Query psy1505
Match_columns 79
No_of_seqs 145 out of 1716
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:08:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 99.9 1.1E-22 3.9E-27 138.6 7.0 50 11-60 139-188 (235)
2 1g6h_A High-affinity branched- 99.9 1.7E-22 5.8E-27 139.1 7.7 65 9-73 145-212 (257)
3 3gfo_A Cobalt import ATP-bindi 99.9 1.6E-22 5.4E-27 141.3 7.2 52 9-60 135-186 (275)
4 2pcj_A ABC transporter, lipopr 99.9 1.5E-22 5.1E-27 137.1 6.7 52 9-60 132-183 (224)
5 1b0u_A Histidine permease; ABC 99.9 2.2E-22 7.7E-27 139.1 7.6 52 9-60 144-196 (262)
6 1ji0_A ABC transporter; ATP bi 99.9 3.1E-22 1.1E-26 136.7 7.7 52 9-60 131-182 (240)
7 2olj_A Amino acid ABC transpor 99.9 3.1E-22 1.1E-26 139.0 7.7 52 9-60 151-202 (263)
8 3tui_C Methionine import ATP-b 99.9 2.7E-22 9.4E-27 145.4 7.5 52 9-60 155-206 (366)
9 1vpl_A ABC transporter, ATP-bi 99.9 5.6E-22 1.9E-26 137.1 7.8 52 9-60 138-189 (256)
10 2yz2_A Putative ABC transporte 99.9 7.6E-22 2.6E-26 136.6 7.8 65 9-73 130-197 (266)
11 2d2e_A SUFC protein; ABC-ATPas 99.9 5.1E-22 1.7E-26 136.3 6.8 65 9-73 134-202 (250)
12 3fvq_A Fe(3+) IONS import ATP- 99.9 7E-22 2.4E-26 142.9 7.9 51 9-59 130-180 (359)
13 2nq2_C Hypothetical ABC transp 99.9 7E-22 2.4E-26 136.2 7.4 52 9-60 120-171 (253)
14 2onk_A Molybdate/tungstate ABC 99.9 3.6E-22 1.2E-26 136.9 5.5 52 9-60 118-169 (240)
15 2ihy_A ABC transporter, ATP-bi 99.9 8.3E-22 2.8E-26 137.7 6.6 66 9-74 153-223 (279)
16 2zu0_C Probable ATP-dependent 99.8 1.8E-21 6E-26 134.9 7.8 64 10-73 156-223 (267)
17 3rlf_A Maltose/maltodextrin im 99.8 1.3E-21 4.4E-26 142.4 7.2 52 9-60 125-176 (381)
18 1z47_A CYSA, putative ABC-tran 99.8 1.8E-21 6.3E-26 140.4 7.3 52 9-60 137-188 (355)
19 4g1u_C Hemin import ATP-bindin 99.8 1.6E-21 5.6E-26 135.3 6.1 52 9-60 133-190 (266)
20 2yyz_A Sugar ABC transporter, 99.8 2.7E-21 9.1E-26 139.6 7.3 52 9-60 125-176 (359)
21 2ixe_A Antigen peptide transpo 99.8 3.3E-21 1.1E-25 133.9 7.3 50 11-60 150-199 (271)
22 1g29_1 MALK, maltose transport 99.8 2.9E-21 9.9E-26 139.8 7.3 52 9-60 131-182 (372)
23 3d31_A Sulfate/molybdate ABC t 99.8 2.2E-21 7.6E-26 139.5 6.5 52 9-60 119-170 (348)
24 1oxx_K GLCV, glucose, ABC tran 99.8 1.9E-21 6.5E-26 139.9 6.0 52 9-60 132-183 (353)
25 2ff7_A Alpha-hemolysin translo 99.8 4.2E-21 1.4E-25 131.8 7.2 62 12-73 140-203 (247)
26 2qi9_C Vitamin B12 import ATP- 99.8 3.6E-21 1.2E-25 132.6 6.6 52 9-60 118-176 (249)
27 2it1_A 362AA long hypothetical 99.8 2.4E-21 8.4E-26 140.0 5.5 52 9-60 125-176 (362)
28 1sgw_A Putative ABC transporte 99.8 2E-21 6.8E-26 131.5 4.5 49 12-60 128-176 (214)
29 1v43_A Sugar-binding transport 99.8 3.3E-21 1.1E-25 139.7 5.9 52 9-60 133-184 (372)
30 2ghi_A Transport protein; mult 99.8 1.4E-20 4.7E-25 130.0 7.7 62 12-73 150-213 (260)
31 2cbz_A Multidrug resistance-as 99.8 1.9E-20 6.6E-25 127.7 7.6 50 11-60 121-170 (237)
32 2pze_A Cystic fibrosis transme 99.8 3.7E-20 1.3E-24 125.7 8.2 48 12-59 125-172 (229)
33 2pjz_A Hypothetical protein ST 99.8 2.6E-20 8.9E-25 129.3 7.4 66 9-74 120-185 (263)
34 1mv5_A LMRA, multidrug resista 99.8 5.5E-21 1.9E-25 130.5 3.8 49 12-60 134-182 (243)
35 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 5.4E-20 1.8E-24 118.7 6.9 50 11-60 51-106 (148)
36 1yqt_A RNAse L inhibitor; ATP- 99.8 4.2E-20 1.4E-24 138.4 7.2 52 9-60 150-201 (538)
37 3bk7_A ABC transporter ATP-bin 99.8 4.9E-20 1.7E-24 139.9 7.4 52 9-60 220-271 (607)
38 3ozx_A RNAse L inhibitor; ATP 99.8 5.9E-20 2E-24 137.8 6.8 52 9-60 377-428 (538)
39 3nh6_A ATP-binding cassette SU 99.8 1.1E-19 3.9E-24 128.7 7.5 50 12-61 185-234 (306)
40 3j16_B RLI1P; ribosome recycli 99.8 2.1E-19 7E-24 136.7 8.6 52 9-60 213-264 (608)
41 3j16_B RLI1P; ribosome recycli 99.8 1E-19 3.4E-24 138.4 6.6 52 9-60 459-510 (608)
42 3ux8_A Excinuclease ABC, A sub 99.8 8.2E-20 2.8E-24 138.7 6.1 50 11-60 196-247 (670)
43 3ozx_A RNAse L inhibitor; ATP 99.8 1.9E-19 6.4E-24 135.1 7.6 52 9-60 130-181 (538)
44 2bbs_A Cystic fibrosis transme 99.8 2.7E-19 9.3E-24 125.7 7.7 47 13-59 155-201 (290)
45 1yqt_A RNAse L inhibitor; ATP- 99.8 2.8E-19 9.4E-24 133.9 7.1 52 9-60 393-444 (538)
46 3gd7_A Fusion complex of cysti 99.8 1.9E-19 6.4E-24 131.1 5.4 65 9-73 136-213 (390)
47 3bk7_A ABC transporter ATP-bin 99.8 3.7E-19 1.3E-23 135.1 7.1 52 9-60 463-514 (607)
48 3ux8_A Excinuclease ABC, A sub 99.8 4.1E-19 1.4E-23 134.8 7.4 51 10-60 536-589 (670)
49 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 7.2E-19 2.5E-23 126.1 7.4 49 12-60 274-328 (365)
50 3b60_A Lipid A export ATP-bind 99.8 1E-18 3.5E-23 131.1 7.8 62 12-73 475-538 (582)
51 3qf4_A ABC transporter, ATP-bi 99.8 1.4E-18 4.9E-23 130.8 8.1 62 12-73 474-537 (587)
52 2yl4_A ATP-binding cassette SU 99.8 1.3E-18 4.5E-23 130.7 7.9 60 14-73 480-541 (595)
53 3b5x_A Lipid A export ATP-bind 99.8 1.1E-18 3.8E-23 130.9 7.4 50 12-61 475-524 (582)
54 4a82_A Cystic fibrosis transme 99.7 1.5E-18 5.1E-23 130.2 6.7 62 13-74 473-536 (578)
55 3qf4_B Uncharacterized ABC tra 99.7 5E-18 1.7E-22 127.9 8.1 58 16-73 490-549 (598)
56 2iw3_A Elongation factor 3A; a 99.7 4.7E-18 1.6E-22 134.9 6.0 66 9-74 540-605 (986)
57 3pih_A Uvrabc system protein A 99.7 1.2E-17 4.2E-22 131.7 7.6 50 11-60 799-851 (916)
58 3pih_A Uvrabc system protein A 99.7 1.1E-17 3.8E-22 131.9 6.2 61 11-77 458-520 (916)
59 3kta_B Chromosome segregation 99.7 7.2E-17 2.5E-21 106.3 6.9 51 10-60 57-111 (173)
60 2iw3_A Elongation factor 3A; a 99.7 3.1E-17 1.1E-21 130.2 6.0 64 11-74 895-958 (986)
61 3qkt_A DNA double-strand break 99.7 5.7E-17 2E-21 114.6 6.6 51 10-60 241-297 (339)
62 2r6f_A Excinuclease ABC subuni 99.7 7.5E-17 2.6E-21 127.9 7.0 51 10-60 838-891 (972)
63 1e69_A Chromosome segregation 99.7 1.2E-16 4.1E-21 112.2 7.0 51 11-61 213-267 (322)
64 2vf7_A UVRA2, excinuclease ABC 99.7 6.7E-17 2.3E-21 126.7 6.1 50 11-60 724-776 (842)
65 2ygr_A Uvrabc system protein A 99.7 1.2E-16 4.1E-21 127.0 7.3 62 11-78 515-578 (993)
66 3g5u_A MCG1178, multidrug resi 99.7 1.6E-16 5.5E-21 128.0 8.0 61 13-73 522-584 (1284)
67 2r6f_A Excinuclease ABC subuni 99.7 9.1E-17 3.1E-21 127.4 6.1 62 11-78 498-561 (972)
68 2ygr_A Uvrabc system protein A 99.7 1.3E-16 4.6E-21 126.7 7.0 51 10-60 856-909 (993)
69 3g5u_A MCG1178, multidrug resi 99.6 1.3E-16 4.6E-21 128.4 6.3 59 15-73 1169-1229(1284)
70 4aby_A DNA repair protein RECN 99.6 2.6E-16 8.8E-21 112.3 7.1 44 18-61 296-341 (415)
71 2vf7_A UVRA2, excinuclease ABC 99.6 1.4E-16 4.9E-21 124.8 5.9 61 11-77 373-435 (842)
72 4f4c_A Multidrug resistance pr 99.6 2.9E-16 1E-20 126.7 5.3 61 13-73 550-612 (1321)
73 4ad8_A DNA repair protein RECN 99.6 4.1E-16 1.4E-20 115.5 5.3 50 11-60 390-442 (517)
74 4f4c_A Multidrug resistance pr 99.6 4.9E-16 1.7E-20 125.5 5.8 46 16-61 1216-1261(1321)
75 1ye8_A Protein THEP1, hypothet 99.6 4.2E-16 1.5E-20 102.3 3.3 55 10-64 69-130 (178)
76 4gp7_A Metallophosphoesterase; 99.6 6E-16 2.1E-20 100.0 1.3 40 14-53 80-119 (171)
77 1w1w_A Structural maintenance 99.5 1.4E-14 4.8E-19 104.9 6.9 50 12-61 328-381 (430)
78 2o5v_A DNA replication and rep 99.5 6.4E-15 2.2E-19 106.1 4.2 51 11-61 258-318 (359)
79 3auy_A DNA double-strand break 99.5 1.2E-13 4.2E-18 98.5 6.9 49 13-61 276-331 (371)
80 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.1E-13 3.6E-18 102.4 -0.6 47 15-62 233-286 (460)
81 3b85_A Phosphate starvation-in 99.2 1.4E-13 4.6E-18 92.5 -3.7 35 21-59 108-142 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.2 4.4E-12 1.5E-16 94.0 3.0 61 10-77 346-411 (525)
83 3thx_B DNA mismatch repair pro 98.9 1.7E-09 5.9E-14 85.6 6.1 48 9-57 727-774 (918)
84 1tq4_A IIGP1, interferon-induc 98.9 3.3E-11 1.1E-15 88.3 -4.4 43 18-60 155-209 (413)
85 3thx_A DNA mismatch repair pro 98.8 6.5E-09 2.2E-13 82.4 7.0 45 12-56 716-762 (934)
86 3sop_A Neuronal-specific septi 98.7 1.6E-10 5.5E-15 79.9 -4.6 48 8-58 89-136 (270)
87 1nlf_A Regulatory protein REPA 98.7 1.9E-08 6.5E-13 68.6 4.5 45 11-58 112-161 (279)
88 3aez_A Pantothenate kinase; tr 98.6 1.8E-10 6E-15 81.3 -6.8 39 11-49 170-208 (312)
89 2o8b_B DNA mismatch repair pro 98.6 6E-08 2E-12 77.5 5.4 46 12-58 846-892 (1022)
90 1pui_A ENGB, probable GTP-bind 98.6 1.6E-08 5.5E-13 65.1 1.4 48 12-59 144-192 (210)
91 1ewq_A DNA mismatch repair pro 98.5 4.8E-08 1.7E-12 76.1 4.1 61 13-73 631-697 (765)
92 3b9q_A Chloroplast SRP recepto 98.5 7.3E-09 2.5E-13 72.7 -0.8 40 11-54 198-239 (302)
93 1cr0_A DNA primase/helicase; R 98.5 1.9E-07 6.4E-12 63.9 5.6 45 14-59 126-178 (296)
94 2pt7_A CAG-ALFA; ATPase, prote 98.5 4.6E-08 1.6E-12 69.2 2.5 27 20-46 225-251 (330)
95 2og2_A Putative signal recogni 98.5 2.1E-08 7.2E-13 72.2 0.2 40 12-55 256-297 (359)
96 2w0m_A SSO2452; RECA, SSPF, un 98.3 1.2E-06 4.1E-11 56.6 5.2 43 17-59 103-149 (235)
97 2qnr_A Septin-2, protein NEDD5 98.2 1.4E-08 4.9E-13 70.8 -5.0 42 11-56 107-149 (301)
98 1z6g_A Guanylate kinase; struc 98.2 1.9E-09 6.6E-14 71.8 -10.3 44 16-59 121-169 (218)
99 1pzn_A RAD51, DNA repair and r 98.1 1.6E-06 5.5E-11 61.6 3.7 33 19-51 208-247 (349)
100 2i3b_A HCR-ntpase, human cance 98.1 2.1E-07 7.3E-12 61.3 -1.4 53 11-63 77-135 (189)
101 2v9p_A Replication protein E1; 98.1 2E-08 6.9E-13 71.0 -7.4 37 15-58 198-234 (305)
102 2cvh_A DNA repair and recombin 98.0 6E-06 2.1E-10 53.2 4.9 38 14-51 81-121 (220)
103 1wb9_A DNA mismatch repair pro 98.0 3.9E-06 1.3E-10 65.7 4.6 42 14-56 666-707 (800)
104 2eyu_A Twitching motility prot 98.0 1E-05 3.6E-10 55.4 5.0 32 25-59 88-119 (261)
105 2ehv_A Hypothetical protein PH 97.9 3E-06 1E-10 55.6 2.0 40 20-59 120-164 (251)
106 1znw_A Guanylate kinase, GMP k 97.9 1.6E-07 5.5E-12 61.5 -4.3 30 31-60 137-170 (207)
107 1tf7_A KAIC; homohexamer, hexa 97.8 3.6E-06 1.2E-10 62.3 0.9 48 25-78 127-180 (525)
108 2bbw_A Adenylate kinase 4, AK4 97.8 1.2E-07 4.3E-12 63.4 -6.5 44 10-60 145-193 (246)
109 1odf_A YGR205W, hypothetical 3 97.8 2.6E-07 9.1E-12 64.4 -5.6 38 12-51 129-168 (290)
110 4a74_A DNA repair and recombin 97.6 2.4E-05 8.2E-10 50.6 2.4 34 18-51 100-141 (231)
111 3asz_A Uridine kinase; cytidin 97.6 7.6E-09 2.6E-13 67.4 -14.7 50 10-59 82-142 (211)
112 3jvv_A Twitching mobility prot 97.5 0.00013 4.6E-09 52.1 5.2 30 27-59 188-217 (356)
113 2jeo_A Uridine-cytidine kinase 97.5 2.3E-06 7.7E-11 57.3 -3.9 40 11-51 110-149 (245)
114 3ec2_A DNA replication protein 97.5 0.00019 6.4E-09 45.4 5.4 28 33-60 98-126 (180)
115 2qag_C Septin-7; cell cycle, c 97.1 2.9E-05 1E-09 56.8 -1.9 41 17-57 118-162 (418)
116 2obl_A ESCN; ATPase, hydrolase 97.1 0.00019 6.5E-09 51.1 2.0 38 13-60 167-204 (347)
117 1lw7_A Transcriptional regulat 97.1 2.2E-05 7.6E-10 55.4 -2.9 47 14-60 255-311 (365)
118 2kjq_A DNAA-related protein; s 97.0 0.00041 1.4E-08 43.5 3.0 28 31-59 79-106 (149)
119 1udx_A The GTP-binding protein 97.0 0.00011 3.8E-09 53.6 0.3 38 12-53 247-284 (416)
120 1lw7_A Transcriptional regulat 96.8 0.00027 9.3E-09 49.8 0.5 29 17-45 296-329 (365)
121 1sxj_E Activator 1 40 kDa subu 96.7 0.0015 5.1E-08 44.9 3.9 29 32-61 131-159 (354)
122 2f1r_A Molybdopterin-guanine d 96.7 8.4E-06 2.9E-10 52.9 -7.2 22 17-38 103-124 (171)
123 3euj_A Chromosome partition pr 96.6 0.0026 9E-08 47.4 5.0 56 10-66 372-444 (483)
124 2dpy_A FLII, flagellum-specifi 96.6 0.00098 3.3E-08 48.8 2.5 36 15-60 256-291 (438)
125 1ls1_A Signal recognition part 96.6 0.0073 2.5E-07 41.7 6.6 41 19-59 164-205 (295)
126 2ewv_A Twitching motility prot 96.3 0.0053 1.8E-07 43.8 4.8 31 25-58 199-229 (372)
127 1rj9_A FTSY, signal recognitio 96.3 0.00055 1.9E-08 47.8 -0.3 34 18-52 203-238 (304)
128 3szr_A Interferon-induced GTP- 96.3 0.0022 7.5E-08 48.5 2.9 28 33-60 144-177 (608)
129 1n0w_A DNA repair protein RAD5 96.2 0.0074 2.5E-07 39.0 4.9 18 34-51 118-135 (243)
130 1zp6_A Hypothetical protein AT 96.1 0.001 3.5E-08 41.9 0.3 41 12-60 104-144 (191)
131 1nij_A Hypothetical protein YJ 96.1 0.00046 1.6E-08 48.1 -1.6 26 17-44 141-166 (318)
132 1vma_A Cell division protein F 95.8 0.0047 1.6E-07 43.2 2.5 31 16-46 164-197 (306)
133 2qag_B Septin-6, protein NEDD5 95.5 0.01 3.6E-07 43.6 3.4 52 17-77 161-213 (427)
134 2xau_A PRE-mRNA-splicing facto 95.3 0.0049 1.7E-07 47.8 1.3 47 12-58 185-232 (773)
135 2zr9_A Protein RECA, recombina 95.2 0.027 9.1E-07 39.9 4.8 26 23-48 125-152 (349)
136 1oix_A RAS-related protein RAB 95.0 0.012 4.2E-07 37.2 2.2 34 25-60 153-186 (191)
