RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1505
(79 letters)
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 75.6 bits (187), Expect = 8e-19
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 31 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
AVY +ADIYLLDDPLSAVD HVG+H+FE+CI G
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 66.7 bits (163), Expect = 1e-14
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
+AVY N D+YLLDDPLSA+D HVG+ + E+C G
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 65.4 bits (159), Expect = 3e-14
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 22 KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+K + + +AVY NADIYL DDPLSAVD HVGKH+FE I
Sbjct: 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 62.8 bits (153), Expect = 2e-13
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 22 KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
+K + + +AVY N+D+Y+ DDPLSA+D HVG+ +F+ CI
Sbjct: 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 55.8 bits (134), Expect = 8e-11
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 22 KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGI 65
+K + + +AVY N+DIY+ DDPLSA+D HV +F+ C+ +
Sbjct: 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 43.4 bits (102), Expect = 2e-06
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+AVYK+AD+YLLD P + +D+ K +FE C+
Sbjct: 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 42.2 bits (99), Expect = 4e-06
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.5 bits (97), Expect = 6e-06
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+A+Y+N +I LDDP SA+D+H+ HL ++ I
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 38.0 bits (89), Expect = 1e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
+ KK+K+K+K K KK+ + KN+
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 36.1 bits (84), Expect = 5e-04
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KR +KK+K+K+K K KK+ +
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDT 419
Score = 34.9 bits (81), Expect = 0.001
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K+ +KK+K+K+K K KK
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVKK 414
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+++K+K K KK+ + K K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGK 424
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
++ +KK+K+K+K K KK+ ++ +I K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 33.4 bits (77), Expect = 0.005
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK K+ +KK+K+K+K K
Sbjct: 390 KPSKKVLAKRAEKKEKEKEKPK 411
Score = 33.4 bits (77), Expect = 0.005
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K K+K K KK+ + K K+
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRR 426
Score = 33.4 bits (77), Expect = 0.006
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K+ +KK+K+K+K K KK+
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKR 415
Score = 33.0 bits (76), Expect = 0.006
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K K K KK+ + K K++K
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRK 427
Score = 33.0 bits (76), Expect = 0.007
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
K+++K K KK+ + K K++
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRR 426
Score = 33.0 bits (76), Expect = 0.007
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K++ K KK+ + K K++K +
Sbjct: 407 KEKPKVKKRHRDTKNIGKRRKPS 429
Score = 32.2 bits (74), Expect = 0.011
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+ K+ +KK+K+K+K K K
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVK 413
Score = 32.2 bits (74), Expect = 0.013
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KK K+ +KK+K+K+K
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPK 411
Score = 31.8 bits (73), Expect = 0.019
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K K KK+ + K K++K
Sbjct: 408 EKPKVKKRHRDTKNIGKRRKPSG 430
Score = 31.8 bits (73), Expect = 0.021
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+ KK K+ +KK+K+K+K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEK 409
Score = 31.5 bits (72), Expect = 0.026
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K KK K+ +KK+K+K
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEK 407
Score = 31.1 bits (71), Expect = 0.030
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K + KK+ + K K++K
Sbjct: 409 KPKVKKRHRDTKNIGKRRKPSGT 431
Score = 31.1 bits (71), Expect = 0.038
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K K+ +KK+K+K+K K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKV 412
Score = 28.8 bits (65), Expect = 0.24
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K+ K KK K+ +KK+K+
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKE 406
Score = 28.4 bits (64), Expect = 0.26
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KK+ + K K++K +
Sbjct: 410 PKVKKRHRDTKNIGKRRKPSGTS 432
Score = 28.4 bits (64), Expect = 0.29
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++K K KK K+ +KK+K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEK 405
Score = 26.8 bits (60), Expect = 0.91
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K +K+ + K K++K
Sbjct: 411 KVKKRHRDTKNIGKRRKPSGTSE 433
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 34.3 bits (79), Expect = 0.002
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 22 KKNLLDIFKAVYKNADIYLLDDPLSAVD 49
+K + I +A+ NA+I +LDD LSAVD
Sbjct: 456 QKQRISIARALLLNAEILILDDALSAVD 483
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 33.9 bits (79), Expect = 0.002
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 31 AVYKNADIYLLDDPLSAVDMH 51
A+ ++ I +LD+ SA+D
Sbjct: 110 ALLRDPPILILDEATSALDPE 130
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 33.4 bits (77), Expect = 0.004
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+KRKKKKK+KKK KK+KKK +K
Sbjct: 393 QKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.4 bits (77), Expect = 0.005
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KKR++KK +K+KKKKK+KKK K
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKK 407
Score = 32.6 bits (75), Expect = 0.009
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +K+KKKKK+KKK KK+KKK
Sbjct: 391 KPQKRKKKKKRKKKGKKRKKKG 412
Score = 32.2 bits (74), Expect = 0.011
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK++++KK +K+KKKKK+KKK
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKG 405
Score = 32.2 bits (74), Expect = 0.011
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K+K+++KK +K+KKKKK+KKK
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKG 405
Score = 32.2 bits (74), Expect = 0.012
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKK 411
Score = 31.5 bits (72), Expect = 0.023
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+++KKKKK+KKK KK+KKK +
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGR 413
Score = 31.5 bits (72), Expect = 0.023
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+++K +K+KKKKK+KKK KK+K
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKK 410
Score = 31.5 bits (72), Expect = 0.025
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++ KK +K+KKKKK+KKK KK+
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKR 408
Score = 31.1 bits (71), Expect = 0.029
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K+ +KK +K+KKKKK+KKK KK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKR 408
Score = 27.6 bits (62), Expect = 0.47
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K KKK+++KK +K+KKKKK+
Sbjct: 381 KPPKKKREEKKPQKRKKKKKR 401
Score = 25.7 bits (57), Expect = 2.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K K KKK+++KK +K+KKK
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKK 398
Score = 25.3 bits (56), Expect = 3.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K++ K KKK+++KK +K+KK
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKK 397
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 33.6 bits (77), Expect = 0.005
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDM 50
+ L I +A+ +N I +LD+ SA+D
Sbjct: 471 RQRLAIARALLRNPPILILDEATSALDT 498
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 32.2 bits (73), Expect = 0.008
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKN 24
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 0.018
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.053
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 5 KKKKKKKKKKKKKKKKKKKNL 25
K KKKKKK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 29.5 bits (66), Expect = 0.087
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNLLD 27
+K KKKKKK KK KK KK + D
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 31.3 bits (72), Expect = 0.018
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
K +K +KK +K K K +KKK + ++
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 31.7 bits (72), Expect = 0.018
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIF---KAVYKNADIYL-----LDDPLSAVDMHVGKHL 56
++ K+KKKKK KKKK K+LL F + + +++ L P+ + +G++L
Sbjct: 86 NQENKQKKKKKDKKKKSPKSLLLNFVTVEESKPDDEVHEQKSETLSLPIELEEQSMGRYL 145
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 31.2 bits (72), Expect = 0.021
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
+++I +A+ +NA + +LD+P +A+ + LF+ +I + + G+ +IF
Sbjct: 90 MVEIARALARNARLLILDEPTAALTPAEVERLFK------VIRRLRAQGVAVIF 137
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 31.5 bits (72), Expect = 0.022
