||+..+..+.+++
T Consensus 137 ~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 3467899999999999999999999 499999999999999999999999954
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.9e-18 Score=117.10 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..+.++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+.
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~ 193 (261)
T PRK14263 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193 (261)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999643
No 260
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=6.9e-18 Score=128.49 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus 135 ~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL 186 (549)
T PRK13545 135 KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186 (549)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999854
No 261
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=8.2e-18 Score=121.05 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=47.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+|||||+||++||||++.+|+++||||||++||+.....+.+.+
T Consensus 218 ~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i 268 (329)
T PRK14257 218 DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268 (329)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999988854
No 262
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=9.4e-18 Score=119.13 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=48.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++.
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~ 244 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE 244 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999653
No 263
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.73 E-value=3.7e-18 Score=127.22 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=50.5
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..-.++||.++|||||||++||||++-+|++++|||||++||-..+.++.+++.
T Consensus 417 p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 417 PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999643
No 264
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=9.8e-18 Score=117.54 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=47.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++.+.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus 156 ~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L 206 (276)
T PRK14271 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206 (276)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999854
No 265
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=9e-18 Score=117.54 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---h-cCcchhhhcCCceee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---S-GGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~-~~~~~~l~~~g~~~~ 77 (79)
++++.++++||+||+++|+|||||+.+|++|+||||.+|+.+.+..++.+.+. . .+....+.+|++.++
T Consensus 141 ~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 141 ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 67899999999999999999999999999999999999999999999999543 1 224444445544433
No 266
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=109.65 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
||+||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l 139 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999964
No 267
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.5e-18 Score=127.60 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=54.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
++++.+|||||+|||+||+||+.+|+++||||||++||+..+..+.+++.+.+.+..+.+|..
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~ 212 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDR 212 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 567899999999999999999999999999999999999999999997654455555556554
No 268
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=1.3e-17 Score=116.37 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+||+||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus 131 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l 182 (255)
T cd03236 131 HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182 (255)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999888854
No 269
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.6e-17 Score=115.40 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=47.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+||+||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus 146 ~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l 196 (257)
T PRK14246 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196 (257)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999864
No 270
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-17 Score=125.48 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.+.+.+..+.+|+.
T Consensus 430 ~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~ 495 (530)
T PRK15064 430 DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDR 495 (530)
T ss_pred hHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456899999999999999999999999999999999999999999999997654333444455543
No 271
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.8e-17 Score=114.99 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=47.7
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++.+.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus 154 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 204 (265)
T PRK14252 154 RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204 (265)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999954
No 272
>PRK13409 putative ATPase RIL; Provisional
Probab=99.72 E-value=1.4e-17 Score=127.44 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+||+|++.+|+++||||||++||+..+..+.+++
T Consensus 204 ~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i 255 (590)
T PRK13409 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255 (590)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999954
No 273
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.71 E-value=9.6e-18 Score=126.61 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=48.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP 72 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~ 72 (79)
....||||||||++||||++.+|+++||||||++||+++...+.+.+. ..+.+..+.+|
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 345799999999999999999999999999999999999999998553 22344444444
No 274
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.71 E-value=1.8e-17 Score=124.54 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=45.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+....+||||||||++||||++.+|+++||||||++||+.....+.+.+
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l 497 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 497 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999998854
No 275
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8e-18 Score=129.34 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=55.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
..++++.+|||||+|||+||++|+.+|++|||||||++||+..+..+.+++...+....+++|+.
T Consensus 142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~ 206 (638)
T PRK10636 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDR 206 (638)
T ss_pred hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45889999999999999999999999999999999999999999999887654333444556654
No 276
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=2.5e-17 Score=110.09 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
|||||+||++||||++.+|++++|||||++||+..+..+.+++
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l 114 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI 114 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
No 277
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.71 E-value=2.7e-17 Score=113.86 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=45.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus 151 ~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 199 (257)
T cd03288 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV 199 (257)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 4566899999999999999999999999999999999999999998854
No 278
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.71 E-value=2.3e-17 Score=123.26 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...||||||||++||||++.+|+++||||||++||++....+.+.+
T Consensus 468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l 513 (529)
T TIGR02868 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999954
No 279
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=1.1e-17 Score=126.41 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=53.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
.++++.+|||||||||+||||++.+|+++||||||++||+..+..+.+++.+...+..+.+|..
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~ 220 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDR 220 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4789999999999999999999999999999999999999999999997653333344455543
No 280
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=9.5e-18 Score=120.40 Aligned_cols=65 Identities=14% Similarity=0.338 Sum_probs=55.3
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC-Cceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP-GIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~-g~~~~~ 78 (79)
.+..+++|.+||||++|||+|+|||...|++++||||.++||..-..+++- ++..+.++ ++.++|
T Consensus 119 ~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp------ylERL~~e~~IPIlY 184 (352)
T COG4148 119 EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP------YLERLRDEINIPILY 184 (352)
T ss_pred HHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH------HHHHHHHhcCCCEEE
Confidence 467899999999999999999999999999999999999999999999988 44555433 555443
No 281
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=1.3e-17 Score=127.95 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=53.6
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++..-.....+++|+.
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~ 213 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDR 213 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 688999999999999999999999999999999999999999999997653333444555553
No 282
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.70 E-value=3.8e-17 Score=114.98 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=47.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~---p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.+
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L 215 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL 215 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999996 7999999999999999999999954
No 283
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.70 E-value=1.7e-17 Score=127.79 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=51.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
....||||||||++||||++.+|+++||||||++||+.....+.+.+...+.+..+.+|..
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl 672 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL 672 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3467999999999999999999999999999999999999999997665555555555543
No 284
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.1e-17 Score=115.59 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=49.6
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++.++++.+||||||||+.|||||+.+|++++||||+++||.-.++.+-+++
T Consensus 123 ~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelL 175 (259)
T COG4525 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175 (259)
T ss_pred ccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999888864
No 285
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.70 E-value=1.6e-17 Score=129.58 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=51.9
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI 74 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~ 74 (79)
.....||||||||++||||++++|+++||||||++||+.....+.+.+. ..+.+..+.+|..
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4456899999999999999999999999999999999999999999765 3345555555543
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=1.5e-17 Score=125.54 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=54.0
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
.++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++.+.+.+..+.+|+.
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~ 218 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDR 218 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4788999999999999999999999999999999999999999999997654333444455543
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=3e-17 Score=123.91 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=54.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++.+..-+..+.+|+.
T Consensus 436 ~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~ 500 (552)
T TIGR03719 436 DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDR 500 (552)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 45789999999999999999999999999999999999999999999997654222334455543
No 288
>PLN03211 ABC transporter G-25; Provisional
Probab=99.70 E-value=2.9e-17 Score=126.95 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=45.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.+||||||||++||++|+.+|++++|||||+|||+..+..+.+.+
T Consensus 201 ~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L 249 (659)
T PLN03211 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249 (659)
T ss_pred CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999999953
No 289
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-17 Score=126.92 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
..++++++|||||+|||+||++++.+|+++||||||++||+..+..+.+.+.+-+-+..+++|+.
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~ 487 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDR 487 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 56789999999999999999999999999999999999999999999997653322444556554
No 290
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=4.3e-17 Score=123.28 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=54.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+++.+..-...+.+|+.
T Consensus 438 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~ 502 (556)
T PRK11819 438 DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDR 502 (556)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45889999999999999999999999999999999999999999999997653211234455543
No 291
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.69 E-value=5.2e-17 Score=137.02 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+++++++|||||||||+||+||+.+|++++|||||+|||+..++.+++.+
T Consensus 2062 ~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257 2062 LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 292
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.69 E-value=3.5e-17 Score=125.77 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=50.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g 73 (79)
....||||||||++||||++.+|+++||||||++||+.+...+.+.+...+.+..+.+|.
T Consensus 585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr 644 (686)
T TIGR03797 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHR 644 (686)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecC
Confidence 346799999999999999999999999999999999999999998765434444444553
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.69 E-value=3.1e-17 Score=125.79 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=55.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+..++++++|||||||||+||++++.+|++|||||||++||+..+..+.+.+...+.+..+++|+.
T Consensus 432 ~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~ 497 (635)
T PRK11147 432 KRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497 (635)
T ss_pred HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence 356889999999999999999999999999999999999999999999887654333445556654
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.69 E-value=3.8e-17 Score=123.14 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=48.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG 73 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g 73 (79)
..+||||||||++||||++.+|+++||||||++||+.+...+++.+.+ .+.+..+.+|.
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr 538 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 356999999999999999999999999999999999999999986542 33444444443
No 295
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.68 E-value=8.9e-17 Score=113.33 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHhccCcCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKK-----------KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~-----------LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
++.+++|.. |||||+||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus 119 ~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~ 182 (275)
T cd03289 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182 (275)
T ss_pred HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 455666665 99999999999999999999999999999999999999988643
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.68 E-value=8.4e-17 Score=122.27 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=51.1
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
.+.....||||||||++|||||+.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~ 529 (585)
T TIGR01192 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR 529 (585)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 345567899999999999999999999999999999999999999988653 223444444443
No 297
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.68 E-value=3.7e-17 Score=122.67 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG 73 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g 73 (79)
..||||||||++||||++.+|++++|||||++||+.+...+.+.+.+ .+.+..+.+|.
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 46999999999999999999999999999999999999999886542 23444444553
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.68 E-value=7.9e-17 Score=120.39 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=49.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g 73 (79)
...+||||||||++||||++.+|+++||||||++||+.....+.+.+.+ .+.+..+.+|.
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 516 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHR 516 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4568999999999999999999999999999999999999999986542 33444444443
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.68 E-value=8.8e-17 Score=103.50 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=47.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP 72 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~ 72 (79)
+.+||+||+||++||||++.+|++++|||||++||+..+..+.+.+.+.+.+..+.+|
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th 125 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSH 125 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3449999999999999999999999999999999999999999975433333333444
No 300
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.68 E-value=4.8e-17 Score=125.45 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+.+||||||||++||||++++|+++||||||++||+.....+.+.+.+.+.+..+.+|..
