Query psy15050
Match_columns 323
No_of_seqs 227 out of 1500
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:09:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 9.1E-66 2E-70 457.4 26.6 258 5-288 2-268 (280)
2 KOG1577|consensus 100.0 9.4E-65 2E-69 450.9 27.0 278 1-287 1-288 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.2E-55 4.8E-60 397.6 28.9 243 16-285 2-253 (267)
4 PRK11565 dkgA 2,5-diketo-D-glu 100.0 7E-54 1.5E-58 389.1 28.2 252 6-285 4-263 (275)
5 COG0667 Tas Predicted oxidored 100.0 8.3E-54 1.8E-58 394.3 26.7 257 6-284 1-309 (316)
6 KOG1575|consensus 100.0 2.4E-52 5.3E-57 378.1 25.9 262 5-286 11-327 (336)
7 TIGR01293 Kv_beta voltage-depe 100.0 1.2E-51 2.6E-56 382.2 26.4 255 8-282 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 2.5E-51 5.4E-56 384.0 27.5 263 4-285 11-334 (346)
9 PRK10625 tas putative aldo-ket 100.0 4.6E-51 9.9E-56 382.6 25.9 272 6-284 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-49 2.5E-54 363.7 28.3 255 8-282 1-285 (285)
11 PRK10376 putative oxidoreducta 100.0 2.6E-49 5.6E-54 362.1 26.7 249 8-284 9-288 (290)
12 PLN02587 L-galactose dehydroge 100.0 1.2E-48 2.7E-53 361.6 27.3 260 8-284 1-300 (314)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 9.1E-48 2E-52 350.8 24.3 246 19-283 1-282 (283)
14 COG4989 Predicted oxidoreducta 100.0 1.2E-46 2.7E-51 321.7 17.0 257 6-283 1-292 (298)
15 PRK14863 bifunctional regulato 100.0 9.8E-46 2.1E-50 338.1 20.7 243 14-280 2-278 (292)
16 COG1453 Predicted oxidoreducta 100.0 1.4E-43 3E-48 318.7 19.2 289 6-322 1-328 (391)
17 KOG1576|consensus 100.0 6.4E-39 1.4E-43 276.3 17.8 263 5-285 21-323 (342)
18 KOG3023|consensus 98.6 1.1E-07 2.5E-12 81.8 7.0 74 139-212 153-227 (285)
19 PF07021 MetW: Methionine bios 92.7 0.86 1.9E-05 38.9 8.6 102 99-218 64-172 (193)
20 TIGR00190 thiC thiamine biosyn 87.6 17 0.00037 34.6 13.1 142 32-218 77-225 (423)
21 PRK08609 hypothetical protein; 87.2 33 0.00072 34.6 16.0 185 32-247 349-554 (570)
22 PRK13352 thiamine biosynthesis 81.8 50 0.0011 31.7 15.8 142 32-218 77-228 (431)
23 COG1748 LYS9 Saccharopine dehy 80.5 11 0.00024 36.0 8.8 78 32-121 79-158 (389)
24 cd03316 MR_like Mandelate race 79.5 54 0.0012 30.6 14.8 147 31-212 140-298 (357)
25 COG1751 Uncharacterized conser 79.1 34 0.00075 28.1 11.5 105 140-258 11-126 (186)
26 COG0635 HemN Coproporphyrinoge 78.7 15 0.00033 35.5 9.4 74 88-167 199-276 (416)
27 cd01965 Nitrogenase_MoFe_beta_ 77.5 33 0.00072 33.1 11.5 111 54-183 62-187 (428)
28 PRK07535 methyltetrahydrofolat 75.6 36 0.00078 30.6 10.3 106 91-217 23-128 (261)
29 PRK08392 hypothetical protein; 75.2 54 0.0012 28.3 18.9 186 32-246 14-209 (215)
30 cd03319 L-Ala-DL-Glu_epimerase 74.8 69 0.0015 29.4 14.8 151 31-217 135-291 (316)
31 PRK08195 4-hyroxy-2-oxovalerat 74.7 75 0.0016 29.8 12.8 36 10-52 10-45 (337)
32 PRK13796 GTPase YqeH; Provisio 73.7 62 0.0013 30.6 12.0 117 32-173 57-179 (365)
33 PRK04452 acetyl-CoA decarbonyl 73.6 38 0.00081 31.5 10.1 116 101-246 83-206 (319)
34 TIGR00381 cdhD CO dehydrogenas 72.8 90 0.0019 29.8 12.9 109 93-217 128-252 (389)
35 PRK05414 urocanate hydratase; 72.6 12 0.00026 36.7 6.7 129 36-189 116-268 (556)
36 TIGR01228 hutU urocanate hydra 72.4 12 0.00026 36.6 6.6 130 36-190 107-260 (545)
37 COG2089 SpsE Sialic acid synth 71.8 84 0.0018 29.3 11.6 114 31-175 89-224 (347)
38 PF03102 NeuB: NeuB family; I 70.7 50 0.0011 29.4 9.9 109 31-169 55-184 (241)
39 COG1140 NarY Nitrate reductase 70.0 2.9 6.3E-05 39.2 1.9 54 153-207 262-317 (513)
40 cd00740 MeTr MeTr subgroup of 69.7 71 0.0015 28.5 10.8 107 90-217 23-131 (252)
41 PRK07945 hypothetical protein; 68.5 1E+02 0.0022 28.8 17.6 186 32-250 111-323 (335)
42 cd03174 DRE_TIM_metallolyase D 65.8 40 0.00087 29.8 8.5 103 90-212 16-135 (265)
43 PF01175 Urocanase: Urocanase; 65.8 16 0.00034 35.9 6.0 131 35-190 105-259 (546)
44 cd01974 Nitrogenase_MoFe_beta 65.7 1.2E+02 0.0026 29.4 12.3 112 52-182 64-191 (435)
45 COG0422 ThiC Thiamine biosynth 65.3 1.3E+02 0.0028 28.7 14.4 160 32-241 78-258 (432)
46 cd01973 Nitrogenase_VFe_beta_l 64.2 1.5E+02 0.0032 29.0 13.5 116 53-183 66-193 (454)
47 TIGR01290 nifB nitrogenase cof 62.5 1.6E+02 0.0034 28.7 12.7 170 90-300 60-272 (442)
48 COG2102 Predicted ATPases of P 61.9 20 0.00042 31.4 5.3 96 139-244 73-177 (223)
49 cd00423 Pterin_binding Pterin 61.3 1.2E+02 0.0026 27.0 12.7 111 90-217 21-132 (258)
50 PF00682 HMGL-like: HMGL-like 60.0 1.2E+02 0.0025 26.4 12.6 98 90-209 11-125 (237)
51 PRK05692 hydroxymethylglutaryl 59.3 1.4E+02 0.0031 27.2 11.2 101 91-210 24-138 (287)
52 cd07944 DRE_TIM_HOA_like 4-hyd 59.2 1.3E+02 0.0029 26.9 10.6 110 89-211 16-128 (266)
53 PLN02746 hydroxymethylglutaryl 58.6 1.5E+02 0.0033 27.8 11.1 100 95-212 69-182 (347)
54 PRK06361 hypothetical protein; 58.5 1.2E+02 0.0025 26.0 15.3 183 32-250 10-200 (212)
55 PRK13602 putative ribosomal pr 58.0 29 0.00062 25.2 5.0 58 148-212 3-60 (82)
56 cd00308 enolase_like Enolase-s 57.8 57 0.0012 28.4 7.9 71 145-217 134-208 (229)
57 cd03315 MLE_like Muconate lact 57.6 1.4E+02 0.003 26.5 14.5 151 32-217 87-243 (265)
58 COG4626 Phage terminase-like p 57.3 50 0.0011 32.9 7.9 77 138-214 409-485 (546)
59 PRK00912 ribonuclease P protei 56.6 1.4E+02 0.003 26.2 15.6 169 32-246 16-202 (237)
60 TIGR01278 DPOR_BchB light-inde 55.5 1.3E+02 0.0029 29.8 10.8 109 55-182 67-192 (511)
61 COG1149 MinD superfamily P-loo 54.9 26 0.00057 31.7 5.1 52 165-218 201-252 (284)
62 PRK13958 N-(5'-phosphoribosyl) 53.2 62 0.0013 28.0 7.1 67 102-188 16-83 (207)
63 PF11242 DUF2774: Protein of u 51.9 20 0.00043 24.5 2.9 21 232-252 16-36 (63)
64 PRK06740 histidinol-phosphatas 51.3 1.5E+02 0.0033 27.6 9.9 23 32-54 61-83 (331)
65 TIGR03217 4OH_2_O_val_ald 4-hy 51.2 2.1E+02 0.0046 26.7 12.2 36 10-52 9-44 (333)
66 PF00809 Pterin_bind: Pterin b 50.0 95 0.0021 26.8 7.9 94 104-214 29-125 (210)
67 cd03322 rpsA The starvation se 49.5 2.3E+02 0.005 26.6 14.0 143 32-214 128-274 (361)
68 cd00739 DHPS DHPS subgroup of 48.9 2E+02 0.0043 25.8 13.8 107 90-213 21-128 (257)
69 TIGR03597 GTPase_YqeH ribosome 48.5 2.4E+02 0.0052 26.6 11.3 84 75-175 90-176 (360)
70 cd02801 DUS_like_FMN Dihydrour 47.8 1.6E+02 0.0035 25.3 9.1 126 31-179 66-207 (231)
71 cd07945 DRE_TIM_CMS Leptospira 47.7 2.2E+02 0.0047 25.9 16.8 38 10-54 4-42 (280)
72 PRK13361 molybdenum cofactor b 47.4 2.3E+02 0.0051 26.1 11.5 104 31-156 47-154 (329)
73 cd07948 DRE_TIM_HCS Saccharomy 47.3 2.1E+02 0.0046 25.6 10.7 104 90-217 19-137 (262)
74 COG2987 HutU Urocanate hydrata 47.1 44 0.00095 32.4 5.5 92 75-189 165-268 (561)
75 PRK05283 deoxyribose-phosphate 46.2 1.6E+02 0.0034 26.5 8.7 74 32-112 146-227 (257)
76 COG1751 Uncharacterized conser 46.1 52 0.0011 27.1 5.0 70 32-109 14-85 (186)
77 cd03318 MLE Muconate Lactonizi 46.0 82 0.0018 29.6 7.4 66 145-212 228-297 (365)
78 cd07943 DRE_TIM_HOA 4-hydroxy- 44.8 2.3E+02 0.0049 25.3 11.7 36 10-52 7-42 (263)
79 PRK01018 50S ribosomal protein 44.2 78 0.0017 23.8 5.6 60 145-211 5-64 (99)
80 CHL00076 chlB photochlorophyll 44.1 3.4E+02 0.0073 27.0 11.9 161 55-243 67-267 (513)
81 cd06543 GH18_PF-ChiA-like PF-C 43.9 2.6E+02 0.0056 25.6 11.7 180 12-218 65-266 (294)
82 PRK12331 oxaloacetate decarbox 43.8 3.1E+02 0.0067 26.9 11.0 97 99-210 31-141 (448)
83 cd07948 DRE_TIM_HCS Saccharomy 42.4 2.5E+02 0.0055 25.1 12.5 37 10-53 7-43 (262)
84 PRK13803 bifunctional phosphor 42.1 2.2E+02 0.0047 29.1 10.0 68 104-189 20-88 (610)
85 TIGR02534 mucon_cyclo muconate 42.0 1E+02 0.0022 29.0 7.4 68 145-214 227-298 (368)
86 PRK15072 bifunctional D-altron 41.9 1.4E+02 0.0029 28.7 8.3 68 145-214 246-317 (404)
87 TIGR02931 anfK_nitrog Fe-only 41.6 3.5E+02 0.0076 26.5 12.8 116 53-182 72-199 (461)
88 COG2200 Rtn c-di-GMP phosphodi 41.4 2.6E+02 0.0055 24.9 10.2 147 35-211 52-212 (256)
89 COG4130 Predicted sugar epimer 41.3 1.1E+02 0.0024 26.8 6.6 77 166-242 50-137 (272)
90 PRK01222 N-(5'-phosphoribosyl) 41.0 1.1E+02 0.0024 26.4 6.9 65 104-188 20-85 (210)
91 PF07994 NAD_binding_5: Myo-in 40.9 35 0.00075 31.4 3.8 136 92-256 131-272 (295)
92 PRK00730 rnpA ribonuclease P; 40.4 1.6E+02 0.0034 23.8 7.1 63 75-154 46-110 (138)
93 PF07287 DUF1446: Protein of u 40.1 83 0.0018 29.8 6.3 89 143-242 10-100 (362)
94 cd04734 OYE_like_3_FMN Old yel 39.8 3.2E+02 0.0069 25.5 14.1 38 145-182 274-312 (343)
95 PF01904 DUF72: Protein of unk 39.6 1.9E+02 0.0041 25.3 8.2 68 46-121 19-96 (230)
96 PRK04390 rnpA ribonuclease P; 39.5 1.8E+02 0.0038 22.7 7.2 64 75-153 44-109 (120)
97 TIGR00126 deoC deoxyribose-pho 39.4 1E+02 0.0022 26.8 6.3 71 32-110 132-205 (211)
98 cd01971 Nitrogenase_VnfN_like 39.3 3.6E+02 0.0077 26.0 10.8 113 53-184 66-192 (427)
99 cd02930 DCR_FMN 2,4-dienoyl-Co 39.3 3.3E+02 0.0071 25.5 13.4 128 33-179 138-300 (353)
100 PRK10415 tRNA-dihydrouridine s 39.1 3.2E+02 0.0069 25.3 12.2 132 31-187 76-224 (321)
101 cd07943 DRE_TIM_HOA 4-hydroxy- 39.1 2.7E+02 0.0059 24.8 9.3 107 90-211 19-131 (263)
102 PLN02363 phosphoribosylanthran 39.0 1.2E+02 0.0025 27.3 6.8 74 91-188 56-130 (256)
103 PF14871 GHL6: Hypothetical gl 38.9 30 0.00066 27.6 2.8 21 195-215 47-67 (132)
104 cd07938 DRE_TIM_HMGL 3-hydroxy 38.6 3E+02 0.0065 24.8 12.5 36 10-52 5-40 (274)
105 cd07939 DRE_TIM_NifV Streptomy 38.1 2.9E+02 0.0063 24.5 12.3 99 90-212 17-130 (259)
106 TIGR02932 vnfK_nitrog V-contai 38.1 4E+02 0.0086 26.1 13.3 117 53-183 69-197 (457)
107 TIGR03677 rpl7ae 50S ribosomal 38.0 1.5E+02 0.0033 23.0 6.5 65 141-211 11-75 (117)
108 COG2185 Sbm Methylmalonyl-CoA 37.7 98 0.0021 25.2 5.5 74 157-241 17-92 (143)
109 PF00682 HMGL-like: HMGL-like 37.6 2.7E+02 0.0059 24.1 10.7 116 32-166 14-132 (237)
110 TIGR01496 DHPS dihydropteroate 37.5 3E+02 0.0065 24.6 14.0 105 90-213 20-126 (257)
111 TIGR02090 LEU1_arch isopropylm 37.0 3.6E+02 0.0079 25.4 11.1 38 10-54 7-44 (363)
112 PRK14017 galactonate dehydrata 36.6 1.3E+02 0.0029 28.4 7.3 68 145-214 217-288 (382)
113 TIGR00737 nifR3_yhdG putative 36.6 3.4E+02 0.0074 24.9 12.5 131 31-186 74-221 (319)
114 PF05690 ThiG: Thiazole biosyn 36.4 2.1E+02 0.0045 25.5 7.6 115 18-158 9-126 (247)
115 cd03325 D-galactonate_dehydrat 36.0 1.9E+02 0.0041 27.1 8.1 66 145-212 216-285 (352)
116 cd02933 OYE_like_FMN Old yello 35.4 3.7E+02 0.0081 25.0 11.7 20 33-52 153-172 (338)
117 cd01966 Nitrogenase_NifN_1 Nit 34.9 1.5E+02 0.0032 28.6 7.3 115 54-183 62-189 (417)
118 TIGR01928 menC_lowGC/arch o-su 34.5 3.7E+02 0.0081 24.7 15.4 149 32-217 134-286 (324)
119 PF01964 ThiC: ThiC family; I 34.2 39 0.00084 32.3 3.0 175 22-241 66-256 (420)
120 PRK03031 rnpA ribonuclease P; 34.2 2.1E+02 0.0046 22.3 6.9 65 75-154 47-114 (122)
121 PRK07003 DNA polymerase III su 33.9 5.7E+02 0.012 27.1 11.4 93 91-207 100-197 (830)
122 COG1358 RPL8A Ribosomal protei 33.8 1.3E+02 0.0029 23.4 5.5 67 139-211 10-76 (116)
123 KOG0369|consensus 33.2 3.9E+02 0.0085 27.7 9.8 149 32-218 43-197 (1176)
124 PRK00499 rnpA ribonuclease P; 33.1 2.2E+02 0.0049 21.8 6.9 64 75-154 38-104 (114)
125 COG2055 Malate/L-lactate dehyd 33.1 3.2E+02 0.0069 25.8 8.7 87 90-210 6-113 (349)
126 PLN02444 HMP-P synthase 33.0 5.3E+02 0.012 26.1 12.3 140 32-218 237-383 (642)
127 PF06506 PrpR_N: Propionate ca 33.0 66 0.0014 26.8 4.1 67 140-211 62-131 (176)
128 PF01248 Ribosomal_L7Ae: Ribos 32.9 1.3E+02 0.0029 21.9 5.3 62 144-211 3-64 (95)
129 TIGR01502 B_methylAsp_ase meth 32.9 3.7E+02 0.008 26.0 9.5 70 143-214 279-357 (408)
130 PRK04175 rpl7ae 50S ribosomal 32.9 1.6E+02 0.0035 23.1 6.0 64 142-211 16-79 (122)
131 cd07940 DRE_TIM_IPMS 2-isoprop 32.3 3.7E+02 0.0079 24.0 15.8 39 10-55 5-43 (268)
132 PRK00164 moaA molybdenum cofac 31.9 4.1E+02 0.0088 24.4 12.8 107 31-156 51-158 (331)
133 cd00405 PRAI Phosphoribosylant 31.6 3.2E+02 0.0069 23.1 11.1 26 145-170 88-113 (203)
134 TIGR03586 PseI pseudaminic aci 31.4 4.4E+02 0.0095 24.6 11.5 108 32-169 77-205 (327)
135 TIGR03569 NeuB_NnaB N-acetylne 31.0 4.5E+02 0.0096 24.6 11.9 111 31-169 75-206 (329)
136 TIGR00676 fadh2 5,10-methylene 31.0 3.9E+02 0.0085 24.0 15.0 156 32-208 15-186 (272)
137 TIGR00677 fadh2_euk methylenet 31.0 4.1E+02 0.0088 24.1 13.6 157 33-208 17-190 (281)
138 PRK09490 metH B12-dependent me 30.6 4.8E+02 0.01 29.2 10.8 59 160-218 434-493 (1229)
139 PF13378 MR_MLE_C: Enolase C-t 30.5 1E+02 0.0023 23.1 4.5 52 163-217 3-57 (111)
140 TIGR00735 hisF imidazoleglycer 30.2 3.9E+02 0.0084 23.6 8.8 64 145-208 188-253 (254)
141 PF04748 Polysacc_deac_2: Dive 30.1 3.7E+02 0.0079 23.3 9.2 93 20-117 62-182 (213)
142 PRK02910 light-independent pro 29.9 5.5E+02 0.012 25.6 10.6 109 55-183 67-193 (519)
143 PRK06683 hypothetical protein; 29.9 1.5E+02 0.0032 21.5 4.9 57 148-211 3-59 (82)
144 TIGR01163 rpe ribulose-phospha 29.6 3.4E+02 0.0074 22.8 8.3 98 91-208 9-107 (210)
145 TIGR01860 VNFD nitrogenase van 29.5 3.7E+02 0.0081 26.3 9.2 112 53-182 106-231 (461)
146 COG2355 Zn-dependent dipeptida 29.0 4.7E+02 0.01 24.3 9.8 110 32-165 149-261 (313)
147 COG2185 Sbm Methylmalonyl-CoA 29.0 3.2E+02 0.0069 22.2 11.6 109 32-175 26-135 (143)
148 PRK14476 nitrogenase molybdenu 28.9 5.1E+02 0.011 25.3 10.0 111 53-182 72-199 (455)
149 TIGR00262 trpA tryptophan synt 28.9 2.6E+02 0.0057 24.9 7.4 68 140-209 70-144 (256)
150 TIGR01862 N2-ase-Ialpha nitrog 28.7 4.3E+02 0.0093 25.7 9.4 112 54-182 98-221 (443)
151 COG3215 PilZ Tfp pilus assembl 28.6 66 0.0014 24.5 2.8 64 35-105 23-106 (117)
152 PRK09284 thiamine biosynthesis 28.6 6.3E+02 0.014 25.5 11.2 140 32-218 232-378 (607)
153 TIGR00048 radical SAM enzyme, 28.2 3.1E+02 0.0068 25.8 8.1 78 140-217 240-334 (355)
154 TIGR02026 BchE magnesium-proto 28.0 5.7E+02 0.012 25.2 10.3 108 138-256 221-337 (497)
155 PRK14461 ribosomal RNA large s 28.0 5.4E+02 0.012 24.5 9.8 145 57-217 183-353 (371)
156 PTZ00106 60S ribosomal protein 27.9 2.3E+02 0.005 21.7 6.0 64 141-211 10-73 (108)
157 KOG1576|consensus 27.8 2E+02 0.0044 26.2 6.2 134 32-208 120-270 (342)
158 cd01981 Pchlide_reductase_B Pc 27.7 5.5E+02 0.012 24.6 13.3 29 155-183 163-197 (430)
159 TIGR02660 nifV_homocitr homoci 27.7 5.2E+02 0.011 24.3 12.9 97 90-210 20-131 (365)
160 PF14502 HTH_41: Helix-turn-he 27.5 1E+02 0.0022 20.1 3.2 31 230-260 7-39 (48)
161 PRK01492 rnpA ribonuclease P; 27.3 3E+02 0.0065 21.4 7.0 62 76-152 47-114 (118)
162 cd00959 DeoC 2-deoxyribose-5-p 27.3 1.6E+02 0.0035 25.1 5.6 71 31-109 130-203 (203)
163 TIGR00216 ispH_lytB (E)-4-hydr 27.3 2.7E+02 0.0059 25.4 7.2 108 146-264 145-267 (280)
164 PLN02321 2-isopropylmalate syn 27.3 7E+02 0.015 25.7 11.2 112 96-238 110-248 (632)
165 PRK07328 histidinol-phosphatas 27.3 4.5E+02 0.0097 23.4 16.3 123 32-163 18-161 (269)
166 TIGR01182 eda Entner-Doudoroff 27.3 2.7E+02 0.0059 24.0 6.9 88 91-210 18-106 (204)
167 COG0761 lytB 4-Hydroxy-3-methy 26.9 2.6E+02 0.0057 25.6 6.9 126 142-283 143-285 (294)
168 PRK02842 light-independent pro 26.8 5.7E+02 0.012 24.6 9.9 109 55-181 78-194 (427)