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDM 50
K KKK K + KK +KKN LD + DI +L+ D
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDD 136
Score = 29.2 bits (66), Expect = 0.15
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59
KK+ K K K KKK K+ LD K K + DD D+ V +D
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Score = 26.1 bits (58), Expect = 1.8
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKA 31
KKK K K K KK L D +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 31.3 bits (72), Expect = 0.023
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
K +KKK+K++ K K K K + +LD FK
Sbjct: 71 KAQKKKEKQEAKAAKAKSKPRLFVLD-FK 98
Score = 31.0 bits (71), Expect = 0.038
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +KKK+K++ K K K K
Sbjct: 68 AWHKAQKKKEKQEAKAAKAKSK 89
Score = 30.2 bits (69), Expect = 0.067
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K +KKK+K++ K K K
Sbjct: 67 KAWHKAQKKKEKQEAKAAKAKS 88
Score = 30.2 bits (69), Expect = 0.068
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K+ K K +KKK+K++ K K
Sbjct: 64 KELKAWHKAQKKKEKQEAKAAKA 86
Score = 29.0 bits (66), Expect = 0.16
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K +KKK+K++ K K K
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAK 87
Score = 29.0 bits (66), Expect = 0.19
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK K K +KKK+K++ K
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAK 85
Score = 28.6 bits (65), Expect = 0.26
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
+ K++ K K +KKK+K++ K ++
Sbjct: 61 LDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 31.3 bits (71), Expect = 0.031
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 4 RKKKKKKKKKKKKKKKKKKKN 24
R +KK K K KK +K KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKP 790
Score = 27.4 bits (61), Expect = 0.63
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 3 KRKKKKKKKKKKKKKKKKKK 22
+ +KK K K KK +K KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKK 789
Score = 27.4 bits (61), Expect = 0.69
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 2 KKRKKKKKKKKKKKKKKKKK 21
+ KK K K KK +K KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKK 789
Score = 27.0 bits (60), Expect = 0.84
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K+ K K KK +K KK K
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAK 793
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K KK +K KK K +K
Sbjct: 775 AKPKAAKKDARKAKKPSAKTQK 796
Score = 26.6 bits (59), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKA 31
K + K KK +K KK K + + KA
Sbjct: 774 KAKPKAAKKDARKAKKPSAKTQKIAAATKA 803
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 30.8 bits (70), Expect = 0.039
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L I +A+ K+A I +LD+ SA+D
Sbjct: 478 LAIARALLKDAPILILDEATSALD 501
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 30.4 bits (69), Expect = 0.041
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KKR K++KKK+KKKKKKK KK N
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGN 107
Score = 28.5 bits (64), Expect = 0.23
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KR+KKK+KKKKKKK KK KK
Sbjct: 88 AKRQKKKQKKKKKKKAKKGNKK 109
Score = 27.3 bits (61), Expect = 0.63
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K KK+ K++KKK+KKKKKKK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKA 103
Score = 26.2 bits (58), Expect = 1.3
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KK+ K++KKK+KKKKKKK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAK 104
Score = 23.9 bits (52), Expect = 9.3
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K+K+KKKKKKK KK KK++K
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEK 112
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 30.2 bits (69), Expect = 0.068
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKK 22
++KR+ KKKKK+KK KK + +K
Sbjct: 732 LEKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 0.29
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKN 24
++++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 30.0 bits (67), Expect = 0.080
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47
K +K KKK+KK+K+K++ K KK ++ FK++ + L D P SA
Sbjct: 198 KSKKPKKKEKKEKEKERDKDKKKEVEGFKSL----LLALDDSPASA 239
Score = 26.2 bits (57), Expect = 2.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK+K++K+K++KKKKKK +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHR 302
Score = 26.2 bits (57), Expect = 2.2
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++R +++ +K K++KKK++K+K
Sbjct: 87 ERRHRQRLEKDKREKKKREKEK 108
Score = 25.8 bits (56), Expect = 2.4
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++R +K K++KKK++K+K+ ++
Sbjct: 91 RQRLEKDKREKKKREKEKRGRR 112
Score = 25.8 bits (56), Expect = 2.7
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNL 25
++ K++KKK++K+K+ +++ +L
Sbjct: 95 EKDKREKKKREKEKRGRRRHHSL 117
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLL 26
+ K K++KKK++K+K+ +++ + L
Sbjct: 93 RLEKDKREKKKREKEKRGRRRHHSL 117
Score = 25.8 bits (56), Expect = 3.1
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +KKK++K+K++KKKKKK
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHH 300
Score = 25.8 bits (56), Expect = 3.1
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++ +++ +K K++KKK++K+K+
Sbjct: 88 RRHRQRLEKDKREKKKREKEKR 109
Score = 25.4 bits (55), Expect = 4.1
Identities = 7/23 (30%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
++ +K K++KKK++K+K+ ++++
Sbjct: 92 QRLEKDKREKKKREKEKRGRRRH 114
Score = 25.0 bits (54), Expect = 5.1
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKK 22
++K K++KKK++K+K+ +++
Sbjct: 94 LEKDKREKKKREKEKRGRRRHH 115
Score = 25.0 bits (54), Expect = 5.3
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K KKKK++K+K++KKKKK
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKK 296
Score = 24.6 bits (53), Expect = 6.0
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K K KKKK++K+K++KKKKKK+
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKH 298
Score = 24.6 bits (53), Expect = 7.0
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++R+ +++ +K K++KKK++K+
Sbjct: 86 EERRHRQRLEKDKREKKKREKE 107
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 29.8 bits (67), Expect = 0.084
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 4 RKKKKKKKKKKKKKKKKKK 22
RKKKKKKK K+KKKKK ++
Sbjct: 684 RKKKKKKKSKEKKKKKNRE 702
Score = 29.8 bits (67), Expect = 0.098
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNL 25
+K+KKKKK K+KKKKK ++ K +
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQI 707
Score = 29.1 bits (65), Expect = 0.20
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 4 RKKKKKKKKKKKKKKKKKKK 23
+KKKKKKK K+KKKKK +
Sbjct: 682 GSRKKKKKKKSKEKKKKKNR 701
Score = 26.8 bits (59), Expect = 1.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 9 KKKKKKKKKKKKKKKNLLDIFKAVY 33
+KKKKKKK K+KKKK + K ++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIH 708
Score = 26.0 bits (57), Expect = 2.5
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
KK+KKK K+KKKKK ++ K+ + L+
Sbjct: 686 KKKKKKSKEKKKKKNREASKQIHALE 711
Score = 24.4 bits (53), Expect = 7.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDI 28
KK+KK K+KKKKK ++ K+ L +I
Sbjct: 687 KKKKKSKEKKKKKNREASKQIHALENI 713
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.1 bits (68), Expect = 0.086
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYL 40
K KK KKKKKKKKK++K + ++
Sbjct: 274 KFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDS 309
Score = 29.7 bits (67), Expect = 0.10
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD 27
M K KK KKKKKKKKK++K ++ L+
Sbjct: 272 MVKFKKPKKKKKKKKKRRKDLDEDELE 298
Score = 28.6 bits (64), Expect = 0.31
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD 27
+ K KK KKKKKKKKK++ LD
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDLD 293
Score = 27.8 bits (62), Expect = 0.54
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
+ K KK KKKKKKKKK++K D
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDED 295
Score = 25.1 bits (55), Expect = 4.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDI 28
+ K KK KKKKKKKKK D+
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 30.0 bits (68), Expect = 0.090
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 37 DIYLLDDPLSAVDMHVGKHL 56
+ LLD+PLSA+D V +HL
Sbjct: 154 GLLLLDEPLSALDARVREHL 173
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 29.8 bits (68), Expect = 0.092
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 35 NADIYLLDDPLSAVDMHVGKHLFEDCIS-----GGII 66
N I++LD+P +A+D LF + I GGI+
Sbjct: 145 NRPIWILDEPTAALDAA-AVALFAELIRAHLAQGGIV 180
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 29.5 bits (67), Expect = 0.11
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 35 NADIYLLDDPLSAVDMHVGKHLFE 58
N D+ LLD+P + VD+ K +++
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYD 180
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 29.4 bits (67), Expect = 0.12
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK K +K K+
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQ 847
Score = 28.6 bits (65), Expect = 0.26
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K +K K++ +K K
Sbjct: 836 KAAVKFSRKTKQQYVASEKDGK 857
Score = 28.6 bits (65), Expect = 0.27
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK K +K K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTK 846
Score = 28.2 bits (64), Expect = 0.37