137 2e87_A Hypothetical protein PH 94.7 0.048 1.6E-06 38.1 4.9 50 10-60 224-274 (357)
138 4a1f_A DNAB helicase, replicat 94.5 0.034 1.2E-06 39.5 3.8 34 16-49 108-141 (338)
139 3lda_A DNA repair protein RAD5 94.2 0.046 1.6E-06 39.6 3.8 18 34-51 272-289 (400)
140 2dr3_A UPF0273 protein PH0284; 93.9 0.076 2.6E-06 34.1 4.2 18 34-51 127-146 (247)
141 2ce7_A Cell division protein F 93.7 0.11 3.7E-06 38.5 5.2 26 20-45 93-118 (476)
142 2r6a_A DNAB helicase, replicat 92.7 0.25 8.6E-06 35.6 5.8 33 15-49 293-327 (454)
143 2f9l_A RAB11B, member RAS onco 92.6 0.061 2.1E-06 33.9 2.2 33 26-60 130-162 (199)
144 2x8a_A Nuclear valosin-contain 92.4 0.00026 8.8E-09 48.5 -9.9 50 10-61 130-191 (274)
145 2qm8_A GTPase/ATPase; G protei 91.8 0.031 1.1E-06 39.2 0.0 41 16-60 209-255 (337)
146 2rcn_A Probable GTPase ENGC; Y 90.2 0.057 2E-06 38.7 0.2 23 9-32 306-328 (358)
147 3c8u_A Fructokinase; YP_612366 88.3 0.00054 1.8E-08 44.5 -10.7 31 16-46 110-141 (208)
148 2px0_A Flagellar biosynthesis 88.3 0.3 1E-05 33.6 2.6 31 24-58 173-203 (296)
149 3k1j_A LON protease, ATP-depen 87.9 0.069 2.4E-06 40.0 -0.9 45 16-61 182-226 (604)
150 2z4s_A Chromosomal replication 84.6 1.1 3.7E-05 32.3 4.0 26 34-59 193-219 (440)
151 3bh0_A DNAB-like replicative h 84.3 1.4 4.8E-05 30.2 4.4 31 18-48 134-164 (315)
152 1p9r_A General secretion pathw 84.3 0.0051 1.7E-07 44.8 -8.4 25 14-40 290-314 (418)
153 2ewv_A Twitching motility prot 83.5 0.0012 4E-08 47.2 -11.9 32 18-51 284-317 (372)
154 2ius_A DNA translocase FTSK; n 83.2 0.018 6E-07 43.2 -6.0 34 17-50 268-312 (512)
155 3b9p_A CG5977-PA, isoform A; A 82.3 1.3 4.4E-05 29.4 3.4 31 19-49 97-127 (297)
156 1s96_A Guanylate kinase, GMP k 82.1 2.7 9.1E-05 27.5 4.9 28 29-61 101-128 (219)
157 2bdt_A BH3686; alpha-beta prot 79.8 0.0059 2E-07 38.5 -8.5 37 19-59 96-138 (189)
158 1fnn_A CDC6P, cell division co 78.3 2.1 7.2E-05 29.0 3.5 26 34-60 124-149 (389)
159 1iy2_A ATP-dependent metallopr 72.5 0.0058 2E-07 41.1 -10.5 49 9-59 161-221 (278)
160 1in4_A RUVB, holliday junction 72.4 0.15 5.1E-06 35.2 -3.6 19 11-29 156-174 (334)
161 1u94_A RECA protein, recombina 72.0 7.6 0.00026 27.3 5.2 27 23-49 127-155 (356)
162 2qtf_A Protein HFLX, GTP-bindi 70.9 0.85 2.9E-05 32.3 -0.0 42 14-59 301-347 (364)
163 1lvg_A Guanylate kinase, GMP k 68.8 0.028 9.6E-07 36.2 -7.5 28 31-58 120-147 (198)
164 3kl4_A SRP54, signal recogniti 67.5 5.3 0.00018 29.1 3.6 33 27-59 171-206 (433)
165 1ixz_A ATP-dependent metallopr 66.5 0.0065 2.2E-07 40.1 -11.1 50 9-60 137-198 (254)
166 2gza_A Type IV secretion syste 65.4 3.9 0.00013 28.6 2.5 28 19-46 236-263 (361)
167 1l8q_A Chromosomal replication 64.5 8.2 0.00028 25.9 3.9 27 33-59 96-123 (324)
168 1ni3_A YCHF GTPase, YCHF GTP-b 63.5 0.11 3.6E-06 37.7 -6.0 25 35-59 139-165 (392)
169 3t34_A Dynamin-related protein 62.8 4.1 0.00014 28.1 2.2 33 17-49 154-186 (360)
170 1g5t_A COB(I)alamin adenosyltr 62.4 6.7 0.00023 25.7 3.0 38 23-60 106-147 (196)
171 2z43_A DNA repair and recombin 60.7 5.2 0.00018 27.3 2.4 26 24-49 189-217 (324)
172 3e70_C DPA, signal recognition 59.4 12 0.0004 26.0 4.1 31 22-53 230-260 (328)
173 3m6y_A 4-hydroxy-2-oxoglutarat 58.2 2.4 8.4E-05 29.5 0.3 24 41-64 212-235 (275)
174 2r8r_A Sensor protein; KDPD, P 57.1 6.7 0.00023 26.4 2.4 19 28-46 77-95 (228)
175 3m0z_A Putative aldolase; MCSG 56.1 2.3 8E-05 29.2 -0.0 35 27-64 178-212 (249)
176 2yv5_A YJEQ protein; hydrolase 54.8 0.42 1.4E-05 32.8 -4.0 22 9-30 279-300 (302)
177 1v5w_A DMC1, meiotic recombina 53.5 11 0.00039 25.9 3.2 27 24-50 204-234 (343)
178 2q6t_A DNAB replication FORK h 52.4 45 0.0016 23.6 6.3 33 16-48 263-295 (444)
179 1b9m_A Protein (mode); DNA-bin 51.8 0.75 2.6E-05 30.4 -3.0 29 10-38 66-94 (265)
180 1xp8_A RECA protein, recombina 50.9 57 0.002 22.9 6.5 26 23-48 138-165 (366)
181 1svm_A Large T antigen; AAA+ f 43.8 0.17 5.9E-06 36.3 -7.6 37 10-46 275-312 (377)
182 1jcn_A Inosine monophosphate d 42.9 4.3 0.00015 29.7 -0.4 20 30-51 28-47 (514)
183 3hr8_A Protein RECA; alpha and 42.5 86 0.0029 22.0 6.7 26 24-49 126-153 (356)
184 3bos_A Putative DNA replicatio 41.8 11 0.00037 23.4 1.4 26 34-59 103-129 (242)
185 3szr_A Interferon-induced GTP- 41.8 9.4 0.00032 28.7 1.3 38 15-52 162-200 (608)
186 3bgw_A DNAB-like replicative h 39.3 44 0.0015 24.0 4.5 29 18-46 263-291 (444)
187 2qby_A CDC6 homolog 1, cell di 37.8 18 0.0006 24.1 2.1 24 35-58 128-154 (386)
188 2w58_A DNAI, primosome compone 35.4 9 0.00031 23.6 0.3 11 34-44 114-124 (202)
189 4dgf_A Sulfate transporter sul 34.9 68 0.0023 18.6 4.3 39 34-78 50-89 (135)
190 4fcw_A Chaperone protein CLPB; 33.1 54 0.0018 21.3 3.9 34 27-61 110-144 (311)
191 1sxj_D Activator 1 41 kDa subu 32.9 32 0.0011 22.8 2.7 26 35-61 133-158 (353)
192 3i33_A Heat shock-related 70 k 32.3 14 0.00049 25.4 0.9 33 15-47 166-198 (404)
193 3h4m_A Proteasome-activating n 32.3 50 0.0017 21.2 3.6 19 27-45 102-120 (285)
194 2kln_A Probable sulphate-trans 32.1 26 0.00088 20.4 2.0 37 35-77 47-84 (130)
195 3ny7_A YCHM protein, sulfate t 31.7 70 0.0024 18.2 3.9 38 34-78 44-82 (118)
196 1gml_A T-complex protein 1 sub 30.1 56 0.0019 20.5 3.4 16 33-48 25-40 (178)
197 1njg_A DNA polymerase III subu 30.0 43 0.0015 20.1 2.8 25 35-60 126-150 (250)
198 3llo_A Prestin; STAS domain, c 29.8 86 0.0029 18.2 4.9 38 35-78 63-101 (143)
199 2r62_A Cell division protease 29.1 34 0.0011 21.9 2.3 19 27-45 95-113 (268)
200 4gni_A Putative heat shock pro 28.9 18 0.0006 25.1 0.9 34 14-47 157-190 (409)
201 3f2k_A Histone-lysine N-methyl 27.5 33 0.0011 22.0 2.0 35 15-49 3-45 (226)
202 2qz4_A Paraplegin; AAA+, SPG7, 25.1 81 0.0028 19.8 3.6 20 28-47 91-110 (262)
203 1yuw_A Heat shock cognate 71 k 24.9 20 0.00067 26.5 0.6 33 15-47 147-179 (554)
204 2ka5_A Putative anti-sigma fac 24.9 1E+02 0.0036 17.6 4.6 28 32-59 48-76 (125)
205 3oiz_A Antisigma-factor antago 24.7 57 0.0019 18.1 2.5 39 34-78 42-81 (99)
206 3io5_A Recombination and repai 24.1 1.9E+02 0.0066 20.4 6.1 28 21-48 93-124 (333)
207 2orv_A Thymidine kinase; TP4A 24.0 67 0.0023 21.6 3.1 16 34-49 89-104 (234)
208 1a6d_A Thermosome (alpha subun 24.0 46 0.0016 24.7 2.4 12 33-44 231-242 (545)
209 3qfu_A 78 kDa glucose-regulate 23.8 25 0.00086 24.0 0.9 33 15-47 161-193 (394)
210 3d8b_A Fidgetin-like protein 1 23.7 82 0.0028 21.5 3.6 19 26-44 167-185 (357)
211 1sbo_A Putative anti-sigma fac 23.7 95 0.0033 16.7 5.2 44 28-77 35-80 (110)
212 1th8_B Anti-sigma F factor ant 22.3 86 0.003 17.1 3.0 43 28-76 34-78 (116)
213 2qgz_A Helicase loader, putati 21.8 24 0.00081 23.9 0.5 12 33-44 212-223 (308)
214 1a6d_B Thermosome (beta subuni 21.3 68 0.0023 23.8 2.9 12 33-44 232-243 (543)
215 2b8t_A Thymidine kinase; deoxy 21.1 1E+02 0.0035 20.1 3.5 19 35-54 89-107 (223)
216 1qb5_D Protein (heat labIle en 20.9 76 0.0026 18.3 2.4 35 12-47 53-87 (99)
217 3llm_A ATP-dependent RNA helic 20.5 1.5E+02 0.0052 18.6 4.2 34 19-54 162-196 (235)
218 3kyj_B CHEY6 protein, putative 20.5 1.1E+02 0.0039 17.0 3.3 16 35-50 60-75 (145)
219 4b9q_A Chaperone protein DNAK; 20.4 31 0.0011 25.7 0.9 34 14-47 142-175 (605)
220 2kho_A Heat shock protein 70; 20.3 28 0.00095 26.0 0.6 33 15-47 143-175 (605)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=1.1e-22 Score=138.63 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=47.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 139 ~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l 188 (235)
T 3tif_A 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL 188 (235)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999964
No 2
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.87 E-value=1.7e-22 Score=139.12 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=54.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG 73 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g 73 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++. +.+.+..+.+|+
T Consensus 145 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999643 224444444544
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.87 E-value=1.6e-22 Score=141.30 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus 135 ~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999964
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.87 E-value=1.5e-22 Score=137.10 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 132 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 183 (224)
T 2pcj_A 132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183 (224)
T ss_dssp TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999954
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.87 E-value=2.2e-22 Score=139.12 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=49.2
Q ss_pred HH-hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KK-KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~-~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+. .++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 144 ~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 196 (262)
T 1b0u_A 144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 196 (262)
T ss_dssp HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 45 78999999999999999999999999999999999999999999999964
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=3.1e-22 Score=136.69 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 182 (240)
T 1ji0_A 131 ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182 (240)
T ss_dssp TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999964
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.87 E-value=3.1e-22 Score=138.96 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 151 ~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.86 E-value=2.7e-22 Score=145.42 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=49.6
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++++|.+|||||||||+|||||+.+|++|||||||++||+..+..+++++
T Consensus 155 ~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999954
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=5.6e-22 Score=137.11 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 138 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 189 (256)
T 1vpl_A 138 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189 (256)
T ss_dssp GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999954
No 10
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.86 E-value=7.6e-22 Score=136.58 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=54.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG 73 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g 73 (79)
++.++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++. ..+.+..+.+|+
T Consensus 130 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999643 224444444544
No 11
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.86 E-value=5.1e-22 Score=136.30 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=50.3
Q ss_pred HHhccCcCC-CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505 9 KKKKKKKKK-KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG 73 (79)
Q Consensus 9 ~~~~~~~~~-LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g 73 (79)
+..++++.+ |||||||||+|||||+.+|+++||||||+|||+..+..+++++. ..+.+..+.+|+
T Consensus 134 ~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp GGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred hHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456888999 99999999999999999999999999999999999999999653 223444444554
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.86 E-value=7e-22 Score=142.87 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=48.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+++.
T Consensus 130 ~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~ 180 (359)
T 3fvq_A 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180 (359)
T ss_dssp GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999874
No 13
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=7e-22 Score=136.20 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 120 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 171 (253)