169 cd01968 Nitrogenase_NifE_I Nit 26.5 4.6E+02 0.01 25.0 9.2 115 50-182 63-188 (410)
170 cd00885 cinA Competence-damage 26.5 2.5E+02 0.0055 23.3 6.5 63 35-103 21-84 (170)
171 PF10668 Phage_terminase: Phag 26.5 59 0.0013 22.2 2.1 17 231-247 24-40 (60)
172 PRK08776 cystathionine gamma-s 26.5 5.7E+02 0.012 24.4 11.4 74 143-217 111-187 (405)
173 PRK10558 alpha-dehydro-beta-de 26.4 2.7E+02 0.0059 24.9 7.0 68 148-216 10-80 (256)
174 cd03466 Nitrogenase_NifN_2 Nit 26.3 5.8E+02 0.012 24.6 9.8 109 54-181 65-184 (429)
175 TIGR01856 hisJ_fam histidinol 25.9 4.6E+02 0.01 23.1 12.9 84 32-120 15-114 (253)
176 PF00875 DNA_photolyase: DNA p 25.8 2.8E+02 0.0061 22.4 6.7 69 144-212 51-124 (165)
177 cd08319 Death_RAIDD Death doma 25.7 65 0.0014 23.5 2.4 71 94-186 11-81 (83)
178 PLN02775 Probable dihydrodipic 25.7 3.7E+02 0.0081 24.6 7.8 71 99-190 68-138 (286)
179 COG3623 SgaU Putative L-xylulo 25.6 90 0.002 27.7 3.6 73 12-86 65-156 (287)
180 PRK04820 rnpA ribonuclease P; 25.1 3.8E+02 0.0082 21.8 7.1 65 75-154 48-114 (145)
181 cd04724 Tryptophan_synthase_al 25.0 3.3E+02 0.0072 23.9 7.3 14 195-208 119-132 (242)
182 TIGR00973 leuA_bact 2-isopropy 24.9 6.9E+02 0.015 24.8 10.8 37 10-53 8-44 (494)
183 PF01118 Semialdhyde_dh: Semia 24.9 89 0.0019 24.1 3.3 25 32-56 77-101 (121)
184 PF03851 UvdE: UV-endonuclease 24.7 4E+02 0.0086 24.2 7.7 79 32-119 45-153 (275)
185 PRK09058 coproporphyrinogen II 24.7 6.5E+02 0.014 24.4 13.0 124 91-214 41-182 (449)
186 PRK01045 ispH 4-hydroxy-3-meth 24.7 3.8E+02 0.0083 24.6 7.7 99 155-264 156-269 (298)
187 PRK06015 keto-hydroxyglutarate 24.7 3.4E+02 0.0074 23.4 7.0 60 144-210 42-102 (201)
188 PF13518 HTH_28: Helix-turn-he 24.7 87 0.0019 19.7 2.7 22 231-253 14-35 (52)
189 PF01791 DeoC: DeoC/LacD famil 24.5 4.7E+02 0.01 22.7 10.0 77 33-119 20-101 (236)
190 PRK12581 oxaloacetate decarbox 24.3 7E+02 0.015 24.6 17.0 113 32-168 105-217 (468)
191 PRK10605 N-ethylmaleimide redu 24.3 6.1E+02 0.013 23.9 13.0 23 158-180 294-316 (362)
192 PLN02540 methylenetetrahydrofo 24.3 7.6E+02 0.016 25.0 14.9 156 33-207 16-197 (565)
193 KOG0023|consensus 24.2 3.7E+02 0.008 25.2 7.4 146 6-208 174-324 (360)
194 COG0426 FpaA Uncharacterized f 24.2 5.4E+02 0.012 24.7 8.7 38 78-118 248-285 (388)
195 cd04761 HTH_MerR-SF Helix-Turn 24.1 1.7E+02 0.0038 17.9 4.1 45 232-281 3-48 (49)
196 TIGR00177 molyb_syn molybdenum 24.0 3.7E+02 0.0081 21.4 7.5 60 35-100 29-89 (144)
197 TIGR03470 HpnH hopanoid biosyn 23.9 5.7E+02 0.012 23.5 12.6 17 140-156 147-163 (318)
198 cd07942 DRE_TIM_LeuA Mycobacte 23.9 5.2E+02 0.011 23.5 8.4 91 95-207 24-135 (284)
199 COG0135 TrpF Phosphoribosylant 23.8 4.8E+02 0.01 22.6 8.4 81 104-210 19-103 (208)
200 PRK08223 hypothetical protein; 23.8 4.2E+02 0.0092 24.2 7.8 151 49-218 4-157 (287)
201 KOG2018|consensus 23.8 1.1E+02 0.0023 28.6 3.8 18 194-211 179-196 (430)
202 cd03323 D-glucarate_dehydratas 23.7 3E+02 0.0066 26.3 7.3 69 144-214 249-321 (395)
203 cd01967 Nitrogenase_MoFe_alpha 23.5 6.3E+02 0.014 23.9 11.6 112 54-182 68-190 (406)
204 cd03770 SR_TndX_transposase Se 23.3 1.5E+02 0.0033 23.5 4.4 52 96-162 54-105 (140)
205 cd03317 NAAAR N-acylamino acid 23.3 4.6E+02 0.0099 24.3 8.3 69 145-215 217-289 (354)
206 TIGR00221 nagA N-acetylglucosa 23.2 6.5E+02 0.014 23.9 10.5 35 143-177 178-212 (380)
207 PRK12360 4-hydroxy-3-methylbut 23.1 4.4E+02 0.0095 24.0 7.7 106 148-264 150-268 (281)
208 TIGR02090 LEU1_arch isopropylm 23.0 6.4E+02 0.014 23.7 9.6 96 90-209 19-129 (363)
209 cd03321 mandelate_racemase Man 22.9 6.2E+02 0.014 23.6 11.7 145 32-211 143-294 (355)
210 KOG0059|consensus 22.5 4.1E+02 0.0088 28.5 8.5 75 90-179 670-770 (885)
211 PRK00396 rnpA ribonuclease P; 22.5 4E+02 0.0086 21.2 6.8 64 75-153 46-111 (130)
212 TIGR02082 metH 5-methyltetrahy 22.4 1.1E+03 0.024 26.3 12.3 96 104-218 378-477 (1178)
213 PRK13753 dihydropteroate synth 22.3 6E+02 0.013 23.1 12.1 107 90-215 22-129 (279)
214 cd00739 DHPS DHPS subgroup of 22.3 5.6E+02 0.012 22.8 10.3 26 141-166 184-209 (257)
215 PRK13352 thiamine biosynthesis 22.3 2.7E+02 0.0058 26.9 6.3 78 229-319 13-112 (431)
216 PLN00191 enolase 22.3 7.5E+02 0.016 24.3 10.0 67 144-212 324-395 (457)
217 cd04740 DHOD_1B_like Dihydroor 22.2 5.8E+02 0.013 22.9 14.7 161 31-206 101-286 (296)
218 cd03327 MR_like_2 Mandelate ra 21.9 6.4E+02 0.014 23.3 14.5 145 32-211 122-279 (341)
219 PF05221 AdoHcyase: S-adenosyl 21.9 2.7E+02 0.0058 25.2 6.0 52 159-212 45-99 (268)
220 KOG0173|consensus 21.9 72 0.0016 28.4 2.3 22 25-46 179-200 (271)
221 smart00148 PLCXc Phospholipase 21.8 4.1E+02 0.0088 21.0 6.8 18 35-52 31-48 (135)
222 TIGR01285 nifN nitrogenase mol 21.8 6.9E+02 0.015 24.2 9.4 113 54-182 72-198 (432)
223 PRK01313 rnpA ribonuclease P; 21.7 4.1E+02 0.0089 21.1 7.0 63 75-153 47-113 (129)
224 COG1121 ZnuC ABC-type Mn/Zn tr 21.7 4.9E+02 0.011 23.3 7.6 50 109-173 156-205 (254)
225 COG2355 Zn-dependent dipeptida 21.6 6.6E+02 0.014 23.3 13.3 120 162-284 78-216 (313)
226 PF09370 TIM-br_sig_trns: TIM- 21.5 1.8E+02 0.004 26.2 4.8 57 142-211 95-156 (268)
227 cd00248 Mth938-like Mth938-lik 21.5 3.6E+02 0.0078 20.5 6.0 51 162-212 36-86 (109)
228 COG1831 Predicted metal-depend 21.5 4E+02 0.0087 24.2 6.9 66 141-206 106-185 (285)
229 PRK05583 ribosomal protein L7A 21.4 3.7E+02 0.008 20.4 6.7 62 143-211 4-65 (104)
230 cd07938 DRE_TIM_HMGL 3-hydroxy 21.4 5.5E+02 0.012 23.1 8.1 98 95-210 21-132 (274)
231 COG3693 XynA Beta-1,4-xylanase 21.1 31 0.00068 31.9 -0.0 52 139-191 201-263 (345)
232 cd05560 Xcc1710_like Xcc1710_l 21.0 3.6E+02 0.0079 20.5 5.9 50 162-212 37-86 (109)
233 TIGR02026 BchE magnesium-proto 21.0 8.1E+02 0.017 24.1 12.0 105 90-215 222-346 (497)
234 TIGR03822 AblA_like_2 lysine-2 20.9 6.6E+02 0.014 23.1 15.8 118 141-279 152-286 (321)
235 PRK10128 2-keto-3-deoxy-L-rham 20.9 4.4E+02 0.0096 23.8 7.3 69 148-216 9-79 (267)
236 PRK08123 histidinol-phosphatas 20.8 6E+02 0.013 22.6 11.1 23 32-54 19-41 (270)
237 PRK05718 keto-hydroxyglutarate 20.8 4.4E+02 0.0095 22.8 7.0 60 144-210 53-113 (212)
238 COG3737 Uncharacterized conser 20.8 2E+02 0.0042 22.7 4.2 48 166-213 56-104 (127)
239 PF00388 PI-PLC-X: Phosphatidy 20.6 77 0.0017 25.4 2.2 16 36-51 30-45 (146)
240 PRK12323 DNA polymerase III su 20.6 4.9E+02 0.011 27.0 8.2 69 91-177 105-175 (700)
241 cd07945 DRE_TIM_CMS Leptospira 20.5 6.4E+02 0.014 22.8 9.6 26 90-115 16-41 (280)
242 PRK10550 tRNA-dihydrouridine s 20.5 6.8E+02 0.015 23.1 13.7 129 31-179 74-218 (312)
243 TIGR02329 propionate_PrpR prop 20.3 2.9E+02 0.0062 27.7 6.5 70 141-213 83-153 (526)
244 PF00491 Arginase: Arginase fa 20.1 5.1E+02 0.011 23.0 7.7 71 97-168 186-256 (277)
245 PRK00507 deoxyribose-phosphate 20.0 4.9E+02 0.011 22.7 7.2 70 31-109 135-208 (221)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=9.1e-66 Score=457.41 Aligned_cols=258 Identities=48% Similarity=0.775 Sum_probs=238.0
Q ss_pred CCCeEECCCCCccCccccccCcCCCCchH-HHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEe
Q psy15050 5 IAPTIQLNNGQEIPALGLGTWQGEPGSGD-VKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITT 83 (323)
Q Consensus 5 ~m~~~~L~tg~~vs~lglGt~~~~~~~~~-~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~t 83 (323)
++.+.+|++|.+||.||||||+.+. .+ +.++|..|++.|+|+||||..||||+.+|+++++ ..++|+++||+|
T Consensus 2 ~~~~~~l~~g~~iP~iGlGt~~~~~--~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~----s~v~ReelFitt 75 (280)
T COG0656 2 MKTKVTLNNGVEIPAIGLGTWQIGD--DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITT 75 (280)
T ss_pred CCceeecCCCCcccCcceEeeecCC--chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh----cCCCHHHeEEEe
Confidence 5678899999999999999999987 44 8999999999999999999999999999999997 347999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec
Q psy15050 84 KVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS 163 (323)
Q Consensus 84 K~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS 163 (323)
|+|+.+.+++.+.+++++||+|||+||||+|+||||.+.. ...+.++|++||+++++||||+||||
T Consensus 76 Kvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~--------------~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 76 KVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNK--------------YVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred ecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCcc--------------CccHHHHHHHHHHHHhcCCccEEEee
Confidence 9999999999999999999999999999999999996510 12278999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCH
Q psy15050 164 NFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSP 243 (323)
Q Consensus 164 n~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~ 243 (323)
||+..+++++++..++.|+++|++|||+.++.+++++|+++||.++|||||++|. .++.++.+.+||++||.|+
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~------~l~~~~~l~~Ia~k~g~t~ 215 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG------KLLDNPVLAEIAKKYGKTP 215 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc------ccccChHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999763 2788899999999999999
Q ss_pred HHHHHHHHhcCCeEEec--cCcC------ceecccCCHHHHHHHhcCCCCCCc
Q psy15050 244 AQVVLRYLVFLMVCRLS--SGEH------KVFVEQGSPTEEHAIQSYSHLPGE 288 (323)
Q Consensus 244 aq~al~w~l~~~~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~~~~~~ 288 (323)
+|++|+|++++|+++|| ++++ ++++|.||++||+.|+++......
T Consensus 216 AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 216 AQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 99999999999999999 5666 788999999999999999886543
No 2
>KOG1577|consensus
Probab=100.00 E-value=9.4e-65 Score=450.91 Aligned_cols=278 Identities=51% Similarity=0.830 Sum_probs=249.9
Q ss_pred CCCCCCCeEECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEE
Q psy15050 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELF 80 (323)
Q Consensus 1 m~~~~m~~~~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~ 80 (323)
|+.+. +.+|++|.+||.||||||+.+. .++.++|..|++.|+||||||..|+||+.+|+||++++.++.++|+++|
T Consensus 1 M~~~~--~~~Ln~G~~mP~iGlGTw~~~~--~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediF 76 (300)
T KOG1577|consen 1 MSSKT--TVKLNNGFKMPIIGLGTWQSPP--GQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIF 76 (300)
T ss_pred CCccc--eEeccCCCccceeeeEecccCh--hhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhhe
Confidence 55433 8899999999999999999665 8999999999999999999999999999999999999988889999999
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCC--CCCccHHHHHHHHHHHHHcCCcc
Q psy15050 81 ITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAK 158 (323)
Q Consensus 81 i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~aL~~l~~~GkIr 158 (323)
|+||+|+..+.++.++.++++||++||+||+|+|++|||.... +..+.+..++ ....+..++|++||+++++|+||
T Consensus 77 iTSKlw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k--~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~r 154 (300)
T KOG1577|consen 77 ITSKLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFK--DSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVR 154 (300)
T ss_pred eeeccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccC--CCCCcccccccccccchHHHHHHHHHHHHHcCCce
Confidence 9999999888999999999999999999999999999998762 1222222111 23457899999999999999999
Q ss_pred EEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy15050 159 SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADK 238 (323)
Q Consensus 159 ~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~ 238 (323)
+||||||+..+|++++..+.++|+++|+++||+.++.+++++|+++||.|.||||||++.. .. .++.++.+.+||++
T Consensus 155 sIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K 231 (300)
T KOG1577|consen 155 SIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKK 231 (300)
T ss_pred EeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999852 11 67889999999999
Q ss_pred cCCCHHHHHHHHHhcCCeEEec--cCcC------ceecccCCHHHHHHHhcCCCCCC
Q psy15050 239 YRKSPAQVVLRYLVFLMVCRLS--SGEH------KVFVEQGSPTEEHAIQSYSHLPG 287 (323)
Q Consensus 239 ~~~s~aq~al~w~l~~~~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~~~~~ 287 (323)
|++|++|++|||++++|+++|| +|++ ++++|.||++|++.|+++....+
T Consensus 232 ~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 232 YNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred hCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 9999999999999999999999 6666 78899999999999998776543
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.2e-55 Score=397.58 Aligned_cols=243 Identities=37% Similarity=0.595 Sum_probs=219.1
Q ss_pred ccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHH
Q psy15050 16 EIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMV 95 (323)
Q Consensus 16 ~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i 95 (323)
+||.||||||+.+. +++.++++.|++.|||+||||+.||+|+.+|++|++ ...+|+++||+||++....+++.+
T Consensus 2 ~vs~lglGt~~~~~--~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~----~~~~R~~v~i~TK~~~~~~~~~~~ 75 (267)
T PRK11172 2 SIPAFGLGTFRLKD--QVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAE----SGVPRDELFITTKIWIDNLAKDKL 75 (267)
T ss_pred CCCCEeeEccccCh--HHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHH----cCCChhHeEEEEEeCCCCCCHHHH
Confidence 68999999998866 789999999999999999999999999999999985 224799999999997666788999
Q ss_pred HHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q psy15050 96 VQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~ 175 (323)
++++++||+|||+||||+|++|||++. ...+..++|++|++|+++||||+||||||+.++++++++
T Consensus 76 ~~~~~~SL~rL~~d~iDl~~lH~~~~~--------------~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 76 IPSLKESLQKLRTDYVDLTLIHWPSPN--------------DEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCCC--------------CCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 999999999999999999999998641 124678999999999999999999999999999999988
Q ss_pred hCCC-cceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHHhcC
Q psy15050 176 CAKI-KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVVLRYLVFL 254 (323)
Q Consensus 176 ~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~al~w~l~~ 254 (323)
.++. .++++|++||++.++.+++++|+++||++++|+||++|. ++.++.+.++|+++|+|++|+||+|++++
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~-------~~~~~~l~~~a~~~~~s~aqval~w~l~~ 214 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGK-------VLKDPVIARIAAKHNATPAQVILAWAMQL 214 (267)
T ss_pred hcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCc-------ccCCHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 7655 689999999999998899999999999999999999984 44567899999999999999999999999
Q ss_pred CeEEec--cCcC------ceecccCCHHHHHHHhcCCCC
Q psy15050 255 MVCRLS--SGEH------KVFVEQGSPTEEHAIQSYSHL 285 (323)
Q Consensus 255 ~~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~~~ 285 (323)
|+++|| ++++ ++.+++||++|+++|+++...