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K K +K K++ +K+
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKD 855
Score = 27.8 bits (63), Expect = 0.47
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
+ +K K++ +K K
Sbjct: 838 AVKFSRKTKQQYVASEKDGKA 858
Score = 27.8 bits (63), Expect = 0.54
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K +K K++ +K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDG 856
Score = 27.8 bits (63), Expect = 0.55
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KK K +K
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKT 845
Score = 27.8 bits (63), Expect = 0.55
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+ KK K +K K++
Sbjct: 828 PAKDPAGKKAAVKFSRKTKQQY 849
Score = 27.8 bits (63), Expect = 0.55
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK K +K K++
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVA 851
Score = 27.1 bits (61), Expect = 1.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K +K K++
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVAS 852
Score = 26.7 bits (60), Expect = 1.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK K +K K++
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYV 850
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 5 KKKKKKKKKKKKKKKKKKK 23
K +K K++ +K K
Sbjct: 840 KFSRKTKQQYVASEKDGKA 858
Score = 26.7 bits (60), Expect = 1.4
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK K +K K++ +
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASE 853
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/22 (27%), Positives = 6/22 (27%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K R K KK K
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKF 841
Score = 25.9 bits (58), Expect = 2.3
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+ K KK K +
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSR 843
Score = 25.5 bits (57), Expect = 3.6
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K + K KK K
Sbjct: 819 EKLRYLADAPAKDPAGKKAAVK 840
Score = 25.1 bits (56), Expect = 4.7
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K +K + K KK
Sbjct: 817 KPEKLRYLADAPAKDPAGKKA 837
Score = 24.8 bits (55), Expect = 5.6
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K + K KK
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAA 838
Score = 24.4 bits (54), Expect = 7.2
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+ K KK K
Sbjct: 821 LRYLADAPAKDPAGKKAAVKFS 842
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 29.2 bits (66), Expect = 0.13
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 36 ADIYLLDDPLSAVDMHVGKHLFED-----CISGGII 66
A +++LD+P +A+D G L GGI+
Sbjct: 149 APLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 29.1 bits (66), Expect = 0.16
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVD 49
+ + I +A+ K+ I +LD+ SA+D
Sbjct: 144 RQRIAIARALLKDPPILILDEATSALD 170
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 29.0 bits (65), Expect = 0.17
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
K + K +K K+ KK+KK+++K+ LD
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKDELD 49
Score = 28.3 bits (63), Expect = 0.36
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
K K +K K+ KK+KK+++K L D
Sbjct: 25 KDEAKPRKIKRVKKRKKREEKDELDD 50
Score = 25.2 bits (55), Expect = 4.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 4 RKKKKKKKKKKKKKKKKKKK 23
R K + K +K K+ KK+KK
Sbjct: 22 RPVKDEAKPRKIKRVKKRKK 41
Score = 24.4 bits (53), Expect = 7.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+ + K + K +K K+ KK+K
Sbjct: 18 IYGPRPVKDEAKPRKIKRVKKRK 40
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 29.0 bits (66), Expect = 0.18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 35 NADIYLLDDPLSAVDMHVGKHLFE 58
+ D+ LLD+P + VD + ++E
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYE 173
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 29.1 bits (65), Expect = 0.19
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYL 40
K K KK KKK + K + K +K+ D+ +
Sbjct: 160 KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQDLVI 198
Score = 26.4 bits (58), Expect = 1.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK KK + K K K KK KK
Sbjct: 148 KKPKKGQSPKVPKAPKPKKPKK 169
Score = 25.6 bits (56), Expect = 2.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 2 KKRKKKKK----KKKKKKKKKKKKKKN 24
K+ KK KK K K K KK KKK
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKG 171
Score = 24.8 bits (54), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKK 22
K+ + K K K KK KKK
Sbjct: 149 KPKKGQSPKVPKAPKPKKPKKK 170
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 0.21
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 3 KRKKKKKKKKKKKKKKKKK 21
KRK++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 0.32
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 KKKKKKKKKKKKKKKKKKKN 24
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 26.9 bits (60), Expect = 0.83
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 2 KKRKKKKKKKKKKKKKKKK 20
K++++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 26.2 bits (58), Expect = 1.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 6 KKKKKKKKKKKKKKKKKKNL 25
K+K++ KK+KKKK KK L
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 28.4 bits (64), Expect = 0.22
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 AVYKNADIYLLDDPLSAVDMH 51
A+ N D+ LLD+P S +D
Sbjct: 94 ALLLNPDLLLLDEPTSGLDPA 114
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 28.6 bits (64), Expect = 0.25
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK+K + K++KKKKK+KKKKK
Sbjct: 145 KKKKHEDDKERKKKKKEKKKKKK 167
Score = 27.5 bits (61), Expect = 0.49
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK+ + K++KKKKK+KKKKKK
Sbjct: 146 KKKHEDDKERKKKKKEKKKKKKR 168
Score = 25.2 bits (55), Expect = 4.1
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 2 KKRKKKKKKKKKKKKKK 18
K+RKKKKK+KKKKKK+
Sbjct: 153 KERKKKKKEKKKKKKRH 169
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 28.8 bits (65), Expect = 0.25
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L I +A+ K+ I +LD+ SA+D
Sbjct: 480 LAIARALLKDPPILILDEATSALD 503
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 28.5 bits (64), Expect = 0.25
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
+K R ++++ KKKKKKKKKK KKN
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKN 195
Score = 26.5 bits (59), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+++ + KKKKKKKKKK KK
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNAT 198
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 28.6 bits (64), Expect = 0.26
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK+K K KK K K KK + KKK
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKK 112
Score = 27.5 bits (61), Expect = 0.51
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIF 29
KK K KK K K KK + KKK + + F
Sbjct: 93 KKGKSKKNKLKGKKDEDKKKAREGWNNF 120
Score = 27.5 bits (61), Expect = 0.54
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK+ K KK K K KK + KKK
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKKAR 114
Score = 25.2 bits (55), Expect = 4.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 4 RKKKKKKKKKKKKKKKKKKKN 24
+KKK K KK K K KK + K
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKK 111
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 28.5 bits (64), Expect = 0.27
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDM 50
K + I +A+ + I +LD+P S +D+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDI 166
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.5 bits (64), Expect = 0.28
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLL 26
+ KKK + KKK K KK + +L+
Sbjct: 151 ILAEKKKPRSKKKSSKNSKKLRIDLV 176
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.0 bits (63), Expect = 0.31
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDI 28
KK K K+ +K + KKKKKK+ I
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDNPI 110
Score = 26.5 bits (59), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
+K K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.5 bits (59), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 1 MKKRKKKKKKKKKKKKKKKK 20
KK K K+ +K + KKKKKK
Sbjct: 86 SKKAKGKRSRKNQTKKKKKK 105
Score = 25.4 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K+ K K+ +K + KKKKKK N
Sbjct: 86 SKKAKGKRSRKNQTKKKKKKDDN 108
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 0.32
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNAD 37
KK +KK++K +KK +K++ +K +A K A
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 26.4 bits (59), Expect = 1.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+RKK +KK++K +KK +K++
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEA 430
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNAD 37
++K+++K +KK +K++ +K K + K D
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 24.9 bits (55), Expect = 5.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKK 22
+ ++KK +KK++K +KK +K
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEK 427
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 28.3 bits (63), Expect = 0.35
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDM 50
L I +A+ KNA I +LD+ SA+D+
Sbjct: 480 LAIARAILKNAPILVLDEATSALDV 504
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 27.7 bits (62), Expect = 0.38
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
KK+KKKKKKKKKKK KK KK