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~ 639 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCch
Confidence 479999999999999999999999999999999999999999997665455555555543
No 301
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.68 E-value=1.1e-16 Score=121.02 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE 512 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 67999999999999999999999999999999999999998774
No 302
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=5.3e-17 Score=126.60 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=56.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+..++++.+|||||+|||+||++|+.+|+++||||||++||+..+..+.+++...+.+..+.+|+.
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~ 401 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAR 401 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 346789999999999999999999999999999999999999999999997664444455555554
No 303
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=112.36 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=49.8
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++..+||-|||||+-|||||+.+|.++|||||++|||...+..+.+.+
T Consensus 162 ~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l 214 (257)
T COG1119 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214 (257)
T ss_pred hhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999888853
No 304
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=1.6e-16 Score=112.41 Aligned_cols=47 Identities=32% Similarity=0.592 Sum_probs=43.9
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++.+|||||+||++|||+++.+|+++||||||++||+..+..+.+.
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999988874
No 305
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.67 E-value=1.3e-16 Score=120.21 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+|||||+||++||||++.+|+++||||||++||++....+.+.+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999887753
No 306
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.67 E-value=1.4e-16 Score=120.54 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=45.0
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....+||||||||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus 447 ~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999998653
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=7.5e-17 Score=109.39 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++||||++.+|+++|||||++++|+..+..+.+.+
T Consensus 96 ~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 96 QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999888854
No 308
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.67 E-value=8.1e-17 Score=121.86 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=49.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g 73 (79)
....|||||+||++||||++++|+++||||||++||+.....+++.+.. .+.+..+.+|.
T Consensus 468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr 529 (588)
T PRK13657 468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR 529 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3456999999999999999999999999999999999999999886542 23444444443
No 309
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.2e-16 Score=101.91 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+||+||+||++||++++.+|++++|||||++||+..+..+.+.+
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999854
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.67 E-value=9.5e-17 Score=123.51 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=49.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
....||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 598 ~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHr 659 (694)
T TIGR03375 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 345799999999999999999999999999999999999999988654 223444444443
No 311
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.67 E-value=2.7e-16 Score=106.42 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=47.9
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++.++++.+||+||+||++||+|++. +|+++||||||++||+.....+.+.+
T Consensus 114 ~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l 176 (213)
T cd03279 114 DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL 176 (213)
T ss_pred HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 467789999999999999999999985 57899999999999999999998853
No 312
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.4e-16 Score=120.42 Aligned_cols=62 Identities=19% Similarity=0.460 Sum_probs=58.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+.++++||.||||.|+||||+..+++++||||||++|+..+.+.+++ +++.+.++|++++|
T Consensus 139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~------~ir~Lk~~Gv~ii~ 200 (500)
T COG1129 139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD------LIRRLKAQGVAIIY 200 (500)
T ss_pred hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH------HHHHHHhCCCEEEE
Confidence 688999999999999999999999999999999999999999999999 67888888888876
No 313
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=9.1e-17 Score=125.31 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=54.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
..++++.+|||||+|||+|||+++.+|+++||||||++||+..+..+.+.+...+-+..+.+|+.
T Consensus 620 ~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~ 684 (718)
T PLN03073 620 LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDE 684 (718)
T ss_pred HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 56789999999999999999999999999999999999999999999886553212344455543
No 314
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.66 E-value=1.7e-16 Score=122.28 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=44.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....||||||||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus 608 ~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999988654
No 315
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.66 E-value=1.7e-16 Score=106.93 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=47.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++++.+||+||+||++||++++ .+|++++|||||++||+.....+.+.+.
T Consensus 105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~ 161 (197)
T cd03278 105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLK 161 (197)
T ss_pred CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 4568899999999999999999997 4679999999999999999999999643
No 316
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=7.8e-17 Score=113.94 Aligned_cols=64 Identities=28% Similarity=0.409 Sum_probs=58.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
++..+++.+||.|++|++.+..+++++|+++|||||+|||||.+.+.+-+ .+..++..|.||+|
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~------~I~~lk~~GatIif 185 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD------AIFELKEEGATIIF 185 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH------HHHHHHhcCCEEEE
Confidence 56788999999999999999999999999999999999999999999999 56777777888776
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=1.5e-16 Score=134.29 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++++.+|||||||||+||+||+.+|+++||||||+|||+..+..+++++.
T Consensus 1053 ~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999643
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.66 E-value=2.2e-16 Score=121.48 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.+.+||+||+||++|||||+.+|+++||||||++||+..++.+.+++
T Consensus 136 ~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll 187 (648)
T PRK10535 136 DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187 (648)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999953
No 319
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.66 E-value=2.3e-16 Score=119.40 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=44.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....|||||+||++||||++.+|+++||||||++||+.+...+.+.+.
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999988653
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.66 E-value=1.6e-16 Score=121.69 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=51.4
Q ss_pred HhccCcC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 10 KKKKKKK------KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 10 ~~~~~~~------~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.+|..++ .|||||||||+||++|+.+|++++|||||+|||+.....+.+. +..+..+|.|++
T Consensus 153 ~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~------L~~l~~~g~tvi 220 (617)
T TIGR00955 153 CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV------LKGLAQKGKTII 220 (617)
T ss_pred cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH------HHHHHhCCCEEE
Confidence 4466666 5999999999999999999999999999999999999999995 444444455544
No 321
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.66 E-value=3.9e-16 Score=107.75 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=47.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.++.+||+||+||++||++++ .+|+++++||||++||+..+..+++.+
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l 213 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI 213 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 4567899999999999999999998 578999999999999999999999954
No 322
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=2.6e-16 Score=119.24 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=44.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....||||||||++||||++.+|+++||||||++||+.+...+.+.+.
T Consensus 472 ~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~ 519 (574)
T PRK11160 472 GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA 519 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999988653
No 323
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.65 E-value=2.8e-16 Score=121.00 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP 72 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~ 72 (79)
....+||||||||++||||++.+|+++||||||++||+.+...+.+.+. ..+.+..+.+|
T Consensus 589 ~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 650 (694)
T TIGR01846 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3456899999999999999999999999999999999999999998654 22344444444
No 324
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.65 E-value=2.5e-16 Score=118.77 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...||||||||++||||++.+|++++|||||+++|+.+...+.+.+
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence 3479999999999999999999999999999999999999998864
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.65 E-value=2.5e-16 Score=129.76 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=43.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
....||||||||++|||||+.+|+||||||||++||++....|.+.+
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999998854
No 326
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.65 E-value=1.6e-16 Score=123.04 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=48.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG 73 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g 73 (79)
..+||||||||++||||++.+|+++||||||++||++..+.+.+.....+.+..+.+|.
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHr 673 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHR 673 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEecc
Confidence 45799999999999999999999999999999999999998888322334455555554
No 327
>KOG0055|consensus
Probab=99.65 E-value=2e-16 Score=128.01 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
-.+||||||||++|||||+.+|+||||||||++||++....+.+.+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999888853
No 328
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.65 E-value=4.4e-16 Score=106.25 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=45.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.++.+|||||+||++||||++. +|+++++||||++||+.....+++.+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l 205 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI 205 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 568899999999999999999973 58999999999999999999999854
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.64 E-value=3.2e-16 Score=129.14 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=45.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+.+||||||||++|||||+.+|++|||||||++||+.....+.+.+
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L 622 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999998854
No 330
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.64 E-value=4e-16 Score=117.33 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=44.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....|||||+||++||||++.+|+++||||||++||+...+.+++.+.
T Consensus 473 ~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 473 RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999999999888543
No 331
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=4.4e-16 Score=128.40 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=46.4
Q ss_pred HhccCc-----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKK-----KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~-----~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+|..+ ..|||||||||+||++|+.+|++++|||||+|||+.....+.+.+
T Consensus 1007 ~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140 1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 456665 589999999999999999999999999999999999999999953
No 332
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=2.3e-16 Score=119.90 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=55.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh-cCcchhhhcCCce
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-GGIIPMINSPGIG 75 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~-~~~~~~l~~~g~~ 75 (79)
+++.++||||||.||+||++|..+|+++||||||++||......+-+++.. .+ +..+++|++.
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~ 211 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRY 211 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 789999999999999999999999999999999999999999999997752 23 5556677654
No 333
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=8.1e-16 Score=103.74 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=47.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAV----YKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral----~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++||+|+ +.+|+++||||||+++|+..+..+.+++
T Consensus 101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l 156 (198)
T cd03276 101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL 156 (198)
T ss_pred cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH
Confidence 456889999999999999999999 5899999999999999999999998864
No 334
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.63 E-value=6.1e-16 Score=126.97 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHhccCcC----CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKK----KKKKKKKNLLDIFKAVYKNAD-IYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~----~LSgGqrqrl~iaral~~~p~-llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+|+.++ .|||||||||+||++|+.+|+ +++|||||+|||+.....+.+.+
T Consensus 889 ~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L 945 (1394)
T TIGR00956 889 SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945 (1394)
T ss_pred hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 34567776 799999999999999999997 99999999999999999999953
No 335
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=7.6e-16 Score=122.86 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=52.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++.+|||||+|||.||++|+.+| .++||||||+|||+.....++++ +..+.+.|.||+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~------L~~L~~~G~TVI 543 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINT------LKRLRDLGNTVI 543 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence 58899999999999999999999986 89999999999999999999995 444444454544
No 336
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.62 E-value=6.7e-16 Score=123.37 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=53.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.++++.+|||||+|||+||++|+.+| +++||||||+|||+..+..+++. +..+.+.|.||++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~------L~~L~~~G~TVIv 546 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIET------LKHLRDLGNTLIV 546 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence 58999999999999999999999997 99999999999999999999994 4445445555543
No 337
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=6.6e-16 Score=104.84 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
...++.+.+||||++||++|+|-|..-|+|++|||||++||+.+...+.+++ ...+..+++++++
T Consensus 125 ~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi-----~~~v~~q~vAv~W 189 (223)
T COG4619 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI-----HRYVREQNVAVLW 189 (223)
T ss_pred hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHH-----HHHhhhhceEEEE
Confidence 4678899999999999999999999999999999999999999999998852 2233345555543
No 338
>KOG0058|consensus
Probab=99.62 E-value=6.1e-16 Score=120.19 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=43.6
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+..+||||||||++|||||+.+|.++||||.|++||.+....+.+.+
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 455689999999999999999999999999999999999888887754
No 339
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=9.7e-16 Score=105.79 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=45.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+||+||+||++||++++.+ |+++||||||++||+..+..+.+.+
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i 202 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYI 202 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHH
Confidence 34566799999999999999999864 8999999999999999999998854
No 340
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.5e-16 Score=117.13 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.|||||+|||++||||.++++++|+||||++||.++.+.+.+.+.