T Consensus 215 ~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 215 GYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred CCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 988888 6665 667789999999999999764
No 4
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=7e-54 Score=389.14 Aligned_cols=252 Identities=38% Similarity=0.650 Sum_probs=224.8
Q ss_pred CCeEECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEecc
Q psy15050 6 APTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKV 85 (323)
Q Consensus 6 m~~~~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~ 85 (323)
.++.+|++|+.||.||||||+.+. +++.++|+.|++.|||+||||+.||+|+.+|++|++. ..+|++++|+||+
T Consensus 4 ~~~~~l~~g~~v~~lglG~~~~~~--~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~----~~~R~~~~i~tK~ 77 (275)
T PRK11565 4 PTVIKLQDGNVMPQLGLGVWQASN--EEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA----SVAREELFITTKL 77 (275)
T ss_pred CceEEcCCCCccCCcceECccCCH--HHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc----CCCHHHEEEEEEe
Confidence 345778999999999999999765 8899999999999999999999999999999999862 2469999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC
Q psy15050 86 WITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF 165 (323)
Q Consensus 86 ~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~ 165 (323)
+. .+++.+++++++||+|||+||||+|++|+|++. .....++|++|++|+++|+||+||||||
T Consensus 78 ~~--~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~---------------~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 140 (275)
T PRK11565 78 WN--DDHKRPREALEESLKKLQLDYVDLYLMHWPVPA---------------IDHYVEAWKGMIELQKEGLIKSIGVCNF 140 (275)
T ss_pred cC--cchHHHHHHHHHHHHHhCCCceEEEEecCCCCC---------------cCcHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 64 367889999999999999999999999998641 1246799999999999999999999999
Q ss_pred CHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHH
Q psy15050 166 NSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQ 245 (323)
Q Consensus 166 ~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq 245 (323)
+++++++++...++.|+++|++|+++.++.+++++|+++||.+++|+||++|. ...+..+.+.++|+++|+|++|
T Consensus 141 ~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~-----~~~~~~~~l~~ia~~~g~s~aq 215 (275)
T PRK11565 141 QIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGG-----KGVFDQKVIRDLADKYGKTPAQ 215 (275)
T ss_pred CHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCC-----cccccCHHHHHHHHHhCCCHHH
Confidence 99999999988888899999999999988899999999999999999999773 1234568899999999999999
Q ss_pred HHHHHHhcCCeEEec--cCcC------ceecccCCHHHHHHHhcCCCC
Q psy15050 246 VVLRYLVFLMVCRLS--SGEH------KVFVEQGSPTEEHAIQSYSHL 285 (323)
Q Consensus 246 ~al~w~l~~~~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~~~ 285 (323)
+||+|++++|.++|| ++++ ++.+++||++|++.|+.+...
T Consensus 216 ~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 216 IVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred HHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 999999999999999 6666 677789999999999998753
No 5
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=8.3e-54 Score=394.31 Aligned_cols=257 Identities=32% Similarity=0.448 Sum_probs=221.0
Q ss_pred CCeEEC-CCCCccCccccccCcCCCC-----chHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCC
Q psy15050 6 APTIQL-NNGQEIPALGLGTWQGEPG-----SGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKR 76 (323)
Q Consensus 6 m~~~~L-~tg~~vs~lglGt~~~~~~-----~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R 76 (323)
|++++| ++|++||+||||||.++.. .+++.++|++|+++||||||||+.|| ||++||++|++. ..|
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~-----~~R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER-----GRR 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc-----CCC
Confidence 789999 8999999999999998641 23566799999999999999999999 699999999973 128
Q ss_pred CcEEEEeccCCC----------CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHH
Q psy15050 77 EELFITTKVWIT----------HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWR 146 (323)
Q Consensus 77 ~~v~i~tK~~~~----------~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
++++|+||++.. +.++++|+++++.||+||||||||+|++|||+. ..+..+++.
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~----------------~~p~~e~~~ 139 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDP----------------ETPIEETLE 139 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC----------------CCCHHHHHH
Confidence 999999999643 358999999999999999999999999999965 578899999
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh--HHHHHHHHhcCcEEEEecCCCCCC--CC--
Q psy15050 147 GMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAYSPLGAPW--TN-- 220 (323)
Q Consensus 147 aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gI~via~spl~~G~--~~-- 220 (323)
+|.+|+++||||+||+||++.+++.++.+.+ .+++++|..||++.++ .+++++|+++||++++||||++|+ .+
T Consensus 140 aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~ 218 (316)
T COG0667 140 ALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYL 218 (316)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcC
Confidence 9999999999999999999999999999886 5679999999999963 569999999999999999999997 11
Q ss_pred --CCCCC-----CCC----------hHHHHHHHHHcCCCHHHHHHHHHhcCCe--EEec--cCcC------ceecccCCH
Q psy15050 221 --PDKPL-----LIN----------DDVLKEIADKYRKSPAQVVLRYLVFLMV--CRLS--SGEH------KVFVEQGSP 273 (323)
Q Consensus 221 --~~~~~-----~l~----------~~~l~~ia~~~~~s~aq~al~w~l~~~~--v~i~--~~~~------~~~~~~Lt~ 273 (323)
++..+ .+. ...++.+|+++|+|++|+||+|++++|. ++|| ++++ ++.++.|++
T Consensus 219 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~ 298 (316)
T COG0667 219 PGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSE 298 (316)
T ss_pred CCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCH
Confidence 11111 110 1458999999999999999999999975 4666 6666 778889999
Q ss_pred HHHHHHhcCCC
Q psy15050 274 TEEHAIQSYSH 284 (323)
Q Consensus 274 ~e~~~l~~~~~ 284 (323)
++++.|++...
T Consensus 299 ~~~~~l~~~~~ 309 (316)
T COG0667 299 EELAALDEISA 309 (316)
T ss_pred HHHHHHHHHhh
Confidence 99999997654
No 6
>KOG1575|consensus
Probab=100.00 E-value=2.4e-52 Score=378.08 Aligned_cols=262 Identities=26% Similarity=0.346 Sum_probs=226.3
Q ss_pred CCCeEEC-CCCCccCccccccCc--C---CCCchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCC
Q psy15050 5 IAPTIQL-NNGQEIPALGLGTWQ--G---EPGSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIK 75 (323)
Q Consensus 5 ~m~~~~L-~tg~~vs~lglGt~~--~---~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~ 75 (323)
-|++++| ++|++||++|||+|. . ..+++++.+++++|+++|+||||||++|| ||..+|++|+++ ..+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~----~~~ 86 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR----GWR 86 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc----CCc
Confidence 4789999 889999999999832 1 22468999999999999999999999999 599999999974 358
Q ss_pred CCcEEEEeccCCC-------CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHH
Q psy15050 76 REELFITTKVWIT-------HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGM 148 (323)
Q Consensus 76 R~~v~i~tK~~~~-------~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 148 (323)
|++++|+||++.. ..+...+...++.|++|||++|||+||+||+++ ..++++++++|
T Consensus 87 R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~----------------~~piee~m~aL 150 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDP----------------MVPIEETMRAL 150 (336)
T ss_pred CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCC----------------CCCHHHHHHHH
Confidence 9999999999642 457788999999999999999999999999966 68899999999
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCC--CCCC-
Q psy15050 149 EKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPW--TNPD- 222 (323)
Q Consensus 149 ~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~--~~~~- 222 (323)
.+++++||||+||+|+++++++.++...++++++.+|++||++.++ .+++++|++.||++++||||++|+ +++.
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~ 230 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKL 230 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccc
Confidence 9999999999999999999999999999988899999999999984 579999999999999999999998 1111
Q ss_pred -------CC--------CCC--------ChHHHHHHHHHcCCCHHHHHHHHHhcCC--eEEec--cCcC------ceecc
Q psy15050 223 -------KP--------LLI--------NDDVLKEIADKYRKSPAQVVLRYLVFLM--VCRLS--SGEH------KVFVE 269 (323)
Q Consensus 223 -------~~--------~~l--------~~~~l~~ia~~~~~s~aq~al~w~l~~~--~v~i~--~~~~------~~~~~ 269 (323)
.. ... .-.++.++|+++|+|++|+||+|++++| +.||| ++.+ .|+.+
T Consensus 231 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~ 310 (336)
T KOG1575|consen 231 GEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSV 310 (336)
T ss_pred ccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhc
Confidence 00 000 0146899999999999999999999997 45677 5666 67789
Q ss_pred cCCHHHHHHHhcCCCCC
Q psy15050 270 QGSPTEEHAIQSYSHLP 286 (323)
Q Consensus 270 ~Lt~~e~~~l~~~~~~~ 286 (323)
.||++++..|++..+..
T Consensus 311 ~Lt~e~~~~l~~~~~~~ 327 (336)
T KOG1575|consen 311 KLTPEEIKELEEIIDKI 327 (336)
T ss_pred cCCHHHHHHHHHhhccc
Confidence 99999999999887653
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.2e-51 Score=382.16 Aligned_cols=255 Identities=26% Similarity=0.370 Sum_probs=212.4
Q ss_pred eEEC-CCCCccCccccccCcC-C--CCchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCCCcEE
Q psy15050 8 TIQL-NNGQEIPALGLGTWQG-E--PGSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKREELF 80 (323)
Q Consensus 8 ~~~L-~tg~~vs~lglGt~~~-~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~ 80 (323)
||+| +||++||+||||||+. + .+.+++.++|+.|+++|||+||||+.|| ||+.||++|++. ..+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~----~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK----GWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc----CCCcccEE
Confidence 5788 8999999999999973 2 2357899999999999999999999998 799999999851 23699999
Q ss_pred EEeccCCC-------CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q psy15050 81 ITTKVWIT-------HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVE 153 (323)
Q Consensus 81 i~tK~~~~-------~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~ 153 (323)
|+||++.. ..+++.++++++.||+|||+||||+|++|||+. ..+.+++|++|++|++
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~----------------~~~~~e~~~aL~~l~~ 140 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDP----------------NTPMEETVRAMTYVIN 140 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCC----------------CCCHHHHHHHHHHHHH
Confidence 99998432 357899999999999999999999999999964 3567899999999999
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCC----CcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCCC--C----
Q psy15050 154 KGLAKSIGVSNFNSGQIKRILDCAK----IKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPWT--N---- 220 (323)
Q Consensus 154 ~GkIr~iGvSn~~~~~l~~l~~~~~----~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~~--~---- 220 (323)
+||||+||||||+.++++++...+. ++|+++|.+||++.++ .+++++|+++||++++|+||++|+. +
T Consensus 141 ~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~ 220 (317)
T TIGR01293 141 QGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG 220 (317)
T ss_pred cCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC
Confidence 9999999999999999887755432 5788999999999874 3799999999999999999999871 1
Q ss_pred -CCCCC-------C-----CC---------hHHHHHHHHHcCCCHHHHHHHHHhcCCe--EEec--cCcC------ceec
Q psy15050 221 -PDKPL-------L-----IN---------DDVLKEIADKYRKSPAQVVLRYLVFLMV--CRLS--SGEH------KVFV 268 (323)
Q Consensus 221 -~~~~~-------~-----l~---------~~~l~~ia~~~~~s~aq~al~w~l~~~~--v~i~--~~~~------~~~~ 268 (323)
+...+ . +. .+.++++|+++|+|++|+||+|++++|. ++|| ++++ ++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~ 300 (317)
T TIGR01293 221 IPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQ 300 (317)
T ss_pred CCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhh
Confidence 11000 0 00 1568999999999999999999999963 4677 6666 5566
Q ss_pred c--cCCHHHHHHHhcC
Q psy15050 269 E--QGSPTEEHAIQSY 282 (323)
Q Consensus 269 ~--~Lt~~e~~~l~~~ 282 (323)
+ +||++|+++|+++
T Consensus 301 ~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 301 VLPKLSSSIIHEIDSI 316 (317)
T ss_pred ccCCCCHHHHHHHHhh
Confidence 5 8999999999864
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.5e-51 Score=384.00 Aligned_cols=263 Identities=24% Similarity=0.314 Sum_probs=218.1
Q ss_pred CCCCeEEC-CCCCccCccccccCc-CC--CCchHHHHHHHHHHHcCCCEEeCCCCCC-----ChHHHHHHHHhHhhcCCC
Q psy15050 4 AIAPTIQL-NNGQEIPALGLGTWQ-GE--PGSGDVKNAVLAAIDAGYRHIDTAEVYQ-----TEGDIGEAIKEKINSGDI 74 (323)
Q Consensus 4 ~~m~~~~L-~tg~~vs~lglGt~~-~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-----~E~~lG~al~~~~~~~~~ 74 (323)
..|+|++| +||++||+||||||+ .+ .+.+++.++|+.|++.|||+||||+.|| +|+.||++|++.. ..
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~---~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF---AA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc---cC
Confidence 46899999 999999999999997 33 2246678999999999999999999998 5999999998521 12
Q ss_pred CCCcEEEEeccCC----C----CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHH
Q psy15050 75 KREELFITTKVWI----T----HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWR 146 (323)
Q Consensus 75 ~R~~v~i~tK~~~----~----~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
.|+++||+||++. . ..+++.+++++++||+|||+||||+|++|||+. ..+.+++|+
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~----------------~~~~~e~~~ 151 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDE----------------NTPMEETAS 151 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCC----------------CCCHHHHHH
Confidence 6999999999752 1 246889999999999999999999999999864 356789999
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHH---hCCCcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCC--
Q psy15050 147 GMEKCVEKGLAKSIGVSNFNSGQIKRILD---CAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPW-- 218 (323)
Q Consensus 147 aL~~l~~~GkIr~iGvSn~~~~~l~~l~~---~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~-- 218 (323)
+|++|+++||||+||||||++++++++.+ ...+++.++|++||++.+. .+++++|+++||++++|+||++|+
T Consensus 152 al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt 231 (346)
T PRK09912 152 ALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT 231 (346)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc
Confidence 99999999999999999999998876554 3456789999999998873 479999999999999999999997
Q ss_pred CC-----CCCC--------------CCCC------hHHHHHHHHHcCCCHHHHHHHHHhcCCe--EEec--cCcC-----
Q psy15050 219 TN-----PDKP--------------LLIN------DDVLKEIADKYRKSPAQVVLRYLVFLMV--CRLS--SGEH----- 264 (323)
Q Consensus 219 ~~-----~~~~--------------~~l~------~~~l~~ia~~~~~s~aq~al~w~l~~~~--v~i~--~~~~----- 264 (323)
.+ |... .++. .+.+.++|+++|+|++|+||+|++++|. .+|| ++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en 311 (346)
T PRK09912 232 GKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEEN 311 (346)
T ss_pred CCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHH
Confidence 11 1110 1111 1578899999999999999999999984 4677 6666
Q ss_pred -cee-cccCCHHHHHHHhcCCCC
Q psy15050 265 -KVF-VEQGSPTEEHAIQSYSHL 285 (323)
Q Consensus 265 -~~~-~~~Lt~~e~~~l~~~~~~ 285 (323)
++. .++||++|++.|+++.+.
T Consensus 312 ~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 312 VQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HhhhcCCCCCHHHHHHHHHhhCc
Confidence 444 589999999999987643
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.6e-51 Score=382.59 Aligned_cols=272 Identities=25% Similarity=0.284 Sum_probs=219.4
Q ss_pred CCeEEC-CCCCccCccccccCcCCC--CchHHHHHHHHHHHcCCCEEeCCCCCC----------ChHHHHHHHHhHhhcC
Q psy15050 6 APTIQL-NNGQEIPALGLGTWQGEP--GSGDVKNAVLAAIDAGYRHIDTAEVYQ----------TEGDIGEAIKEKINSG 72 (323)
Q Consensus 6 m~~~~L-~tg~~vs~lglGt~~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----------~E~~lG~al~~~~~~~ 72 (323)
|+|++| +||++||+||||||+++. +++++.++|+.|++.||||||||+.|| ||..+|++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---- 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---- 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc----
Confidence 679999 999999999999998753 357899999999999999999999997 799999999852
Q ss_pred CCCCCcEEEEeccCCC------------CCChHHHHHHHHHHHHHhCCCceeEEEeecccccC---CCCCCCCCccCCCC
Q psy15050 73 DIKREELFITTKVWIT------------HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK---GKDVHDTSFEGEHN 137 (323)
Q Consensus 73 ~~~R~~v~i~tK~~~~------------~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~---~~~~~~~~~~~~~~ 137 (323)
..|++++|+||++.. ..+++.+++++++||+|||+||||+|++|||+... ++..+++ ....+
T Consensus 77 -~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~--~~~~~ 153 (346)
T PRK10625 77 -GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSW--TDSAP 153 (346)
T ss_pred -CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccccc--ccccC
Confidence 269999999998531 35789999999999999999999999999996521 1100000 00012
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC---C-CcceEeeecccCCcCh--HHHHHHHHhcCcEEEEe
Q psy15050 138 NVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCA---K-IKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAY 211 (323)
Q Consensus 138 ~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~---~-~~~~~~q~~~~~~~~~--~~l~~~~~~~gI~via~ 211 (323)
..++.++|++|++|+++||||+||+|||+.+++++++..+ . ..+.++|++||++.++ .+++++|+++||++++|
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~ 233 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAY 233 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEe
Confidence 3567899999999999999999999999999988776432 2 2578899999998774 58999999999999999
Q ss_pred cCCCCCCC--C------CCC--CCCCC-------------hHHHHHHHHHcCCCHHHHHHHHHhcCCeE--Eec--cCcC
Q psy15050 212 SPLGAPWT--N------PDK--PLLIN-------------DDVLKEIADKYRKSPAQVVLRYLVFLMVC--RLS--SGEH 264 (323)
Q Consensus 212 spl~~G~~--~------~~~--~~~l~-------------~~~l~~ia~~~~~s~aq~al~w~l~~~~v--~i~--~~~~ 264 (323)
+||++|.. + +.. +..+. .+.+.++|+++|+|++|+||+|++++|.+ +|| ++++
T Consensus 234 spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~ 313 (346)
T PRK10625 234 SCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTME 313 (346)
T ss_pred ccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHH
Confidence 99999861 1 111 00111 25788999999999999999999999854 566 6666
Q ss_pred ------ceecccCCHHHHHHHhcCCC
Q psy15050 265 ------KVFVEQGSPTEEHAIQSYSH 284 (323)
Q Consensus 265 ------~~~~~~Lt~~e~~~l~~~~~ 284 (323)
.+.+++||++|++.|+++.+
T Consensus 314 ~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 314 QLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 56778999999999998754
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-49 Score=363.65 Aligned_cols=255 Identities=38% Similarity=0.547 Sum_probs=219.5
Q ss_pred eEEC-CCCCccCccccccCcCCC---CchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCCCcEE
Q psy15050 8 TIQL-NNGQEIPALGLGTWQGEP---GSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKREELF 80 (323)
Q Consensus 8 ~~~L-~tg~~vs~lglGt~~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~ 80 (323)
+++| +||.+||+||||||..+. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. ..|++++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~-----~~R~~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER-----GPREEVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc-----CCcCcEE
Confidence 5788 699999999999998754 457899999999999999999999999 899999999872 1499999
Q ss_pred EEeccCCCC-----CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC
Q psy15050 81 ITTKVWITH-----FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKG 155 (323)
Q Consensus 81 i~tK~~~~~-----~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~G 155 (323)
|+||++... .+++.+++++++||++||+||||+|+||+|+.. .....++|++|++++++|
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~---------------~~~~~~~~~~l~~l~~~G 140 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPD---------------TPDIEETLRALEELVKEG 140 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCC---------------CCCHHHHHHHHHHHHHcC
Confidence 999998653 589999999999999999999999999999652 124789999999999999
Q ss_pred CccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChH--HHHHHHHhcCcEEEEecCCCCCCCC--CCC-CC---CC
Q psy15050 156 LAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQR--KLIDFCKKHNITVTAYSPLGAPWTN--PDK-PL---LI 227 (323)
Q Consensus 156 kIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~--~l~~~~~~~gI~via~spl~~G~~~--~~~-~~---~l 227 (323)
+||+||||||+.+.+.++++.+..+|+++|++||++.+.. +++++|+++||++++|+||++|... +.. +. ..