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 27.0 bits (60), Expect = 0.77
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+K++ K+KK+KKKKKKKKKKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTS 127
Score = 26.6 bits (59), Expect = 0.92
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K ++KK+KKKKKKKKKKK KK
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKK 129
Score = 26.6 bits (59), Expect = 1.0
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K++K+KKKKKKKKKKK KK
Sbjct: 110 KQKKQKKKKKKKKKKKTSKKAA 131
Score = 26.6 bits (59), Expect = 1.1
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+KK+KKKKKKKKKKK KK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKA 130
Score = 26.6 bits (59), Expect = 1.1
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K K+KK+KKKKKKKKKKK K
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSK 128
Score = 26.6 bits (59), Expect = 1.2
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K K K+KK+KKKKKKKKKKK +
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTS 127
Score = 26.2 bits (58), Expect = 1.3
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
KK+KKKKKKKK KK KKKK
Sbjct: 115 KKKKKKKKKKKTSKKAAKKKK 135
Score = 25.8 bits (57), Expect = 2.0
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K+KKKKKKKKK KK KKKK
Sbjct: 114 QKKKKKKKKKKKTSKKAAKKKK 135
Score = 25.0 bits (55), Expect = 3.4
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K+ K+K K+KK+KKKKKKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKK 122
Score = 25.0 bits (55), Expect = 3.5
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+ K+K K+KK+KKKKKKKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKK 123
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 27.9 bits (63), Expect = 0.41
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 30 KAVYKNADIYLLDDPLSAVD 49
+A+ + + LLD+PLSA+D
Sbjct: 143 RALAREPSLLLLDEPLSALD 162
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 28.1 bits (63), Expect = 0.43
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 22 KKNLLDIFKAVYKNADIYLLDDPLSAVD 49
++ + I +A+ K+A I LLD+ SA+D
Sbjct: 481 QRQRIAIARAILKDAPILLLDEATSALD 508
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 27.8 bits (62), Expect = 0.43
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDM 50
I +A+ + + L+D+PL+A+D
Sbjct: 142 IGRALLSSPRLLLMDEPLAALDD 164
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 27.7 bits (61), Expect = 0.50
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMHVGKHLFED 59
I +A+ D+ LLD+PLSA+D ++ ++ E+
Sbjct: 148 IARAIAIEPDVLLLDEPLSALDANIRANMREE 179
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.5 bits (61), Expect = 0.50
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
KK ++ +KK +KK+KK N+L
Sbjct: 55 KKISAEEAEKKLLQKKEKKALTNVLR 80
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 27.5 bits (61), Expect = 0.56
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 28 IFKAVYKNADIYLLDDPLSAVD 49
+ +A+ I LLD+PLSA+D
Sbjct: 111 LARALVFKPKILLLDEPLSALD 132
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 27.5 bits (62), Expect = 0.56
Identities = 12/54 (22%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
+++I +A+ +A + +LD+P +A+ + + LF+ +I + + G+ +I+
Sbjct: 153 MVEIARALSFDARVLILDEPTAALTVKETERLFD------LIRRLKAQGVAIIY 200
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 27.5 bits (61), Expect = 0.62
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K K K KKK K K KK K
Sbjct: 760 TKGKAAKTVKKKSKAKSKKTTKK 782
Score = 27.1 bits (60), Expect = 0.97
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK K KKK K K K KK
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKK 771
Score = 25.9 bits (57), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKN 24
K K KKK K K KK KK+
Sbjct: 763 KAAKTVKKKSKAKSKKTTKKRA 784
Score = 25.6 bits (56), Expect = 3.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K KKK K K KK KK+
Sbjct: 763 KAAKTVKKKSKAKSKKTTKKRA 784
Score = 25.2 bits (55), Expect = 4.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK+ K K K KKK K K
Sbjct: 754 KKKSASTKGKAAKTVKKKSKAK 775
Score = 25.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K K K KKK K K K
Sbjct: 756 KSASTKGKAAKTVKKKSKAKSK 777
Score = 24.4 bits (53), Expect = 8.6
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+K K K K KKK K
Sbjct: 753 AKKKSASTKGKAAKTVKKKSKA 774
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 27.6 bits (62), Expect = 0.63
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 30 KAVYKNADIYLLDDPLSAVDMH 51
+A+ A + LLD+P + +D
Sbjct: 469 RALLSPASLLLLDEPTAHLDAE 490
>gnl|CDD|232871 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis [Cellular processes,
DNA transformation].
Length = 190
Score = 27.1 bits (60), Expect = 0.69
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDD 43
R + + K K + +N D+ ++ +I L+DD
Sbjct: 120 IRLNNETQSKLKATLRFLNLENAFDLKNNSFQGRNIVLVDD 160
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 27.5 bits (61), Expect = 0.69
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKN 24
RK+K +K K KK KKN
Sbjct: 357 ARKRKGDRKGVSHKAKKGGKKN 378
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 27.4 bits (61), Expect = 0.71
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNLLDIF 29
R+KK K K KKK K+K++ IF
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIF 337
Score = 24.7 bits (54), Expect = 6.8
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDD 43
++KK K K KKK + ++ DI D+
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDE 347
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 27.3 bits (61), Expect = 0.72
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
K K +K K ++ +KK KK L + KA+YK
Sbjct: 345 KATAKGAQKVKNRRARKKAKKARLAKVAKALYK 377
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 27.3 bits (61), Expect = 0.75
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
KK+KKK KKKK KK K + FK
Sbjct: 182 KKKKKKKSAKKKKLKKVAAVGMKAISSFFK 211
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 27.3 bits (60), Expect = 0.80
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
K K K+K ++ L I +A+ D+ L+D+P SA+D + + E C+
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 27.2 bits (61), Expect = 0.80
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 31 AVYKNADIYLLDDPLSAVDMHVGKHL 56
A+ + LLD+PLSA+D + + +
Sbjct: 150 ALVPEPKVLLLDEPLSALDAKLREQM 175
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 27.2 bits (61), Expect = 0.82
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+ + + +A+ + I LLD+P SA+DM+ + L E
Sbjct: 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 27.2 bits (61), Expect = 0.83
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
K KK++++KK+KKKK KK
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKK 439
Score = 26.8 bits (60), Expect = 1.0
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KKR+++KK+KKKK KKK++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEE 442
Score = 26.0 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK +K +KK++++KK+KKKK
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKA 434
Score = 26.0 bits (58), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+K+++++KK+KKKK KKK+
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKE 441
Score = 26.0 bits (58), Expect = 2.0
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+ ++ +KK++++KK+KKKK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAG 437
Score = 25.7 bits (57), Expect = 2.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK KK KK +K +KK++++K
Sbjct: 406 KKATKKIKKIVEKAEKKREEEK 427
Score = 25.7 bits (57), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
K +KK++++KK+KKKK
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFA 436
Score = 25.3 bits (56), Expect = 3.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK KK +K +KK++++KK+KK
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKK 431
Score = 24.5 bits (54), Expect = 6.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +K +K +KK++++KK+KKK
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKK 432
Score = 24.5 bits (54), Expect = 6.3
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+++K+KKKK KKK++++++
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEE 446
Score = 24.5 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K+ ++KK+KKKK KKK+++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEE 444
Score = 24.5 bits (54), Expect = 7.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+ KK KK +K +KK++++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEE 426
Score = 24.5 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
++ +KK+KKKK KKK++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEE 444
Score = 24.5 bits (54), Expect = 8.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+ KK +K +KK++++KK+K
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEK 430
Score = 24.5 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K+ +K +KK++++KK+KKKK
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKK 433
Score = 24.1 bits (53), Expect = 9.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK KK +K +KK++++KK
Sbjct: 407 KATKKIKKIVEKAEKKREEEKK 428
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 27.0 bits (60), Expect = 0.84
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
+KK+K+ K K K+ KKKKKK
Sbjct: 84 LKKKKRVKTKAYKEPTKKKKKKDP 107
Score = 25.8 bits (57), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+ +KKK+ K K K+ KKKKK