T 2nq2_C 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171 (253)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHH
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999964
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=3.6e-22 Score=136.87 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 118 ~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l 169 (240)
T 2onk_A 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999964
No 15
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=8.3e-22 Score=137.65 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcch--hhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIP--MINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~--~l~~~g~ 74 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++. ..+.+. .+.+|+.
T Consensus 153 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~ 223 (279)
T 2ihy_A 153 AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223 (279)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH
Confidence 45789999999999999999999999999999999999999999999999653 224444 5555544
No 16
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.85 E-value=1.8e-21 Score=134.93 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=52.2
Q ss_pred HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505 10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG 73 (79)
Q Consensus 10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g 73 (79)
..++++. +|||||||||+|||||+.+|+++||||||+|||+..+..+++++. +.+.+..+.+|+
T Consensus 156 ~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 4567787 599999999999999999999999999999999999999999643 223444444443
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.85 E-value=1.3e-21 Score=142.44 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 125 ~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l 176 (381)
T 3rlf_A 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176 (381)
T ss_dssp GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999853
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.84 E-value=1.8e-21 Score=140.38 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 137 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999854
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=1.6e-21 Score=135.28 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+. +|+++||||||+|||+..+..+++++
T Consensus 133 ~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l 190 (266)
T 4g1u_C 133 ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190 (266)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 45788999999999999999999999 99999999999999999999999964
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.84 E-value=2.7e-21 Score=139.64 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 125 ~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 176 (359)
T 2yyz_A 125 NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176 (359)
T ss_dssp GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999864
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.84 E-value=3.3e-21 Score=133.92 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=47.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 199 (271)
T 2ixe_A 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199 (271)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999964
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.84 E-value=2.9e-21 Score=139.83 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 131 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999854
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.84 E-value=2.2e-21 Score=139.50 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 119 ~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l 170 (348)
T 3d31_A 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170 (348)
T ss_dssp TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999964
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.84 E-value=1.9e-21 Score=139.89 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 132 ~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 132 HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999964
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.84 E-value=4.2e-21 Score=131.78 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=50.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.+. ..+.+..+.+|+
T Consensus 140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~ 203 (247)
T 2ff7_A 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203 (247)
T ss_dssp STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45678999999999999999999999999999999999999999999643 223344444443
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.84 E-value=3.6e-21 Score=132.63 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNAD-------IYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~-------llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.++++.+|||||||||+|||||+.+|+ ++||||||+|||+..+..+.+++
T Consensus 118 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 46788999999999999999999999999 99999999999999999999964
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=2.4e-21 Score=139.96 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 125 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 176 (362)
T 2it1_A 125 KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL 176 (362)
T ss_dssp TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999964
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=2e-21 Score=131.54 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=46.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus 128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999964
No 29
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.83 E-value=3.3e-21 Score=139.66 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus 133 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 184 (372)
T 1v43_A 133 ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184 (372)
T ss_dssp GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999864
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.83 E-value=1.4e-20 Score=130.04 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=51.6
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+. ..+.+..+.+|+
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~ 213 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 46788999999999999999999999999999999999999999998653 223444445554
No 31
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=127.69 Aligned_cols=50 Identities=52% Similarity=0.799 Sum_probs=47.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus 121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999965
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=3.7e-20 Score=125.66 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=45.1
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+.++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.
T Consensus 125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999995
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=2.6e-20 Score=129.26 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=55.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++.+..-+..+.+|+.
T Consensus 120 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~ 185 (263)
T 2pjz_A 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHEL 185 (263)
T ss_dssp GGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCG
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 557899999999999999999999999999999999999999999999997652211444556653
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.81 E-value=5.5e-21 Score=130.52 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=45.5
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 182 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999998854
No 35
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.81 E-value=5.4e-20 Score=118.69 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=46.4
Q ss_pred hccCcCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIF------KAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~ia------ral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+||++|| ||++.+|+++||||||+|||+..+..+.+.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l 106 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 106 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHH
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 5788999999999999876 8999999999999999999999999999864
No 36
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=4.2e-20 Score=138.38 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+++++
T Consensus 150 ~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 201 (538)
T 1yqt_A 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201 (538)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999964
No 37
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.80 E-value=4.9e-20 Score=139.95 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+++++
T Consensus 220 ~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 271 (607)
T 3bk7_A 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271 (607)
T ss_dssp TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999964
No 38
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=5.9e-20 Score=137.83 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus 377 ~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l 428 (538)
T 3ozx_A 377 RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428 (538)
T ss_dssp GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999954
No 39
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.80 E-value=1.1e-19 Score=128.66 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=45.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+.++.+|||||||||+|||||+.+|+++||||||++||+.....+++.+.
T Consensus 185 ~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~ 234 (306)
T 3nh6_A 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA 234 (306)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 45567999999999999999999999999999999999999999998653
No 40
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-19 Score=136.69 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 213 ~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l 264 (608)
T 3j16_B 213 NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264 (608)
T ss_dssp GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred chhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999953
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1e-19 Score=138.38 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.+++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999854
No 42
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=8.2e-20 Score=138.70 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=47.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..+++++
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l 247 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL 247 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 578999999999999999999999998 99999999999999999999953
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.9e-19 Score=135.13 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus 130 ~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.78 E-value=2.7e-19 Score=125.66 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=43.1
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999995
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=2.8e-19 Score=133.95 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=49.4
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999964
No 46
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=131.13 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHhccCcCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505 9 KKKKKKKKK-----------KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG 73 (79)
Q Consensus 9 ~~~~~~~~~-----------LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g 73 (79)
++.+++|.+ |||||||||+|||||+.+|+++||||||++||+..+..+.+.+.+ .+.+..+.+|.