T Consensus 141 ~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~ 220 (285)
T cd06660 141 KIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGD 220 (285)
T ss_pred CccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhh
Confidence 9999999999999999999987778999999999999865 4999999999999999999998721 111 00 01
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHHhcCC--eEEec--cCcC------ceecccCCHHHHHHHhcC
Q psy15050 228 NDDVLKEIADKYRKSPAQVVLRYLVFLM--VCRLS--SGEH------KVFVEQGSPTEEHAIQSY 282 (323)
Q Consensus 228 ~~~~l~~ia~~~~~s~aq~al~w~l~~~--~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~ 282 (323)
....+..+++++++|++|+|++|++++| .++++ ++++ ++..++||+++++.|+++
T Consensus 221 ~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 221 LLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 2367889999999999999999999995 44555 6666 566789999999999863
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-49 Score=362.05 Aligned_cols=249 Identities=25% Similarity=0.303 Sum_probs=209.5
Q ss_pred eEECCCCCccCccccccCcCCC--------CchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCC
Q psy15050 8 TIQLNNGQEIPALGLGTWQGEP--------GSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKR 76 (323)
Q Consensus 8 ~~~L~tg~~vs~lglGt~~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R 76 (323)
+++|+ |++||+||||||+++. +++++.++|+.|++.|||+||||+.|| +|+.+|++++. .|
T Consensus 9 ~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R 80 (290)
T PRK10376 9 TFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YP 80 (290)
T ss_pred ceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CC
Confidence 45566 9999999999998642 346789999999999999999999998 48899999963 58
Q ss_pred CcEEEEeccCC---------CCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHH
Q psy15050 77 EELFITTKVWI---------THFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRG 147 (323)
Q Consensus 77 ~~v~i~tK~~~---------~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 147 (323)
+++||+||++. ...+++.+++++++||+|||+||||+|++|++..... | ....+.++|++
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~----p-------~~~~~~~~~~~ 149 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG----P-------AEGSIEEPLTV 149 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCC----C-------CCCCHHHHHHH
Confidence 99999999843 3467889999999999999999999999998632100 0 02347889999
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh-HHHHHHHHhcCcEEEEecCCCCCCCCCCCCCC
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ-RKLIDFCKKHNITVTAYSPLGAPWTNPDKPLL 226 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gI~via~spl~~G~~~~~~~~~ 226 (323)
|++|+++||||+||||||+.++++++.+.+. +.++|++||++.+. .+++++|+++||++++|+||+++. .
T Consensus 150 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~-------~ 220 (290)
T PRK10376 150 LAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFT-------P 220 (290)
T ss_pred HHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCC-------h
Confidence 9999999999999999999999999887764 58899999998874 679999999999999999998542 1
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHHhcCC--eEEec--cCcC------ceecccCCHHHHHHHhcCCC
Q psy15050 227 INDDVLKEIADKYRKSPAQVVLRYLVFLM--VCRLS--SGEH------KVFVEQGSPTEEHAIQSYSH 284 (323)
Q Consensus 227 l~~~~l~~ia~~~~~s~aq~al~w~l~~~--~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~~ 284 (323)
...+.+.++|+++++|++|+||+|+++++ +++|| ++++ ++.+++|+++|++.|+++.+
T Consensus 221 ~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 221 LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 23578999999999999999999999873 45677 6666 66778999999999998754
No 12
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-48 Score=361.59 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=209.9
Q ss_pred eEEC-CCCCccCccccccCcCC-----CCchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCCCc
Q psy15050 8 TIQL-NNGQEIPALGLGTWQGE-----PGSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKREE 78 (323)
Q Consensus 8 ~~~L-~tg~~vs~lglGt~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~ 78 (323)
||+| +||++||.||||||+++ .+++++.++|+.|++.|||+||||+.|| +|..+|++|++. +.+|++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~----~~~R~~ 76 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL----GIPREK 76 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC----CCCcce
Confidence 5788 89999999999999764 2357889999999999999999999997 499999999862 247999
Q ss_pred EEEEeccCC----CCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc
Q psy15050 79 LFITTKVWI----THFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK 154 (323)
Q Consensus 79 v~i~tK~~~----~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~ 154 (323)
+||+||++. ..++++.+++++++||+|||+||||+|++|+|+.. .....+.++|++|++|+++
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~-------------~~~~~~~~~~~~l~~l~~~ 143 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFG-------------SLDQIVNETIPALQKLKES 143 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCc-------------chhhhHHHHHHHHHHHHHC
Confidence 999999974 24689999999999999999999999999998531 1123467899999999999
Q ss_pred CCccEEEecCCCHHHHHHHHHhC---CCcceEeeecccCCcCh-HHHHHHHHhcCcEEEEecCCCCCCCC-CCCCCCC-C
Q psy15050 155 GLAKSIGVSNFNSGQIKRILDCA---KIKPVNLQIEVHPYLNQ-RKLIDFCKKHNITVTAYSPLGAPWTN-PDKPLLI-N 228 (323)
Q Consensus 155 GkIr~iGvSn~~~~~l~~l~~~~---~~~~~~~q~~~~~~~~~-~~l~~~~~~~gI~via~spl~~G~~~-~~~~~~l-~ 228 (323)
||||+||+|||++++++.+.+.. .+++..+|+.|++..+. .+++++|+++||++++|+||++|... ...+... .
T Consensus 144 Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~ 223 (314)
T PLN02587 144 GKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPA 223 (314)
T ss_pred CCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCC
Confidence 99999999999998887776543 23455567888876652 58999999999999999999999711 1111110 0
Q ss_pred -------hHHHHHHHHHcCCCHHHHHHHHHhcCCeE--Eec--cCcC------ceec----ccCCHHHHHHHhcCCC
Q psy15050 229 -------DDVLKEIADKYRKSPAQVVLRYLVFLMVC--RLS--SGEH------KVFV----EQGSPTEEHAIQSYSH 284 (323)
Q Consensus 229 -------~~~l~~ia~~~~~s~aq~al~w~l~~~~v--~i~--~~~~------~~~~----~~Lt~~e~~~l~~~~~ 284 (323)
.+.++++|+++++|++|+||+|++++|.+ +|+ ++++ ++.. ++|+++++++|+++..
T Consensus 224 ~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 224 PPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 14577899999999999999999999853 566 6666 3322 3799999999998765
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9.1e-48 Score=350.77 Aligned_cols=246 Identities=31% Similarity=0.536 Sum_probs=203.1
Q ss_pred ccccccCcCC---CCchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCCCcEEEEecc-----CC
Q psy15050 19 ALGLGTWQGE---PGSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKREELFITTKV-----WI 87 (323)
Q Consensus 19 ~lglGt~~~~---~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~i~tK~-----~~ 87 (323)
+||||||+.+ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|++ ...+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccc
Confidence 5899999874 3468899999999999999999999993 69999999997 34689999999999 45
Q ss_pred CCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCH
Q psy15050 88 THFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNS 167 (323)
Q Consensus 88 ~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~ 167 (323)
...+++.+++++++||++||+||||+|++|+|+.. .....++|++|++|+++|+||+||||||++
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 141 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS---------------EDALEEVWEALEELKKEGKIRHIGVSNFSP 141 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT---------------SSHHHHHHHHHHHHHHTTSEEEEEEES--H
T ss_pred ccccccccccccccccccccccchhcccccccccc---------------ccccchhhhhhhhccccccccccccccccc
Confidence 57899999999999999999999999999999762 124899999999999999999999999999
Q ss_pred HHHHHHHHhCCCcceEeeecccCCc--ChHHHHHHHHhcCcEEEEecCCCCCCC--CCC----CCC-------CCChHHH
Q psy15050 168 GQIKRILDCAKIKPVNLQIEVHPYL--NQRKLIDFCKKHNITVTAYSPLGAPWT--NPD----KPL-------LINDDVL 232 (323)
Q Consensus 168 ~~l~~l~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gI~via~spl~~G~~--~~~----~~~-------~l~~~~l 232 (323)
+.++++.....++|+++|++||++. ...+++++|+++||++++|+||++|.. ... .+. ....+.+
T Consensus 142 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (283)
T PF00248_consen 142 EQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADAL 221 (283)
T ss_dssp HHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhh
Confidence 9999997778889999999999993 368999999999999999999999871 111 000 1345789
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC--eEEec--cCcC------ceecccCCHHHHHHHhcCC
Q psy15050 233 KEIADKYRKSPAQVVLRYLVFLM--VCRLS--SGEH------KVFVEQGSPTEEHAIQSYS 283 (323)
Q Consensus 233 ~~ia~~~~~s~aq~al~w~l~~~--~v~i~--~~~~------~~~~~~Lt~~e~~~l~~~~ 283 (323)
.++++++|+|++|+||+|+++++ .++|+ ++++ ++.+++||++|++.|+++.
T Consensus 222 ~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 222 RELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999764 45666 6666 6667899999999999863
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=321.66 Aligned_cols=257 Identities=25% Similarity=0.336 Sum_probs=222.8
Q ss_pred CCeEEC-CCCCccCccccccCcCCC---CchHHHHHHHHHHHcCCCEEeCCCCCCC---hHHHHHHHHhHhhcCCCCCCc
Q psy15050 6 APTIQL-NNGQEIPALGLGTWQGEP---GSGDVKNAVLAAIDAGYRHIDTAEVYQT---EGDIGEAIKEKINSGDIKREE 78 (323)
Q Consensus 6 m~~~~L-~tg~~vs~lglGt~~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---E~~lG~al~~~~~~~~~~R~~ 78 (323)
|++++| +.|+++|++.+|+|+... ...++...++.|++.|||+||-|+.||. |+++|.+|+- .+.-|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l----~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKL----APGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhc----Chhhhhh
Confidence 678999 699999999999999742 2468889999999999999999999995 9999999985 2347999
Q ss_pred EEEEeccCC------------CCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHH
Q psy15050 79 LFITTKVWI------------THFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWR 146 (323)
Q Consensus 79 v~i~tK~~~------------~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
+.|+||++. .+.|.++|.++||+||++|+|||+|+++||+|++ -.+.+++.+
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp----------------Lmd~eeVAe 140 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP----------------LMDAEEVAE 140 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc----------------cCCHHHHHH
Confidence 999999963 2568999999999999999999999999999976 477899999
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCCCCCCC
Q psy15050 147 GMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPWTNPDK 223 (323)
Q Consensus 147 aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~~~~~~ 223 (323)
|+..|+++||||++|||||++.+++-+.+......++||+++|+++.+ +..+++|+++.|..+|||||++|..-.++
T Consensus 141 Af~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~ 220 (298)
T COG4989 141 AFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD 220 (298)
T ss_pred HHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC
Confidence 999999999999999999999999999988888999999999998873 67999999999999999999998500001
Q ss_pred CCCC--ChHHHHHHHHHcC-CCHHHHHHHHHhcCCeEE--ec--cCcC------ceecccCCHHHHHHHhcCC
Q psy15050 224 PLLI--NDDVLKEIADKYR-KSPAQVVLRYLVFLMVCR--LS--SGEH------KVFVEQGSPTEEHAIQSYS 283 (323)
Q Consensus 224 ~~~l--~~~~l~~ia~~~~-~s~aq~al~w~l~~~~v~--i~--~~~~------~~~~~~Lt~~e~~~l~~~~ 283 (323)
..+ -++++..||+++| .|..++|++|++.+|..+ |+ .+++ ++.++.||.++|-+|-.+.
T Consensus 221 -~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 221 -DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred -cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 111 1478999999999 799999999999998654 44 5666 7788999999999987554
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.8e-46 Score=338.11 Aligned_cols=243 Identities=17% Similarity=0.187 Sum_probs=196.7
Q ss_pred CCccCccccccCcCCC------------CchHHHHHHHHHHHcCCCEEeCCCCCC-ChHHHHHHHHhHhhcCCCCCCcEE
Q psy15050 14 GQEIPALGLGTWQGEP------------GSGDVKNAVLAAIDAGYRHIDTAEVYQ-TEGDIGEAIKEKINSGDIKREELF 80 (323)
Q Consensus 14 g~~vs~lglGt~~~~~------------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~~~~~R~~v~ 80 (323)
+++||+||||||+++. +++++.++|+.|++.||||||||+.|| ||+.+|++|+. ..+++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~------~~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR------PVPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc------CCceEee
Confidence 5789999999997652 357899999999999999999999999 69999999974 1346799
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEE
Q psy15050 81 ITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSI 160 (323)
Q Consensus 81 i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~i 160 (323)
|+||.. ..+++.+++++++||+|||+||||+|++|+|+... .....++|++|++|+++||||+|
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~i 139 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELF--------------GPHGAALWERLQALKDQGLFAKI 139 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc--------------CcchHHHHHHHHHHHHcCCcceE
Confidence 999852 35788999999999999999999999999985410 11225789999999999999999
Q ss_pred EecCCCHHHHHHHHHhCCCcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCCC-CCC--CCCCCC-----h
Q psy15050 161 GVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPWT-NPD--KPLLIN-----D 229 (323)
Q Consensus 161 GvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~~-~~~--~~~~l~-----~ 229 (323)
|||||+++++.++... .+|+++|++||+++++ .+++++|+++||++++|+||++|.. .+. .+..+. -
T Consensus 140 GvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~ 217 (292)
T PRK14863 140 GVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRL 217 (292)
T ss_pred eeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHH
Confidence 9999999988877643 4779999999999885 3699999999999999999999972 111 011111 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCeE--Eec--cCcC------ceecccCCHHHHHHHh
Q psy15050 230 DVLKEIADKYRKSPAQVVLRYLVFLMVC--RLS--SGEH------KVFVEQGSPTEEHAIQ 280 (323)
Q Consensus 230 ~~l~~ia~~~~~s~aq~al~w~l~~~~v--~i~--~~~~------~~~~~~Lt~~e~~~l~ 280 (323)
..+.+++++.++|++|+||+|+++++.+ +|+ ++++ .+.+.+++++.+++|.
T Consensus 218 ~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 218 SRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 4566778888999999999999999743 566 6776 4455678888887776
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.4e-43 Score=318.72 Aligned_cols=289 Identities=21% Similarity=0.255 Sum_probs=232.0
Q ss_pred CCeEEC-CCCCccCccccccCcCCC------CchHHHHHHHHHHHcCCCEEeCCCCC--C-ChHHHHHHHHhHhhcCCCC
Q psy15050 6 APTIQL-NNGQEIPALGLGTWQGEP------GSGDVKNAVLAAIDAGYRHIDTAEVY--Q-TEGDIGEAIKEKINSGDIK 75 (323)
Q Consensus 6 m~~~~L-~tg~~vs~lglGt~~~~~------~~~~~~~~l~~A~~~Gi~~~DTA~~Y--g-~E~~lG~al~~~~~~~~~~ 75 (323)
|.||++ +||.++|.||||+++.+. +++.+.++|+.|++.|||+||||..| | ||..+|+||++ ..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~------~~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD------GY 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh------cc
Confidence 789999 999999999999998753 46788999999999999999999999 6 69999999997 36
Q ss_pred CCcEEEEeccCCC-CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc
Q psy15050 76 REELFITTKVWIT-HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK 154 (323)
Q Consensus 76 R~~v~i~tK~~~~-~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~ 154 (323)
|++|+++||+... -.+.+.+++-++++|++||+||+|+|+||..... . +........++.++++|++
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e----~--------~~k~~~~g~~df~~kak~e 142 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE----T--------WEKIERLGVFDFLEKAKAE 142 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH----H--------HHHHHccChHHHHHHHHhc
Confidence 9999999999632 3578889999999999999999999999986431 0 1112223468999999999
Q ss_pred CCccEEEecCCCH-HHHHHHHHhCCCcceEeeecccCCcCh----HHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCC-
Q psy15050 155 GLAKSIGVSNFNS-GQIKRILDCAKIKPVNLQIEVHPYLNQ----RKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLIN- 228 (323)
Q Consensus 155 GkIr~iGvSn~~~-~~l~~l~~~~~~~~~~~q~~~~~~~~~----~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~- 228 (323)
||||++|+|.|+. +.+.+++....+ +.+|+.||.++.. .+.+++|.++|++|+.++|+.+|. ++.
T Consensus 143 GkIr~~GFSfHgs~e~~~~iv~a~~~--dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~-------l~~~ 213 (391)
T COG1453 143 GKIRNAGFSFHGSTEVFKEIVDAYPW--DFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGG-------LLYN 213 (391)
T ss_pred CcEEEeeecCCCCHHHHHHHHhcCCc--ceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCC-------cccC
Confidence 9999999999987 668888887765 6677777766652 389999999999999999999885 332
Q ss_pred -hHHHHHHHHHcC--CCHHHHHHHHHhcCCeEEec----cCcC----------ceecccCCHHHHHHHhcCCCCCCcc-c
Q psy15050 229 -DDVLKEIADKYR--KSPAQVVLRYLVFLMVCRLS----SGEH----------KVFVEQGSPTEEHAIQSYSHLPGEL-S 290 (323)
Q Consensus 229 -~~~l~~ia~~~~--~s~aq~al~w~l~~~~v~i~----~~~~----------~~~~~~Lt~~e~~~l~~~~~~~~~~-~ 290 (323)
.+++.+|.+++. .||+.+|+||+++++-|.++ ++++ .+.. +||++|++.|+++.+..... .