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~ 500 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence 499999999999999999999999999999999999999998654
No 341
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.60 E-value=1.9e-15 Score=102.21 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=48.0
Q ss_pred hHHhccCcCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNL------LDIFKAVYKNADIYLLDDPLSAVDMHVGK-HLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqr------l~iaral~~~p~llllDEPt~~lD~~~~~-~i~~~~ 60 (79)
+...++++.+||+||+|| ++||++++.+|+++++|||+++||+..+. .+.+++
T Consensus 106 ~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l 165 (204)
T cd03240 106 NWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII 165 (204)
T ss_pred HHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 456688999999999996 78999999999999999999999999999 888854
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=99.60 E-value=9e-16 Score=126.49 Aligned_cols=61 Identities=33% Similarity=0.659 Sum_probs=50.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCc
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGI 74 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~ 74 (79)
...+||||||||++||||++.+|+++||||||++||++...++++.+.. .+.+..+.+|..
T Consensus 737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~ 800 (1495)
T PLN03232 737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800 (1495)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence 3457999999999999999999999999999999999999999876542 344555556543
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=1e-15 Score=125.62 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=43.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++.|||||||||+||++|+.+|++++|||||+|||+.....+.+.
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~ 251 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999995
No 344
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=2.7e-15 Score=102.16 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=46.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+||+||+||++||+|++. +|+++++||||+|||+..+..+.+.+
T Consensus 119 ~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l 174 (212)
T cd03274 119 KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYI 174 (212)
T ss_pred cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 44677889999999999999999974 47999999999999999999999953
No 345
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.6e-15 Score=104.57 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=46.9
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+++.+.+.+||||++|||.+||.|++ ++++++|||||++||..++..++++
T Consensus 126 ~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 126 SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred hhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 367889999999999999999999976 3468999999999999999999884
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.58 E-value=2e-15 Score=125.37 Aligned_cols=62 Identities=34% Similarity=0.702 Sum_probs=50.7
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCc
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGI 74 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~ 74 (79)
....+|||||||||+||||++.+|+++||||||++||++....+++.+.. .+.+..+.+|..
T Consensus 736 e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l 800 (1622)
T PLN03130 736 ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence 34557999999999999999999999999999999999999988876542 345555555543
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=2.6e-15 Score=123.92 Aligned_cols=64 Identities=45% Similarity=0.689 Sum_probs=53.0
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh-----cCcchhhhcCCc
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-----GGIIPMINSPGI 74 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~-----~~~~~~l~~~g~ 74 (79)
.+.++.+||||||||++||||++.+|++++|||||++||+.....+++.+.. .+.+..+.+|..
T Consensus 754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~ 822 (1522)
T TIGR00957 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822 (1522)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh
Confidence 3467789999999999999999999999999999999999999999997642 234445555543
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=2.5e-15 Score=123.90 Aligned_cols=62 Identities=26% Similarity=0.522 Sum_probs=51.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG 73 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g 73 (79)
...+.+|||||||||+||||++.+|+++||||||++||+.....+++.|. ..+.+..+.+|+
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~ 607 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45678999999999999999999999999999999999999999998643 224444455554
No 349
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=3.6e-15 Score=102.14 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=49.5
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
....|..|.++||||+||+.|||-|+..|++++|||||.|||...+..+++++
T Consensus 142 ~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDll 194 (258)
T COG4107 142 LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999964
No 350
>KOG0055|consensus
Probab=99.57 E-value=2.7e-15 Score=121.55 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=43.0
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+..+|||||+||++||||++.||+||||||.|++||.+....+-+-
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence 45669999999999999999999999999999999999988877774
No 351
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.5e-15 Score=113.65 Aligned_cols=63 Identities=10% Similarity=0.291 Sum_probs=58.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
-.+.++.+||||.||+|.|||.|..+|++|||||||.|+|.-...++++ ++..+.++|.++++
T Consensus 394 s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~------li~~lA~~G~ail~ 456 (500)
T COG1129 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR------LIRELAAEGKAILM 456 (500)
T ss_pred CccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH------HHHHHHHCCCEEEE
Confidence 4568899999999999999999999999999999999999999999999 67888888888875
No 352
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.3e-15 Score=103.77 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=52.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCcee
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGL 76 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~ 76 (79)
.-.-.|.++|||++|||.|||+++.+-+|++|||||++||..++.-+.++ +..-++.|.++
T Consensus 145 LW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVvel------i~e~Ka~GaAl 205 (235)
T COG4778 145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL------IREAKARGAAL 205 (235)
T ss_pred HhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHH------HHHHHhcCceE
Confidence 34567899999999999999999999999999999999999999999994 55555555554
No 353
>KOG0061|consensus
Probab=99.57 E-value=4.1e-15 Score=114.45 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=54.9
Q ss_pred HhccCcC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 10 KKKKKKK-----KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 10 ~~~~~~~-----~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
-+|..++ .+|||||+||+||.-++++|.++++||||+|||+....++.+ .++.+...|.+|+.
T Consensus 158 ~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~------~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ------LLKRLARSGRTVIC 225 (613)
T ss_pred hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH------HHHHHHhCCCEEEE
Confidence 4566665 599999999999999999999999999999999999999999 56777666777763
No 354
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.56 E-value=5.3e-15 Score=111.40 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=57.1
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+.++.+||-|+||||+|.+||+.+|++|||||||+-|.|.+.+++++ .+..+.+.|.||+|
T Consensus 134 p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~------~l~~l~~~G~tIi~ 195 (501)
T COG3845 134 PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE------ILRRLAAEGKTIIF 195 (501)
T ss_pred ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH------HHHHHHHCCCEEEE
Confidence 477899999999999999999999999999999999999999999999 57777778888775
No 355
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.6e-15 Score=111.37 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=50.6
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP 72 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~ 72 (79)
.+.-...|||||+||++|||+|.++.+++||||||.|||+.+..++++.+- ..+.+..+.+|
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTH 531 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH 531 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEec
Confidence 344556899999999999999999999999999999999999999999653 23344444444
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.55 E-value=9.3e-15 Score=121.06 Aligned_cols=51 Identities=43% Similarity=0.737 Sum_probs=46.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.+|||||||||+||||++.+|+++||||||++||+.....+++.+
T Consensus 775 ~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 775 EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999998888754
No 357
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.55 E-value=1e-14 Score=116.63 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=47.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L 876 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVL 876 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999 999999999999999999999953
No 358
>KOG0057|consensus
Probab=99.55 E-value=8.2e-15 Score=111.68 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=46.6
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.......|||||||||+||||++.+|+|+++||||++||.+...++++.+.
T Consensus 481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM 531 (591)
T ss_pred HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence 445667899999999999999999999999999999999999999999654
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.54 E-value=1e-14 Score=121.84 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=52.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++.+.+|||||+|||+||++|..+| .++||||||+|||+..+..+++. +..+.+.|.||+
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~l------L~~L~~~G~TVI 532 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINV------IKKLRDQGNTVL 532 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence 47889999999999999999999999 89999999999999999999994 444444455544
No 360
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.54 E-value=1.2e-14 Score=121.34 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=52.0
Q ss_pred hccCcCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~---~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++.+|||||+||++||++|+ .+|+++||||||+|||+..+..++++ +..+.+.|.|++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~l------L~~L~~~G~TVI 866 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYV------LQSLTHQGHTVV 866 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence 58899999999999999999997 69999999999999999999999995 444444454544
No 361
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.54 E-value=1e-14 Score=110.68 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
..||||||||+++||||+.+|.+++||||-++||.+....+.+- +..++.+|.+++
T Consensus 471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A------i~~~k~rG~~vv 526 (580)
T COG4618 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA------ILAAKARGGTVV 526 (580)
T ss_pred CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH------HHHHHHcCCEEE
Confidence 57999999999999999999999999999999999999998883 444555544443
No 362
>KOG0059|consensus
Probab=99.53 E-value=9.5e-15 Score=115.96 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=49.9
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+.++++++.+|||++||+++|.|++.+|++++|||||+|+||..++.++++
T Consensus 689 ~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i 740 (885)
T KOG0059|consen 689 GPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI 740 (885)
T ss_pred hhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999995
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.53 E-value=9.9e-15 Score=120.41 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=43.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
...+||||||||++|||||+.+|+|+||||||++||++....+.+.+.
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999998888654
No 364
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=1.4e-14 Score=103.74 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+.++..||-|||.|+.||.+|.++|++++|||||-|||...+..+.+++
T Consensus 148 ~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl 199 (325)
T COG4586 148 GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199 (325)
T ss_pred hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999953
No 365
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=2.4e-14 Score=114.40 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=47.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYK---NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~---~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.+
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L 874 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL 874 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999997 59999999999999999999999953
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.9e-14 Score=98.32 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=50.1
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.++.|-++++||-|||+||+|||.+++.+++.|||||+++||.+....+..++.