T Consensus 136 ~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd 213 (390)
T 3gd7_A 136 SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213 (390)
T ss_dssp HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 567888888 999999999999999999999999999999999999999987542 23334444443
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=3.7e-19 Score=135.12 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999954
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.77 E-value=4.1e-19 Score=134.84 Aligned_cols=51 Identities=12% Similarity=0.239 Sum_probs=46.9
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||||||+|||||+.+| ++|||||||+|||+..+..+++++
T Consensus 536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l 589 (670)
T 3ux8_A 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 589 (670)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999887 599999999999999999999954
No 49
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.77 E-value=7.2e-19 Score=126.10 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=46.1
Q ss_pred ccCcCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVY------KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~------~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
++++.+|||||+|||+||+||+ .+|+++||||||++||+..+..+++.+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l 328 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVL 328 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 6789999999999999999999 799999999999999999999999953
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.76 E-value=1e-18 Score=131.07 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=50.8
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
+..+.+||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 538 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 34568999999999999999999999999999999999999999998653 224444444443
No 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=1.4e-18 Score=130.76 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=51.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
+.++.+||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 537 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 56778999999999999999999999999999999999999999999643 223344444443
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.76 E-value=1.3e-18 Score=130.75 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=49.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
++.+||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 541 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR 541 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 448999999999999999999999999999999999999999998653 123344444443
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.76 E-value=1.1e-18 Score=130.86 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=45.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+.+||||||||++||||++.+|++++|||||++||+.....+.+.+.
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999998643
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.75 E-value=1.5e-18 Score=130.20 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=50.3
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI 74 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~ 74 (79)
.++.+||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|..
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 536 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSG
T ss_pred cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 4456899999999999999999999999999999999999999988653 2234444455543
No 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=5e-18 Score=127.92 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
.+||||||||++||||++.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 549 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7899999999999999999999999999999999999999988643 223444444443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.72 E-value=4.7e-18 Score=134.90 Aligned_cols=66 Identities=26% Similarity=0.202 Sum_probs=57.0
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
+..++++++||||||||++|||||+.+|++|||||||++||+..+..+.+++...+.+..+.+|+.
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl 605 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS 605 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 467899999999999999999999999999999999999999999999997655445555556543
No 57
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=1.2e-17 Score=131.72 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=46.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+|||+|||+|+.+| +++||||||+|||+..+..+++.+
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL 851 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL 851 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999875 799999999999999999999953
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=1.1e-17 Score=131.94 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=52.2
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++.+|||||+|||+|||+|+.+|+ ++||||||+|||+.....++++ +..+.+.|.|++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~------L~~L~~~G~Tvi 520 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKT------LKKLRDLGNTVI 520 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHH------HHHTTTTTCEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence 578999999999999999999999887 9999999999999999999995 444444455544
No 59
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.68 E-value=7.2e-17 Score=106.34 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=45.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..+++.+||||||||++||++++. +|+++||||||++||+.+...+.+++
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l 111 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI 111 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 4567889999999999999999974 46999999999999999999999964
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=3.1e-17 Score=130.21 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=54.9
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~ 74 (79)
.++++++|||||||||+|||||+.+|++|||||||+|||+.....+.+.+.+.+....+.+|+.
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~ 958 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCH
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 5788999999999999999999999999999999999999999999997654444455556653
No 61
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.68 E-value=5.7e-17 Score=114.64 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred HhccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+| |+++|++++.+|+++||||||++||+..+..+.+++
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l 297 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 297 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHH
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 357889999999999 678888888999999999999999999999999864
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.67 E-value=7.5e-17 Score=127.88 Aligned_cols=51 Identities=12% Similarity=0.239 Sum_probs=47.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||++|+.+| +++||||||+|||+..+..+++++
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL 891 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 891 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999865 999999999999999999999953
No 63
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.66 E-value=1.2e-16 Score=112.17 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=46.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+.++.+||+||+||++||++|+ .+|+++||||||++||+..+..+++++.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 267 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLK 267 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHH
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 56778999999999999999997 5789999999999999999999999653
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.66 E-value=6.7e-17 Score=126.68 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=46.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~---p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++++.+|||||+|||+||++|+.+ |+++||||||+|||+..+..+++++
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL 776 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL 776 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999996 7999999999999999999999953
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.66 E-value=1.2e-16 Score=126.98 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=53.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~--p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.++++.+|||||+|||+||++|..+ |+++||||||++||+.....+++. +..+.+.|.|||+
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~------L~~Lr~~G~TVIv 578 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIET------LTRLRDLGNTLIV 578 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHH------HHHHHHTTCEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHH------HHHHHHcCCEEEE
Confidence 5889999999999999999999999 599999999999999999999994 5555555666553
No 66
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.66 E-value=1.6e-16 Score=128.00 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=49.0
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
..+.+|||||||||+||||++.+|+++||||||++||++....+.+.+. ..+.+..+.+|.
T Consensus 522 ~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 584 (1284)
T 3g5u_A 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584 (1284)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4566899999999999999999999999999999999999888887542 223344444443
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.65 E-value=9.1e-17 Score=127.43 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=53.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.++++.+|||||+|||+||++|..+| +++||||||++||+.....+++ .+..+.+.|.|||+
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~------~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA------TLKSMRDLGNTLIV 561 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH------HHHHHHTTTCEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH------HHHHHHhCCCEEEE
Confidence 58899999999999999999999985 9999999999999999999999 45555555666554
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.65 E-value=1.3e-16 Score=126.68 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=47.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+|||||+|||+||++|+.+| +++||||||+|||+..+..+++++
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL 909 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVI 909 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999865 999999999999999999999953
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.65 E-value=1.3e-16 Score=128.44 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=48.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
..+|||||||||+|||||+.+|+++||||||++||+.....+.+.+. ..+.+..+.+|.
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 46899999999999999999999999999999999999999988653 223444444444
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.65 E-value=2.6e-16 Score=112.32 Aligned_cols=44 Identities=7% Similarity=-0.041 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 18 KKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
|||||+|||+||++|+.+| ++|||||||++||+..+..+.+.+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~ 341 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLS 341 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 5999999999999999999 9999999999999999999999643
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.64 E-value=1.4e-16 Score=124.82 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=52.6
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
.++++.+|||||+|||+||++|+.+| .++||||||++||+.....+++. +..+.+.|.|+|
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~------l~~L~~~G~TVI 435 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA------LENLKRGGNSLF 435 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH------HHHHHTTTCEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH------HHHHHHcCCEEE
Confidence 58899999999999999999999999 59999999999999999999994 444545555554
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.62 E-value=2.9e-16 Score=126.73 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=48.4
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG 73 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g 73 (79)
....+||||||||++||||++.+|+++||||||++||++....+.+.+. ..+.+..+.+|.
T Consensus 550 e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 550 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 3456899999999999999999999999999999999998777777543 234444444543
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.61 E-value=4.1e-16 Score=115.50 Aligned_cols=50 Identities=6% Similarity=-0.059 Sum_probs=46.4
Q ss_pred hccCcCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 11 KKKKKKKK-KKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 11 ~~~~~~~L-SgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+++.+| ||||+|||+||++++.+| +++||||||+|||+.....+.+++
T Consensus 390 ~~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l 442 (517)
T 4ad8_A 390 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL 442 (517)
T ss_dssp CCCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHH
T ss_pred CcccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 35678898 999999999999999999 999999999999999999999964
No 74
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.61 E-value=4.9e-16 Score=125.45 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+||||||||++|||||+.+|+|+||||||++||+++...+.+.+.
T Consensus 1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999988654
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.59 E-value=4.2e-16 Score=102.27 Aligned_cols=55 Identities=4% Similarity=-0.021 Sum_probs=49.3
Q ss_pred HhccCcCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHhhhcC
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKA-----VYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGG 64 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iara-----l~~~p~llllDE--Pt~~lD~~~~~~i~~~~~~~~ 64 (79)
..++++.+|||||+||++||+| ++.+|++++||| ||+++|+.....+.+.+.+.+
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~ 130 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTT
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCC
Confidence 4577888999999999999996 999999999999 999999999999999765433
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.55 E-value=6e-16 Score=99.98 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=36.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG 53 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~ 53 (79)
.....|+||+||++|||+++.+|++++|||||++||+.++
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 3456799999999999999999999999999999999933
No 77
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.53 E-value=1.4e-14 Score=104.85 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
..++..|||||+|+++||++|+ .+|+++|||||+++||+..+..+.+++.
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 381 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR 381 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence 4567789999999999999999 5799999999999999999999999653
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.52 E-value=6.4e-15 Score=106.14 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=46.8
Q ss_pred hccCcC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 11 KKKKKK-KKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 11 ~~~~~~-~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+.++. .|||||+|+++||++|+ .+|+++||||||++||+..+..+++.+.
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~ 318 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAA 318 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHH
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 356777 89999999999999999 8999999999999999999999999754
No 79
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.46 E-value=1.2e-13 Score=98.54 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=44.2
Q ss_pred cCcCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 13 KKKKKKKKKKKNLL------DIFKAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 13 ~~~~~LSgGqrqrl------~iaral~~~-p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.+.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 331 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR 331 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHH
Confidence 56789999999988 567899999 99999999999999999999998754
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.1e-13 Score=102.41 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=41.9
Q ss_pred cCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHhhh
Q psy1505 15 KKKKKKKKKNLLDIFKA--VYKNADI----YLLDD-PLSAVDMHVGKHLFEDCIS 62 (79)
Q Consensus 15 ~~~LSgGqrqrl~iara--l~~~p~l----lllDE-Pt~~lD~~~~~~i~~~~~~ 62 (79)
+.+|||||+|||+|||| |+.+|++ +|||| ||++||+. ...+.+++..
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence 77999999999999999 9999999 99999 99999999 6666665443
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.23 E-value=1.4e-13 Score=92.45 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 21 KKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 21 Gqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
||+|||+|||||+.+|+++||||||++ .+..+.++
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 999999999999999999999999999 56666664
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.21 E-value=4.4e-12 Score=94.03 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=50.8
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMH-----VGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~-----~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
..+.+|.+||+||+|++.+|+++..+|+++|+| ||++||.. .+..+.++ +..+.+.|.+++
T Consensus 346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l------l~~l~~~g~tvi 411 (525)
T 1tf7_A 346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV------TGYAKQEEITGL 411 (525)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH------HHHHHHTTCEEE
T ss_pred EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH------HHHHHhCCCEEE
Confidence 456788999999999999999999999999999 99999999 88888884 444444455544
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.90 E-value=1.7e-09 Score=85.58 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=38.7
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF 57 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~ 57 (79)
+.......++|+||+|++.|+++ +.+|+++|||||++|+|+.....+.
T Consensus 727 d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 727 DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp -------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 34556778999999999999999 7999999999999999999888776
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=3.3e-11 Score=88.29 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 18 KKKK--KKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 18 LSgG--qrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
||+| |+||++||+++.. +|+++++||||+|||+..+..+++.+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 9999 9999999999999 99999999999999999998888753
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.83 E-value=6.5e-09 Score=82.42 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=35.7
Q ss_pred ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHL 56 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i 56 (79)
+.....+|+|+.++..+|+++ +.+|+++|||||++|+|+.....+
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i 762 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL 762 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence 456678999999999999999 999999999999999999988777
No 86
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.72 E-value=1.6e-10 Score=79.95 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=40.9
Q ss_pred hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
..+.+..+.+|||||+||+++|||++. ++++|||+.+||+.....+..
T Consensus 89 ~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~ 136 (270)
T 3sop_A 89 EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH 136 (270)
T ss_dssp HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence 356677889999999999999999876 999999999999998554444
No 87
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.67 E-value=1.9e-08 Score=68.60 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=35.7
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS--AVDMHVG---KHLFE 58 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~--~lD~~~~---~~i~~ 58 (79)
.+.++..||+|+.+++ ++++.+|+++++|||++ ++|+... ..+++
T Consensus 112 ~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~ 161 (279)
T 1nlf_A 112 IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 161 (279)
T ss_dssp TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH
Confidence 4567899999997754 68888999999999999 8887433 55555
No 88
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.63 E-value=1.8e-10 Score=81.31 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=36.1
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD 49 (79)
.+.++.+|||||+||+++|++++.+|+++|+|||+..+|
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 346788999999999999999999999999999999986
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.57 E-value=6e-08 Score=77.47 Aligned_cols=46 Identities=7% Similarity=-0.104 Sum_probs=36.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG-KHLFE 58 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~-~~i~~ 58 (79)
.....++|+++++ +++|++++.+|+++|||||++|+|+... ..+++
T Consensus 846 ~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~ 892 (1022)
T 2o8b_B 846 MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANA 892 (1022)
T ss_dssp ----CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence 3455678888876 9999999999999999999999999875 33455
No 90
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.55 E-value=1.6e-08 Score=65.12 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=43.8
Q ss_pred ccCcCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNL-LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 12 ~~~~~~LSgGqrqr-l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
..++..+|+||+|+ +..+++++.+|.++++||||+++|.....++++.