T Consensus 214 vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p-~lte~e~~il~~v~~~~~~~~~ 292 (391)
T COG1453 214 VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEP-SLTEEELQILEKVEEIYRESLK 292 (391)
T ss_pred CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCC-ccCHHHHHHHHHHHHHHHHHhc
Confidence 378999999985 68999999999999876555 4444 2222 59999999999998876644 3
Q ss_pred ccccccccCCcccce--echh--HHHHHHHhhhhhc
Q psy15050 291 NVCFTSQYDTTSGLS--VRGT--LVKLLQMFLRVTY 322 (323)
Q Consensus 291 ~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 322 (323)
..|.+|+|+-++.-- .-.- |+|+..+|--+.|
T Consensus 293 v~Ct~C~yC~PCP~gInIP~~f~lyN~~~~~~~~~~ 328 (391)
T COG1453 293 VPCTGCRYCLPCPSGINIPEIFRLYNLAVAFDDVDY 328 (391)
T ss_pred CCCccccccCcCCCCCChHHHHHHHHHHHhhccchh
Confidence 459999998665433 3333 3788877765443
No 17
>KOG1576|consensus
Probab=100.00 E-value=6.4e-39 Score=276.31 Aligned_cols=263 Identities=22% Similarity=0.263 Sum_probs=203.9
Q ss_pred CCCeEEC-CCCCccCccccccCcCC-----CCchHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCC
Q psy15050 5 IAPTIQL-NNGQEIPALGLGTWQGE-----PGSGDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIK 75 (323)
Q Consensus 5 ~m~~~~L-~tg~~vs~lglGt~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~ 75 (323)
+|+||.| +||++||+||||+...+ .++++....|..|+..|||+||||+.|| +|+.+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 6899999 99999999999985532 2356667777779999999999999999 69999999987 79
Q ss_pred CCcEEEEeccCCC--------CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHH
Q psy15050 76 REELFITTKVWIT--------HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRG 147 (323)
Q Consensus 76 R~~v~i~tK~~~~--------~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 147 (323)
|+.++|+||++.. +++++.++++|++||+||++||+|++++|..+... ..+..+.|++.+
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap------------~ld~vl~Etlp~ 162 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAP------------NLDIVLNETLPA 162 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccc------------cccHHHHHHHHH
Confidence 9999999999753 57889999999999999999999999999876531 224567899999
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh---HHHHHHHHhcCcEEEEecCCCCCC-CCCCC
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNITVTAYSPLGAPW-TNPDK 223 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~via~spl~~G~-~~~~~ 223 (323)
|+++|++||||+|||+.++.+.+.++++...-..+++-.-++....+ -..+++.+.+|++|+..++++.|+ .+.++
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp 242 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGP 242 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCC
Confidence 99999999999999999999999999877655555554333332333 356778889999999999999998 33333
Q ss_pred CCCCC--------hHHHHHHHHHcCCCHHHHHHHHHhcCCe-EEec---cCcC------ceecccCCH-HHHHHHhcCCC
Q psy15050 224 PLLIN--------DDVLKEIADKYRKSPAQVVLRYLVFLMV-CRLS---SGEH------KVFVEQGSP-TEEHAIQSYSH 284 (323)
Q Consensus 224 ~~~l~--------~~~l~~ia~~~~~s~aq~al~w~l~~~~-v~i~---~~~~------~~~~~~Lt~-~e~~~l~~~~~ 284 (323)
+++.. ..+-.++|++.|++.+.+|+.|.++.+. .++. ++.+ ++..-.||. ++...+.-+.+
T Consensus 243 ~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~ 322 (342)
T KOG1576|consen 243 PPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILRE 322 (342)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence 33322 2455667788899999999999999853 3333 5555 333346777 44444444433
Q ss_pred C
Q psy15050 285 L 285 (323)
Q Consensus 285 ~ 285 (323)
+
T Consensus 323 ~ 323 (342)
T KOG1576|consen 323 I 323 (342)
T ss_pred H
Confidence 3
No 18
>KOG3023|consensus
Probab=98.60 E-value=1.1e-07 Score=81.82 Aligned_cols=74 Identities=26% Similarity=0.502 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC-hHHHHHHHHhcCcEEEEec
Q psy15050 139 VSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN-QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 139 ~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~-~~~l~~~~~~~gI~via~s 212 (323)
..+.+.|+.||+++.+|+|..||||.|++.+|++++..+.+.|..+|+++.-... +.++.++|.+++|.+..++
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 4467899999999999999999999999999999999999999999999887665 7899999999999998875
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=92.71 E-value=0.86 Score=38.93 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q psy15050 99 CQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK 178 (323)
Q Consensus 99 ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~ 178 (323)
+++.|....-+.+|.+.+..- -..+....+-|+++.+-|+-.-|++.||..+....-+-..+
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~G 125 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRG 125 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH------------------HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcC
Confidence 555666666677777776532 12234455668888999999999999999988766555444
Q ss_pred CcceEeeecccCCcCh-------HHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 179 IKPVNLQIEVHPYLNQ-------RKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 179 ~~~~~~q~~~~~~~~~-------~~l~~~~~~~gI~via~spl~~G~ 218 (323)
-.|+.-..+|+-++.+ .+..++|++.||.|.-..++.++.
T Consensus 126 rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 126 RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 4677778888777763 688999999999999999988764
No 20
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=87.56 E-value=17 Score=34.59 Aligned_cols=142 Identities=17% Similarity=0.188 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHcCCC-EEeCCCCCCChHHHHHHHHhHhhcCCCCCC-----cEEEEeccCCCCCChHHHHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYR-HIDTAEVYQTEGDIGEAIKEKINSGDIKRE-----ELFITTKVWITHFEPDMVVQACQNSCKK 105 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~-----~v~i~tK~~~~~~~~~~i~~~ve~SL~r 105 (323)
++-.+-++.|++.|-. ..|-+ ..|+-..+-+.+-+. -+++-. +.++-..-...+.+++.+.+.+++-.+
T Consensus 77 ~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~- 151 (423)
T TIGR00190 77 EEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDA---VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK- 151 (423)
T ss_pred HHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH-
Confidence 3444568999999976 45554 346544444443321 111111 111101001235678888888888776
Q ss_pred hCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEee
Q psy15050 106 LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQ 185 (323)
Q Consensus 106 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q 185 (323)
|-+|++-||.- -..+.++.+++.|++ .|+-+-.-.-+...+...+-
T Consensus 152 ---dGVDfmTiH~G-----------------------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~~------ 197 (423)
T TIGR00190 152 ---DGVDFMTIHAG-----------------------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHHK------ 197 (423)
T ss_pred ---hCCCEEEEccc-----------------------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcCC------
Confidence 55788999963 245788899998855 78777776665554443321
Q ss_pred ecccCCcCh-HHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 186 IEVHPYLNQ-RKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 186 ~~~~~~~~~-~~l~~~~~~~gI~via~spl~~G~ 218 (323)
=||++.+ +++++.|+++++.+- ||.|+
T Consensus 198 --ENPlye~fD~lLeI~~~yDVtlS----LGDgl 225 (423)
T TIGR00190 198 --ENPLYKNFDYILEIAKEYDVTLS----LGDGL 225 (423)
T ss_pred --cCchHHHHHHHHHHHHHhCeeee----ccCCc
Confidence 3555543 789999999999984 66665
No 21
>PRK08609 hypothetical protein; Provisional
Probab=87.22 E-value=33 Score=34.61 Aligned_cols=185 Identities=19% Similarity=0.208 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC--------ChHHHHHH---HHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ--------TEGDIGEA---IKEKINSGDIKREELFITTKVWITHFEPDMVVQACQ 100 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg--------~E~~lG~a---l~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve 100 (323)
....++++.|.+.|++.|=.++++. +...+-.. ++.. ... ...=++++..-+.. .++....-.+
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~-~~~i~Il~GiEv~i---~~~g~~d~~~ 423 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEK-YPEIDILSGIEMDI---LPDGSLDYDD 423 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHh-cCCCeEEEEEEEee---cCCcchhhcH
Confidence 3467799999999999999888862 12222222 1111 110 01113444433322 1121222233
Q ss_pred HHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecC------CC--HHHHHH
Q psy15050 101 NSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSN------FN--SGQIKR 172 (323)
Q Consensus 101 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn------~~--~~~l~~ 172 (323)
..|+. .||+ +.-+|++.. .+..+.++.+.++.+.|.+.-||=-. +. ...+++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~-----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~ 483 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS-----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQ 483 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHH
Confidence 35554 5666 677787532 23466788899999899988777544 11 133444
Q ss_pred HHHhCCCcceEeeecccCCcC--hHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHH
Q psy15050 173 ILDCAKIKPVNLQIEVHPYLN--QRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVV 247 (323)
Q Consensus 173 l~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~a 247 (323)
+++.+.-.=..+|+|-+++.. ...++..|.+.|+.++ .++=+... ..+-.-+.-..+|++.+.++.++.
T Consensus 484 i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~-igSDAH~~-----~~l~~~~~~v~~ar~~~~~~~~v~ 554 (570)
T PRK08609 484 LIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLA-INTDAHHT-----EMLDDMKYGVATARKGWIQKDRVI 554 (570)
T ss_pred HHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEE-EECCCCCh-----hhhCcHHHHHHHHHHcCCCHHHcc
Confidence 444321111466777665432 4789999999999753 33333321 122234566778888888777653
No 22
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=81.80 E-value=50 Score=31.67 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHcCCC-EEeCCCCCCChHHHHHHHHhHhhcCCCCCCc-----EEEEe--c-cCCCCCChHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYR-HIDTAEVYQTEGDIGEAIKEKINSGDIKREE-----LFITT--K-VWITHFEPDMVVQACQNS 102 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~-----v~i~t--K-~~~~~~~~~~i~~~ve~S 102 (323)
++-.+-++.|++.|-. ..|-+ ..|+-..+-+.+-+. -+++-.- .++-. | -...+.+++.+...+++-
T Consensus 77 ~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~q 152 (431)
T PRK13352 77 EEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIEA---SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQ 152 (431)
T ss_pred HHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---CCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHH
Confidence 4444568999999976 44554 345533333333221 1111110 01000 1 022356788888888887
Q ss_pred HHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcce
Q psy15050 103 CKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPV 182 (323)
Q Consensus 103 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~ 182 (323)
.+ |-+|++-||.- -..+.++.+++.|++ .|+-+-.-.-+...+...+
T Consensus 153 a~----~GVDfmTiHcG-----------------------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~---- 199 (431)
T PRK13352 153 AK----DGVDFMTIHCG-----------------------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN---- 199 (431)
T ss_pred HH----hCCCEEEEccc-----------------------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC----
Confidence 76 56788999963 235678889988855 7877777666555443332
Q ss_pred EeeecccCCcCh-HHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 183 NLQIEVHPYLNQ-RKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 183 ~~q~~~~~~~~~-~~l~~~~~~~gI~via~spl~~G~ 218 (323)
.=||++.+ +++++.|+++++.+ +||.|+
T Consensus 200 ----~ENPlye~fD~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 200 ----KENPLYEHFDYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred ----CcCchHHHHHHHHHHHHHhCeee----eccCCc
Confidence 13555543 78999999999998 466665
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.51 E-value=11 Score=35.96 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHh--CCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKL--GLD 109 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rL--g~d 109 (323)
.....++++|++.|++++|||...-....+.... .+..+.+..-+| ++|.-..--.....+.+ .++
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a---------~~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~i~ 146 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA---------KKAGITAVLGCG---FDPGITNVLAAYAAKELFDEIE 146 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH---------HHcCeEEEcccC---cCcchHHHHHHHHHHHhhcccc
Confidence 4456899999999999999997654432222222 233455555553 34432222233333333 489
Q ss_pred ceeEEEeecccc
Q psy15050 110 YVDLYLIHWPFA 121 (323)
Q Consensus 110 ~iDl~~lH~p~~ 121 (323)
+||+|..+-|..
T Consensus 147 si~iy~g~~g~~ 158 (389)
T COG1748 147 SIDIYVGGLGEH 158 (389)
T ss_pred EEEEEEecCCCC
Confidence 999999998865
No 24
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=79.47 E-value=54 Score=30.61 Aligned_cols=147 Identities=11% Similarity=0.192 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCCC--------hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQT--------EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNS 102 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~S 102 (323)
.++..+.++.+.+.|++.|-.--..+. ...+=+++++. --+++.|..... ..++.+...+ -
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN-~~~~~~~a~~----~ 208 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDAN-GRWDLAEAIR----L 208 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECC-CCCCHHHHHH----H
Confidence 366777888888999999875332221 12222444442 124566666653 3345443332 2
Q ss_pred HHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcc
Q psy15050 103 CKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKP 181 (323)
Q Consensus 103 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~ 181 (323)
+++|. ..++.+++.|.+. +-++.+.++++.-.+. ..|=|.++...+.++++....
T Consensus 209 ~~~l~--~~~i~~iEqP~~~--------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~-- 264 (357)
T cd03316 209 ARALE--EYDLFWFEEPVPP--------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV-- 264 (357)
T ss_pred HHHhC--ccCCCeEcCCCCc--------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC--
Confidence 23332 2345566666431 1356677777765555 455566788899999886654
Q ss_pred eEeeecccCCc---ChHHHHHHHHhcCcEEEEec
Q psy15050 182 VNLQIEVHPYL---NQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 182 ~~~q~~~~~~~---~~~~l~~~~~~~gI~via~s 212 (323)
+++|+.....- .-.++...|+++|+.++..+
T Consensus 265 d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 265 DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 56666554432 23689999999999988765
No 25
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=79.08 E-value=34 Score=28.09 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC-------hHHHHHHHHhcCcEEEEec
Q psy15050 140 SIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN-------QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 140 ~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~-------~~~l~~~~~~~gI~via~s 212 (323)
.-+++++.--+=-++.-|++|=|.+-+-....++++...-+..++-+.+|.-+. +.++.+..+++|..|..-|
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~s 90 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQS 90 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeeh
Confidence 446677655555566788999998888887777777665443444444554333 4789999999999998877
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHc-CCCHHHH---HHHHHhcCCeEE
Q psy15050 213 PLGAPWTNPDKPLLINDDVLKEIADKY-RKSPAQV---VLRYLVFLMVCR 258 (323)
Q Consensus 213 pl~~G~~~~~~~~~l~~~~l~~ia~~~-~~s~aq~---al~w~l~~~~v~ 258 (323)
-.-+|. =+.|.+++ |++|.++ .|| ..++|+-+
T Consensus 91 HalSg~-------------eRsis~kfGG~~p~eiiAetLR-~fg~G~KV 126 (186)
T COG1751 91 HALSGV-------------ERSISRKFGGYSPLEIIAETLR-MFGQGVKV 126 (186)
T ss_pred hhhhcc-------------hhhhhhhcCCcchHHHHHHHHH-HhcCCcEE
Confidence 665553 14566666 6777765 466 66777643
No 26
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=78.65 E-value=15 Score=35.46 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHHhCCCceeEEEe-ecccccCCCCCCCCCccCC-CCCc-cHHHHHH-HHHHHHHcCCccEEEec
Q psy15050 88 THFEPDMVVQACQNSCKKLGLDYVDLYLI-HWPFAIKGKDVHDTSFEGE-HNNV-SIEETWR-GMEKCVEKGLAKSIGVS 163 (323)
Q Consensus 88 ~~~~~~~i~~~ve~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-aL~~l~~~GkIr~iGvS 163 (323)
...+.+.+.+.++..++ |+.|+|.+|.+ |-|......... .+. .++. ...+.++ ..+.|.+.|. +.+|+|
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~----~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeis 272 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKI----KGKALPDEDEKADMYELVEELLEKAGY-RQYEIS 272 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcc----cCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeec
Confidence 35678888888888887 88999999987 444322100000 000 0111 1223444 4455666777 999999
Q ss_pred CCCH
Q psy15050 164 NFNS 167 (323)
Q Consensus 164 n~~~ 167 (323)
||..
T Consensus 273 nfa~ 276 (416)
T COG0635 273 NFAK 276 (416)
T ss_pred hhcC
Confidence 9986
No 27
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=77.49 E-value=33 Score=33.11 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC-----ceeEEEeecccccCCCCCC
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD-----YVDLYLIHWPFAIKGKDVH 128 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d-----~iDl~~lH~p~~~~~~~~~ 128 (323)
.||.|+.|-++|++..+.. +.+-++|.|-... +-+-..++...++++.+ .+.++.+|.|... |
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~-----~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~-g---- 129 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLT-----ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK-G---- 129 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCcch-----hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC-C----
Confidence 4677888888888765432 2345677766532 22333345555555432 3567777777542 0
Q ss_pred CCCccCCCCCccHHHHHHHHHHH-------HHcCCccEEEecCC---CHHHHHHHHHhCCCcceE
Q psy15050 129 DTSFEGEHNNVSIEETWRGMEKC-------VEKGLAKSIGVSNF---NSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~aL~~l-------~~~GkIr~iGvSn~---~~~~l~~l~~~~~~~~~~ 183 (323)
........++++|-+. ++.++|--||-++. +.+++.++++..++++..
T Consensus 130 -------~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 130 -------SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred -------cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 0112334455555432 23466888876654 357899999988875544
No 28
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.58 E-value=36 Score=30.63 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQI 170 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l 170 (323)
+.+.+.+..++.. .-|-|+||+-.--.+ ....+.....++.+++.-.+ -|-+-+++++.+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~~~------------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~ 82 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGTAV------------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAI 82 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCc------------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHH
Confidence 4444555544443 579999998742111 11233344455555443222 388999999999
Q ss_pred HHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 171 KRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 171 ~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G 217 (323)
+.+++.+.-.+.+|-++... ....++++.++++|..++...--..|
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~~~g 128 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMDDTG 128 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecCCCC
Confidence 99999854445665544321 22458899999999999986543344
No 29
>PRK08392 hypothetical protein; Provisional
Probab=75.17 E-value=54 Score=28.33 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC--ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ--TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD 109 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d 109 (323)
....+.++.|.+.|++.|=.+++.. ....+...+++........+=++.+..-+.... +. ....+..++ ..|
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~---~~-~~~~~~~~~--~~D 87 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP---NG-VDITDDFAK--KLD 87 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC---Cc-chhHHHHHh--hCC
Confidence 3467899999999999997777753 111122222111000000111233333332111 11 223334444 356
Q ss_pred ceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC-------C-HHHHHHHHHhCCCcc
Q psy15050 110 YVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF-------N-SGQIKRILDCAKIKP 181 (323)
Q Consensus 110 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~-------~-~~~l~~l~~~~~~~~ 181 (323)
|+ +.-+|.... ......-.+.+.++.+.|.+.-+|=-.. . ...++++++.+.-.=
T Consensus 88 ~v-I~SvH~~~~----------------~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g 150 (215)
T PRK08392 88 YV-IASVHEWFG----------------RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG 150 (215)
T ss_pred EE-EEEeecCcC----------------CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC
Confidence 65 667784321 1124566778888888898877774221 1 123333333221111
Q ss_pred eEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHH
Q psy15050 182 VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQV 246 (323)
Q Consensus 182 ~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~ 246 (323)
....+|-....+..++++.|++.|+.++. +.=+.. |. .+-.-+...+++++.|.++.++
T Consensus 151 ~~lEiNt~~~~p~~~~l~~~~~~G~~~~i-gSDAH~---~~--~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 151 KAFEISSRYRVPDLEFIRECIKRGIKLTF-ASDAHR---PE--DVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCEEEE-eCCCCC---hH--HCCcHHHHHHHHHHcCCCHHHe
Confidence 23333322223456899999999987643 222221 11 1111255677888888887664
No 30
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=74.85 E-value=69 Score=29.40 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCC--ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQ--TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGL 108 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~ 108 (323)
.++..+.++.+.+.|++.|+.--.-. .+...=+++++. .. ++-|.-+.. ..++.+.. ..+-+.|+.++
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n-~~~~~~~A-~~~~~~l~~~~- 204 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDAN-QGWTPEEA-VELLRELAELG- 204 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCC-CCcCHHHH-HHHHHHHHhcC-
Confidence 36667788888999999998742111 122222344442 22 566777763 33454432 22334445544
Q ss_pred CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeec
Q psy15050 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIE 187 (323)
Q Consensus 109 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~ 187 (323)
+.++-.|.+ .+-|+.+.+|++...|. ..|=+-++...+.++++.... +++|..