T Consensus 121 ~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~ 174 (209)
T COG4133 121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA 174 (209)
T ss_pred ccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH
Confidence 357789999999999999999999999999999999999999999998888754
No 367
>PLN03130 ABC transporter C family member; Provisional
Probab=99.52 E-value=2.6e-14 Score=118.80 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
...||||||||++|||||+.+|+|+||||||++||++....+.+.+.
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999998888543
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.51 E-value=1.5e-14 Score=110.15 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=55.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCce
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIG 75 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~ 75 (79)
+...++++.||||||.||.+|+.+..+|.+|||||||+.||......+.+.+..-.=+..+++|+..
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4568899999999999999999999999999999999999999999998876533222334566543
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.51 E-value=9.3e-15 Score=120.68 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=45.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
|..++.|||||||||+||++++.+|++++|||||+|||+....++.+.
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~ 378 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC 378 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHH
Confidence 556789999999999999999999999999999999999999999995
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=2.4e-14 Score=89.76 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=32.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~ 46 (79)
+.++.+||+||+|||+||+|++.+|+++||||||+
T Consensus 103 ~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 103 GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34449999999999999999999999999999996
No 371
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.49 E-value=9.8e-14 Score=92.45 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
||+||+||++||++++ .+|+++++|||++++|+.....+.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L 141 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI 141 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 9999999999999996 689999999999999999999998853
No 372
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.49 E-value=5.5e-14 Score=95.88 Aligned_cols=52 Identities=6% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAV----YKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral----~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+..+.+||+||+|++.+++++ +.+|+++++||||++||+..+..+++.+
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l 173 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDML 173 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHH
Confidence 345778999999999998877654 4799999999999999999999999964
No 373
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.48 E-value=7.7e-14 Score=115.35 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..||||||||++|||||+.+|+|+||||||+++|++....+.+.+.
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999988888653
No 374
>KOG0062|consensus
Probab=99.48 E-value=3.9e-14 Score=107.61 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=60.1
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCcee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGL 76 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~ 76 (79)
.+...++.++||||=|-|+++|||+..+||||||||||+.||..+...+.+.+.....+..+++|+..+
T Consensus 189 ~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~F 257 (582)
T KOG0062|consen 189 PEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNF 257 (582)
T ss_pred HHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHH
Confidence 467788999999999999999999999999999999999999999999988766555666677776654
No 375
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.7e-14 Score=99.82 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+..|++..+||||||||.-||+.++++.+.++||||.++||..+...++..
T Consensus 127 ~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~ 177 (252)
T COG4604 127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI 177 (252)
T ss_pred chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999994
No 376
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=3.4e-14 Score=95.39 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++.|.+||||||.||++-|+|+..|+.++||||++.||...+.++.+++
T Consensus 126 g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999888874
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.47 E-value=5.4e-14 Score=116.58 Aligned_cols=47 Identities=13% Similarity=0.308 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~-p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..+||||||||++|||||+.+ |+||||||||++||++....+.+.+.
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 357999999999999999996 89999999999999999999988653
No 378
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.47 E-value=5.5e-14 Score=116.09 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..||||||||++|||||+.+|+||||||||++||+.....+.+.+.
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999988654
No 379
>KOG0054|consensus
Probab=99.45 E-value=5.9e-14 Score=115.21 Aligned_cols=64 Identities=44% Similarity=0.756 Sum_probs=54.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCce
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGIG 75 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~~ 75 (79)
..+.-+||||||||+++|||++++.|+++||.|++++|++..+++++.|+. .+.++.+++|...
T Consensus 638 GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~ 704 (1381)
T KOG0054|consen 638 GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704 (1381)
T ss_pred cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh
Confidence 345678999999999999999999999999999999999999999999872 2456666776544
No 380
>KOG0927|consensus
Probab=99.44 E-value=1.4e-13 Score=105.12 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=50.0
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+..++++..||||++.|+++||+|..+|++++|||||++||...+..+-+.+.
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999988654
No 381
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.42 E-value=4.5e-13 Score=107.90 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=51.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYK--------NADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~--------~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++.+|||||+++++||+||+. +|+++|+||||++||+.....+++. +..+...|.+|+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~------l~~l~~~g~~v~ 1011 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDA------LDALNASGKTIG 1011 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHH------HHHHHHCCCEEE
Confidence 358899999999999999999995 8999999999999999999999994 444544555544
No 382
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=3.7e-13 Score=94.05 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=48.7
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+...+.+++-|||||||-|+++.|..+.|++++|||-|++|||.....+++.
T Consensus 139 enrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~l 190 (263)
T COG1101 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190 (263)
T ss_pred hhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999884
No 383
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.3e-13 Score=93.60 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=41.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...+|||||+||+++|++++. +|+++++|||+++||+.....+.+.+
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l 217 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL 217 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 345599999999999987654 99999999999999999999998864
No 384
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=1.1e-13 Score=95.79 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=47.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.++..++.||.||+|+++|++.++++|+++++|||++|+...+..+.-+++
T Consensus 139 ~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl 190 (249)
T COG4674 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190 (249)
T ss_pred hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999988888777754
No 385
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.39 E-value=6e-13 Score=99.87 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=45.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVY----------KNADIYLLDDPL-SAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~----------~~p~llllDEPt-~~lD~~~~~~i~~~~~ 61 (79)
.+.++.+|||||+||++||++++ .+|+++|||||| ++||+.....+.+.+.
T Consensus 462 ~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~ 523 (562)
T PHA02562 462 EDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILD 523 (562)
T ss_pred CccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHH
Confidence 45578999999999999999987 589999999998 7899999999988654
No 386
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=7.7e-13 Score=106.19 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=46.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+++|+||+||+. +|+++|+||||++||+.....+++.+
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l 1003 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL 1003 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999985 79999999999999999999998854
No 387
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5e-13 Score=99.99 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
-.||||+||||+|||++..+|++++|||.|++||.+..+.+..-
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~ 441 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH
Confidence 36999999999999999999999999999999999999998884
No 388
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.35 E-value=1.1e-12 Score=90.57 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.++-+|..||.||+|||++||||+-+|+++|.||..++||...+.++.+++
T Consensus 141 dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999964
No 389
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=2.5e-12 Score=83.95 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 17 KKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+||+||+|++++++++.. +|+++++|||++|+|+.....+.+.+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l 124 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAI 124 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 599999999999999987 78999999999999999999888853
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.34 E-value=1.3e-12 Score=98.76 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=53.6
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh----hhcCcchhhhcCCc
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC----ISGGIIPMINSPGI 74 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~----~~~~~~~~l~~~g~ 74 (79)
....++++.+||||+.|||+||.||..++++++||||++.||.+.+-.+...+ .+.+.+..+.+|++
T Consensus 446 ~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred HHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 35678999999999999999999999999999999999999999887666632 13334444445543
No 391
>PRK03918 chromosome segregation protein; Provisional
Probab=99.33 E-value=2.7e-12 Score=100.51 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=43.1
Q ss_pred ccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.++..|||||++ |++||++++.+|+++||||||++||+..+..+.+++
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l 837 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM 837 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH
Confidence 5688999999999 555666788999999999999999999999998864
No 392
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=4.6e-12 Score=103.73 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=43.9
Q ss_pred ccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 12 ~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
...++.|||||+| |++||++++.+|++++|||||++||+.....+.+.
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~ 1247 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHA 1247 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 3456789999999 99999999999999999999999999999888764
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.30 E-value=2.7e-12 Score=99.00 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 62 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~ 62 (79)
.++.-..||+||||||++||.+.++|++++|||-|++||+.....+++++.+
T Consensus 509 ~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999999999998753
No 394
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.30 E-value=5.7e-12 Score=96.01 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..|||||+||++||++++.. |+++|||||++|+|+.....+.+.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l 487 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL 487 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 58999999999999999885 6999999999999999999999854
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.29 E-value=4.7e-12 Score=95.88 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=54.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCCcee
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPGIGL 76 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g~~~ 76 (79)
...|+.+.+||||+-||++||.++..+.+++++||||+.||...+-.+...++ +.+....+.+|+.++
T Consensus 205 nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav 275 (591)
T COG1245 205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV 275 (591)
T ss_pred hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH
Confidence 56789999999999999999999999999999999999999999888777433 223334444555443
No 396
>KOG0927|consensus
Probab=99.28 E-value=1.8e-12 Score=99.10 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=48.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+.+..+||+|||.||.+|++++..|.+++|||||++||......+.+.+-
T Consensus 501 d~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN 553 (614)
T KOG0927|consen 501 DAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN 553 (614)
T ss_pred cccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999988888653
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.28 E-value=7.9e-12 Score=83.86 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+..+....++|+||+|++.+++++ .+|+++++|||++|+|+..+..+..
T Consensus 83 ~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~ 131 (200)
T cd03280 83 QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAI 131 (200)
T ss_pred hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 456677899999999999999885 8999999999999999999888864
No 398
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.26 E-value=7.2e-12 Score=98.90 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=46.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+.++.+|||||+++++||++++ .+|+++|||||+++||+..+..+.+++.
T Consensus 1081 ~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~ 1137 (1179)
T TIGR02168 1081 GKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLK 1137 (1179)
T ss_pred CCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHH
Confidence 3457899999999999999999984 5679999999999999999999988653
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.25 E-value=2e-12 Score=90.90 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=51.0
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++....||.+|.-|+-|+|.||.|++.+|+++|.||||+++++..+.+++.++
T Consensus 149 kDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLL 201 (330)
T COG4170 149 KDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLL 201 (330)
T ss_pred HHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999964
No 400
>KOG0062|consensus
Probab=99.24 E-value=6.7e-12 Score=95.58 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=47.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+.+.+...+|||||+-||+||.+...+|.+|+|||||+.||-.....+-.-+.