T Consensus 144 ~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~ 192 (210)
T 1pui_A 144 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQK 192 (210)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHH
T ss_pred EecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHH
Confidence 45677899999999 8999999999999999999999999999999985
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.54 E-value=4.8e-08 Score=76.07 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=45.2
Q ss_pred cCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHhhhcCcchhhhcCC
Q psy1505 13 KKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDP---LSAVDMHVG-KHLFEDCISGGIIPMINSPG 73 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral--~~~p~llllDEP---t~~lD~~~~-~~i~~~~~~~~~~~~l~~~g 73 (79)
.....+|+|+++++.+++++ +.+|+++||||| |+++|+... ..+.+.+.+.+.+..+++|.
T Consensus 631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~ 697 (765)
T 1ewq_A 631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY 697 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34456899999999999999 999999999999 999998875 46777554444444455554
No 92
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.53 E-value=7.3e-09 Score=72.71 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=35.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGK 54 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~ 54 (79)
.++++.+|| +||++|||+++.+|+ +++|| ||+|+|+..+.
T Consensus 198 ~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 198 NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp CHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 345677899 999999999999999 99999 99999998764
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.49 E-value=1.9e-07 Score=63.90 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=31.8
Q ss_pred CcCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHH
Q psy1505 14 KKKKKKKKK-KNLLDIFKAVYKNADIYLLDDPLS---A---VDM-HVGKHLFED 59 (79)
Q Consensus 14 ~~~~LSgGq-rqrl~iaral~~~p~llllDEPt~---~---lD~-~~~~~i~~~ 59 (79)
.+.++|.++ +|++. |+++..+|+++|+||||+ + +|. .....+.+.
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 346789998 66766 999999999999999999 4 344 455566663
No 94
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.49 E-value=4.6e-08 Score=69.24 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505 20 KKKKNLLDIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 20 gGqrqrl~iaral~~~p~llllDEPt~ 46 (79)
|||+||++||+||..+|+++++|||++
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 899999999999999999999999998
No 95
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.46 E-value=2.1e-08 Score=72.23 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=35.6
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKH 55 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~ 55 (79)
++++.+|| +||++|||+++.+|+ +++|| ||+|+|+..+..
T Consensus 256 ~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~ 297 (359)
T 2og2_A 256 YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR 297 (359)
T ss_dssp HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH
T ss_pred hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH
Confidence 45677888 999999999999999 99999 999999987653
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.28 E-value=1.2e-06 Score=56.64 Aligned_cols=43 Identities=5% Similarity=-0.145 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHH
Q psy1505 17 KKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAV--DMHVGKHLFED 59 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~--llllDEPt~~l--D~~~~~~i~~~ 59 (79)
..|.++.+....+.+...+|+ ++++||||+++ |+.....+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~ 149 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY 149 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH
Confidence 448999888888888778999 99999999877 98877777774
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=1.4e-08 Score=70.82 Aligned_cols=42 Identities=2% Similarity=-0.030 Sum_probs=35.4
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA-VDMHVGKHL 56 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~-lD~~~~~~i 56 (79)
.+.++.++|||+|||+.+||+++ ++++||||++ ||+.....+
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l 149 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFM 149 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHH
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHH
Confidence 34888999999999999998885 9999999984 999875333
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.16 E-value=1.9e-09 Score=71.77 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 16 KKKKKKKKNLLDI-----FKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 16 ~~LSgGqrqrl~i-----aral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
.+|||||+||++| +++++.+|++++|||||+++|......+.+.
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~ 169 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKR 169 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 4689999999999 8999999999999999999998766655553
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.13 E-value=1.6e-06 Score=61.60 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy1505 19 KKKKKNLLDIFKAVY-------KNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 19 SgGqrqrl~iaral~-------~~p~llllDEPt~~lD~~ 51 (79)
|.++.|++.++++++ .+|+++|+||||+++|+.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 678999999999998 689999999999999985
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.09 E-value=2.1e-07 Score=61.28 Aligned_cols=53 Identities=4% Similarity=-0.056 Sum_probs=42.0
Q ss_pred hccCcCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHhhhc
Q psy1505 11 KKKKKKKKKKKKKNLL-DIFK---AVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISG 63 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl-~iar---al~~~p~llllDE--Pt~~lD~~~~~~i~~~~~~~ 63 (79)
...+...+|+||++++ ++++ |+..+|+++|+|| |+..+|+...+.+.+++...
T Consensus 77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 3455667999999888 4444 5789999999999 89999999888888876533
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.05 E-value=2e-08 Score=71.03 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=33.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+.+|||||||| |||++.+|++|| |++||+.....+..
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~ 234 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY 234 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH
Confidence 67999999999 999999999999 99999998877754
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.04 E-value=6e-06 Score=53.23 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=30.5
Q ss_pred CcCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHH
Q psy1505 14 KKKKKKKKK--KNLLDIFKAVYKN-ADIYLLDDPLSAVDMH 51 (79)
Q Consensus 14 ~~~~LSgGq--rqrl~iaral~~~-p~llllDEPt~~lD~~ 51 (79)
.+.++|+++ +++++.+++++.+ |+++++|||++.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 445566664 5688888999886 9999999999999873
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.04 E-value=3.9e-06 Score=65.66 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=29.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHL 56 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i 56 (79)
...++|+++++...+ ...+.+|+++|||||++|+|+.....+
T Consensus 666 ~~stf~~e~~~~~~i-l~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 666 GRSTFMVEMTETANI-LHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ----CHHHHHHHHHH-HHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred hhhhhhHHHHHHHHH-HHhccCCCEEEEECCCCCCChhHHHHH
Confidence 345677777654444 445799999999999999998766654
No 104
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.95 E-value=1e-05 Score=55.41 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+++|+++|..+|+++++|||+ |+.....+++.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~ 119 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA 119 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH
Confidence 899999999999999999999 98887666553
No 105
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.94 E-value=3e-06 Score=55.59 Aligned_cols=40 Identities=13% Similarity=-0.115 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHH
Q psy1505 20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVD-----MHVGKHLFED 59 (79)
Q Consensus 20 gGqrqrl~iaral~~~p~llllDEPt~~lD-----~~~~~~i~~~ 59 (79)
.++.........-..+|+++++||||+++| +..+..+.++
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l 164 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKL 164 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHH
Confidence 344443344444458999999999999997 5666667774
No 106
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.93 E-value=1.6e-07 Score=61.48 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=26.1
Q ss_pred HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHh
Q psy1505 31 AVYKNADIYLLDDPLSAV----DMHVGKHLFEDC 60 (79)
Q Consensus 31 al~~~p~llllDEPt~~l----D~~~~~~i~~~~ 60 (79)
+|+.+|++++|||||+++ |+..+..+.+.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l 170 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTAR 170 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 889999999999999998 777888887753
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.83 E-value=3.6e-06 Score=62.27 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCCC-----CCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 25 LLDIFKAVY-KNADIYLLDDPLSA-----VDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 25 rl~iaral~-~~p~llllDEPt~~-----lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.-.+...|. .+|+++++||||+. +|+..+..++++ +..+++.|.|+++
T Consensus 127 ~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~l------l~~l~~~g~tvl~ 180 (525)
T 1tf7_A 127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRL------VARLKQIGATTVM 180 (525)
T ss_dssp HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHH------HHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHH------HHHHHHCCCEEEE
Confidence 344455553 57999999999984 588999999994 4444445555543
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.82 E-value=1.2e-07 Score=63.37 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=36.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAV-YKNADIYLLD----DPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral-~~~p~llllD----EPt~~lD~~~~~~i~~~~ 60 (79)
..++++.+||| |+ +++ +.+|+++++| |||+++|+.....+.+.+
T Consensus 145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL 193 (246)
T ss_dssp HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence 45778889999 55 677 8999999999 999999998777776643
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.77 E-value=2.6e-07 Score=64.41 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=32.8
Q ss_pred ccCcCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHH
Q psy1505 12 KKKKKKKKKKKKNLLDIF--KAVYKNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~ia--ral~~~p~llllDEPt~~lD~~ 51 (79)
..+..++||||.||+.+| +++ +|+|+|+|||++++|+.
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 345678999999999987 555 89999999999999974
No 110
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=2.4e-05 Score=50.61 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=24.9
Q ss_pred CCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHH
Q psy1505 18 KKKKKK-NLLDIFKAVYK-------NADIYLLDDPLSAVDMH 51 (79)
Q Consensus 18 LSgGqr-qrl~iaral~~-------~p~llllDEPt~~lD~~ 51 (79)
.+++++ +.+..+..++. +|+++++|||++++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 444443 34666666655 89999999999999883
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.59 E-value=7.6e-09 Score=67.35 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=41.9
Q ss_pred HhccCcCCCCHHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q psy1505 10 KKKKKKKKKKKKKK----NLLDIFKAVYKNADIYLLDDPLSA-------VDMHVGKHLFED 59 (79)
Q Consensus 10 ~~~~~~~~LSgGqr----qrl~iaral~~~p~llllDEPt~~-------lD~~~~~~i~~~ 59 (79)
..+.++.++|+|++ |+++++++++.+|.++++||||++ ||+.....+.+.
T Consensus 82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 34567889999964 688999999999999999999999 898777766664
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.51 E-value=0.00013 Score=52.10 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+|++||..+|+++++|||+ |++....+.+.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence 9999999999999999999 77766655553
No 113
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.51 E-value=2.3e-06 Score=57.33 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=34.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~ 51 (79)
.+.++.+||+||+||+++ ++++.+|+++|+|||....+..
T Consensus 110 ~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 110 KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred CCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 456788999999999988 5888899999999999888765
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.51 E-value=0.00019 Score=45.38 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHh
Q psy1505 33 YKNADIYLLDDPLS-AVDMHVGKHLFEDC 60 (79)
Q Consensus 33 ~~~p~llllDEPt~-~lD~~~~~~i~~~~ 60 (79)
+.+|+++++|||++ ++|+..+..+++++
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 46899999999985 89999998888853
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.13 E-value=2.9e-05 Score=56.76 Aligned_cols=41 Identities=5% Similarity=-0.096 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHH
Q psy1505 17 KKKKKKKNLLDIFKAVYKNAD---IYLLDDPL-SAVDMHVGKHLF 57 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~---llllDEPt-~~lD~~~~~~i~ 57 (79)
.++.+++|+++|||+++.+|+ ++++|||| .++|+.....+.
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk 162 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK 162 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHH
Confidence 356677889999999999999 99999999 699998754433
No 116
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.09 E-value=0.00019 Score=51.11 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=33.5
Q ss_pred cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
..+..||+|| |++++| +.+|++ |+|+|+.....+.+++
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ll 204 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLL 204 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHH
Confidence 5688999999 899999 578877 9999999999999964
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.08 E-value=2.2e-05 Score=55.42 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=33.3
Q ss_pred CcCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHh
Q psy1505 14 KKKKKKKKKKNLLDIFKAVY-KNADIYLLDD---PL------SAVDMHVGKHLFEDC 60 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~-~~p~llllDE---Pt------~~lD~~~~~~i~~~~ 60 (79)
.+..+|+|++++..+++++. .+|++++||| |+ .++|+..+..+.+.+
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 34456778888888888774 6999999999 65 588998888888853
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00041 Score=43.54 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=21.7
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 31 AVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 31 al~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+++.+|+++++|||+. ++...+..++++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~l 106 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSI 106 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHH
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHH
Confidence 3467899999999998 555557777775
No 119
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.02 E-value=0.00011 Score=53.63 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=33.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG 53 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~ 53 (79)
+.++.+||+|++|+++++++|...|.++++ +.+|....
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 456678999999999999999999999999 88887654
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.75 E-value=0.00027 Score=49.81 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy1505 17 KKKKKKKNLLDIFKAV---YK--NADIYLLDDPL 45 (79)
Q Consensus 17 ~LSgGqrqrl~iaral---~~--~p~llllDEPt 45 (79)
.+|+|++||.+|+++| .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999997
No 121
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0015 Score=44.89 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=23.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 32 VYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 32 l~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..+|+++|+|||++ ||+.....+++.+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 456899999999999 99999998888654
No 122
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.67 E-value=8.4e-06 Score=52.91 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCE
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADI 38 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~l 38 (79)
.|||||+||++||||++.+|++
T Consensus 103 glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGG
T ss_pred CcCCCCCcEEEEEecccCCCcc
Confidence 4999999999999999999976
No 123
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.62 E-value=0.0026 Score=47.38 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=41.6
Q ss_pred HhccCcCCCCHHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcc
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAV--YK---------------NADIYLLDDPLSAVDMHVGKHLFEDCISGGII 66 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral--~~---------------~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~ 66 (79)
+.++..+.+||||.|-..+|.+. +. .-.++++||. +-+|.......+++|.+-|+-
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQ 444 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQ 444 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCE
Confidence 44556889999999965444432 22 2368999999 999999999999987655543
No 124
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.60 E-value=0.00098 Score=48.81 Aligned_cols=36 Identities=6% Similarity=-0.129 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+..||+|| ||++|| +.+|++ |+|+|+.....+.+++
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll 291 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV 291 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH
Confidence 56799999 999999 788888 9999999999999964
No 125
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.55 E-value=0.0073 Score=41.73 Aligned_cols=41 Identities=17% Similarity=0.023 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHH
Q psy1505 19 KKKKKNLLDIFKAVYKNADIYLLDDP-LSAVDMHVGKHLFED 59 (79)
Q Consensus 19 SgGqrqrl~iaral~~~p~llllDEP-t~~lD~~~~~~i~~~ 59 (79)
+..+-++.+++.+...+++++|+||| +.++|......+...