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKK 104
Score = 24.6 bits (54), Expect = 5.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KKR K K K+ KKKKKK
Sbjct: 87 KKRVKTKAYKEPTKKKKKKDPT 108
Score = 24.3 bits (53), Expect = 7.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+K+R+ ++KK + K +K+K+KKK
Sbjct: 157 LKEREIRRKKIQAKARKRKEKKK 179
Score = 24.3 bits (53), Expect = 7.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++ KKKK+ K K K+ KKKK
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKK 103
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 26.8 bits (60), Expect = 0.92
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KKR+ +K+K ++++K K K
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKA 142
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K K ++++K K K +KK+K
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKP 149
Score = 25.3 bits (56), Expect = 3.1
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K ++++K K K +KK+K +
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRA 151
Score = 25.3 bits (56), Expect = 3.3
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+++K ++++K K K +KK+
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRK 148
Score = 24.9 bits (55), Expect = 5.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K ++++K K K +KK+K +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQ 152
Score = 24.5 bits (54), Expect = 6.9
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+++ KK++ +K+K ++++K
Sbjct: 116 EQQAKKREAAGEKEKAPRRERK 137
Score = 24.1 bits (53), Expect = 9.2
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKN 24
+R +++ KK++ +K+K +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRR 134
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 26.6 bits (60), Expect = 0.96
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 30 KAVYKNADIYLLDDPLSAVDMH 51
+A+ + I LLD+P S +D+
Sbjct: 110 RALAQEPPILLLDEPTSHLDIA 131
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 27.0 bits (60), Expect = 0.97
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 3 KRKKKKKKKKKKKK 16
R KKKKKKK+K
Sbjct: 737 GRSASKKKKKKKRK 750
Score = 24.7 bits (54), Expect = 5.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 10 KKKKKKKKKKKKKKN 24
+ KKKKKKK+K
Sbjct: 737 GRSASKKKKKKKRKG 751
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 26.8 bits (60), Expect = 0.97
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
++++KK KKK L + Y+
Sbjct: 786 EERQEKKAKKKNSGPALLSSALDRLRRRRRGGYQ 819
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 26.9 bits (60), Expect = 1.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K + KKKK K+ K K KK
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVV 276
Score = 25.4 bits (56), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KKRK K++ KKKK K+ K K
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKA 271
Score = 25.0 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLL 26
+K++K K++ KKKK K+ K K L
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 25.0 bits (55), Expect = 4.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKK 22
K+ KKKK K+ K K KK
Sbjct: 254 SKEEIKKKKPKESKGVKALKKV 275
Score = 24.6 bits (54), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K +++ KKKK K+ K K KK
Sbjct: 253 KSKEEIKKKKPKESKGVKALKK 274
Score = 24.6 bits (54), Expect = 6.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIF 29
KK+ K+ K K KK K K + F
Sbjct: 259 KKKKPKESKGVKALKKVVAKGMKKIDSFF 287
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 26.9 bits (60), Expect = 1.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 37 DIYLLDDPLSAVDMHVGKHL 56
+ LLD+P A+D V K L
Sbjct: 157 KVLLLDEPFGALDAKVRKEL 176
>gnl|CDD|225551 COG3006, MukF, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 440
Score = 26.8 bits (59), Expect = 1.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDM 50
K + NLL I A + D++ +D + +
Sbjct: 228 KLQANLLRIQDATIGHDDLHFVDRLVFDLQS 258
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 26.8 bits (60), Expect = 1.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVD 49
+ LL I +A+ ++ I +LD+ S +D
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNID 171
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
+ ++KK+KK+KKK + + ++ KNL + ++
Sbjct: 101 LGRKKKRKKEKKKNQLEYERLLKNLRKLSLILF 133
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 26.6 bits (60), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MKKRKKKKKKKKKKKKKKK 19
+ R + KK K+KKK
Sbjct: 380 AQARLRAAKKVKRKKKTSG 398
Score = 26.2 bits (59), Expect = 1.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLL 26
K + + + KK K+KKK L
Sbjct: 378 KAAQARLRAAKKVKRKKKTSGPAL 401
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 26.8 bits (60), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 28 IFKAVYKNADIYLLDDPLSAVD 49
I +AV + LLD+ LSA+D
Sbjct: 155 IARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 26.4 bits (59), Expect = 1.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 5 KKKKKKKKKKKKKKKKKKKN 24
KK KK KK+K+K++K+ +K
Sbjct: 15 KKAKKAKKEKRKQRKQARKG 34
Score = 26.0 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
KK KK KK+K+K++K+ +K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGA 35
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 5 KKKKKKKKKKKKKKKKKKK 23
KKK KK KK+K+K++K+ +
Sbjct: 14 KKKAKKAKKEKRKQRKQAR 32
Score = 25.6 bits (57), Expect = 2.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK+ KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 26.8 bits (60), Expect = 1.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMH 51
+ +A+ I LLD+ SA+D
Sbjct: 620 LARALLSKPKILLLDEATSALDPE 643
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 26.6 bits (59), Expect = 1.2
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
+++I + + +++ I +LD+P +++ + LF I + + G+G++F
Sbjct: 148 IVEILRGLMRDSRILILDEPTASLTPAETERLF------SRIRELLAQGVGIVF 195
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 26.8 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
+RKKKK++K K+K+ KK K
Sbjct: 19 ERKKKKEEKAKEKELKKLKAA 39
Score = 25.6 bits (56), Expect = 3.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K+KK++K K+K+ KK K +K
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQK 41
Score = 24.5 bits (53), Expect = 6.9
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++ ++KKKK++K K+K+ KK K
Sbjct: 16 EELERKKKKEEKAKEKELKKLK 37
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 26.5 bits (59), Expect = 1.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLD 27
+KKK++KK+++K+ K+ D
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELRED 201
Score = 25.4 bits (56), Expect = 3.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+KKK++KK+++K+ K+
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKEL 198
Score = 25.4 bits (56), Expect = 3.7
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+KKK++KK+++K+ K+ +
Sbjct: 178 SSDSEKKKQRKKQRRKRSKELR 199
Score = 25.4 bits (56), Expect = 4.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 1 MKKRKKKKKKKKKKKKKKKKK 21
KKK++KK+++K+ K+ +
Sbjct: 179 SDSEKKKQRKKQRRKRSKELR 199
Score = 25.0 bits (55), Expect = 4.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD 27
+ +KKK++KK+++K+ K L +
Sbjct: 174 VPGHSSDSEKKKQRKKQRRKRSKELRE 200
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 26.7 bits (59), Expect = 1.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDI 28
+ K++K++K+KK KK+ LLD+
Sbjct: 143 RSKRRKRRKRKKNKKQDLPVLLDL 166
Score = 24.8 bits (54), Expect = 6.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNL 25
R K++K++K+KK KK+ L
Sbjct: 143 RSKRRKRRKRKKNKKQDLPVLL 164
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLL 26
K + +K KKK K KKKK +L
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKKVL 143
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 26.2 bits (57), Expect = 1.4
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
A D+ +LD+ S +D L ++ + + + +I
Sbjct: 73 LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 26.4 bits (59), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
K + I +A+ KN I LLD+ SA+D H + +
Sbjct: 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 26.2 bits (58), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+KRK KK KK KK+K+K
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQK 246
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 26.1 bits (58), Expect = 1.6
Identities = 12/67 (17%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD---------------IFKAVYKNADIYLLDDPL 45
++K K + ++ ++ + + ++LLD + +A+ + ++L+D+PL
Sbjct: 99 LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158
Query: 46 SAVDMHV 52
S +D +
Sbjct: 159 SNLDAKL 165
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 25.9 bits (58), Expect = 1.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 11 KKKKKKKKKKKKKN 24
KKKK KKK KKN
Sbjct: 1 AKKKKTVKKKVKKN 14
Score = 24.0 bits (53), Expect = 9.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1 MKKRKKKKKKKKK 13
KK+K KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 26.3 bits (59), Expect = 1.6
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
++ K A I LLDD S +D L E
Sbjct: 291 AELLKEETGEAPILLLDDVASELDDGRRAALLE 323
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 26.4 bits (59), Expect = 1.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 31 AVYKNADIYLLDDPLSAVDM 50
A+ ++ I LLD+P SA+D
Sbjct: 615 ALLRDPPILLLDEPTSAMDN 634
>gnl|CDD|112684 pfam03882, KicB, KicB killing factor. The kicA and kicB genes are