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999998887776543
No 401
>KOG0065|consensus
Probab=99.22 E-value=2.3e-12 Score=105.38 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=56.4
Q ss_pred HHhccCcCC----CCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 9 KKKKKKKKK----KKKKKKNLLDIFKAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 9 ~~~~~~~~~----LSgGqrqrl~iaral~~~p-~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+.+|.-++. ||..||+||.||--|+.+| .||+|||||+|||++....+++ +++.+..+|.||+
T Consensus 917 ~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~------~lrkla~tGqtIl 984 (1391)
T KOG0065|consen 917 EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR------FLRKLADTGQTIL 984 (1391)
T ss_pred hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH------HHHHHHhcCCeEE
Confidence 456777777 9999999999999999999 8888999999999999999999 6788888888876
No 402
>KOG0056|consensus
Probab=99.21 E-value=8.2e-12 Score=95.69 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=41.4
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
.+.-.||||++|||+|||++...|.+++|||.|++||-.....+-.
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQa 715 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA 715 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHH
Confidence 3455799999999999999999999999999999999988777766
No 403
>PRK10869 recombination and repair protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=91.93 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..|||||+||++||++++. +|+++|||||++|+|+.....+.+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~ 478 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLR 478 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999997 589999999999999999999998643
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=4.6e-11 Score=94.72 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=52.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh---hhcCcchhhhcCCcee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC---ISGGIIPMINSPGIGL 76 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~---~~~~~~~~l~~~g~~~ 76 (79)
..+++.+||||+.|||.+|.-|.... -++||||||+||-.+..+++++.+ +..|-+..+.+||.-|
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdV 887 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDV 887 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccce
Confidence 56889999999999999999998877 899999999999999888888843 2334444444555444
No 405
>PRK01156 chromosome segregation protein; Provisional
Probab=99.18 E-value=5.8e-11 Score=93.83 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=43.3
Q ss_pred cCcCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDI------FKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~i------aral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++..|||||+++++| |++++.+|++++|||||++||+.....+.+++
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l 850 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII 850 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHH
Confidence 4688999999999975 59999999999999999999999999888854
No 406
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.2e-11 Score=82.48 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=53.4
Q ss_pred hHHhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 8 KKKKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 8 ~~~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.+++++++. .+|||+|+|.+|+.+++.+|++.|||||=||||....+.+.+ .+..+.+.|.+++
T Consensus 134 ~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~------~i~~lr~~~~~~l 198 (251)
T COG0396 134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE------GINALREEGRGVL 198 (251)
T ss_pred HHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHH------HHHHHhcCCCeEE
Confidence 467888887 799999999999999999999999999999999999998888 3444555554443
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=5.8e-11 Score=83.09 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 15 KKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+|+||+|+++||++++ .+|+++++||||++||+..+..+++.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~ 236 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE 236 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence 5568999999999999985 7999999999999999999999999754
No 408
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.11 E-value=8.9e-11 Score=93.20 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=46.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
....++.+|||||+++++||++++. .|++++||||+++||+.++..+.+++.
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~ 1122 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIR 1122 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHH
Confidence 3457789999999999999999985 689999999999999999999999654
No 409
>KOG0060|consensus
Probab=99.10 E-value=1.1e-10 Score=90.00 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=48.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcc
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGII 66 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~ 66 (79)
.-..||+||+||+++||.++++|++.+|||-|+++|......+.+.|++.+++
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT 619 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGIT 619 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCe
Confidence 44579999999999999999999999999999999999999999988765544
No 410
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.09 E-value=1.4e-10 Score=95.75 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=50.7
Q ss_pred hHHhccCcCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc
Q psy1505 8 KKKKKKKKKKKKKKKKNLLD----IFKA--------VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS 71 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~----iara--------l~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~ 71 (79)
.+..++..+.|||||+|+++ +|++ +..+|++++|||||+++|+.+...+++++.+.++..++++
T Consensus 1238 ~~~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s 1313 (1353)
T TIGR02680 1238 WRPLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTS 1313 (1353)
T ss_pred ccchhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 34667778999999999996 5655 4479999999999999999999999997654444434333
No 411
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.09 E-value=9.2e-11 Score=88.73 Aligned_cols=62 Identities=10% Similarity=0.227 Sum_probs=54.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+.++.+||||.+||+-+||-+..+|+++|+.+||.|||.-..+.+++ .+....+.|.+|++
T Consensus 397 ~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~------~l~e~r~~G~AVLL 458 (501)
T COG3845 397 PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE------RLLELRDAGKAVLL 458 (501)
T ss_pred CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHH------HHHHHHhcCCEEEE
Confidence 356789999999999999999999999999999999999999999999 56666777777654
No 412
>KOG0066|consensus
Probab=99.05 E-value=2.5e-10 Score=87.07 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=45.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.-....|||||+.||++|-.-...|++|||||||++||.+....+.+.+.
T Consensus 699 TikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn 748 (807)
T KOG0066|consen 699 TIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN 748 (807)
T ss_pred eEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence 34567899999999999999999999999999999999999998888654
No 413
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.1e-09 Score=77.13 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh---hhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC---ISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~---~~~~~~~~l~~~g~ 74 (79)
++.|.|+.++|.||+-||+++.|...+|+++|+||-.+..|+..+++=.+.+ .+.+.+..+++|..
T Consensus 139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 6889999999999999999999999999999999999999999887665532 23334445555543
No 414
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=7.9e-10 Score=80.87 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYK---------NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~---------~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..+|.||++++.||.+++. +|+++|||||+++||+..+..+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~ 328 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQ 328 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHh
Confidence 4789999999999999999 999999999999999999999999764
No 415
>PRK00064 recF recombination protein F; Reviewed
Probab=98.97 E-value=8.7e-10 Score=80.31 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=43.9
Q ss_pred cCcCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.....+|.||+|++.+|+.++ .+|++++||||+++||+..+..+++.+.
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~ 326 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLK 326 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHh
Confidence 345689999999999999886 6899999999999999999999998654
No 416
>PRK02224 chromosome segregation protein; Provisional
Probab=98.93 E-value=1.5e-09 Score=85.48 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=41.4
Q ss_pred cCcCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKN------LLDIFKAVYKN-----A-DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrq------rl~iaral~~~-----p-~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+.+||||+++ |++++++++.+ | +++|+||||+++|+..+..+.+++
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l 836 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLV 836 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHH
Confidence 357899999999 89999998863 3 679999999999999999998854
No 417
>KOG0054|consensus
Probab=98.91 E-value=1.8e-09 Score=89.31 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=42.9
Q ss_pred hccCc----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKK----KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~----~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+|..+ .++|-||||.+++||||..+++|++|||.|+++|++.-..+-+.+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tI 1318 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHH
Confidence 45444 469999999999999999999999999999999999776666643
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.90 E-value=2.5e-09 Score=71.14 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+..+...+++|+|++|...+... +.+|+++|+|||++|+|+.....+..
T Consensus 53 d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~ 101 (185)
T smart00534 53 DSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAA 101 (185)
T ss_pred CchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHH
Confidence 44567788899988874444433 34999999999999999998777644
No 419
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.83 E-value=6.3e-09 Score=71.43 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=39.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDP---LSAVDMHVGKHLF 57 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEP---t~~lD~~~~~~i~ 57 (79)
+.....+|.|+++++.+++++ +.+|+++||||| |+++|+.......
T Consensus 84 d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i 134 (222)
T cd03285 84 DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI 134 (222)
T ss_pred cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH
Confidence 344678999999999999999 899999999999 8889998775443
No 420
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.79 E-value=8.4e-10 Score=75.86 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=51.8
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYK-----NA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~-----~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.++..+...+||||+=|||-+|..+.. || +++++|||.++||......+.. ++..+...|.+|++
T Consensus 116 ~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr------ll~~~c~~G~~vim 187 (248)
T COG4138 116 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR------LLSALCQQGLAIVM 187 (248)
T ss_pred cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH------HHHHHHhCCcEEEE
Confidence 356778889999999999999987754 34 7999999999999999888887 34555555665554
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.78 E-value=1.6e-08 Score=67.78 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=36.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
.....+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+..
T Consensus 85 i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 34556778888887 555566778999999999999999998876654
No 422
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.78 E-value=2e-08 Score=60.53 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=37.6
Q ss_pred hccCcCCCCHHHHHH-HHHHH------HHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNL-LDIFK------AVYK------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqr-l~iar------al~~------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+..+.+||||+|. +.++. .+.. .|++++||||++++|+.....+++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 467889999999953 33333 2223 37999999999999999999999853
No 423
>PRK14079 recF recombination protein F; Provisional
Probab=98.77 E-value=1.5e-08 Score=73.68 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..+|+||++++.+|..|+ .+|++++||||+++||+..+..+.+.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~ 316 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAA 316 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHh
Confidence 468999999999999998 8999999999999999999999998653
No 424
>KOG0066|consensus
Probab=98.73 E-value=2.2e-09 Score=81.95 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=46.3
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
++..+++...+|||-|-||++||||...|-++.|||||+.||....-.+-+
T Consensus 403 kEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdN 453 (807)
T KOG0066|consen 403 KEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDN 453 (807)
T ss_pred hhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhh
Confidence 567889999999999999999999999999999999999999887665544
No 425
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.3e-08 Score=78.93 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=42.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHH------hcC--CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAV------YKN--ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral------~~~--p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
-+++.+||||++-.++||-+| ..+ -++++|||||..||+.....+.+.+
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l 866 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH
Confidence 368899999999987776655 456 7999999999999999999998854
No 426
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.68 E-value=1.2e-07 Score=61.34 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=42.0
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
...+..++|.|++|.+.++..+...+ .++++|||-++|.|..+..+.+++.