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence 34455788899988899999999999 999999888777653
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.31 E-value=0.0053 Score=43.76 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+.+|+++|..+|+++++|||+ |+.....+++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~ 229 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALR 229 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHH
Confidence 468999999999999999999 7776555444
No 127
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.30 E-value=0.00055 Score=47.85 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHH
Q psy1505 18 KKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHV 52 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~ 52 (79)
++..++||++|||+++.+|+ ++.|| |+++.+...
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~ 238 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE 238 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH
Confidence 34556899999999999999 66688 677765443
No 128
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.29 E-value=0.0022 Score=48.50 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.6
Q ss_pred hcCCCEEEEeCC------CCCCCHHHHHHHHHHh
Q psy1505 33 YKNADIYLLDDP------LSAVDMHVGKHLFEDC 60 (79)
Q Consensus 33 ~~~p~llllDEP------t~~lD~~~~~~i~~~~ 60 (79)
...|+++++||| |+|+|+..+..+.+++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 356999999999 9999999998888864
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.25 E-value=0.0074 Score=39.01 Aligned_cols=18 Identities=6% Similarity=0.146 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCCCCCHH
Q psy1505 34 KNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 34 ~~p~llllDEPt~~lD~~ 51 (79)
.+|+++++|||++.+|+.
T Consensus 118 ~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTD 135 (243)
T ss_dssp SCEEEEEEETSSGGGC--
T ss_pred CCceEEEEeCchHHHHHH
Confidence 589999999999999875
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.12 E-value=0.001 Score=41.93 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=34.4
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+.++..+|+|++|++.++|++..+|+++ +|+.....+++.+
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 4567789999999999999999999876 5888887777754
No 131
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.10 E-value=0.00046 Score=48.07 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDP 44 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEP 44 (79)
+||+||+||+..+++++++|+++ |||
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~ 166 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA 166 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH
Confidence 79999999998888888999987 888
No 132
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.79 E-value=0.0047 Score=43.21 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy1505 16 KKKKKKKKNLL---DIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 16 ~~LSgGqrqrl---~iaral~~~p~llllDEPt~ 46 (79)
.++|+|+.+++ ++++++..+|+++|+|||..
T Consensus 164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 46789999999 89999999999999999975
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.48 E-value=0.01 Score=43.57 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchh-hhcCCceee
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPM-INSPGIGLI 77 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~-l~~~g~~~~ 77 (79)
.|+..+ ++|+++|..++.+|++|+|+..|.+.....+++. +.. +..+|++++
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~------I~~~L~~~gi~I~ 213 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK------ITSELVSNGVQIY 213 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH------HHHHHBTTBCCCC
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH------HHHHHHHcCCcEE
Confidence 455555 8999999999999999999999999998888884 333 555666654
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.32 E-value=0.0049 Score=47.84 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=39.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHH
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS-AVDMHVGKHLFE 58 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~-~lD~~~~~~i~~ 58 (79)
+..+.-+|+|+.++..++..++.+++++|+|||.. ++|......++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~ 232 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLK 232 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHH
Confidence 45566789999999999999999999999999996 898776555544
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.25 E-value=0.027 Score=39.91 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcC--CCEEEEeCCCCCC
Q psy1505 23 KNLLDIFKAVYKN--ADIYLLDDPLSAV 48 (79)
Q Consensus 23 rqrl~iaral~~~--p~llllDEPt~~l 48 (79)
.+.+.++++++.+ |+++++|||++.+
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 3456788888654 9999999999988
No 136
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.97 E-value=0.012 Score=37.18 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+.+|++++.+|.+.++| |+++|.....++++.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI 186 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence 367899999999999999 9999999999999853
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.048 Score=38.15 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.5
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLD-DPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllD-EPt~~lD~~~~~~i~~~~ 60 (79)
..+.++.++|+|++|.+. +.+...++-++++| +|..++|......+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i 274 (357)
T 2e87_A 224 LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274 (357)
T ss_dssp TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence 345567789999988776 44444666778899 999999998887777643
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.54 E-value=0.034 Score=39.51 Aligned_cols=34 Identities=6% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD 49 (79)
+.||.++.+++..|...+.+++++|.|+|...++
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 5799999999999999999999999999976543
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.16 E-value=0.046 Score=39.57 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=14.8
Q ss_pred cCCCEEEEeCCCCCCCHH
Q psy1505 34 KNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 34 ~~p~llllDEPt~~lD~~ 51 (79)
.+|+++++|||++.+++.
T Consensus 272 ~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp SCEEEEEEETGGGGCC--
T ss_pred cCCceEEecchhhhCchh
Confidence 579999999999999864
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.90 E-value=0.076 Score=34.13 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.1
Q ss_pred cCCCEEEEeCCCCCC--CHH
Q psy1505 34 KNADIYLLDDPLSAV--DMH 51 (79)
Q Consensus 34 ~~p~llllDEPt~~l--D~~ 51 (79)
.+|+++++|+|+..+ |+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~ 146 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPA 146 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGG
T ss_pred hCCCEEEECCchHhhcCCHH
Confidence 579999999999887 553
No 141
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.70 E-value=0.11 Score=38.47 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy1505 20 KKKKNLLDIFKAVYKNADIYLLDDPL 45 (79)
Q Consensus 20 gGqrqrl~iaral~~~p~llllDEPt 45 (79)
++++.|-.+++|....|.+|++||+-
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechh
Confidence 67888889999999999999999993
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.74 E-value=0.25 Score=35.64 Aligned_cols=33 Identities=3% Similarity=-0.044 Sum_probs=26.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVY--KNADIYLLDDPLSAVD 49 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~--~~p~llllDEPt~~lD 49 (79)
...+|.++.+ +.++.+. .+|+++++|+++...+
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 4578998876 5666665 6899999999998774
No 143
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.65 E-value=0.061 Score=33.86 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 26 l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
...|++++.+|.+.++| |+++|.....++++.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNI 162 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHH
Confidence 35688999999999999 9999999999988864
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.44 E-value=0.00026 Score=48.47 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=41.0
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHhh
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS------------AVDMHVGKHLFEDCI 61 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~------------~lD~~~~~~i~~~~~ 61 (79)
..++.+.+|||||+|++.|++|+.++|+++ ||++. --|...+..+++.+.
T Consensus 130 ~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 130 VVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 456677889999999999999999999975 99864 337888888888654
No 145
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.84 E-value=0.031 Score=39.23 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 16 KKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.++|+|++|++..+++++. +|+++. ++++|......+++.+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 5689999999999999887 688876 9999999988888854
No 146
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.24 E-value=0.057 Score=38.70 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=20.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAV 32 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral 32 (79)
++.++++.+|| ||+||++||+++
T Consensus 306 ~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 306 KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hhcCCCcccCC-HHHHHHHHHhcC
Confidence 46788999999 999999999875
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.31 E-value=0.00054 Score=44.47 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCC
Q psy1505 16 KKKKKKKKNLLDIF-KAVYKNADIYLLDDPLS 46 (79)
Q Consensus 16 ~~LSgGqrqrl~ia-ral~~~p~llllDEPt~ 46 (79)
..+|+||+|+++++ ++++.++.++++|||.+
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~ 141 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCchh
Confidence 35799999999998 88888888888999853
No 148
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.28 E-value=0.3 Score=33.64 Aligned_cols=31 Identities=10% Similarity=-0.014 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 24 NLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 24 qrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
-+.++++ +.+|+++|+| |+|+|+.....+.+
T Consensus 173 l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 173 FQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp HHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred HHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHH
Confidence 3455554 4899999999 88998765544443
No 149
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.89 E-value=0.069 Score=40.01 Aligned_cols=45 Identities=4% Similarity=0.059 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+.+|+|++|++..++....++.++++||.-. |++..+..+++.+.
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 6789999999999999999999999999887 79999999888765
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.61 E-value=1.1 Score=32.32 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=19.6
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHH
Q psy1505 34 KNADIYLLDDPLSAVDM-HVGKHLFED 59 (79)
Q Consensus 34 ~~p~llllDEPt~~lD~-~~~~~i~~~ 59 (79)
.+|++|++||+....+. ..+..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~ 219 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHT 219 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHH
Confidence 38999999999876653 566667664
No 151
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.34 E-value=1.4 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAV 48 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~~l 48 (79)
||.++.+++..|...+.++.+++.|+|...+
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 8999999999999999999999999997543
No 152
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.34 E-value=0.0051 Score=44.84 Aligned_cols=25 Identities=0% Similarity=-0.110 Sum_probs=22.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYL 40 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~lll 40 (79)
.+.+|||||+|| |||+++.+|++..
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 567899999999 9999999999876
No 153
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.47 E-value=0.0012 Score=47.20 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Q psy1505 18 KKKKKKNLLDIFKAVYKNADI--YLLDDPLSAVDMH 51 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~l--lllDEPt~~lD~~ 51 (79)
+|+| ||+++++++..+|.+ +|+||.|+.+|..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 4788 889999999999999 9999999988854
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.25 E-value=0.018 Score=43.24 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=22.5
Q ss_pred CCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCH
Q psy1505 17 KKKKKKKNLL----------DIFKAVYKNAD-IYLLDDPLSAVDM 50 (79)
Q Consensus 17 ~LSgGqrqrl----------~iaral~~~p~-llllDEPt~~lD~ 50 (79)
.+|+||+|+. ++++++...|. ++++||++..++.
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 4566665542 24555667787 7889999988873
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.27 E-value=1.3 Score=29.37 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505 19 KKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49 (79)
Q Consensus 19 SgGqrqrl~iaral~~~p~llllDEPt~~lD 49 (79)
++++..+..+..+...+|.+|++||+....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 4677788888888888999999999977654
No 156
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.08 E-value=2.7 Score=27.49 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.9
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 29 FKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 29 aral~~~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
+..++..++++||| ||+.....+.+.+.
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 34455678999999 99999999999643
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.84 E-value=0.0059 Score=38.53 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 19 KKKKKNLLDIFK------AVYKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 19 SgGqrqrl~iar------al~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
|+|++|++.++. +++.+|....+|+ ++|+..... ++.
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~ 138 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEE 138 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHH
Confidence 777777777777 7888888777773 788876666 554
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.32 E-value=2.1 Score=29.00 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 34 KNADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 34 ~~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
.+|.++++||+... |+.....+..++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~ 149 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLG 149 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHT
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHH
Confidence 45889999999876 888888887754
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.46 E-value=0.0058 Score=41.08 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS------------AVDMHVGKHLFED 59 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~------------~lD~~~~~~i~~~ 59 (79)
...+....+||||++|++.+++|+.++|++ +|++.. --|...+..++..
T Consensus 161 ~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 221 (278)
T 1iy2_A 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRI 221 (278)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 445666778999999999999999999976 565432 2356666666664
No 160
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.42 E-value=0.15 Score=35.25 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=14.9
Q ss_pred hccCcCCCCHHHHHHHHHH
Q psy1505 11 KKKKKKKKKKKKKNLLDIF 29 (79)
Q Consensus 11 ~~~~~~~LSgGqrqrl~ia 29 (79)
+..++..||+|++||+.++
T Consensus 156 at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp EESCGGGSCHHHHTTCSEE
T ss_pred ecCCcccCCHHHHHhcCce
Confidence 3566789999999998544
No 161
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=71.98 E-value=7.6 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=20.2
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCC
Q psy1505 23 KNLLDIFKAVY--KNADIYLLDDPLSAVD 49 (79)
Q Consensus 23 rqrl~iaral~--~~p~llllDEPt~~lD 49 (79)
.+.+.+++.++ .+++++++|+++.-..
T Consensus 127 e~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 127 EQALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 34566666664 6799999999998764
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=70.86 E-value=0.85 Score=32.26 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=31.5
Q ss_pred CcCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 14 KKKKKKKKKKNLLDIF----KAV-YKNADIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 14 ~~~~LSgGqrqrl~ia----ral-~~~p~llllDEPt~~lD~~~~~~i~~~ 59 (79)
++..+|+++.++++++ +.+ ..+|++ +|+|++|......+++.
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~ 347 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDK 347 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHH
Confidence 3556788888888877 555 334444 79999999999988885
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=68.79 E-value=0.028 Score=36.18 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505 31 AVYKNADIYLLDDPLSAVDMHVGKHLFE 58 (79)
Q Consensus 31 al~~~p~llllDEPt~~lD~~~~~~i~~ 58 (79)
+++.+|.+.+|||||+++|......+.+
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~ 147 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAK 147 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHH
Confidence 5666667777777788887665555544
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=67.53 E-value=5.3 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHH
Q psy1505 27 DIFKAVYKNADIYLLDDPL-SA--VDMHVGKHLFED 59 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt-~~--lD~~~~~~i~~~ 59 (79)
+++.+...+++++|+|+|- .+ .|+....++..+
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 4555556789999999997 34 788777777663
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=66.49 E-value=0.0065 Score=40.10 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHh
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS------------AVDMHVGKHLFEDC 60 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~------------~lD~~~~~~i~~~~ 60 (79)
...+....+||||++|++.+++|+.++|++ +|++.. --|...+..+++.+
T Consensus 137 ~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 137 QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 345566778999999999999999999987 676653 23566677776643
No 166
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.41 E-value=3.9 Score=28.64 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505 19 KKKKKNLLDIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 19 SgGqrqrl~iaral~~~p~llllDEPt~ 46 (79)
+++...+-.|+.++..+|+.+++|||..
