RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1505
(79 letters)
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 36.0 bits (83), Expect = 1e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
+ + + +AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 164 RARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 202
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 34.8 bits (80), Expect = 4e-04
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+ + I +A+ +++ I +LD+ SA+D + +
Sbjct: 158 RQRIAIARALLRDSPILILDEATSALDTESERAIQA 193
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.6 bits (69), Expect = 0.012
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+ + + +A+ + + +LDD SA+D + + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 192
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.7 bits (64), Expect = 0.044
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 30 KAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+A+ N I + D+ SA+D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMR 180
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 0.23
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+ + + NA+IY+LDDP+ A+D + +
Sbjct: 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.9 bits (59), Expect = 0.24
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF 78
++I +A+ N + ++D+P++ V + +F + + + GI +
Sbjct: 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN------HVLELKAKGITFLI 205
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.0 bits (57), Expect = 0.41
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLD-------------------IFKAVYKNADIYLL 41
K R ++++K+ + K L + I +A+ N I L
Sbjct: 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 42 DDPLSAVDMHVGKHLFE 58
D P A+D G+ + +
Sbjct: 170 DQPTGALDSKTGEKIMQ 186
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 25.6 bits (54), Expect = 0.66
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
L + + + +LD+P +D + L
Sbjct: 293 LAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 325
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.2 bits (55), Expect = 0.96
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60
+ + I +A+ D+ L D+P SA+D + +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 192
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 23.9 bits (52), Expect = 2.5
Identities = 5/30 (16%), Positives = 19/30 (63%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
++++KK+ ++KK+ + +++ + +K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 23.7 bits (51), Expect = 2.7
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLL 41
K++ + + + K+ ++++L + V + D LL
Sbjct: 48 RKEKSLNNEFIQVIEDIKRDFEESILLESEDVIRIIDDNLL 88
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 23.9 bits (51), Expect = 2.8
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 18 KKKKKKNLLDIFKAVYKNADIYLL 41
++ K+L ++ +++ + +L
Sbjct: 42 PAEEGKSLWELVIEQFEDLLVRIL 65
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.2 bits (50), Expect = 2.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 3 KRKKKKKKKKKKKKKKKK 20
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 22.0 bits (47), Expect = 8.4
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 7 KKKKKKKKKKKKKKKKKNLLDIF 29
+K KKK L F
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQF 24
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 126
Score = 23.4 bits (50), Expect = 2.9
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHL 56
++ + + K + LL N Y + + L+ D+ V
Sbjct: 29 NLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNLY 84
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 23.6 bits (50), Expect = 3.2
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKK 23
+ K K++ + + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 23.4 bits (50), Expect = 3.9
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 23 KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 60
L I +A+ N + +LD+P S +D+ + + +
Sbjct: 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 23.4 bits (50), Expect = 4.1
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKKNL 25
K+R+ ++K ++ K K+K +K+ L
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKERL 332
Score = 22.6 bits (48), Expect = 7.9
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 2 KKRKKKKKKKKKKKKKKKKKKK 23
+KR++ ++K ++ K K+K +K
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEK 329
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.1 bits (50), Expect = 4.2
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
+ + +K+ K++K K K++ + LL +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.1 bits (50), Expect = 4.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 4 RKKKKKKKKKKKKKKKKKK 22
RK K+ +K+K+++ KKK
Sbjct: 143 RKLKQYLSEKRKEQEAKKK 161
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 22.8 bits (49), Expect = 4.6
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 1 MKKRKKKKKKKKKKKK------KKKKKKKNLLDIFKAV 32
KK ++ +++K +K KK KK L ++ KA+
Sbjct: 12 WKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAI 49
>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 23.1 bits (48), Expect = 5.2
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 31 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI 77
A +N + D PL + SG I M PG+G+I
Sbjct: 187 ASKRNITRFDFDAPLMLKTDVFNGGIT---YSGSTISMPGKPGLGII 230
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 22.8 bits (49), Expect = 5.2
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
+ + +A+ D+ L+D+PLS +D + +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 177
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 22.2 bits (47), Expect = 5.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 1 MKKRKKKKKKKKKKKKKKKKK 21
M+K + + +K K KK++
Sbjct: 46 MRKDGIQTRNRKVSSKGKKRR 66
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 22.7 bits (48), Expect = 7.8
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKNLLDIF 29
+ +K++ K K+ + +K ++ F
Sbjct: 215 TVDLEMRKQRNKTTKQVRTIEKITPIESF 243
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 22.1 bits (47), Expect = 9.1
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 1 MKKRKKKKKKKKKKKKKKKKKKKN 24
+K+ + + K+ +K+
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 237
Score = 22.1 bits (47), Expect = 9.8
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 42 DDPLSAVDMHVGKHLFEDCISGGIIPMI 69
D + +H GK L+E +SG + +
Sbjct: 57 DKSMDIDSLHPGKQLYEKMVSGMYLGEL 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.391
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,617
Number of extensions: 14894
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 197
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.9 bits)