T Consensus 230 ~~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~ 283 (303)
T PF13304_consen 230 KEIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLK 283 (303)
T ss_dssp EEGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHH
T ss_pred eEEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHH
Confidence 34567788999999999998888876 8999999999999999999998653
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.67 E-value=3.9e-08 Score=65.93 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHh
Q psy1505 22 KKNLLDIFKAVYKNADIYLLDDPL-----SAVDMHVGKHLFEDC 60 (79)
Q Consensus 22 qrqrl~iaral~~~p~llllDEPt-----~~lD~~~~~~i~~~~ 60 (79)
+++++.||++++.+|+++++|||| ++||+..+..+.+++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999954
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=6.3e-08 Score=65.86 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=37.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF 57 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~ 57 (79)
..++..+++|.|++|.. .+.+++.+|+++++|||+.|+|+.....+.
T Consensus 84 ~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 84 SMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred ccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 34567788999999764 555578999999999999999998755543
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.61 E-value=6e-08 Score=76.93 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=42.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
-.....+++|+||++++.|++++ .+|+++|+|||++|+|+.....+..
T Consensus 383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence 34567789999999999999998 8999999999999999998877754
No 430
>KOG2355|consensus
Probab=98.60 E-value=3.4e-08 Score=69.39 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=49.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
-..+|.|||+||.|++.|.+.=++++|||-|..||...+..+++++ -...-+.|.|+++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFl-----keEce~RgatIVY 203 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFL-----KEECEQRGATIVY 203 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHH-----HHHHhhcCcEEEE
Confidence 3568999999999999999988999999999999999999999952 2334455777765
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.60 E-value=1e-07 Score=76.09 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=50.6
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++.+.+||||+.||+-||.-+-++- =+++||||+.||=+..-..+.+ .+..+.+.|-|++
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~------tL~~LRDlGNTvi 537 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE------TLKRLRDLGNTVI 537 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH------HHHHHHhcCCeEE
Confidence 47889999999999999999998774 5788999999999998888888 4555666655554
No 432
>KOG0064|consensus
Probab=98.58 E-value=2.2e-08 Score=77.39 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=44.3
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..-..||||++||+++||.++++|+..+|||-|+++.+.....+++...
T Consensus 608 dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 608 DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 3445799999999999999999999999999999999999999998643
No 433
>KOG0063|consensus
Probab=98.53 E-value=9.2e-08 Score=72.62 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=43.4
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGK 54 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~ 54 (79)
++..|+-+.+||||+.||+++|.+|-..+++++.|||.+.||.+.+-
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi 493 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI 493 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH
Confidence 45678889999999999999999999999999999999999999765
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.52 E-value=3.9e-07 Score=61.24 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 15 KKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..|||||+..++||--|+ ..+++++||||.++||+.++..+.+++.
T Consensus 134 ~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~ 184 (220)
T PF02463_consen 134 PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLK 184 (220)
T ss_dssp TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3479999999999997653 4569999999999999999999999654
No 435
>KOG0063|consensus
Probab=98.49 E-value=7.8e-08 Score=73.00 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
...++-+.+||||+-||.+||.+.+.+.++.++|||.+.||...+-....
T Consensus 205 ~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~ 254 (592)
T KOG0063|consen 205 NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI 254 (592)
T ss_pred hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH
Confidence 35678899999999999999999999999999999999999998876554
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.42 E-value=4.9e-07 Score=71.79 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF 57 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~ 57 (79)
-.....+++|+|++++..|++++ .+|+++|+|||++|+|+.....+.
T Consensus 378 si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 378 SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA 424 (771)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence 44566789999999999999887 789999999999999999998774
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.36 E-value=8.5e-07 Score=57.69 Aligned_cols=50 Identities=4% Similarity=-0.215 Sum_probs=38.6
Q ss_pred HhccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHH
Q psy1505 10 KKKKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVD---MHVGKHLFED 59 (79)
Q Consensus 10 ~~~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD---~~~~~~i~~~ 59 (79)
..+..+..+|+|+.| ......+...+|+++++|||++.+| ......+.++
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l 122 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRL 122 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHH
Confidence 456778889999998 4444455667899999999999999 6666666663
No 438
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.29 E-value=2.9e-06 Score=57.38 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 22 KKNLLDIFKAVYK--NADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 22 qrqrl~iaral~~--~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+.+++.-+-..+. +|+++|+|||++|+|+.....+..
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHH
Confidence 3455544444455 999999999999999998876643
No 439
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.25 E-value=3.1e-06 Score=57.77 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505 20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHL 56 (79)
Q Consensus 20 gGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i 56 (79)
.-+-|+++++++++.+|+++|+|||++|+|+.....+
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~ 129 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGL 129 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHH
Confidence 3467999999999999999999999999999765444
No 440
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.25 E-value=2.1e-06 Score=64.92 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=50.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.+..||-|||+|+++.-|+..+.+|+++||=.+.-||..+..+++. .+-.++++|.|++
T Consensus 445 s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~-----lLp~LK~qGKTI~ 503 (546)
T COG4615 445 SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV-----LLPLLKEQGKTIF 503 (546)
T ss_pred cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH-----HhHHHHHhCCeEE
Confidence 3567999999999999999999999999999999999999999986 3445556666554
No 441
>KOG0065|consensus
Probab=98.18 E-value=5.3e-07 Score=74.73 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=45.0
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
-|....-.|||||+||.+|-+++.+++++.+||+|.|||....-++...
T Consensus 254 Gnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~ 302 (1391)
T KOG0065|consen 254 GNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKA 302 (1391)
T ss_pred cccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHH
Confidence 3566778999999999999999999999999999999999999888883
No 442
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.17 E-value=2e-06 Score=65.42 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=45.8
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+-+..++..+||-||+-|+.||++++.+|.+++.||-.+.||+.....+..
T Consensus 498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 345567889999999999999999999999999999999999998877766
No 443
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.94 E-value=3.4e-05 Score=60.02 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=35.1
Q ss_pred cCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
.++..||||++|-++||-.++- +.++ ++|||++.||+..+..+.+
T Consensus 547 ~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~ 597 (650)
T TIGR03185 547 IDKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVV 597 (650)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHH
Confidence 3678899999999866654332 3456 4699999999999998875
No 444
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.89 E-value=1.3e-05 Score=54.83 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=30.4
Q ss_pred cCCCCHHHHHH----HHHHHHHh--cCCCEEEEeCC---CCCCCHHHH-HHHHHH
Q psy1505 15 KKKKKKKKKNL----LDIFKAVY--KNADIYLLDDP---LSAVDMHVG-KHLFED 59 (79)
Q Consensus 15 ~~~LSgGqrqr----l~iaral~--~~p~llllDEP---t~~lD~~~~-~~i~~~ 59 (79)
..++|.|+.+. ..++.++. .+|+++||||| |+++|.... ..+.+.
T Consensus 83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~ 137 (216)
T cd03284 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEY 137 (216)
T ss_pred hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 34567776664 35666664 69999999999 777887543 334443
No 445
>PRK13695 putative NTPase; Provisional
Probab=97.61 E-value=7.9e-05 Score=48.66 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=38.4
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDD--PLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDE--Pt~~lD~~~~~~i~~~~ 60 (79)
++...+|++++-...+++....+|+++++|| |+.++++...+.+.+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~ 123 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL 123 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence 4456799999999999999889999999999 66677766666665543
No 446
>KOG0933|consensus
Probab=97.53 E-value=3e-05 Score=63.19 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=40.5
Q ss_pred CcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++||||||..|+++-.|+ ..++++||||-=++||-.+.+.|-+++.
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIk 1130 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIK 1130 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHH
Confidence 45689999999999876543 4569999999999999999999988654
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.44 E-value=0.00034 Score=48.21 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHH
Q psy1505 17 KKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAV----DMHVGKHLFED 59 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~----~~p~llllDEPt~~l----D~~~~~~i~~~ 59 (79)
.+|+++.++-.+.+.+. .+|+++++||||+++ |+.....+.++
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~ 145 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAF 145 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHH
Confidence 35666555544444333 369999999999999 77777777774
No 448
>PF13175 AAA_15: AAA ATPase domain
Probab=97.35 E-value=0.00067 Score=48.63 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=39.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhc------C-CC---EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYK------N-AD---IYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~------~-p~---llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.-+..++|.|.++.+.|+-.+.. + +. ++++|||-+.|-|..+..+++.+
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L 394 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFL 394 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHH
Confidence 45778999999998887776521 1 22 99999999999999999999954
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.00073 Score=46.54 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 16 KKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
..+|.=+.-...++..+ +.+|+++|+|||+.|+++.....+...
T Consensus 88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~a 133 (218)
T cd03286 88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHA 133 (218)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHH
Confidence 34454444444444433 468999999999999999988777664
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.24 E-value=0.00078 Score=46.84 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=45.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.+.-...|.|+--.--+.+.+ ++--++|||||-++|.|.-+-.++.. +..+.+.|..+|
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~------l~~la~sGaQ~I 182 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAI------LRDLADSGAQII 182 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHH------HHHHHhcCCeEE
Confidence 344567899999888888888 78899999999999999999888884 444444444443
No 451
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.00085 Score=49.53 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=42.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~--p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..+||-|+-+.+++|.+|.+. |.++++|||-++|=|.....+..++.
T Consensus 268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~ 316 (373)
T COG4637 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMR 316 (373)
T ss_pred hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHH
Confidence 459999999999999999764 79999999999999999998888754
No 452
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.15 E-value=0.00048 Score=56.83 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=43.6
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+....||||+|-..+||-.|+- ..++++|||-=++||..++..+.+++.
T Consensus 1061 ~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~ 1114 (1163)
T COG1196 1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIK 1114 (1163)
T ss_pred ccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHH
Confidence 44778899999999999987754 459999999999999999999999764
No 453
>KOG0964|consensus
Probab=97.14 E-value=0.00015 Score=59.27 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+|||||+-.++||-.++.+ ++++||||.=++||++.+..|-.++
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lI 1144 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLI 1144 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHH
Confidence 348999999999999988653 4999999999999999999998853
No 454
>PF13166 AAA_13: AAA domain
Probab=97.08 E-value=0.0024 Score=49.62 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=41.2
Q ss_pred cCcCCCCHHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAV--YK-------NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral--~~-------~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+...||-|++.-++||--| +. +..++++|.|.++||...+..+...+.