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 4666788999999999999999999986
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.51 E-value=8.2 Score=25.86 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=18.6
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHH
Q psy1505 33 YKNADIYLLDDPLSA-VDMHVGKHLFED 59 (79)
Q Consensus 33 ~~~p~llllDEPt~~-lD~~~~~~i~~~ 59 (79)
..++++|++||+-.- .+...+..++..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~ 123 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHI 123 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHH
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHH
Confidence 357999999998653 344566666664
No 168
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=63.54 E-value=0.11 Score=37.65 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.2
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHH
Q psy1505 35 NA--DIYLLDDPLSAVDMHVGKHLFED 59 (79)
Q Consensus 35 ~p--~llllDEPt~~lD~~~~~~i~~~ 59 (79)
+| ++.++|||+.+.|+......++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~ 165 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEG 165 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHH
Confidence 78 88899999999999988777764
No 169
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=62.76 E-value=4.1 Score=28.12 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505 17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49 (79)
Q Consensus 17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD 49 (79)
+.++.++++..+++..+.+|+++|+.-..+..|
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~ 186 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQD 186 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence 356788899999999999999888774333344
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.40 E-value=6.7 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=23.2
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHh
Q psy1505 23 KNLLDIFKAVY--KNADIYLLDDPLSA--VDMHVGKHLFEDC 60 (79)
Q Consensus 23 rqrl~iaral~--~~p~llllDEPt~~--lD~~~~~~i~~~~ 60 (79)
+..+..++..+ .+.+++||||.+.+ ++......+++++
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l 147 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISAL 147 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHH
Confidence 45566666666 55799999999763 2222333455543
No 171
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=60.69 E-value=5.2 Score=27.33 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCC
Q psy1505 24 NLLDIFKAVY---KNADIYLLDDPLSAVD 49 (79)
Q Consensus 24 qrl~iaral~---~~p~llllDEPt~~lD 49 (79)
+.+..++.++ .+|+++++|+.++-..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 5667777776 6799999999987653
No 172
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=59.40 E-value=12 Score=26.03 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy1505 22 KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG 53 (79)
Q Consensus 22 qrqrl~iaral~~~p~llllDEPt~~lD~~~~ 53 (79)
+.+.-.+++++..++.++++|.++ +.|....
T Consensus 230 ~~eL~~i~ral~~de~llvLDa~t-~~~~~~~ 260 (328)
T 3e70_C 230 MDEMKKIARVTKPNLVIFVGDALA-GNAIVEQ 260 (328)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecHH-HHHHHHH
Confidence 344455889999888899999555 4444443
No 173
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=58.19 E-value=2.4 Score=29.51 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=20.9
Q ss_pred EeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505 41 LDDPLSAVDMHVGKHLFEDCISGG 64 (79)
Q Consensus 41 lDEPt~~lD~~~~~~i~~~~~~~~ 64 (79)
.=|||.|+|.++...+.+.|.+.|
T Consensus 212 ~lEPTGGIdl~Nf~~I~~i~l~aG 235 (275)
T 3m6y_A 212 ALEPTGGIDKENFETIVRIALEAN 235 (275)
T ss_dssp EEEEBSSCCTTTHHHHHHHHHHTT
T ss_pred eECCCCCccHhHHHHHHHHHHHcC
Confidence 559999999999999999887554
No 174
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.09 E-value=6.7 Score=26.37 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=14.1
Q ss_pred HHHHHhcCCCEEEEeCCCC
Q psy1505 28 IFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 28 iaral~~~p~llllDEPt~ 46 (79)
+..++..+|+++|+||+-.
T Consensus 77 l~~~L~~~pdlvIVDElG~ 95 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAH 95 (228)
T ss_dssp HHHHHHHCCSEEEESCTTC
T ss_pred HHHHHhcCCCEEEEeCCCC
Confidence 3344557899999999764
No 175
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=56.10 E-value=2.3 Score=29.25 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505 27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGG 64 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~ 64 (79)
++|.|-+. -.+ .=|||.|+|.++...+.+.|.+.|
T Consensus 178 avAka~a~-~g~--~lEPTGGIdl~N~~~I~~i~l~aG 212 (249)
T 3m0z_A 178 AVAKACAA-HDF--WLEPTGGIDLENYSEILKIALDAG 212 (249)
T ss_dssp HHHHHHHH-TTC--EEEEBSSCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCc--eECCCCCccHhhHHHHHHHHHHcC
Confidence 34444433 344 559999999999999999887544
No 176
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=54.76 E-value=0.42 Score=32.78 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHhccCcCCCCHHHHHHHHHHH
Q psy1505 9 KKKKKKKKKKKKKKKNLLDIFK 30 (79)
Q Consensus 9 ~~~~~~~~~LSgGqrqrl~iar 30 (79)
...++++..|||.++|+++|||
T Consensus 279 ~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 279 ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3678899999999999999986
No 177
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=53.53 E-value=11 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCH
Q psy1505 24 NLLDIFKAVY----KNADIYLLDDPLSAVDM 50 (79)
Q Consensus 24 qrl~iaral~----~~p~llllDEPt~~lD~ 50 (79)
+.+..++.++ .+++++++|+.++-...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 4455555555 57999999999986643
No 178
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.37 E-value=45 Score=23.62 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy1505 16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAV 48 (79)
Q Consensus 16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~l 48 (79)
+.||..+.+++.-|...+.+.++++.|+|...+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 458889999988888777788888888875443
No 179
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=51.85 E-value=0.75 Score=30.40 Aligned_cols=29 Identities=10% Similarity=-0.042 Sum_probs=20.4
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCE
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADI 38 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~l 38 (79)
..++.++.||||..|+.+.+++|+..|+-
T Consensus 66 L~~R~~~~lsg~~~~lt~~g~~l~~~~~~ 94 (265)
T 1b9m_A 66 LVERATGGKGGGGAVLTRYGQRLIQLYDL 94 (265)
T ss_dssp CEEECCCC-----EEECHHHHHHHHHHHH
T ss_pred eEEecCCCCCCCceEECHHHHHHHHHHHH
Confidence 46778899999999999999999988763
No 180
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.94 E-value=57 Score=22.89 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCC
Q psy1505 23 KNLLDIFKAVY--KNADIYLLDDPLSAV 48 (79)
Q Consensus 23 rqrl~iaral~--~~p~llllDEPt~~l 48 (79)
.+.+.+++.++ .+++++++|..++-.
T Consensus 138 e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 138 EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 34566677665 568999999988754
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=43.76 E-value=0.17 Score=36.29 Aligned_cols=37 Identities=5% Similarity=-0.175 Sum_probs=30.2
Q ss_pred HhccCcCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCCC
Q psy1505 10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYL-LDDPLS 46 (79)
Q Consensus 10 ~~~~~~~~LSgGqrqrl~iaral~~~p~lll-lDEPt~ 46 (79)
..+.....+++|+.+++..+.+++..|++++ ||+|+.
T Consensus 275 ~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 275 IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred ccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 3455677899999999998877888888888 888876
No 182
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=42.88 E-value=4.3 Score=29.71 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHH
Q psy1505 30 KAVYKNADIYLLDDPLSAVDMH 51 (79)
Q Consensus 30 ral~~~p~llllDEPt~~lD~~ 51 (79)
|||..+ +++|+ ||++.+||.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~ 47 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD 47 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG
T ss_pred cccccC-cEEec-cCccCCCcc
Confidence 788888 99999 999999994
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=42.49 E-value=86 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC
Q psy1505 24 NLLDIFKAVY--KNADIYLLDDPLSAVD 49 (79)
Q Consensus 24 qrl~iaral~--~~p~llllDEPt~~lD 49 (79)
+.+.+++.++ ..|+++++|+-++-..
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 4556666665 4699999998766554
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=41.76 E-value=11 Score=23.38 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=16.2
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHH
Q psy1505 34 KNADIYLLDDPLSAV-DMHVGKHLFED 59 (79)
Q Consensus 34 ~~p~llllDEPt~~l-D~~~~~~i~~~ 59 (79)
.+|.++++||.-.-- +......+++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~ 129 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDL 129 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHH
Confidence 568999999965432 22235555553
No 185
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=41.76 E-value=9.4 Score=28.66 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=30.2
Q ss_pred cCCCCHH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy1505 15 KKKKKKK-KKNLLDIFKAVYKNADIYLLDDPLSAVDMHV 52 (79)
Q Consensus 15 ~~~LSgG-qrqrl~iaral~~~p~llllDEPt~~lD~~~ 52 (79)
.+.|+.+ +++...+++.++.+|..++++.++..+|...
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 5556544 4588899999999999999999999999763
No 186
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=39.28 E-value=44 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505 18 KKKKKKNLLDIFKAVYKNADIYLLDDPLS 46 (79)
Q Consensus 18 LSgGqrqrl~iaral~~~p~llllDEPt~ 46 (79)
|+..+.+++.-|...+.+.++++.|+|..
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~~ 291 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAGQ 291 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSSC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 77788888888887777888999998853
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.75 E-value=18 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=15.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHH
Q psy1505 35 NADIYLLDDPLSAVD---MHVGKHLFE 58 (79)
Q Consensus 35 ~p~llllDEPt~~lD---~~~~~~i~~ 58 (79)
.|.++++||+....+ ......+.+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~ 154 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSR 154 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhh
Confidence 388999999987652 334444444
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=35.43 E-value=9 Score=23.64 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=9.7
Q ss_pred cCCCEEEEeCC
Q psy1505 34 KNADIYLLDDP 44 (79)
Q Consensus 34 ~~p~llllDEP 44 (79)
.++++|++||+
T Consensus 114 ~~~~~lilDei 124 (202)
T 2w58_A 114 KKVPVLMLDDL 124 (202)
T ss_dssp HHSSEEEEEEE
T ss_pred cCCCEEEEcCC
Confidence 56789999999
No 189
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=34.93 E-value=68 Score=18.65 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=27.6
Q ss_pred cCCCEEEEeC-CCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 34 KNADIYLLDD-PLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 34 ~~p~llllDE-Pt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+++.+++|= ..+.+|......+.+ ....+...|..+++
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~------~~~~~~~~g~~l~l 89 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWE------FQESCEKRGTILLL 89 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHH------HHHHHHHHTCEEEE
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHH------HHHHHHHCCCEEEE
Confidence 5688889884 577889998888888 34555555555543
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.14 E-value=54 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 27 DIFKAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 27 ~iaral~~~p-~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
.+..++...| .++++||. ..+++..+..++..+.