T Consensus 205 ----l~~iEeP~~--------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~~~ 258 (316)
T cd03319 205 ----VELIEQPVP--------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY--DGINIK 258 (316)
T ss_pred ----CCEEECCCC--------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--CEEEEe
Confidence 444454432 12255677787776666 445566778888888887665 566666
Q ss_pred ccCCcC---hHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 188 VHPYLN---QRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 188 ~~~~~~---~~~l~~~~~~~gI~via~spl~~G 217 (323)
....-. -.++..+|+++||.++..+-+..+
T Consensus 259 ~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 259 LMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 554321 368999999999999987655443
No 31
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=74.74 E-value=75 Score=29.75 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=26.4
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA 52 (323)
+|+.|.+... |+++. ++..++++...++||..|+.+
T Consensus 10 TLRDG~q~~~-----~~f~~--~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 10 TLRDGMHAVR-----HQYTL--EQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCcCcCCC-----CccCH--HHHHHHHHHHHHcCCCEEEee
Confidence 4566665432 33444 788899999999999999994
No 32
>PRK13796 GTPase YqeH; Provisional
Probab=73.71 E-value=62 Score=30.60 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcC---CCEEeCCCCCCC-hHHHHHHHHhHhhcCCCCCCcEEEEeccCC--CCCChHHHHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAG---YRHIDTAEVYQT-EGDIGEAIKEKINSGDIKREELFITTKVWI--THFEPDMVVQACQNSCKK 105 (323)
Q Consensus 32 ~~~~~~l~~A~~~G---i~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK~~~--~~~~~~~i~~~ve~SL~r 105 (323)
++..++++..-+.- +-.+|..+.-++ ...+.+... .+.-++|.+|.-. .....+.+.+.++...+.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~--------~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--------NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC--------CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh
Confidence 45556666665544 556787665444 222222211 3456889999732 122344566666666777
Q ss_pred hCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q psy15050 106 LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRI 173 (323)
Q Consensus 106 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l 173 (323)
+|....|++++..-. ...+.+.++.+.+..+.+.+-.+|.+|..-..+-..
T Consensus 129 ~g~~~~~v~~vSAk~-----------------g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 129 LGLRPVDVVLISAQK-----------------GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred cCCCcCcEEEEECCC-----------------CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 786555777765432 245678888888887788999999999998765443
No 33
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=73.60 E-value=38 Score=31.50 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=67.9
Q ss_pred HHHHHhCCCceeEEEeec-ccccCCCCCCCCCccCCCCCccHH---HHHHHHHHHHHcCCccEEEecCC---CHHHHHHH
Q psy15050 101 NSCKKLGLDYVDLYLIHW-PFAIKGKDVHDTSFEGEHNNVSIE---ETWRGMEKCVEKGLAKSIGVSNF---NSGQIKRI 173 (323)
Q Consensus 101 ~SL~rLg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~---~~~~aL~~l~~~GkIr~iGvSn~---~~~~l~~l 173 (323)
+.-+.+|.|+||+-+.-. |+. .+...+ .+.+...+..+--.+ |..|.. +++.++++
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~---------------~d~~~~e~~~~Vk~V~eavd~PL~--Id~s~n~~kD~evleaa 145 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNG---------------KDKSPEEAAKTVEEVLQAVDVPLI--IGGSGNPEKDAEVLEKV 145 (319)
T ss_pred HHHHHhCCCEEEEECCCCCccc---------------ccchHHHHHHHHHHHHHhCCCCEE--EecCCCCCCCHHHHHHH
Confidence 344578999999775432 211 011223 333333333333332 666643 67889999
Q ss_pred HHhCCC-cceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHH
Q psy15050 174 LDCAKI-KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQV 246 (323)
Q Consensus 174 ~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~ 246 (323)
++.+.- ++.++-.+.. +-+.+.+.|+++|..|++.+|.. +-....+...+.++|+++.++
T Consensus 146 le~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~D----------ln~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 146 AEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLD----------INLAKQLNILLTELGVPRERI 206 (319)
T ss_pred HHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHH----------HHHHHHHHHHHHHcCCCHHHE
Confidence 988764 4666554422 23679999999999999987553 111245555566777766553
No 34
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=72.80 E-value=90 Score=29.78 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=67.7
Q ss_pred HHHHHHHHHHH-----------HHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEE
Q psy15050 93 DMVVQACQNSC-----------KKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSI 160 (323)
Q Consensus 93 ~~i~~~ve~SL-----------~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~i 160 (323)
+.+++.++... +.+| .|++.||.-.... . ..+.+.++..+..++..+. +.=--|
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP---------~--~~d~~~~e~a~~vk~V~~av~vPLIL 193 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDP---------K--LDDKSPSEAAKVLEDVLQAVDVPIVI 193 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCc---------c--ccccCHHHHHHHHHHHHHhCCCCEEE
Confidence 45666666655 4555 6888888653311 0 1123445566666665333 222234
Q ss_pred Eec---CCCHHHHHHHHHhCCC-cceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 161 GVS---NFNSGQIKRILDCAKI-KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 161 GvS---n~~~~~l~~l~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G 217 (323)
+=| ..+++.++++++.+.- +|.++-.+... .-.++.+.|+++|..+++++|..-+
T Consensus 194 ~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 194 GGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred eCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 433 5577889999988865 67765544321 2357999999999999999988654
No 35
>PRK05414 urocanate hydratase; Provisional
Probab=72.55 E-value=12 Score=36.69 Aligned_cols=129 Identities=18% Similarity=0.123 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCEEe--CCCCC---C-------ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC-CChHHHH------
Q psy15050 36 NAVLAAIDAGYRHID--TAEVY---Q-------TEGDIGEAIKEKINSGDIKREELFITTKVWITH-FEPDMVV------ 96 (323)
Q Consensus 36 ~~l~~A~~~Gi~~~D--TA~~Y---g-------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~~~i~------ 96 (323)
+-.+..-+.|+..+- ||-+| | .-+.+..+-++.+. + --+.++||++-++.-. -.|....
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceE
Confidence 456666777877553 55554 2 24455555555543 2 2577899999886421 1111110
Q ss_pred ----HHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q psy15050 97 ----QACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKR 172 (323)
Q Consensus 97 ----~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~ 172 (323)
-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-++.+++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~-----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 250 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA-----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPE 250 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHH
Confidence 1123445789999999762 4678999999999999999999999998899999
Q ss_pred HHHhCC-CcceEeeeccc
Q psy15050 173 ILDCAK-IKPVNLQIEVH 189 (323)
Q Consensus 173 l~~~~~-~~~~~~q~~~~ 189 (323)
+++..- +++..-|.+.|
T Consensus 251 l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 251 LVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHcCCCCCccCcCcccc
Confidence 888642 25566676654
No 36
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=72.45 E-value=12 Score=36.58 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCCEEe--CCCCC---C-------ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC-CChHHHH------
Q psy15050 36 NAVLAAIDAGYRHID--TAEVY---Q-------TEGDIGEAIKEKINSGDIKREELFITTKVWITH-FEPDMVV------ 96 (323)
Q Consensus 36 ~~l~~A~~~Gi~~~D--TA~~Y---g-------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~~~i~------ 96 (323)
+-.+..-+.|+..+- ||-+| | .-+.+..+-++.+.. --+.++||++-++.-. -.|....
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG--SLKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC--CCceeEEEEeCCCccccccHHHHHHcCceE
Confidence 456667778887553 55544 2 244555565655532 2578899998886421 1111110
Q ss_pred ----HHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q psy15050 97 ----QACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKR 172 (323)
Q Consensus 97 ----~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~ 172 (323)
-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.+++
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~-----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT-----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 1123445788999999762 4678999999999999999999999998999999
Q ss_pred HHHhC-CCcceEeeecccC
Q psy15050 173 ILDCA-KIKPVNLQIEVHP 190 (323)
Q Consensus 173 l~~~~-~~~~~~~q~~~~~ 190 (323)
+++.. .+++..-|.+.|-
T Consensus 242 l~~r~i~pDlvtDQTSaHd 260 (545)
T TIGR01228 242 LLKRGVVPDVVTDQTSAHD 260 (545)
T ss_pred HHHcCCCCCCcCCCCcccC
Confidence 98864 2355666766543
No 37
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=71.84 E-value=84 Score=29.26 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCCC---------------------hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQT---------------------EGDIGEAIKEKINSGDIKREELFITTKVWITH 89 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~ 89 (323)
.+...++.+.|-+.|+-+|-|--.+.+ ..+|-...+ .-+.+.++|=.
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--------~~kPiIlSTGm---- 156 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--------KGKPIILSTGM---- 156 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--------cCCCEEEEccc----
Confidence 366778899999999998876544432 223322222 22467777765
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHH-HHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEE-TWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+-+.+.++++...+ =|. .|+.+||....+. .+.++ -+.+|..|++.= -.-||+|.|+..
T Consensus 157 a~~~ei~~av~~~r~-~g~--~~i~LLhC~s~YP---------------ap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g 217 (347)
T COG2089 157 ATIEEIEEAVAILRE-NGN--PDIALLHCTSAYP---------------APFEDVNLKAIPKLAEAF-NAIVGLSDHTLG 217 (347)
T ss_pred ccHHHHHHHHHHHHh-cCC--CCeEEEEecCCCC---------------CCHHHhhHHHHHHHHHHh-CCccccccCccc
Confidence 255667777765544 343 3999999876642 23332 245555555543 445999999987
Q ss_pred HHHHHHH
Q psy15050 169 QIKRILD 175 (323)
Q Consensus 169 ~l~~l~~ 175 (323)
.+.-+..
T Consensus 218 ~~a~l~A 224 (347)
T COG2089 218 ILAPLAA 224 (347)
T ss_pred hhHHHHH
Confidence 5544433
No 38
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=70.69 E-value=50 Score=29.36 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCCC---------------------hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQT---------------------EGDIGEAIKEKINSGDIKREELFITTKVWITH 89 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~ 89 (323)
.++..++.+.+-+.||.||=|.-...+ -.+| +.+.+ ....++|+|=.
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL-~~~A~-------tgkPvIlSTG~---- 122 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLL-EYIAK-------TGKPVILSTGM---- 122 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHH-HHHHT-------T-S-EEEE-TT----
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHH-HHHHH-------hCCcEEEECCC----
Confidence 378889999999999999987653211 1111 11111 33557777754
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~ 169 (323)
.+.+.|.++++...++- .-++.++|....+. ...-+--++.|..|++.=- --||.|.|+...
T Consensus 123 stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP--------------~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 STLEEIERAVEVLREAG---NEDLVLLHCVSSYP--------------TPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp --HHHHHHHHHHHHHHC---T--EEEEEE-SSSS----------------GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCC--------------CChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 35667777777663433 35899999987642 1122233556666665422 568999999753
No 39
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=69.96 E-value=2.9 Score=39.21 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=36.4
Q ss_pred HcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC--hHHHHHHHHhcCcE
Q psy15050 153 EKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN--QRKLIDFCKKHNIT 207 (323)
Q Consensus 153 ~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gI~ 207 (323)
=-|+||++||--|+++.+.++.+...- -.+.+.....+.. +..+++.|++.||.
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 359999999999999999988765442 1232222223222 46788888888875
No 40
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.69 E-value=71 Score=28.55 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHH-HHHHHcCCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGM-EKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL-~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+.+.+.+..++.++ -|.|+||+-. .|.. .+-.+.+..+ ..+.+.-. .-|-|-+++++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-----------------~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~ 81 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-----------------LDGVSAMKWLLNLLATEPT-VPLMLDSTNWE 81 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-----------------CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHH
Confidence 456667777766665 5999999864 1211 1122223222 22222212 23888899999
Q ss_pred HHHHHHHhCCCcceEeeecccCC-cChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPY-LNQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~-~~~~~l~~~~~~~gI~via~spl~~G 217 (323)
.++.+++.+.-...+|-+....+ .....+++.++++|..++.+..-..|
T Consensus 82 v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 82 VIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 99999987433345554443221 12467889999999999888654444
No 41
>PRK07945 hypothetical protein; Provisional
Probab=68.50 E-value=1e+02 Score=28.76 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC--------ChHHHHHHHHhHhhcCCCCCC-cEEEEeccCCC-CCChHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ--------TEGDIGEAIKEKINSGDIKRE-ELFITTKVWIT-HFEPDMVVQACQN 101 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg--------~E~~lG~al~~~~~~~~~~R~-~v~i~tK~~~~-~~~~~~i~~~ve~ 101 (323)
....+.++.|++.|+..+=.+++.. +...+-+.+.....-....++ +|.+.--+... ..+.+ ..++
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~~g~~~----~~~~ 186 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILDDGSLD----QEPE 186 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccCCCCcc----hhHH
Confidence 5578999999999999887777642 111111111110000000122 22222222211 11122 2233
Q ss_pred HHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecC---------------CC
Q psy15050 102 SCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSN---------------FN 166 (323)
Q Consensus 102 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn---------------~~ 166 (323)
.|+. .||+ +.-+|+... .+..+..+.|.++.+.+++.-+|=-+ +.
T Consensus 187 ~l~~--~D~v-IgSvH~~~~-----------------~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~ 246 (335)
T PRK07945 187 LLDR--LDVV-VASVHSKLR-----------------MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFD 246 (335)
T ss_pred HHHh--CCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcC
Confidence 3443 5666 667787522 12345568888888888888888432 12
Q ss_pred HHHHHHHHHhCCCcceEeeecccCC--cChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHH
Q psy15050 167 SGQIKRILDCAKIKPVNLQIEVHPY--LNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPA 244 (323)
Q Consensus 167 ~~~l~~l~~~~~~~~~~~q~~~~~~--~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~a 244 (323)
...+-+++...+. .+.+|-+.+ .+...++..|++.|+.++- +.=+.. |+ .+-.......++++.|+++.
T Consensus 247 ~~~i~~a~~e~g~---~lEINt~~~r~~P~~~il~~a~e~G~~vti-gSDAH~---p~--~v~~~~~~~~~a~~~g~~~~ 317 (335)
T PRK07945 247 AEAVFAACREHGT---AVEINSRPERRDPPTRLLRLALDAGCLFSI-DTDAHA---PG--QLDWLGYGCERAEEAGVPAD 317 (335)
T ss_pred HHHHHHHHHHhCC---EEEEeCCCCCCCChHHHHHHHHHcCCeEEe-cCCCCC---hh--hcchHHHHHHHHHHcCCCHH
Confidence 2333333333443 333333332 2346899999999987632 222221 11 11112335667777787776
Q ss_pred HHHHHH
Q psy15050 245 QVVLRY 250 (323)
Q Consensus 245 q~al~w 250 (323)
++.=.|
T Consensus 318 ~i~n~~ 323 (335)
T PRK07945 318 RIVNTW 323 (335)
T ss_pred HcccCC
Confidence 654444
No 42
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.82 E-value=40 Score=29.83 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKG-LAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~G-kIr~iGvSn~~~~ 168 (323)
++.+...+ +-+.|.++|+++|.+-..-.+... ....+.++.++.+++.+ .++...++.....
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~----------------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAV----------------PQMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCcccc----------------ccCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 34444444 445577899999998875433110 11245677888888888 6777677776666
Q ss_pred HHHHHHHhCCCcceEeeecccCC----------------cChHHHHHHHHhcCcEEEEec
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPY----------------LNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~----------------~~~~~l~~~~~~~gI~via~s 212 (323)
.++.+.+.. + ..+++.+... ..-.+.++++++.|+.+...-
T Consensus 79 ~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 777776653 3 3344433332 112467889999999886654
No 43
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=65.79 E-value=16 Score=35.86 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCEEe--CCCCC---CC-------hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCC-hHHH------
Q psy15050 35 KNAVLAAIDAGYRHID--TAEVY---QT-------EGDIGEAIKEKINSGDIKREELFITTKVWITHFE-PDMV------ 95 (323)
Q Consensus 35 ~~~l~~A~~~Gi~~~D--TA~~Y---g~-------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~-~~~i------ 95 (323)
-+-.+...+.|++.+- ||-+| |+ -+.+..+-++.+. .--+.++||++-++.-.-. |...
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g--~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG--GDLAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST--TS-TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC--CCCcceEEEEecccccccchHHHHHhcCce
Confidence 3566777788887664 55554 33 3344555555543 2367889999998643110 0000
Q ss_pred ----HHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q psy15050 96 ----VQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIK 171 (323)
Q Consensus 96 ----~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~ 171 (323)
+-.-++.-+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~-----------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~ 239 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT-----------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWE 239 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE-----------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc-----------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHH
Confidence 01123455788889999763 457899999999999999999999999889999
Q ss_pred HHHHhCC-CcceEeeecccC
Q psy15050 172 RILDCAK-IKPVNLQIEVHP 190 (323)
Q Consensus 172 ~l~~~~~-~~~~~~q~~~~~ 190 (323)
++++..- +++..-|.+.|-
T Consensus 240 ~l~~~~i~pDl~tDQTS~Hd 259 (546)
T PF01175_consen 240 ELVERGIIPDLVTDQTSAHD 259 (546)
T ss_dssp HHHHTT---SEE---SSTT-
T ss_pred HHHHcCCCCCcccCCCcccc
Confidence 9888643 266667776644
No 44
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=65.67 E-value=1.2e+02 Score=29.40 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC-----ceeEEEeecccccCCCC
Q psy15050 52 AEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD-----YVDLYLIHWPFAIKGKD 126 (323)
Q Consensus 52 A~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d-----~iDl~~lH~p~~~~~~~ 126 (323)
.-.||.++.|-++|++..+.. +.+=++|.|-.. ++-+-..++...++++-. .+.++.++.|... |
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC~-----~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~-g-- 133 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTCM-----AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFV-G-- 133 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc--CCCEEEEeCCch-----HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCc-c--
Confidence 345788888888988765432 334467776652 222333344444333221 3688888887432 1
Q ss_pred CCCCCccCCCCCccHHHHHHHHHH-HH-------HcCCccEEE-ecCC-C-HHHHHHHHHhCCCcce
Q psy15050 127 VHDTSFEGEHNNVSIEETWRGMEK-CV-------EKGLAKSIG-VSNF-N-SGQIKRILDCAKIKPV 182 (323)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~aL~~-l~-------~~GkIr~iG-vSn~-~-~~~l~~l~~~~~~~~~ 182 (323)
........++++|-+ +. +.++|--|| ..+. + .+++.++++..++++.