found upstream of mukB. It has been suggested that the
kicB gene encodes a killing factor and the kicA gene
codes for a protein that suppresses the killing function
of the kicB gene product. It was also demonstrated that
KicA and KicB can function as a post-segregational
killing system, when the genes are transferred from the
E. coli chromosome onto a plasmid.
Length = 440
Score = 26.4 bits (58), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDM 50
K + LL I V + D++ +D + +
Sbjct: 228 KLQAQLLRIQDCVMGHDDLHFIDRLVFDLQS 258
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 26.2 bits (58), Expect = 1.7
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLD 27
+KK+K+KK++ K +KK++LL+
Sbjct: 160 LLRKKEKEKKEQLKIQKKQSLLE 182
Score = 25.1 bits (55), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1 MKKRKKKKKKKKKKKKKKKKK 21
RKK+K+KK++ K +KK+
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQS 179
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 26.2 bits (58), Expect = 1.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47
+ ++ KKK++ + KKKK+ L KAV K D Y+ + LS+
Sbjct: 83 SSLEAEQAKKKEEAEAKKKKEMEEL---KAVQKKIDQYIKEKQLSS 125
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 26.3 bits (59), Expect = 1.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 30 KAVYKNADIYLLDDPLSAVDMH 51
+A+ + + LLD+P +++D H
Sbjct: 498 RALLQPCQLLLLDEPTASLDAH 519
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 26.2 bits (58), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 38 IYLLDDPLSAVDMHVGKHL 56
I LLD+P A+D V K L
Sbjct: 157 ILLLDEPFGALDAQVRKEL 175
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 26.3 bits (58), Expect = 1.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNLLDIFKAV 32
R K +K+KK+ K+ +D +
Sbjct: 434 RAAADTKSAAEKQKKRAKEPFEIDFGAPL 462
Score = 25.9 bits (57), Expect = 2.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMH 51
K +K+KK+ K+ F A + D ++ P A
Sbjct: 435 AAADTKSAAEKQKKRAKEPFEIDFGAPLEEIDFEVIFQPPKANSTL 480
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 26.0 bits (58), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
I KA+Y+ A + +LD+P + + LFE
Sbjct: 151 ILKALYRGARLLILDEPTAVLTPQEADELFE 181
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 25.9 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDI 28
KK +K +K KKKKK++K D+
Sbjct: 192 KKLLEKPEKPKKKKKRRKGFSKDV 215
Score = 24.8 bits (55), Expect = 4.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYL 40
+ KK +K +K KKKKK++ K K+ I +
Sbjct: 189 ELIKKLLEKPEKPKKKKKRR-------KGFSKDVRIAV 219
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 26.0 bits (58), Expect = 2.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMH 51
I +A+ + I LLD+P S +D+
Sbjct: 149 IARALAQETPILLLDEPTSHLDIA 172
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 25.7 bits (57), Expect = 2.1
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 30 KAVYKNADIYLLDDPLS 46
+A+ K + LLD+P +
Sbjct: 103 RALLKKPKLLLLDEPTA 119
>gnl|CDD|217431 pfam03219, TLC, TLC ATP/ADP transporter.
Length = 491
Score = 26.0 bits (58), Expect = 2.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLD 42
KKKKKKK K +L + FK + + YLL
Sbjct: 256 SAKKKKKKKPKMSLKESFKYLLSSR--YLLL 284
Score = 25.3 bits (56), Expect = 3.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
R KKKKKKK K K++ + + Y
Sbjct: 250 DPRLYASAKKKKKKKPKMSLKESFKYLLSSRY 281
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 25.6 bits (57), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDM 50
+ +A+ + D+ LLD+P SA+D
Sbjct: 111 LARALAMDPDVLLLDEPTSALDP 133
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 25.8 bits (57), Expect = 2.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
+++I KA NA I ++D+P S++ HLF II + G G+++
Sbjct: 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT------IIRKLKERGCGIVY 189
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 25.8 bits (57), Expect = 2.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLL 26
+K K++K+ +K KK+++KKK L
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 25.0 bits (55), Expect = 4.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
K +K+ +K KK+++KKKK+ + L
Sbjct: 563 LKEQKRLRKLKKQEEKKKKELEKL 586
Score = 24.6 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLD 27
K+ +K KK+++KKKK+ +K +K +
Sbjct: 567 KRLRKLKKQEEKKKKELEKLEKAKIP 592
Score = 24.6 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLL 26
+KR +K KK+++KKKK+ +K +
Sbjct: 566 QKRLRKLKKQEEKKKKELEKLEKAK 590
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 25.8 bits (57), Expect = 2.3
Identities = 8/36 (22%), Positives = 27/36 (75%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNAD 37
+KR+++++K++KK+++++++K+ + ++ KN
Sbjct: 197 QKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVK 232
Score = 25.8 bits (57), Expect = 2.5
Identities = 7/23 (30%), Positives = 22/23 (95%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+KK K++++K++++++K++KK++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQ 211
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 25.8 bits (57), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
K+ KKKKKKKKKKKKK + +
Sbjct: 52 NKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVV 84
Score = 25.4 bits (56), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKA 31
+ +++K++ K+K KKK KK K +D A
Sbjct: 9 EVKQQKQQNKQKGTKKKNKKSKKDVDDDDA 38
Score = 25.4 bits (56), Expect = 3.8
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
+ K+ KKKKKKKKKKKKKNL + + Y
Sbjct: 51 ENKQNNKKKKKKKKKKKKKNLGEAYDLAYD 80
Score = 24.7 bits (54), Expect = 6.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNA 36
+KKKKKKKKKKKK + D+ A
Sbjct: 55 NNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAA 89
Score = 24.3 bits (53), Expect = 7.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDI 28
+ K++K++ K+K KKK KK+ D+
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDV 33
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 25.9 bits (57), Expect = 2.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 36 ADIYLLDDPLSAVD 49
A I L+D+P SA+D
Sbjct: 183 APILLMDEPFSALD 196
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 25.8 bits (57), Expect = 2.5
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDI 28
+K KKKKKK+KKK+++ K+++K ++I
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 24.7 bits (54), Expect = 6.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
+ KK+K KK+ K + LD F Y
Sbjct: 1563 ESDIKKRKNKKQYKSNTEAELDFFLKRY 1590
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 25.6 bits (57), Expect = 2.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 9 KKKKKKKKKKKKKKKNLLDIF 29
+K KK KK KK K L IF
Sbjct: 343 RKSKKYKKNKKNKWTKALSIF 363
Score = 24.4 bits (54), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 4 RKKKKKKKKKKKK 16
RK KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 24.0 bits (53), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 5 KKKKKKKKKKKKK 17
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 24.0 bits (53), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 KKKKKKKKKKKKK 18
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 24.0 bits (53), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 7 KKKKKKKKKKKKK 19
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 24.0 bits (53), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 8 KKKKKKKKKKKKK 20
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 25.5 bits (56), Expect = 2.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDM 50
L IF + IY+LD+P +A+
Sbjct: 137 LAIFHNRFNGQGIYILDEPEAALSP 161
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 25.7 bits (56), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
K R + K KK KKKK KKK
Sbjct: 115 KNRVESWKDKKNKKKKSAKKK 135
Score = 25.3 bits (55), Expect = 4.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 5 KKKKKKKKKKKKKKKKKK 22
K KK KKKK KKK+ K
Sbjct: 122 KDKKNKKKKSAKKKEAHK 139
Score = 25.3 bits (55), Expect = 4.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 6 KKKKKKKKKKKKKKKKKK 23
K KK KKKK KKK+ K
Sbjct: 122 KDKKNKKKKSAKKKEAHK 139
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 25.6 bits (57), Expect = 2.8
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 18 KKKKKKNLLDIFKAVYK 34
K+K++L + + + K
Sbjct: 446 APKEKESLFQVLRGIRK 462
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 25.8 bits (57), Expect = 2.9
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD 49
++ K K + K+ + +++ ++ + + I ++D LS D
Sbjct: 248 EEDGKYVYKGENKQLTSEEMIEYYEELVEKYPIISIEDGLSEED 291
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 25.4 bits (56), Expect = 2.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 34 KNADIYLLDDPLSAVD 49
K+ADIYLLD+P + +D
Sbjct: 132 KDADIYLLDEPSAYLD 147
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 25.7 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
+ KK +KK KK KK K ++ L
Sbjct: 89 EAEKKGLEKKAKKAIKKGKDEEAL 112
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 25.6 bits (56), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 28 IFKAVYKNADIYLLDDPLSAVD 49
I A+ +NA YL D+P + +D
Sbjct: 82 IAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 25.4 bits (56), Expect = 3.1
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD---------------IFKAVYKNADIYLLDDPL 45
+K KK+ ++K + + +LL+ I +A+ N I LLD+P
Sbjct: 98 KRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157
Query: 46 SAVD 49
SA+D
Sbjct: 158 SALD 161
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 25.3 bits (56), Expect = 3.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKA 31
+ K K+K+ K+KKK+KK+KK I +A
Sbjct: 374 ECGNKYKEKEAKEKKKEKKRKKTWARIAEA 403
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 24.9 bits (55), Expect = 3.5