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLD 144 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHh
Confidence 3555665555 79999997 5678888888888654
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.88 E-value=32 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=20.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505 35 NADIYLLDDPLSAVDMHVGKHLFEDCI 61 (79)
Q Consensus 35 ~p~llllDEPt~~lD~~~~~~i~~~~~ 61 (79)
++.++++|| ...+++..+..+++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le 158 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTME 158 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHH
Confidence 456999999 77888888887877543
No 192
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=32.29 E-value=14 Score=25.45 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=26.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
|...|..||+.+.-|.-.+.=+.+.+++||+++
T Consensus 166 Pa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AA 198 (404)
T 3i33_A 166 PAYFNDSQRQATKDAGTITGLNVLRIINEPTAA 198 (404)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHH
Confidence 567888888888777666666778899999864
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=32.27 E-value=50 Score=21.24 Aligned_cols=19 Identities=21% Similarity=0.045 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCEEEEeCCC
Q psy1505 27 DIFKAVYKNADIYLLDDPL 45 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt 45 (79)
.+..+....|.++++||--
T Consensus 102 ~~~~~~~~~~~vl~iDEid 120 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEID 120 (285)
T ss_dssp HHHHHHHTCSEEEEEETTH
T ss_pred HHHHHHHcCCeEEEEECHH
Confidence 3445556688999999974
No 194
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=32.10 E-value=26 Score=20.36 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 35 NADIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 35 ~p~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+++.+++| .-.+.+|......+.+ ....+.+.|..++
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~------~~~~~~~~g~~l~ 84 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQ------LRTELLRRGIVFA 84 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHH------HHHHHHTTTEEEE
T ss_pred CceEEEEECCCCChhhHHHHHHHHH------HHHHHHHCCCEEE
Confidence 46788888 5577788887777777 3444455555444
No 195
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=31.68 E-value=70 Score=18.24 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=28.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 34 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 34 ~~p~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+|+.+++| ...+.+|......+.+ ....+.+ |..+++
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~------~~~~~~~-g~~l~l 82 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQR------FVKRLPE-GCELRV 82 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHH------HHHHCCT-TCEEEE
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHH------HHHHHHC-CCEEEE
Confidence 578888888 5778889999988888 4555666 666543
No 196
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=30.07 E-value=56 Score=20.55 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.0
Q ss_pred hcCCCEEEEeCCCCCC
Q psy1505 33 YKNADIYLLDDPLSAV 48 (79)
Q Consensus 33 ~~~p~llllDEPt~~l 48 (79)
+.+|+|+++|=|...-
T Consensus 25 i~nakI~ll~~~Le~~ 40 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYK 40 (178)
T ss_dssp EESCCEEEESSCBSCC
T ss_pred cccceEEEEecccCCc
Confidence 3789999999887753
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=29.99 E-value=43 Score=20.13 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505 35 NADIYLLDDPLSAVDMHVGKHLFEDC 60 (79)
Q Consensus 35 ~p~llllDEPt~~lD~~~~~~i~~~~ 60 (79)
+|.++++||.-. +++.....+...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l 150 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTL 150 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHH
T ss_pred CceEEEEECccc-ccHHHHHHHHHHH
Confidence 468999999765 6777777777754
No 198
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=29.76 E-value=86 Score=18.21 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=27.4
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 35 NADIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 35 ~p~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
+++.+++| ...+.+|......+.+ +...+...|..+.+
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~------~~~~~~~~g~~l~l 101 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAG------IVKEYGDVGIYVYL 101 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHH------HHHHHHTTTCEEEE
T ss_pred CceEEEEECCCCccccHHHHHHHHH------HHHHHHHCCCEEEE
Confidence 67888888 4677889999988888 45555555655543
No 199
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=29.08 E-value=34 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCEEEEeCCC
Q psy1505 27 DIFKAVYKNADIYLLDDPL 45 (79)
Q Consensus 27 ~iaral~~~p~llllDEPt 45 (79)
.+..+....|.++++||.-
T Consensus 95 ~~~~a~~~~~~vl~iDEid 113 (268)
T 2r62_A 95 LFETAKKQAPSIIFIDEID 113 (268)
T ss_dssp THHHHHHSCSCEEEESCGG
T ss_pred HHHHHHhcCCeEEEEeChh
Confidence 3445555689999999983
No 200
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=28.89 E-value=18 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=26.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
-|...+..||+.+.=|.-.+.=..+-+++||+++
T Consensus 157 vPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AA 190 (409)
T 4gni_A 157 IPTNFTEKQKAALIAAAAAADLEVLQLISEPAAA 190 (409)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHH
Confidence 4677888898887777777666778889999875
No 201
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=27.52 E-value=33 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.8
Q ss_pred cCCCCHHHH-HHHHHHHHHhcCC-------CEEEEeCCCCCCC
Q psy1505 15 KKKKKKKKK-NLLDIFKAVYKNA-------DIYLLDDPLSAVD 49 (79)
Q Consensus 15 ~~~LSgGqr-qrl~iaral~~~p-------~llllDEPt~~lD 49 (79)
|.+||.-++ +|+.++..++... .|+.-||..-..|
T Consensus 3 p~~Lt~~~k~~R~~~~~~ll~~~~~~~f~~~iv~~DE~~~~~~ 45 (226)
T 3f2k_A 3 PHELTENQKNRRFEVSSSLILRNHNEPFLDRIVTCDEKWILYD 45 (226)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESB
T ss_pred CccCCHHHHHHHHHHHHHHHhhhcccchhHhEEEeccceEEEe
Confidence 578898865 6999999877632 6899999765544
No 202
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.07 E-value=81 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=12.8
Q ss_pred HHHHHhcCCCEEEEeCCCCC
Q psy1505 28 IFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 28 iaral~~~p~llllDEPt~~ 47 (79)
+..+....|.++++||.-.-
T Consensus 91 ~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHHHHHTCSEEEEEECC---
T ss_pred HHHHHhcCCeEEEEeCcchh
Confidence 44455567999999998653
No 203
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=24.95 E-value=20 Score=26.47 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=25.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
|...+..|||.+.=|.-.+.=..+.+++||+++
T Consensus 147 Pa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AA 179 (554)
T 1yuw_A 147 PAYFNDSQRQATKDAGTIAGLNVLRIINEPTAA 179 (554)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHH
Confidence 557888888887776666655678889999864
No 204
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=24.86 E-value=1e+02 Score=17.57 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=20.7
Q ss_pred HhcCCCEEEEe-CCCCCCCHHHHHHHHHH
Q psy1505 32 VYKNADIYLLD-DPLSAVDMHVGKHLFED 59 (79)
Q Consensus 32 l~~~p~llllD-EPt~~lD~~~~~~i~~~ 59 (79)
+..+++.+++| +-.+.+|......+..+
T Consensus 48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~ 76 (125)
T 2ka5_A 48 LNKGYNKIFLVLSDVESIDSFSLGVIVNI 76 (125)
T ss_dssp TTTTCCEEEEECTTCSCCCHHHHHHHHHH
T ss_pred hhCCCCEEEEECCCCCEEcHHHHHHHHHH
Confidence 34467777777 46778899998888873
No 205
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=24.72 E-value=57 Score=18.11 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=28.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505 34 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78 (79)
Q Consensus 34 ~~p~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~ 78 (79)
.+|+.+++| .....+|......+.+ +...+.+.|..+.+
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~------~~~~~~~~g~~l~l 81 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDM------AVLKFRREGAEVRI 81 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHH------HHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHH------HHHHHHhCCCEEEE
Confidence 578888887 4577889999988888 45556666666543
No 206
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=24.09 E-value=1.9e+02 Score=20.39 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH--h--cCCCEEEEeCCCCCC
Q psy1505 21 KKKNLLDIFKAV--Y--KNADIYLLDDPLSAV 48 (79)
Q Consensus 21 Gqrqrl~iaral--~--~~p~llllDEPt~~l 48 (79)
++.+.+.++..+ + .+|+++++|--++-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 455546777666 3 469999999887764
No 207
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=23.96 E-value=67 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=13.8
Q ss_pred cCCCEEEEeCCCCCCC
Q psy1505 34 KNADIYLLDDPLSAVD 49 (79)
Q Consensus 34 ~~p~llllDEPt~~lD 49 (79)
.+.+++++||---..+
T Consensus 89 ~~~dvViIDEaQF~~~ 104 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD 104 (234)
T ss_dssp TTCSEEEESSGGGCTT
T ss_pred ccCCEEEEEchhhhhh
Confidence 6789999999988865
No 208
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=23.96 E-value=46 Score=24.74 Aligned_cols=12 Identities=50% Similarity=0.636 Sum_probs=11.0
Q ss_pred hcCCCEEEEeCC
Q psy1505 33 YKNADIYLLDDP 44 (79)
Q Consensus 33 ~~~p~llllDEP 44 (79)
+.+|.|+++|-|
T Consensus 231 ien~kIll~~~~ 242 (545)
T 1a6d_A 231 VKNAKIALIDSA 242 (545)
T ss_dssp EEEEEEEEECSC
T ss_pred ecCCEEEEEecC
Confidence 579999999999
No 209
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=23.77 E-value=25 Score=23.95 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
|...+..||+.+.-|.-.+.=+.+.+++||+++
T Consensus 161 P~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aa 193 (394)
T 3qfu_A 161 PAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAA 193 (394)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 566788888877666666666778888998764
No 210
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.70 E-value=82 Score=21.46 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q psy1505 26 LDIFKAVYKNADIYLLDDP 44 (79)
Q Consensus 26 l~iaral~~~p~llllDEP 44 (79)
-.+..+-..+|.+|++||.
T Consensus 167 ~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 167 ALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHhcCCeEEEEeCc
Confidence 3445555678999999997
No 211
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=23.68 E-value=95 Score=16.71 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=28.0
Q ss_pred HHHHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505 28 IFKAVYKNA-DIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77 (79)
Q Consensus 28 iaral~~~p-~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~ 77 (79)
+..++...+ +.+++| .-...+|......+.++ ...+..+|..+.
T Consensus 35 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~------~~~~~~~g~~l~ 80 (110)
T 1sbo_A 35 LRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVI------LKDAKINGKEFI 80 (110)
T ss_dssp HHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHH------HHHHHHTTCEEE
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHH------HHHHHHcCCEEE
Confidence 334444444 777888 56778899999988883 444444554443
No 212
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=22.28 E-value=86 Score=17.14 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=27.0
Q ss_pred HHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHhhhcCcchhhhcCCcee
Q psy1505 28 IFKAVYKN-ADIYLLD-DPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGL 76 (79)
Q Consensus 28 iaral~~~-p~llllD-EPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~ 76 (79)
+..++... ++.+++| .....+|......+..+ ...+..+|..+
T Consensus 34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~------~~~~~~~g~~l 78 (116)
T 1th8_B 34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGR------YKQIKNVGGQM 78 (116)
T ss_dssp HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHH------HHHHHHTTCCE
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHH------HHHHHHhCCeE
Confidence 33444443 6777887 45678899988888883 44444444443
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=21.81 E-value=24 Score=23.94 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=10.3
Q ss_pred hcCCCEEEEeCC
Q psy1505 33 YKNADIYLLDDP 44 (79)
Q Consensus 33 ~~~p~llllDEP 44 (79)
+.++++|++||.
T Consensus 212 ~~~~~lLiiDdi 223 (308)
T 2qgz_A 212 VKNVPVLILDDI 223 (308)
T ss_dssp HHTSSEEEEETC
T ss_pred hcCCCEEEEcCC
Confidence 457899999998
No 214
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=21.31 E-value=68 Score=23.77 Aligned_cols=12 Identities=58% Similarity=0.805 Sum_probs=11.0
Q ss_pred hcCCCEEEEeCC
Q psy1505 33 YKNADIYLLDDP 44 (79)
Q Consensus 33 ~~~p~llllDEP 44 (79)
+.+|.|+++|-|
T Consensus 232 ien~kIll~~~~ 243 (543)
T 1a6d_B 232 VKDAKIALLDAP 243 (543)
T ss_dssp EEEEEEEEESSC
T ss_pred ecCCeEEEEecc
Confidence 578999999999
No 215
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.15 E-value=1e+02 Score=20.07 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=13.6
Q ss_pred CCCEEEEeCCCCCCCHHHHH
Q psy1505 35 NADIYLLDDPLSAVDMHVGK 54 (79)
Q Consensus 35 ~p~llllDEPt~~lD~~~~~ 54 (79)
+++++++||--. ++.....
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve 107 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE 107 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH
T ss_pred CCCEEEEecCcc-CcHHHHH
Confidence 489999999964 6554333
No 216
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=20.90 E-value=76 Score=18.31 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=25.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
..+|...=.|+.+++++|..| ++.++-+.-.|.++
T Consensus 53 ~dypdn~~s~e~rk~amaail-s~~~vn~ca~~~ss 87 (99)
T 1qb5_D 53 KDYPDNVMTAEMRKIAMAAVL-SGMRVNMCASPASS 87 (99)
T ss_dssp SSTTHHHHHHHHHHHHHHHHH-HCCCEEEEECSSSS
T ss_pred CCCChhhhhHHHHHHHHHHHH-cCCeeeeeeCCCCC
Confidence 345556667888999998766 78888887777664
No 217
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=20.48 E-value=1.5e+02 Score=18.56 Aligned_cols=34 Identities=6% Similarity=-0.062 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHH
Q psy1505 19 KKKKKNLLDIFKAVYKNADIYLLDDPLS-AVDMHVGK 54 (79)
Q Consensus 19 SgGqrqrl~iaral~~~p~llllDEPt~-~lD~~~~~ 54 (79)
+.|.-.+. ......+.+++++||.=. ++|.....
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 34444333 333578899999999965 57766553
No 218
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=20.48 E-value=1.1e+02 Score=16.96 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.0
Q ss_pred CCCEEEEeCCCCCCCH
Q psy1505 35 NADIYLLDDPLSAVDM 50 (79)
Q Consensus 35 ~p~llllDEPt~~lD~ 50 (79)
.|+++|+|--..+.|.
T Consensus 60 ~~dlvilD~~l~~~~g 75 (145)
T 3kyj_B 60 NVDLILLDIEMPVMDG 75 (145)
T ss_dssp TCCEEEECTTSCCCTT
T ss_pred CCCEEEEeCCCCCCCH
Confidence 7999999987776654
No 219
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=20.44 E-value=31 Score=25.71 Aligned_cols=34 Identities=6% Similarity=-0.015 Sum_probs=27.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
-|...+..|||.+.=|...+.=..+-+++||+++
T Consensus 142 VPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AA 175 (605)
T 4b9q_A 142 VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175 (605)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 3667899999988888877776778899999976
No 220
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=20.29 E-value=28 Score=26.01 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505 15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47 (79)
Q Consensus 15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~ 47 (79)
|...+..|||.+.=|.-.+.=..+-+++||+++
T Consensus 143 Pa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AA 175 (605)
T 2kho_A 143 PAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175 (605)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 556788888887777666555567789999864
Done!