T Consensus 134 ---------s~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 134 ---------SHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ---------CHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 011233444555542 22 233455565 2222 2 5788999998888654
No 45
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=65.30 E-value=1.3e+02 Score=28.67 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHcCCC-EEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEec--------cC--CCCCChHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYR-HIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTK--------VW--ITHFEPDMVVQACQ 100 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK--------~~--~~~~~~~~i~~~ve 100 (323)
++-.+-+..|.+.|.. ..|-+. .|+-..+-+++-+. .++=|.|= .. ..+.+.+.+...++
T Consensus 78 ~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~~--------s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~ 148 (432)
T COG0422 78 DEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIRN--------SPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVE 148 (432)
T ss_pred HHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHhc--------CCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHH
Confidence 4445567889999954 556654 46655555554321 11212110 11 13567788888888
Q ss_pred HHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCc
Q psy15050 101 NSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180 (323)
Q Consensus 101 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~ 180 (323)
+-.+ +-+|.+-||. .-.++.++.+++.|++ .|+-+-.-.-+...+-...
T Consensus 149 ~qa~----~GVdfmTIHa-----------------------GV~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~-- 197 (432)
T COG0422 149 KQAE----QGVDFMTIHA-----------------------GVLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH-- 197 (432)
T ss_pred HHHH----hCCcEEEeeh-----------------------hhhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC--
Confidence 8776 4467789995 2346788999999987 7777776655544332221
Q ss_pred ceEeeecccCCcC-hHHHHHHHHhcCcEEEEecCCCCCCCCC-----CC----CCCCChHHHHHHHHHcCC
Q psy15050 181 PVNLQIEVHPYLN-QRKLIDFCKKHNITVTAYSPLGAPWTNP-----DK----PLLINDDVLKEIADKYRK 241 (323)
Q Consensus 181 ~~~~q~~~~~~~~-~~~l~~~~~~~gI~via~spl~~G~~~~-----~~----~~~l~~~~l~~ia~~~~~ 241 (323)
.=||+.. -+++++.|+++++.+. ||.|++.. .+ .++....+|.+.|.++|+
T Consensus 198 ------~ENply~~fd~lleI~k~yDvtlS----LGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gV 258 (432)
T COG0422 198 ------KENPLYEHFDELLEIFKEYDVTLS----LGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGV 258 (432)
T ss_pred ------CcCchhhhHHHHHHHHHHhCeeee----ccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 1234333 3689999999998884 55554111 01 112223556666777764
No 46
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=64.16 E-value=1.5e+02 Score=29.01 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHhHhhcCCCC-CCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC----ceeEEEeecccccCCCCC
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIK-REELFITTKVWITHFEPDMVVQACQNSCKKLGLD----YVDLYLIHWPFAIKGKDV 127 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~-R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d----~iDl~~lH~p~~~~~~~~ 127 (323)
-.||.|+.|-++|+...+.. + .+=++|.|-+...-. -+.+..-+++.-++++-+ .+.++.+|.|... |
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~eiI-GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~-G--- 138 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCSTEII-GDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFK-G--- 138 (454)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHhhh-ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcC-C---
Confidence 35788888888888754432 2 234677777633211 111333333322222111 3678888988542 1
Q ss_pred CCCCccCCCCCccHHHHHHHHHH-HHH----cCCccEEEecC--CCHHHHHHHHHhCCCcceE
Q psy15050 128 HDTSFEGEHNNVSIEETWRGMEK-CVE----KGLAKSIGVSN--FNSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~aL~~-l~~----~GkIr~iGvSn--~~~~~l~~l~~~~~~~~~~ 183 (323)
........+++++-+ +.. +++|--||-.+ .+.++++++++..++++.+
T Consensus 139 --------s~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 139 --------SMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred --------CHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 001223334444332 221 46677776433 2346788888888875543
No 47
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=62.46 E-value=1.6e+02 Score=28.75 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCC---
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN--- 166 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~--- 166 (323)
.+++.+.+.+++....++ .++.+-+-.|.. +....+.+++.|..++++..=..+.+++..
T Consensus 60 Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GE---------------PLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l 122 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIP--QLSVVGIAGPGD---------------PLANIGKTFQTLELVARQLPDVKLCLSTNGLML 122 (442)
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEecCCC---------------cccCccccHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 577778787777766552 344455544321 123345677888888887321357888776
Q ss_pred HHHHHHHHHhCCCcceEeeecccCCcC-----------------------------hHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 167 SGQIKRILDCAKIKPVNLQIEVHPYLN-----------------------------QRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 167 ~~~l~~l~~~~~~~~~~~q~~~~~~~~-----------------------------~~~l~~~~~~~gI~via~spl~~G 217 (323)
++.++++.+.. + +.+.+.++..+. ..+-+..+.++|+.+....++-.|
T Consensus 123 ~e~i~~L~~~g-v--d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 123 PEHVDRLVDLG-V--GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred HHHHHHHHHCC-C--CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 46677776642 2 233333332221 113456678889998888888777
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHHhcCC---eEEec--cCcC-----ceec-ccCCHHHHHHHhcCCCCC
Q psy15050 218 WTNPDKPLLINDDVLKEIADKYRKSPAQVVLRYLVFLM---VCRLS--SGEH-----KVFV-EQGSPTEEHAIQSYSHLP 286 (323)
Q Consensus 218 ~~~~~~~~~l~~~~l~~ia~~~~~s~aq~al~w~l~~~---~v~i~--~~~~-----~~~~-~~Lt~~e~~~l~~~~~~~ 286 (323)
. +++.+.++++ |+...| +..+| ..+. ...+ -+.|+++++.+.+.-+..
T Consensus 200 i---------ND~~i~~l~~------------~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~ 258 (442)
T TIGR01290 200 I---------NDEHLVEVSK------------QVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMG 258 (442)
T ss_pred c---------CHHHHHHHHH------------HHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhh
Confidence 4 3344444432 333332 12334 2232 2222 368999999998765543
Q ss_pred CcccccccccccCC
Q psy15050 287 GELSNVCFTSQYDT 300 (323)
Q Consensus 287 ~~~~~~~~~~~~~~ 300 (323)
-....-|-.|+.|.
T Consensus 259 ~~~~~~c~~crada 272 (442)
T TIGR01290 259 TPQMRHCHQCRADA 272 (442)
T ss_pred hhhhHHHHhhcccc
Confidence 33344588888887
No 48
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=61.87 E-value=20 Score=31.41 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEe----cCCCHHHHHHHHHhCCCcceEeeecccCCcC--hHHHHHHHHhcCcEEEEec
Q psy15050 139 VSIEETWRGMEKCVEKGLAKSIGV----SNFNSGQIKRILDCAKIKPVNLQIEVHPYLN--QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 139 ~~~~~~~~aL~~l~~~GkIr~iGv----Sn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gI~via~s 212 (323)
...++..++|..++ +..|.. |.+....++.+.+..+++ .|.|+.. +.+++...-+.|..++.-+
T Consensus 73 ~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 73 REVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred hhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEE
Confidence 34566667777776 555543 444556678888877763 2456544 5688888888888887777
Q ss_pred CCCCCCCCCCCCCCCC---hHHHHHHHHHcCCCHH
Q psy15050 213 PLGAPWTNPDKPLLIN---DDVLKEIADKYRKSPA 244 (323)
Q Consensus 213 pl~~G~~~~~~~~~l~---~~~l~~ia~~~~~s~a 244 (323)
.-+.|+...-.-+.+. .+.++.++++||+.|+
T Consensus 143 Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 7777761110111222 2678888889988764
No 49
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=61.31 E-value=1.2e+02 Score=27.02 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEee-cccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIH-WPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+.+.+.+..++.+ .-|-|.||+-.-- +|... +. ......+.....++.+++.-.+ -|-+-++.++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~------~~-----~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~ 87 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAE------PV-----SVEEELERVIPVLRALAGEPDV-PISVDTFNAE 87 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC------cC-----CHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHH
Confidence 35566666665554 5789999987422 23210 00 0112233445566666655233 2899999999
Q ss_pred HHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G 217 (323)
.++.+++.+ .+.+|-+ +....+.++++.++++|..++.+..-+.|
T Consensus 88 v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~~~ 132 (258)
T cd00423 88 VAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDGTP 132 (258)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCCCC
Confidence 999999877 3344433 22222368999999999999988654433
No 50
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.04 E-value=1.2e+02 Score=26.44 Aligned_cols=98 Identities=19% Similarity=0.324 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~ 169 (323)
++.+ .+..+-+.|.++|+++|++- .|.. .....+.++.+.+.... .+-.+++......
T Consensus 11 ~~~~-~k~~i~~~L~~~Gv~~iEvg---~~~~----------------~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~ 68 (237)
T PF00682_consen 11 FSTE-EKLEIAKALDEAGVDYIEVG---FPFA----------------SEDDFEQVRRLREALPN--ARLQALCRANEED 68 (237)
T ss_dssp --HH-HHHHHHHHHHHHTTSEEEEE---HCTS----------------SHHHHHHHHHHHHHHHS--SEEEEEEESCHHH
T ss_pred cCHH-HHHHHHHHHHHhCCCEEEEc---cccc----------------CHHHHHHhhhhhhhhcc--cccceeeeehHHH
Confidence 3444 45556667999999999988 2221 12334455556555555 5556677777777
Q ss_pred HHHHHH---hCCCcceEeeecccCCc--------------ChHHHHHHHHhcCcEEE
Q psy15050 170 IKRILD---CAKIKPVNLQIEVHPYL--------------NQRKLIDFCKKHNITVT 209 (323)
Q Consensus 170 l~~l~~---~~~~~~~~~q~~~~~~~--------------~~~~l~~~~~~~gI~vi 209 (323)
++..++ ..+.+...+-+..|... .-.+.+.+++++|+.+.
T Consensus 69 i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~ 125 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA 125 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 766444 44554444444444411 12578999999999993
No 51
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.31 E-value=1.4e+02 Score=27.17 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQI 170 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l 170 (323)
+.+ -+..+-+.|.++|+++|.+-..+.|... | ...+.++.+..+.+...++...+. -....+
T Consensus 24 s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~------p----------~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~i 85 (287)
T PRK05692 24 PTA-DKIALIDRLSAAGLSYIEVASFVSPKWV------P----------QMADAAEVMAGIQRRPGVTYAALT-PNLKGL 85 (287)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeCCCcCcccc------c----------ccccHHHHHHhhhccCCCeEEEEe-cCHHHH
Confidence 443 4455666799999999999755444321 0 111234555555444446655654 467788
Q ss_pred HHHHHhCCCcceEeeecccCCc------C--------hHHHHHHHHhcCcEEEE
Q psy15050 171 KRILDCAKIKPVNLQIEVHPYL------N--------QRKLIDFCKKHNITVTA 210 (323)
Q Consensus 171 ~~l~~~~~~~~~~~q~~~~~~~------~--------~~~l~~~~~~~gI~via 210 (323)
+.+++.. .+...+-+..|..+ . -.+.+++++++|+.+.+
T Consensus 86 e~A~~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 86 EAALAAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8887653 32222222222211 0 14689999999999864
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.22 E-value=1.3e+02 Score=26.95 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCH-
Q psy15050 89 HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNS- 167 (323)
Q Consensus 89 ~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~- 167 (323)
.++.+ -+..+-+.|.++|+|+|++-+........ .+ -......+.|+.+..+.+ +..+..+++....
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~---------~~-~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 83 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEF---------KG-KSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGND 83 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCcccc---------CC-CccCCCHHHHHHHHhhhc-cCCEEEEEECCCCC
Confidence 34555 45566677999999999998765321100 00 001112456666666553 3466666665543
Q ss_pred --HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 168 --GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 168 --~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
..++.+.+ .+++..-+.+..+.+..-.+.+++++++|+.+...
T Consensus 84 ~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 84 DIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 44444432 33433333333333333468899999999987654
No 53
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.56 E-value=1.5e+02 Score=27.84 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRIL 174 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~ 174 (323)
-+..+-+.|.++|+++|++-..-.|... | ...+..+.++++.. ...++..++. .....++.++
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~v------P-------qmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~ 131 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWV------P-------QLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAI 131 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccc------c-------ccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHH
Confidence 5566777799999999998754444221 0 01223445555543 2335555554 4778889888
Q ss_pred HhCCCcceEeeecccCCcC--------h------HHHHHHHHhcCcEEEEec
Q psy15050 175 DCAKIKPVNLQIEVHPYLN--------Q------RKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 175 ~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gI~via~s 212 (323)
+.. .+.+.+-+..+..+. + .+++++++++|+.+.++-
T Consensus 132 ~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 132 AAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 753 322222222222111 1 478999999999996443
No 54
>PRK06361 hypothetical protein; Provisional
Probab=58.46 E-value=1.2e+02 Score=25.96 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC---hHHH---HHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT---EGDI---GEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKK 105 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~---E~~l---G~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~r 105 (323)
....++++.|.+.|+..|=.+++... ...+ -+..++. +. ...=+++...-+.. ..++.+ ..+...+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~--~~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~ 83 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-EL--YWDIEVIPGVELTH--VPPKLI-PKLAKKARD 83 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hh--cCCCEEEEEEEEcc--cCchhh-chHHHHHHH
Confidence 45689999999999999988887542 1111 1111111 00 01112344443321 223333 333355556
Q ss_pred hCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEee
Q psy15050 106 LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQ 185 (323)
Q Consensus 106 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q 185 (323)
++ .|+..+|..... .+.. .... .++.+.|.+.-+|=-..-...+.+++...++ .+.
T Consensus 84 ~~---~~~~svH~~~~~----------------~~~~-~~~~-~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~---~lE 139 (212)
T PRK06361 84 LG---AEIVVVHGETIV----------------EPVE-EGTN-LAAIECEDVDILAHPGLITEEEAELAAENGV---FLE 139 (212)
T ss_pred CC---CEEEEECCCCcc----------------hhhh-hhhH-HHHHhCCCCcEecCcchhhHHHHHHHHHcCe---EEE
Confidence 65 455689943211 0000 0011 4567888887666443322333344444443 223
Q ss_pred ecccC--CcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHH
Q psy15050 186 IEVHP--YLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVVLRY 250 (323)
Q Consensus 186 ~~~~~--~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~al~w 250 (323)
++... ......+++.+++.|+.++..|.-... ..+...+.+..++++.|.+..++---+
T Consensus 140 in~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~------~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 140 ITARKGHSLTNGHVARIAREAGAPLVINTDTHAP------SDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred EECCCCcccchHHHHHHHHHhCCcEEEECCCCCH------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33211 122468999999999998776655421 122345678888888898888765443
No 55
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=57.99 E-value=29 Score=25.24 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEec
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~s 212 (323)
++++++.|++. +| ..+..++++......+++--+..+ .....+...|++++|.++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 56777888752 33 367777777777666666655555 345688899999999997663
No 56
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=57.82 E-value=57 Score=28.38 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC---hHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN---QRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gI~via~spl~~G 217 (323)
++.+.+|.+...+. ..+=|.++...+.++++...+ .++|+..+..-. -.++..+|+++|+.++.++.+..+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 55667777776665 344555666777677665544 566666554322 368899999999999988776554
No 57
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=57.56 E-value=1.4e+02 Score=26.55 Aligned_cols=151 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChH--HHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEG--DIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD 109 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~--~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d 109 (323)
++..+.++.+.+.|++.|-.--.-..+. ..=+++++. -.+++.|.-... ..++.+...+-+ +.|+.++
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan-~~~~~~~a~~~~-~~l~~~~-- 156 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDAN-RGWTPKQAIRAL-RALEDLG-- 156 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCC-CCcCHHHHHHHH-HHHHhcC--
Confidence 5666777888899999887532211122 222444542 123455555542 334544333332 3344444
Q ss_pred ceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecc
Q psy15050 110 YVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEV 188 (323)
Q Consensus 110 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~ 188 (323)
+.++..|.+. +-++.+.++++.-.+. ..|=+-++...+.++++.... +++|+..
T Consensus 157 ---i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~v~~k~ 211 (265)
T cd03315 157 ---LDYVEQPLPA--------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DAVNIKT 211 (265)
T ss_pred ---CCEEECCCCc--------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CEEEEec
Confidence 4455666331 1245666777665555 445556677888888876655 5666665
Q ss_pred cCCcC---hHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 189 HPYLN---QRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 189 ~~~~~---~~~l~~~~~~~gI~via~spl~~G 217 (323)
...-. -.++...|+++|+.++..+.+.++
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 54322 368899999999999987666544
No 58
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=57.29 E-value=50 Score=32.93 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=56.8
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCC
Q psy15050 138 NVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 138 ~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl 214 (323)
..+..++.+.+.+.+++.+|+.||+-.+...++.++++..+++++.+...|.-+...-.-++..-.+|.-+..-.|+
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 45567889999999999999999999999999999999999876665555554444444555555555555544444
No 59
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=56.64 E-value=1.4e+02 Score=26.19 Aligned_cols=169 Identities=13% Similarity=0.106 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCce
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYV 111 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~i 111 (323)
....++++.|.+.|+..|=.+++...........+. .. ++-|-+-+-....+++.+...++ +. ...+
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~------~~--~i~Il~GiEi~~~~~~~~~~~~~----~~-~~~~ 82 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKPELED------LL--GFEIFRGVEIVASNPSKLRGLVG----KF-RKKV 82 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhHHHHH------hc--CCcEEeeEEEecCCHHHHHHHHH----hc-cCcc
Confidence 567899999999999988777764321100001111 01 22232222111223443333333 32 1246
Q ss_pred eEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCC------HHHHHHHHHhCCCcceEee
Q psy15050 112 DLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN------SGQIKRILDCAKIKPVNLQ 185 (323)
Q Consensus 112 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~------~~~l~~l~~~~~~~~~~~q 185 (323)
|++.+| |.. +.+ ...+.+.+.|.-||--... ...+.++....+ ..+.
T Consensus 83 d~v~v~-~~~--------------------~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~lE 135 (237)
T PRK00912 83 DVLAVH-GGD--------------------EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VAIE 135 (237)
T ss_pred cEEEEe-CCC--------------------HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eEEE
Confidence 888888 211 111 1357778888888865421 122323333333 4556
Q ss_pred ecccCCcC------------hHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHH
Q psy15050 186 IEVHPYLN------------QRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQV 246 (323)
Q Consensus 186 ~~~~~~~~------------~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~ 246 (323)
++++++.. ...++..|++.|+.++.-|=--. + ..+-.......++++.|.+..++
T Consensus 136 In~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~----~--~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 136 FNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS----C--YDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred EEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc----c--cccCCHHHHHHHHHHcCCCHHHH
Confidence 66665421 14789999999988865431111 1 12234567888888888877664
No 60
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=55.49 E-value=1.3e+02 Score=29.83 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccC
Q psy15050 55 YQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEG 134 (323)
Q Consensus 55 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 134 (323)
+|+++.|-++|++..+.. +.+-++|.|-+ .++-|-..++...++++.+.++++.++.|....
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g----------- 128 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRR----------- 128 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCccc-----------
Confidence 678888888888754432 22345555554 344455556666666665568899999885421
Q ss_pred CCCCccHHHHHHHHHH-H----------HHcCCccEEEecCC------CHHHHHHHHHhCCCcce
Q psy15050 135 EHNNVSIEETWRGMEK-C----------VEKGLAKSIGVSNF------NSGQIKRILDCAKIKPV 182 (323)
Q Consensus 135 ~~~~~~~~~~~~aL~~-l----------~~~GkIr~iGvSn~------~~~~l~~l~~~~~~~~~ 182 (323)
........+++++-+ + .+.++|--||.++. +..+++++++..++.+.
T Consensus 129 -~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn 192 (511)
T TIGR01278 129 -KENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVN 192 (511)
T ss_pred -chhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 001122233333322 1 13456888998763 44678889998887543
No 61
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=54.90 E-value=26 Score=31.67 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 165 FNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 165 ~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
|+...+.++.+..+++..++-+.|++... ++.++|++.|+.+++--|+..-.