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~ 553 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLK 553 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHH
Confidence 45689999999999998744 23 568999999999999999999988643
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.01 E-value=0.0026 Score=43.29 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHH
Q psy1505 17 KKKKKKKNLLDIFKAVYK--NADIYLLDDPLSA---VDMHVGKHLFE 58 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~--~p~llllDEPt~~---lD~~~~~~i~~ 58 (79)
..|.++.+.+..+..++. +|+++++||||+. .|......+++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 457788999999998887 8999999999964 44444444433
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.95 E-value=0.0038 Score=38.68 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=27.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD 49 (79)
....+.+...+...+++...+|+++++|||+.-++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 65 ADDPAAARLLSKAERLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHH
Confidence 34455666677888899999999999999995443
No 457
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.93 E-value=0.0015 Score=52.58 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHh
Q psy1505 28 IFKAVYKNADIYLLDDPLSAV-DMHVGKHLFEDC 60 (79)
Q Consensus 28 iaral~~~p~llllDEPt~~l-D~~~~~~i~~~~ 60 (79)
|++++..+|.++++|||+.+| |+.....+.+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~l 713 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWL 713 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHH
Confidence 567888999999999999999 788888888853
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=96.88 E-value=0.00054 Score=54.89 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHh
Q psy1505 33 YKNADIYLLDDPLSAV-DMHVGKHLFEDC 60 (79)
Q Consensus 33 ~~~p~llllDEPt~~l-D~~~~~~i~~~~ 60 (79)
..+|.++++|||+.+| |+.....+.+++
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~l 678 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWL 678 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHH
Confidence 5799999999999999 688888888853
No 459
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.0048 Score=42.59 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505 16 KKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHL 56 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i 56 (79)
..+|.=+.....++..+ +.+|+++|+|||..|.|+.....+
T Consensus 89 ~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i 131 (222)
T cd03287 89 HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAI 131 (222)
T ss_pred cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHH
Confidence 34454444444444443 468999999999888886655543
No 460
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.50 E-value=0.0012 Score=46.44 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=30.8
Q ss_pred cCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy1505 15 KKKKKKKK--------KNLLDIFKAVYKNADIYLLDDPLSAVDM 50 (79)
Q Consensus 15 ~~~LSgGq--------rqrl~iaral~~~p~llllDEPt~~lD~ 50 (79)
...+|||+ +|++++||++..+++|.+| ||+.+|.
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~ 168 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDT 168 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecC
Confidence 34579999 9999999999899999999 9999994
No 461
>KOG0018|consensus
Probab=95.87 E-value=0.0062 Score=50.36 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=44.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
++-++...||||++=..+||-.++.. +++++|||-=++||..+...|...+.
T Consensus 1044 KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1044 KRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred cccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence 44677889999999999999988654 59999999999999999999998543
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.82 E-value=0.0043 Score=42.46 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHhcCCCEEEEeCCCCC------CCHHHHHHHHHH
Q psy1505 31 AVYKNADIYLLDDPLSA------VDMHVGKHLFED 59 (79)
Q Consensus 31 al~~~p~llllDEPt~~------lD~~~~~~i~~~ 59 (79)
+...+|+++++| |+++ .|+.....+++.
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~ 140 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKA 140 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHH
Confidence 345799999999 7764 688877777774
No 463
>KOG0962|consensus
Probab=95.81 E-value=0.0093 Score=50.15 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=34.7
Q ss_pred CCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 18 KKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 18 LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
-|-||+= |+++|=.+..++.+|-|||||+.||..+..-+..
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~ 1230 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAK 1230 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHH
Confidence 4667764 7788899999999999999999999998876644
No 464
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.50 E-value=0.021 Score=45.80 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHH
Q psy1505 30 KAVYKNADIYLLDDPLSAVD-MHVGKHLFED 59 (79)
Q Consensus 30 ral~~~p~llllDEPt~~lD-~~~~~~i~~~ 59 (79)
..+-.+|.++++|||..++| +.....+.++
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~ 660 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREW 660 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHH
Confidence 33456899999999999999 6777777774
No 465
>KOG0996|consensus
Probab=94.99 E-value=0.013 Score=48.98 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.0
Q ss_pred cCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+..||||++=.-+||-.++. ..++++|||-=++||..++.-|-+.+
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYI 1242 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYI 1242 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHH
Confidence 5688999999999888887754 34999999999999999998887754
No 466
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.035 Score=41.33 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=39.6
Q ss_pred cCCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 15 KKKKKKKKKNLLDIFKAVYK---------NADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~---------~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
....|.||++-+.+|.-|+. .++|++|||-++-||+.-+..+++.
T Consensus 273 ~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~ 326 (363)
T COG1195 273 ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT 326 (363)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh
Confidence 45789999999988876654 6799999999999999999999996
No 467
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.91 E-value=0.076 Score=37.76 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.4
Q ss_pred HHHHHhcCCCEEEEeCCCC
Q psy1505 28 IFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 28 iaral~~~p~llllDEPt~ 46 (79)
+..+.+++|+++++|||+.
T Consensus 187 ~~~i~~~~P~villDE~~~ 205 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGR 205 (270)
T ss_pred HHHHHhCCCCEEEEeCCCc
Confidence 3344447999999999974
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=94.76 E-value=0.099 Score=42.47 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=33.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYK--NADIYLLDDP---LSAVDMHV 52 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~--~p~llllDEP---t~~lD~~~ 52 (79)
.|.-...+|--+..+.+++.++-. ++.++|+||| |+.+|...
T Consensus 660 ~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a 706 (854)
T PRK05399 660 SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS 706 (854)
T ss_pred ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH
Confidence 355566788889999999998876 8999999999 77777544
No 469
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.57 E-value=0.068 Score=42.80 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHH
Q psy1505 31 AVYKNADIYLLDDPLSAVD-MHVGKHLFED 59 (79)
Q Consensus 31 al~~~p~llllDEPt~~lD-~~~~~~i~~~ 59 (79)
.+..+|.++++|||...|| +.....+.++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~ 667 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDW 667 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHH
Confidence 4567899999999999999 7777777774
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.99 E-value=0.11 Score=39.49 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=34.0
Q ss_pred CcCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy1505 14 KKKKKKKKKKNLLDIFKAVY-------KNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~-------~~p~llllDEPt~~lD~~ 51 (79)
...+-|.|+|.|+..+.+.+ .++-++++|+||...|+.
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 34678999999999999887 789999999999999997
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.67 E-value=0.61 Score=27.18 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=37.2
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF 57 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~ 57 (79)
......++++..+..+.++-...|.++++||+..-.+........
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 56 GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 345567888888989999988889999999999999888776544
No 472
>PF13514 AAA_27: AAA domain
Probab=93.21 E-value=0.22 Score=41.33 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=38.2
Q ss_pred ccCcCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKN------LLDIFKAV-YKNADI-YLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrq------rl~iaral-~~~p~l-lllDEPt~~lD~~~~~~i~~~~ 60 (79)
...+..||.|.+= |++++..+ ..+.++ +|+|+++.+.|..-...+++++
T Consensus 1020 ~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L 1076 (1111)
T PF13514_consen 1020 RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELL 1076 (1111)
T ss_pred EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHH
Confidence 3567789999986 55555566 345566 8999999999999999998854
No 473
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.16 E-value=0.045 Score=46.91 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred CcCCCCHHHHHHHHHHHHHh--------cC--------C-CEEEEeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVY--------KN--------A-DIYLLDDPLSAVDMHVGKHLFEDCISGG 64 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~--------~~--------p-~llllDEPt~~lD~~~~~~i~~~~~~~~ 64 (79)
-.+.||||++..+.++..++ .. | ++|+|||- +++|......++++|...+
T Consensus 1362 ~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~ 1428 (1486)
T PRK04863 1362 ESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLD 1428 (1486)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcC
Confidence 35889999998887766554 21 2 45689999 9999999999999876433
No 474
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.58 E-value=0.27 Score=39.04 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=38.1
Q ss_pred cCcCC-CCHHHHHHHHHHHHH---hcCC-----CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKK-KKKKKKNLLDIFKAV---YKNA-----DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~-LSgGqrqrl~iaral---~~~p-----~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.-.++ ||-|++.-++++--| ..+| .++++|.|.+++|......+..++
T Consensus 524 ~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v 580 (758)
T COG4694 524 QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLV 580 (758)
T ss_pred ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHH
Confidence 34455 999999999876544 4566 678999999999999988888843
No 475
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=92.41 E-value=0.3 Score=37.39 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=40.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
--.+=||...|=..|.-||-.++++||+||=|++..--.+...++.++
T Consensus 319 sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv 366 (448)
T PF09818_consen 319 STENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALV 366 (448)
T ss_pred cccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhh
Confidence 345679999999999999999999999999999987776665555544
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.98 E-value=0.013 Score=44.37 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHhccCcCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIF--KAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~ia--ral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+..++.+.++|+|++|||.|+ .++...|+.. ...+..++++
T Consensus 107 ~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~L 149 (484)
T TIGR02655 107 ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRL 149 (484)
T ss_pred HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHH
Confidence 455666778888888888888 4554444333 3556666663
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.73 E-value=0.35 Score=32.31 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
++++++..+|+++++|||. |++....+.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~ 95 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTA 95 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH
Confidence 5778999999999999996 66665555553
No 478
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.30 E-value=0.35 Score=39.57 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHH---HHHHhcC--------C--CEEEEeCCCCCCCHHHHHHHHHHhhhc
Q psy1505 16 KKKKKKKKNLLDI---FKAVYKN--------A--DIYLLDDPLSAVDMHVGKHLFEDCISG 63 (79)
Q Consensus 16 ~~LSgGqrqrl~i---aral~~~--------p--~llllDEPt~~lD~~~~~~i~~~~~~~ 63 (79)
+.+||||+++++. |.+|... | ..+||||.++--|+.....++..+.+-
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc
Confidence 4699999999974 5555432 2 579999999999999888887766533
No 479
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=90.71 E-value=0.32 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=32.5
Q ss_pred cCcCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLD--IFKAVYK-NADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~--iaral~~-~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++..+|+|+++++. +.+.+-. +++++ |++++|......+++.