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
+++K+ +K ++KK K+++K+K
Sbjct: 106 RAEKEKRTRKNREKKFKRRQKEKE 129
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 25.1 bits (56), Expect = 3.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 37 DIYLLDDPLSAVDMH 51
D+ LLD+P SA+D
Sbjct: 151 DVLLLDEPFSALDAL 165
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 24.8 bits (55), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 4 RKKKKKKKKKKKKKKKKKKK 23
RKKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 25.3 bits (56), Expect = 3.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 25 LLDIFKAVYKNADIYLLDDPLSA 47
L++I KA+ K A + +LD+P ++
Sbjct: 151 LVEIAKALNKQARLLILDEPTAS 173
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 25.3 bits (56), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDI 28
KK +KKK KKKK+K+KK ++ + L I
Sbjct: 270 KKKIRKKKIKKKKEKEKKPEENEILERI 297
Score = 24.5 bits (54), Expect = 6.6
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKN 35
+KK+ +KKK KKKK+K+KK ++ +L+ + +
Sbjct: 269 LKKKIRKKKIKKKKEKEKKPEENEILERIENESEL 303
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 25.1 bits (55), Expect = 3.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K K K KK KK
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKM 212
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 25.1 bits (56), Expect = 3.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 35 NADIYLLDDPLSAVDMHVGKHLFE 58
+ DI LLD+P + +D + L E
Sbjct: 152 DPDILLLDEPTAGLDPAGRRELLE 175
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 25.3 bits (56), Expect = 3.8
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNAD 37
++KKK KK +K+ + + L K + ++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSE 116
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 25.2 bits (56), Expect = 3.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
++K +K KKKKKKK K K K +
Sbjct: 679 LEKIQKPKKKKKKKPKTVKPKPRT 702
Score = 24.8 bits (55), Expect = 6.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
K+ K +KK+KKKKK+K+K++ L
Sbjct: 614 KRLNKANEKKEKKKKKQKEKQEEL 637
Score = 24.4 bits (54), Expect = 8.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+++ K +KK+KKKKK+K+K
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQ 634
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 25.0 bits (55), Expect = 3.9
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+K K KKKK KKKK K K KK
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKD 103
Score = 25.0 bits (55), Expect = 4.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K++ K KKKK KKKK K K KK+
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKD 103
Score = 24.3 bits (53), Expect = 6.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K +KKK KKKK K K KK KK+
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKD 107
Score = 24.3 bits (53), Expect = 9.1
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+K+K K KKKK KKKK K K K
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKK 102
Score = 24.3 bits (53), Expect = 9.1
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KKKK KKKK K K KK K
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKK 106
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 25.0 bits (55), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K K K K K K KK +++ K
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPK 118
Score = 25.0 bits (55), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K K K K KK +++ K++ K
Sbjct: 102 KPKPKPKPVKKVEEQPKREVK 122
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 25.3 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVD 49
L I +A+ N D+ L+D+P SA+D
Sbjct: 164 LCIARALATNPDVLLMDEPTSALD 187
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 25.2 bits (56), Expect = 4.1
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 2 KKRKKKKKKKKKKKKKKKKKK 22
+KRK + K++++K+
Sbjct: 483 RKRKSTSSSSSRSTKRRRRKR 503
Score = 25.2 bits (56), Expect = 4.3
Identities = 3/22 (13%), Positives = 13/22 (59%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
++++K + K++++K+
Sbjct: 482 RRKRKSTSSSSSRSTKRRRRKR 503
Score = 24.8 bits (55), Expect = 6.1
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
++RK+K + K++++K
Sbjct: 481 RRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 25.0 bits (55), Expect = 4.3
Identities = 8/24 (33%), Positives = 21/24 (87%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
M +R+KK++++K+K++ +K +++N
Sbjct: 74 MDERRKKRREQKEKEEIEKYREEN 97
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 25.1 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKN 35
+ + KK+K KK+K+ K++ + KA YK
Sbjct: 351 RVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKT 384
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 25.1 bits (55), Expect = 4.7
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK KKKKK+ KK+KK+KK KK+
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKE 175
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 24.5 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
++ + K K+K+KKKKKKK+ ++
Sbjct: 68 EEAVEAKAKEKEKKKKKKKELED 90
Score = 24.1 bits (53), Expect = 8.3
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNLLD 27
R++ + K K+K+KKKKKKK L D
Sbjct: 67 REEAVEAKAKEKEKKKKKKKELED 90
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 24.9 bits (55), Expect = 4.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 4 RKKKKKKKKKKKKKKKKKKKNLLDIFK 30
+KK+ KKK K +K L +I +
Sbjct: 219 LRKKRLLSLFKKKLLKPDRKLLKEILR 245
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 24.9 bits (55), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHV 52
+A+ ++ LLD+P SA+D +
Sbjct: 144 RALAAQPELLLLDEPFSALDRAL 166
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 25.0 bits (55), Expect = 4.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
K + KKK+KKKKK K KK +++ K V + L D P + G +D
Sbjct: 1171 KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEE 1230
Query: 62 SG 63
Sbjct: 1231 QK 1232
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 24.9 bits (54), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K KKK K KK KKK+ K++ N
Sbjct: 210 KYSYKKKLKSKKLKKKQAKREAN 232
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 24.9 bits (55), Expect = 4.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 40 LLDDPLSAVDMHVGKHL 56
LLD+PL A+D+ + K +
Sbjct: 153 LLDEPLGALDLKLRKDM 169
>gnl|CDD|234317 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members
of this protein family are PlsB, glycerol-3-phosphate
O-acyltransferase, present in E. coli and numerous
related species. In many bacteria, PlsB is not found,
and appears to be replaced by a two enzyme system for
1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
system [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 799
Score = 24.9 bits (55), Expect = 5.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 18 KKKKKKNLLDIFKAVYK 34
K+K+K+++ + K + K
Sbjct: 436 KRKEKESVFGVLKTLRK 452
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 25.1 bits (55), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
K+R + ++KKK+KK K +++
Sbjct: 370 KKERPGRYRRKKKEKKAKSERRG 392
Score = 24.7 bits (54), Expect = 5.6
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
+ + ++KKK+KK K +++ +N
Sbjct: 373 RPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 25.1 bits (55), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKA 31
K+K +KKKKKKK+KK+ K + FK
Sbjct: 66 SKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 24.3 bits (53), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNA 36
KK+ +KKKKKKK+KK+ K + + L
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 24.9 bits (54), Expect = 5.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
KR KKKK KK K +K+ K+KN
Sbjct: 67 SGKRVPKKKKIKKPKLRKRTKRKN 90
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 24.6 bits (54), Expect = 5.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 30 KAVYKNADIYLLDDPLSAVD 49
+A+ + DI L+D+ SA+D
Sbjct: 177 RALANDPDILLMDEAFSALD 196
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 24.5 bits (54), Expect = 5.7
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K ++++K K+KKKKKKK+ +N
Sbjct: 69 NKAAEERRKLKEKKKKKKKELEN 91
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 24.5 bits (54), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMHV 52
I +A+ + +LD+P SA+D+ V
Sbjct: 152 IARALIPEPKLLILDEPTSALDVSV 176
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 24.9 bits (55), Expect = 5.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+ K K K + K KK K
Sbjct: 187 LAKHKILIPSLKTRPKGKKYVKI 209
Score = 24.5 bits (54), Expect = 6.2
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 1 MKKRKKKK---KKKKKKKKKKKKKKK 23
+ K K K + K KK K K
Sbjct: 185 LLLAKHKILIPSLKTRPKGKKYVKIK 210
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 24.9 bits (54), Expect = 5.9
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADI 38
+K ++++K++K + K + FK +N
Sbjct: 143 VKTQREEKEEKDFIADCWRNLYKKNEERFKEYLENFKR 180
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 24.9 bits (54), Expect = 5.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADI 38
+KK K KK KKK +D V+ DI
Sbjct: 663 RKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDI 695
Score = 24.9 bits (54), Expect = 6.5
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 4 RKKKKKKKKKKKKKKKKKKK--------NLLDIFKAV 32
RKK K KK KKK K NL DI + V
Sbjct: 663 RKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGV 699
>gnl|CDD|218915 pfam06156, DUF972, Protein of unknown function (DUF972). This
family consists of several hypothetical bacterial
sequences. The function of this family is unknown.