T Consensus 143 nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 143 TKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAA 188 (196)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHH
Confidence 456678999999877 5566544 34443 9999999999999985
No 480
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=90.49 E-value=2.5 Score=29.26 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=33.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+.....+|.=+.-...++..+ +.+-.++|+||+..|-++.....+..
T Consensus 97 d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~ 145 (235)
T PF00488_consen 97 DSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAI 145 (235)
T ss_dssp -SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHH
T ss_pred cccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHH
Confidence 344556777777777777766 35678999999999999998776544
No 481
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.76 E-value=2.3 Score=33.48 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=36.4
Q ss_pred cCCCCHHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 15 KKKKKKKKKNLLDIFK--AVYKN--ADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 15 ~~~LSgGqrqrl~iar--al~~~--p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
..-.|||+-.|+++|- +++.. .+.+||||-=+|+.-.....|-+.
T Consensus 429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~ 477 (557)
T COG0497 429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKK 477 (557)
T ss_pred HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHH
Confidence 3567999999999997 33333 469999999999999988888774
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.46 E-value=1.1 Score=32.50 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 26 l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
-+++++|..+|+++++||+. |+......++.
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a 216 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALTA 216 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH
Confidence 34778899999999999997 77777655553
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.40 E-value=1.2 Score=31.86 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCEEEEeCCCC
Q psy1505 27 DIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~ 46 (79)
.+..+|..+|+++++|||.+
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~ 229 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRG 229 (308)
T ss_pred HHHHHhcCCCCeEEEeccCC
Confidence 56778899999999999996
No 484
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.98 E-value=0.48 Score=34.43 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHhcCC----CEEEEeCCCCCCCHHHHHHHHHHhhhc--CcchhhhcCC
Q psy1505 18 KKKKKKNLLDIFKAVYKNA----DIYLLDDPLSAVDMHVGKHLFEDCISG--GIIPMINSPG 73 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p----~llllDEPt~~lD~~~~~~i~~~~~~~--~~~~~l~~~g 73 (79)
.+-.|-+. +...+...| .=+++|||+.+||+..++.+...+.+. +.+..+.+|+
T Consensus 93 I~id~iR~--l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 93 IKIDAVRE--IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred cCHHHHHH--HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 44455443 333343334 235578999999999999999976532 3334445554
No 485
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.87 E-value=1.3 Score=33.39 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=19.7
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHH
Q psy1505 34 KNADIYLLDDPLSAVDMH-VGKHLFED 59 (79)
Q Consensus 34 ~~p~llllDEPt~~lD~~-~~~~i~~~ 59 (79)
.+|++|++|||...++.. .+..+++.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~ 219 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHT 219 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHH
Confidence 479999999999887654 34566664
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=86.25 E-value=0.15 Score=33.60 Aligned_cols=39 Identities=3% Similarity=-0.025 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 20 gGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.|+-+|..||.++..+|+.+..+| +.++|.....+.+.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i 98 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLL 98 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH
Confidence 478999999999999999988777 789999999998854
No 487
>KOG0250|consensus
Probab=85.29 E-value=0.32 Score=40.66 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=43.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+-+....||||+|.-..++-.|. +.+++..|||-=.-+|..++...+++++
T Consensus 982 ~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv 1037 (1074)
T KOG0250|consen 982 KAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLV 1037 (1074)
T ss_pred cccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999988888774 5779999999999999999999998754
No 488
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.54 E-value=1.3 Score=34.92 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 37 DIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 37 ~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+|++|| +..||+..+..+++.+.
T Consensus 267 GvL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 267 GVLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred CeEEEec-cccCCHHHHHHHHHHHh
Confidence 4999999 79999999999988764
No 489
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=82.74 E-value=5.7 Score=32.58 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=32.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVY--KNADIYLLDDPLSAVDMHVGKHL 56 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~--~~p~llllDEPt~~lD~~~~~~i 56 (79)
|.-...+|-=+..+.+++..|- .++.++|+||+..|.++.....+
T Consensus 646 d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~ai 692 (840)
T TIGR01070 646 DDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLAL 692 (840)
T ss_pred cchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHH
Confidence 3444556766777777777764 57899999999777776655443
No 490
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=81.31 E-value=2.1 Score=30.28 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505 27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGG 64 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~ 64 (79)
++|.|-+. -.+. | |||.|+|.++...+.+.|...|
T Consensus 168 avA~aca~-~g~~-l-EPTGGIdl~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 168 AVAKACAK-HGFY-L-EPTGGIDLDNFEEIVQIALDAG 202 (236)
T ss_pred HHHHHHHH-cCCc-c-CCCCCccHHhHHHHHHHHHHcC
Confidence 34444433 3344 3 9999999999999999887544
No 491
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=1.8 Score=32.05 Aligned_cols=41 Identities=7% Similarity=0.271 Sum_probs=32.2
Q ss_pred HhcCC-CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 32 VYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 32 l~~~p-~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
++..| -++|..+|-+.|-|+.+..+.+ ++..+.+.|..+++
T Consensus 256 li~K~~~lIIIEnPEAHLHP~gQs~lg~------llA~~a~~gvqvVv 297 (374)
T COG4938 256 LIVKKKYLIIIENPEAHLHPEGQSKLGD------LLAELAARGVQVVV 297 (374)
T ss_pred eeecCCcEEEEcCchhhcCchhHHHHHH------HHHHHHhcCcEEEE
Confidence 34444 6788999999999999999999 56777777777664
No 492
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=79.38 E-value=1.1 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCc
Q psy1505 27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGI 65 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~ 65 (79)
++|.|-+ +-.+.+ |||.|+|.++...+.+.|.+.|.
T Consensus 168 avAkA~a-~~g~~l--EPTGGIdl~N~~~I~~i~l~aGv 203 (218)
T PF07071_consen 168 AVAKACA-RNGFTL--EPTGGIDLDNFEEIVKICLDAGV 203 (218)
T ss_dssp HHHHHHH-HCT-EE--EEBSS--TTTHHHHHHHHHHTT-
T ss_pred HHHHHHH-HcCcee--CCcCCcCHHHHHHHHHHHHHcCC
Confidence 3444442 346666 99999999999999998876553
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.44 E-value=8.1 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
..........++.++++||.-.. ++.....+.+.
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~ 107 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRV 107 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHH
Confidence 44456666778999999998765 44445555553
No 494
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.34 E-value=8 Score=29.31 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHh
Q psy1505 26 LDIFKAVYKNADIYLLDDP-LSAVDMHVGKHLFEDC 60 (79)
Q Consensus 26 l~iaral~~~p~llllDEP-t~~lD~~~~~~i~~~~ 60 (79)
+.-.+.-+.++++|++||. +.+.+...+..+++++
T Consensus 197 ~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~ 232 (450)
T PRK14087 197 IEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIF 232 (450)
T ss_pred HHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHH
Confidence 3344555688999999999 4456677778887753
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=75.55 E-value=0.91 Score=29.84 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=31.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHV 52 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~ 52 (79)
..+.+..+.|.|+++...+ .+.+++++|+|.|+.+.++..
T Consensus 76 ~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 76 SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred CEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 3456677888888776555 567899999999999998644
No 496
>PRK06893 DNA replication initiation factor; Validated
Probab=69.77 E-value=6.9 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.4
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHH
Q psy1505 33 YKNADIYLLDDPLSAV-DMHVGKHLFED 59 (79)
Q Consensus 33 ~~~p~llllDEPt~~l-D~~~~~~i~~~ 59 (79)
+.+++++++||..... +......++++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l 116 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDL 116 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHH
Confidence 3578999999998754 55555566664
No 497
>PRK08181 transposase; Validated
Probab=69.33 E-value=9.6 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=22.5
Q ss_pred hcCCCEEEEeCC-CCCCCHHHHHHHHHHh
Q psy1505 33 YKNADIYLLDDP-LSAVDMHVGKHLFEDC 60 (79)
Q Consensus 33 ~~~p~llllDEP-t~~lD~~~~~~i~~~~ 60 (79)
+.++++|++||. ....+......+++++
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~li 193 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELI 193 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHH
Confidence 468999999999 5567887778888864
No 498
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=64.24 E-value=22 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHh
Q psy1505 27 DIFKAVYKNADIYLLDD----------PLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 27 ~iaral~~~p~llllDE----------Pt~~lD~~~~~~i~~~~ 60 (79)
.+..|....|.++++|| +.+.++......++.++
T Consensus 263 lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~l 306 (733)
T TIGR01243 263 IFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLM 306 (733)
T ss_pred HHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHh
Confidence 44456667899999999 55666666677777643
No 499
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=64.02 E-value=8.9 Score=23.16 Aligned_cols=42 Identities=17% Similarity=-0.113 Sum_probs=28.2
Q ss_pred CcCCCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 14 KKKKKKKKKKNLLDIFKAV-----YKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral-----~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+...+|+++.++....... ...|+++ |++++|.....++++.
T Consensus 119 K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~ 165 (170)
T cd01876 119 KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRAL 165 (170)
T ss_pred chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHH
Confidence 3455677877766555442 3345555 8899998888888874
No 500
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.50 E-value=26 Score=26.23 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHh
Q psy1505 28 IFKAVYKNADIYLLDD----------PLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 28 iaral~~~p~llllDE----------Pt~~lD~~~~~~i~~~~ 60 (79)
+..|....|.++++|| +.++.|......+.+++
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL 273 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELL 273 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHH
Confidence 4445567899999999 44566766666666643
Done!