Length = 106
Score = 24.2 bits (53), Expect = 5.9
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
+++ ++++K+K+K KKK + NL +++
Sbjct: 52 LEELEQEQKEKEKGKKKLGEGYDNLARLYQ 81
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 24.5 bits (53), Expect = 6.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 10 KKKKKKKKKKKKKKN 24
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATSP 46
Score = 24.5 bits (53), Expect = 7.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 1 MKKRKKKKKKKKKKKK 16
K KKKKKK+ K
Sbjct: 30 SSKSKKKKKKRSKATS 45
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 24.7 bits (53), Expect = 6.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 1 MKKRKKKKKKKKKKKK 16
MKKR +K KKKK K++
Sbjct: 326 MKKRAEKPKKKKSKRR 341
>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 24.6 bits (55), Expect = 6.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAV 32
++KR ++ +KK K K+ K + LL+
Sbjct: 140 VEKRLERLEKKAKGGDKEAKAELELLEKLLEH 171
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 24.5 bits (54), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAV 48
K++ + K +KK +L IFKA++KN D L +
Sbjct: 195 KERYSEIPKNIEKKLSLKQIFKALFKN-------DQLLIL 227
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 24.7 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLL 26
+ K K K K+ KK K KK N+
Sbjct: 3 LFKLLKLKGKEVASKKSKGSKKLNMS 28
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 24.8 bits (53), Expect = 6.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 2 KKRKKKKKKKKK----KKKKKKKKKKNL---LDIFKAVYKNADIYLLDDPLSAV 48
KKKKKKKKK K K++ K +D+ +V + + L DD L
Sbjct: 105 TPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLFDDTLDDQ 158
Score = 24.4 bits (52), Expect = 7.7
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 62
KKKKKKKKK K K+ I + + + + E+ +S
Sbjct: 105 TPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLFDDTLDDQLEESVS 164
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 24.7 bits (54), Expect = 6.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
KK KK K K K K K K K K
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKP 113
Score = 24.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
K KK KK K K K K K K K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPK 110
Score = 24.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
K++ K +KK KK K K K K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKP 107
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B. This region of DNA
polymerase B appears to consist of more than one
structural domain, possibly including elongation,
DNA-binding and dNTP binding activities.
Length = 458
Score = 24.6 bits (54), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
K+K+KKK K+ K ++ + LLD + K
Sbjct: 129 LAKRKEKKKLMKESKDPEELRTLLDKQQLALK 160
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 24.4 bits (54), Expect = 7.0
Identities = 5/14 (35%), Positives = 13/14 (92%)
Query: 37 DIYLLDDPLSAVDM 50
++ L+D+PL+++D+
Sbjct: 148 ELLLMDEPLASLDL 161
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 24.5 bits (54), Expect = 7.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIF 29
R ++ K+KKKKKKKKKKK+ L +
Sbjct: 79 ADRAEELLKEKKKKKKKKKKKEELREWM 106
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 24.6 bits (53), Expect = 7.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 1 MKKRKKKKKKKKKKKK 16
MKK +K K+ ++
Sbjct: 32 MKKENAIRKLGKEAEE 47
Score = 24.2 bits (52), Expect = 9.6
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 8 KKKKKKKKKKKKKKKKNLLD 27
KK+ +K K+ +++ + +
Sbjct: 33 KKENAIRKLGKEAEEEAMEE 52
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 24.2 bits (53), Expect = 7.4
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 9/40 (22%)
Query: 1 MKKRKKKKKKKKKKKK---------KKKKKKKNLLDIFKA 31
KK K+KKKKKKK+ + KKK+++ +LL F+
Sbjct: 77 EKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEE 116
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 24.2 bits (53), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
K + +K K KKKK K K K N+
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNV 217
Score = 24.2 bits (53), Expect = 8.6
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDD 43
K K K KK K K ++K+K K + + + D+
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDE 92
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 24.6 bits (54), Expect = 7.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 34 KNADIYLLDDPLSAVD 49
+ AD+YLLD+P + +D
Sbjct: 472 READLYLLDEPSAYLD 487
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 24.4 bits (53), Expect = 7.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 19 KKKKKNLLDIFKAVYKNADIYLLDDPLSAV 48
KK NL DI IYLL+DPLS +
Sbjct: 1400 KKISSNLTDI---------IYLLEDPLSGL 1420
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 24.3 bits (53), Expect = 7.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVY 33
+ +K++KKKK KK K+ + LL+ K ++
Sbjct: 64 EEEKEEKKKKTKKVKETTTEWELLNKTKPIW 94
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 24.2 bits (53), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
KR KK K KK + KK+K K L F+ + K
Sbjct: 221 KRIKKIKSKKYHRVHKKEKLKEELKEFEELVK 252
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 24.2 bits (53), Expect = 7.9
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 44 PLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK 79
P++ M +G+ F C GI+ ++ I + K
Sbjct: 124 PINVGRMMLGQDTFLPCTPHGILELLKEYNIDISGK 159
>gnl|CDD|239785 cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate
kinase (NAGK) of the fungal arginine-biosynthetic
pathway (fArgBP). The nuclear-encoded, mitochondrial
polyprotein precursor with an N-terminal NAGK (ArgB)
domain (this CD), a central DUF619 domain, and a
C-terminal reductase domain (ArgC, N-Acetylglutamate
Phosphate Reductase, NAGPR). The precursor is cleaved in
the mitochondria into two distinct enzymes (NAGK-DUF619
and NAGPR). Native molecular weights of these proteins
indicate that the kinase is an octamer whereas the
reductase is a dimer. This CD also includes some
gamma-proteobacteria (Xanthomonas and Xylella) NAG
kinases with an N-terminal NAGK (ArgB) domain (this CD)
and a C-terminal DUF619 domain. The DUF619 domain is
described as a putative distant homolog of the
acetyltransferase, ArgA, predicted to function in NAG
synthase association in fungi. Eukaryotic sequences have
an N-terminal mitochondrial transit peptide. Members of
this NAG kinase domain CD belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 248
Score = 24.3 bits (53), Expect = 8.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 28 IFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI 74
+F+A Y + D Y L ++ V+ K E I G +P++ S
Sbjct: 98 VFEAEYLDKDKYGLVGKITGVN----KAPIEAAIRAGYLPILTSLAE 140
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 24.4 bits (54), Expect = 8.0
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS 46
+ K + KK + L+D +K + K I ++DP
Sbjct: 247 DEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFD 287
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 24.1 bits (53), Expect = 8.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
++++KKK K++KK K++K+ L + +
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEPYG 124
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 24.4 bits (54), Expect = 8.1
Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
Query: 34 KNADIYLLDDPLSA 47
++AD+YLLD+P SA
Sbjct: 470 RDADLYLLDEP-SA 482
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 24.3 bits (53), Expect = 8.2
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA 47
+K KK KK K +K + A D DDPL++
Sbjct: 11 EKISKKAAKKAAAKAEKLRREATAKAAAASLED---EDDPLAS 50
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 24.1 bits (53), Expect = 8.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 5 KKKKKKKKKKKKKKKKKKKNLLDIFKA----VYKNADIY 39
KKK+K++ ++ K+ DI + KN D
Sbjct: 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDEL 197
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 23.8 bits (52), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKN 24
KK++K K ++ K +K++ K K
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQ 62
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 24.3 bits (53), Expect = 9.2
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 3 KRKKKKKKKKKKKKKKKKKKK 23
K KKKKKKKKK KK K KK
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKK 274
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 24.3 bits (52), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 44 PLSAVDMHVGKHLFEDCISGGIIPMINSPG 73
P++ ++ +GK F C GII +I S G
Sbjct: 123 PVNVGNLFIGKDSFVPCTPAGIIELIKSTG 152
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 24.1 bits (53), Expect = 9.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYK 34
K + K +K+K K+ ++ + K Y+
Sbjct: 300 DGTKWEDKSAFQKRKDLKEDPEDADRLIKNTYR 332
>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF. This predicted
GTP-binding protein is found in a single copy in every
complete bacterial genome, and is found in Eukaryotes. A
more distantly related protein, separated from this
model, is found in the archaea. It is known to bind GTP
and double-stranded nucleic acid. It is suggested to
belong to a nucleoprotein complex and act as a
translation factor [Unknown function, General].
Length = 368
Score = 24.0 bits (52), Expect = 10.0
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 3 KRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF 57
+++ + KK + K KK++ LL+I + + D LS ++ + K L
Sbjct: 142 EKRIGRSKKSAEGGKDKKEELLLLEIILPLLNGGQMARHVD-LSKEELILIKSLN 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.139 0.391
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,185,180
Number of extensions: 363506
Number of successful extensions: 9812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6826
Number of HSP's successfully gapped: 1525
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)