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcchhH
Confidence 33456677778888888888888865544 89999999999999999986543
No 62
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=53.23 E-value=62 Score=27.97 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCc
Q psy15050 102 SCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS-NFNSGQIKRILDCAKIK 180 (323)
Q Consensus 102 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~l~~~~~~~ 180 (323)
.+..+|.||+-+.+...-.+ ..+.+ ..+.+.+.. .+.++.+||. |-+++.+.++.+..++
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR----------------~V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~- 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKR----------------HQTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSI- 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCcc----------------cCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCC-
Confidence 34569999999875432111 12223 334444333 2568889996 7777889998887654
Q ss_pred ceEeeecc
Q psy15050 181 PVNLQIEV 188 (323)
Q Consensus 181 ~~~~q~~~ 188 (323)
+++|++-
T Consensus 77 -d~vQLHG 83 (207)
T PRK13958 77 -NTIQLHG 83 (207)
T ss_pred -CEEEECC
Confidence 7888764
No 63
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=51.86 E-value=20 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHh
Q psy15050 232 LKEIADKYRKSPAQVVLRYLV 252 (323)
Q Consensus 232 l~~ia~~~~~s~aq~al~w~l 252 (323)
+.+||+++|+++.++|..|+-
T Consensus 16 FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 578999999999999999985
No 64
>PRK06740 histidinol-phosphatase; Validated
Probab=51.34 E-value=1.5e+02 Score=27.58 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEV 54 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~ 54 (323)
....+.|++|++.|+..|=-+++
T Consensus 61 ~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 61 KWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred chHHHHHHHHHHCCCcEEEECCC
Confidence 55789999999999998877666
No 65
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.21 E-value=2.1e+02 Score=26.71 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=26.3
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA 52 (323)
+|+.|.+... |+++. ++..++++...++||..|+.+
T Consensus 9 TLRDG~q~~~-----~~f~~--~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 9 TLRDGMHAIR-----HQFTI--EQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCCCCcCCC-----CcCCH--HHHHHHHHHHHHcCCCEEEEe
Confidence 4566665432 44444 788889999999999999994
No 66
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=50.01 E-value=95 Score=26.77 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=58.6
Q ss_pred HHhCCCceeEEEee-cccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHhCCCc
Q psy15050 104 KKLGLDYVDLYLIH-WPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVE--KGLAKSIGVSNFNSGQIKRILDCAKIK 180 (323)
Q Consensus 104 ~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~--~GkIr~iGvSn~~~~~l~~l~~~~~~~ 180 (323)
..-|-|+||+---- +|... + ......+......++.+++ .+. -|-|-++.++.++.+++. +.+
T Consensus 29 ~~~GAdiIDIg~~st~p~~~------~-----v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~ 94 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGAT------P-----VSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GAD 94 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSS------S-----SHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSS
T ss_pred HHhcCCEEEecccccCCCCC------c-----CCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-Ccc
Confidence 44689999986432 11110 0 0111223344455555554 233 488889999999999998 666
Q ss_pred ceEeeecccCCcChHHHHHHHHhcCcEEEEecCC
Q psy15050 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 181 ~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl 214 (323)
+..+...+. ...++++.++++|..++++.--
T Consensus 95 ~ind~~~~~---~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 95 IINDISGFE---DDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEETTTTS---SSTTHHHHHHHHTSEEEEESES
T ss_pred eEEeccccc---ccchhhhhhhcCCCEEEEEecc
Confidence 554433332 2678999999999999998666
No 67
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.48 E-value=2.3e+02 Score=26.63 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCce
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYV 111 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~i 111 (323)
++..+.++.+.+.|++.|=.-- .+. =+++++. --+++.|..-.. ..++.+... +-+++|. -+
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv----~~~-v~avre~------~G~~~~l~vDaN-~~w~~~~A~----~~~~~l~--~~ 189 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL----PKL-FEAVREK------FGFEFHLLHDVH-HRLTPNQAA----RFGKDVE--PY 189 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH----HHH-HHHHHhc------cCCCceEEEECC-CCCCHHHHH----HHHHHhh--hc
Confidence 5566677777889998875411 122 2344432 123454544432 334554322 2223332 34
Q ss_pred eEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccC
Q psy15050 112 DLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHP 190 (323)
Q Consensus 112 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~ 190 (323)
++.++-.|-+ .+-++.+.+|++...+. ..|=|-++...+..+++.... .++|+....
T Consensus 190 ~l~~iEeP~~--------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~--di~~~d~~~ 247 (361)
T cd03322 190 RLFWMEDPTP--------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI--DYIRTTVSH 247 (361)
T ss_pred CCCEEECCCC--------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC--CEEecCccc
Confidence 6777776643 12367788888887665 777778888899998876544 666766554
Q ss_pred Cc---ChHHHHHHHHhcCcEEEEecCC
Q psy15050 191 YL---NQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 191 ~~---~~~~l~~~~~~~gI~via~spl 214 (323)
.- .-.++.+.|+++|+.++.++..
T Consensus 248 ~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 248 AGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 22 2368999999999999876544
No 68
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=48.94 E-value=2e+02 Score=25.76 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEe-ecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLI-HWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+.+.+.+..++.+ +-|-|.||+-.- -+|... ...+...++.....++.+++.-.+- |-+-++.++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~-----------~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~ 87 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGAD-----------PVSVEEELERVIPVLEALRGELDVL-ISVDTFRAE 87 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-----------CCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHH
Confidence 34455555544443 468999998642 223221 0011122333444456666653443 899999999
Q ss_pred HHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecC
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~sp 213 (323)
.++++++.+ . ..+|-+ +....+.++++.++++|..++.+..
T Consensus 88 v~e~al~~G-~-~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 88 VARAALEAG-A-DIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHhC-C-CEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 999999875 2 244333 3322236899999999999999654
No 69
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=48.49 E-value=2.4e+02 Score=26.56 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCCcEEEEeccCC--CCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWI--THFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCV 152 (323)
Q Consensus 75 ~R~~v~i~tK~~~--~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~ 152 (323)
.+.-++|.+|.-. ...+.+.+.+.+.+.++.+|....+++++-.-. ...+.+.++.|.++.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-----------------g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-----------------GNGIDELLDKIKKAR 152 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-----------------CCCHHHHHHHHHHHh
Confidence 3456889999832 223345566666666777776544666554321 345788888888887
Q ss_pred HcCCccEEEecCCCHHHHH-HHHH
Q psy15050 153 EKGLAKSIGVSNFNSGQIK-RILD 175 (323)
Q Consensus 153 ~~GkIr~iGvSn~~~~~l~-~l~~ 175 (323)
+.+.|-.+|.+|..-..+- .++.
T Consensus 153 ~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 153 NKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHh
Confidence 7778999999999987654 4444
No 70
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.82 E-value=1.6e+02 Score=25.27 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHcCCCEEeCC----------CCCCC-----hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTA----------EVYQT-----EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMV 95 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i 95 (323)
.++..+..+.+.++|+..||-- +.||+ -+.+-+.++.. .+. .. +-|..|+.......+..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~-~~---~~v~vk~r~~~~~~~~~ 140 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REA-VP---IPVTVKIRLGWDDEEET 140 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHh-cC---CCEEEEEeeccCCchHH
Confidence 4677788888889999999853 34662 34444444432 111 11 44555653221111123
Q ss_pred HHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHH
Q psy15050 96 VQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF-NSGQIKRIL 174 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~l~ 174 (323)
.+-+ +.|+..|+ |.+.+|....... ......|+.+.++++.-.+.-++.... +.+++.+++
T Consensus 141 ~~~~-~~l~~~Gv---d~i~v~~~~~~~~--------------~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 141 LELA-KALEDAGA---SALTVHGRTREQR--------------YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred HHHH-HHHHHhCC---CEEEECCCCHHHc--------------CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHH
Confidence 3322 33555675 4456675432100 000113566677777767777777766 467777777
Q ss_pred HhCCC
Q psy15050 175 DCAKI 179 (323)
Q Consensus 175 ~~~~~ 179 (323)
+..+.
T Consensus 203 ~~~ga 207 (231)
T cd02801 203 EQTGV 207 (231)
T ss_pred HhcCC
Confidence 76444
No 71
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.66 E-value=2.2e+02 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=25.5
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHc-CCCEEeCCCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDA-GYRHIDTAEV 54 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~-Gi~~~DTA~~ 54 (323)
+|+.|.+-+.+.|.+ ++..++++..++. ||+.|+....
T Consensus 4 TlRDG~Q~~~~~~s~-------e~K~~i~~~L~~~~Gv~~IEvg~~ 42 (280)
T cd07945 4 TLRDGEQTSGVSFSP-------SEKLNIAKILLQELKVDRIEVASA 42 (280)
T ss_pred CCCCcCcCCCCccCH-------HHHHHHHHHHHHHhCCCEEEecCC
Confidence 456777765554432 6667777776544 9999998754
No 72
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=47.41 E-value=2.3e+02 Score=26.14 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCCChHHH----HHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHh
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQTEGDI----GEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKL 106 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~l----G~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rL 106 (323)
.++..++++.+.+.|+..|--+ |.|..+ -+.++.. .+.. ...++.|+|-.. .+.+ .-+.|...
T Consensus 47 ~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i-~~~~-~l~~i~itTNG~-------ll~~-~~~~L~~a 113 (329)
T PRK13361 47 LEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARL-GKLP-GLEELSLTTNGS-------RLAR-FAAELADA 113 (329)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHH-HhCC-CCceEEEEeChh-------HHHH-HHHHHHHc
Confidence 4678888998999999887654 433322 2233221 1110 122566666531 1222 34556677
Q ss_pred CCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q psy15050 107 GLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL 156 (323)
Q Consensus 107 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk 156 (323)
|++++- +-|+.+++..-..+ .....+..++++++.+++.|.
T Consensus 114 Gl~~v~-ISlDs~~~e~~~~i--------~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 114 GLKRLN-ISLDTLRPELFAAL--------TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred CCCeEE-EEeccCCHHHhhhh--------cCCCCHHHHHHHHHHHHHcCC
Confidence 887765 34454432100000 012346677777777777664
No 73
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.27 E-value=2.1e+02 Score=25.63 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-ccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL-AKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk-Ir~iGvSn~~~~ 168 (323)
++.+. +..+-+.|.++|++.|.+-. |.. . .+.+++.+.+.+.++ .+-.+......+
T Consensus 19 ~s~~~-k~~i~~~L~~~Gv~~IEvG~---P~~----------------~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~ 75 (262)
T cd07948 19 FDTED-KIEIAKALDAFGVDYIELTS---PAA----------------S---PQSRADCEAIAKLGLKAKILTHIRCHMD 75 (262)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEEC---CCC----------------C---HHHHHHHHHHHhCCCCCcEEEEecCCHH
Confidence 34443 44455569999999998874 432 1 223444444444333 344556666778
Q ss_pred HHHHHHHhCCCcceEeeecccCCc------C---h-----HHHHHHHHhcCcEEEEecCCCCC
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYL------N---Q-----RKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~------~---~-----~~l~~~~~~~gI~via~spl~~G 217 (323)
.++.+.+. +++...+-+..|..+ . + .+++.+++++|+.+.....-+.+
T Consensus 76 di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r 137 (262)
T cd07948 76 DARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFR 137 (262)
T ss_pred HHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCC
Confidence 88888774 443222222222211 1 1 46778999999887665443333
No 74
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=47.13 E-value=44 Score=32.42 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCCcEEEEeccCCCCC-ChHH--------HHHHHH--HHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHH
Q psy15050 75 KREELFITTKVWITHF-EPDM--------VVQACQ--NSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEE 143 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~-~~~~--------i~~~ve--~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 143 (323)
-+.+++|++-++.-.- .+-. |.-.|+ +.-+||.+.|+|.. ..++++
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-----------------------a~~lde 221 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-----------------------AETLDE 221 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-----------------------cCCHHH
Confidence 5778999888854211 1100 111122 23378889999854 246789
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC-CcceEeeeccc
Q psy15050 144 TWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK-IKPVNLQIEVH 189 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~-~~~~~~q~~~~ 189 (323)
+++..++..++|+-.+||+-..-++.+.++++..- .+.+.-|.+.|
T Consensus 222 Al~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 222 ALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 99999999999999999999998899999887642 35555666544
No 75
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=46.25 E-value=1.6e+02 Score=26.52 Aligned_cols=74 Identities=23% Similarity=0.141 Sum_probs=51.5
Q ss_pred h-HHHHHHHHHHHcCCCEEeCCCCCCC-----h--HHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHH
Q psy15050 32 G-DVKNAVLAAIDAGYRHIDTAEVYQT-----E--GDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSC 103 (323)
Q Consensus 32 ~-~~~~~l~~A~~~Gi~~~DTA~~Yg~-----E--~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL 103 (323)
+ +..++.+.|+++|..|+=|+..|+. | +++-+++++. + ..++ +--|....-.+.+...+-++.--
T Consensus 146 ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~--vgIKAsGGIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 146 EALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKT--VGFKPAGGVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCC--eeEEccCCCCCHHHHHHHHHHHH
Confidence 5 4788999999999999999999962 2 2333333321 0 1122 44555444468888889999999
Q ss_pred HHhCCCcee
Q psy15050 104 KKLGLDYVD 112 (323)
Q Consensus 104 ~rLg~d~iD 112 (323)
+.||.++++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999998876
No 76
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=46.10 E-value=52 Score=27.10 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC-hHHHHHHHHhHhhcCCCCCCcEEEEec-cCCCCCChHHHHHHHHHHHHHhCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT-EGDIGEAIKEKINSGDIKREELFITTK-VWITHFEPDMVVQACQNSCKKLGLD 109 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK-~~~~~~~~~~i~~~ve~SL~rLg~d 109 (323)
+...-++++|-+.||.+|=.|+.||. ...+-+.+.+ . =+++++|- .+...-+...+.+.+++-|+..|.+
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 34455688888999999999999984 2222222221 1 23555554 3333344556788899999999965
No 77
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=45.99 E-value=82 Score=29.58 Aligned_cols=66 Identities=6% Similarity=0.026 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEec
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~s 212 (323)
++.+.+|.+...|. ..|=|-++...+.++++...+ .++|+.....- .-.++..+|+++|+.++..+
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceeecC
Confidence 45566666654444 455555566666666665443 34454433321 12567777777777776543
No 78
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.83 E-value=2.3e+02 Score=25.26 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=26.5
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA 52 (323)
+|+.|.+.+. |.++. ++..++++...++||..++..
T Consensus 7 TlRDG~Q~~~-----~~~~~--~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 7 TLRDGMHAVR-----HQFTL--EQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CCCcCcccCC-----eecCH--HHHHHHHHHHHHcCCCEEEee
Confidence 4566766532 33333 788889999999999999997
No 79
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=44.24 E-value=78 Score=23.84 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 145 WRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 145 ~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
-++|...++.|++. +| ..+..+.+.....+.+++-.+... .....+..+|++++|.++-|
T Consensus 5 ~~~l~~a~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 5 NRELRVAVDTGKVI-LG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHcCCEE-Ec-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 45688888888873 33 366777777777666666555432 33478899999999998776
No 80
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.09 E-value=3.4e+02 Score=27.04 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC-CCceeEEEeecccccCCCCCCCCCcc
Q psy15050 55 YQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG-LDYVDLYLIHWPFAIKGKDVHDTSFE 133 (323)
Q Consensus 55 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~~ 133 (323)
+|.++.+-++|++..+.. ..+=++|.|-+ .++-|-..++...++++ ..-++++.+|.|... +.
T Consensus 67 ~Gg~~kL~~~I~~~~~~~--~P~~I~V~tTC-----~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~-g~-------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE--RPDLIVLTPTC-----TSSILQEDLQNFVDRASIESDSDVILADVNHYR-VN-------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEECCCC-----chhhhhcCHHHHHHHhhcccCCCEEEeCCCCCc-cc--------
Confidence 466777677777643322 23345555544 22333333444433333 113689999998432 10
Q ss_pred CCCCCccHHHHHHHHHHH---------------HHcCCccEEEecC------CCHHHHHHHHHhCCCcceEee-e-----
Q psy15050 134 GEHNNVSIEETWRGMEKC---------------VEKGLAKSIGVSN------FNSGQIKRILDCAKIKPVNLQ-I----- 186 (323)
Q Consensus 134 ~~~~~~~~~~~~~aL~~l---------------~~~GkIr~iGvSn------~~~~~l~~l~~~~~~~~~~~q-~----- 186 (323)
.......+++++-+. +..++|--||.++ .+..+++++++..++++..+- .
T Consensus 131 ---~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~ 207 (513)
T CHL00076 131 ---ELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVE 207 (513)
T ss_pred ---HHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 001112223222221 1346688888774 345678888888877443111 0
Q ss_pred --------cccCCc-Ch--HHHHHHHH-hcCcEEEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCH
Q psy15050 187 --------EVHPYL-NQ--RKLIDFCK-KHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSP 243 (323)
Q Consensus 187 --------~~~~~~-~~--~~l~~~~~-~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~ 243 (323)
.+|+.. ++ ..+-++.+ +.|+.++...|+|-. -..+-++++++..|...
T Consensus 208 di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~---------~T~~fLr~la~~lg~~~ 267 (513)
T CHL00076 208 DLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIV---------DTAECIRQIQKILNKLA 267 (513)
T ss_pred HHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCHH---------HHHHHHHHHHHHhCCCc
Confidence 111111 11 23444444 458888776776532 13466888888888754
No 81
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=43.88 E-value=2.6e+02 Score=25.62 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCCCccCccccccCcCCC------CchHHHHHHHHHH-HcCCCEEeCCCCCCC------hHHHHHHHHhHhhcCCCCCCc
Q psy15050 12 NNGQEIPALGLGTWQGEP------GSGDVKNAVLAAI-DAGYRHIDTAEVYQT------EGDIGEAIKEKINSGDIKREE 78 (323)
Q Consensus 12 ~tg~~vs~lglGt~~~~~------~~~~~~~~l~~A~-~~Gi~~~DTA~~Yg~------E~~lG~al~~~~~~~~~~R~~ 78 (323)
..|.+| .|.||.|.... +.++..+.+...+ ..|.+.+|---.|+. -..+-++|+..-+.. ..
T Consensus 65 ~~G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~----p~ 139 (294)
T cd06543 65 AAGGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEY----PD 139 (294)
T ss_pred HcCCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHC----CC
Confidence 345554 56888876431 2344444444455 449999997666652 145566776543222 24
Q ss_pred EEEEecc--CCCCCChHHHHHHHHHHHHHhCC--CceeEEEeecccccCCCCCCCCCccCCCCCcc-HHHHHHHHHHHHH
Q psy15050 79 LFITTKV--WITHFEPDMVVQACQNSCKKLGL--DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVS-IEETWRGMEKCVE 153 (323)
Q Consensus 79 v~i~tK~--~~~~~~~~~i~~~ve~SL~rLg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~aL~~l~~ 153 (323)
+.|+--+ .+...++..+ .+-++.+.-|+ |+|.++-+..-.. ....+ -..+..+.+.++.
T Consensus 140 l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~--------------~~~~~mg~~a~~aa~~~~~ 203 (294)
T cd06543 140 LKISFTLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSS--------------AGSQDMGAAAISAAESLHD 203 (294)
T ss_pred cEEEEecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCC--------------CCcccHHHHHHHHHHHHHH
Confidence 4444433 3444444322 24445555664 4444444322110 00112 2445566666555
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccC--CcC--hHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 154 KGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHP--YLN--QRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 154 ~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~--~~~--~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
+=+--+=+ ++.. ++....++-|++=+..... +.. -..+.++++++||+.+++-.+.+..
T Consensus 204 ql~~~~~~---~s~~---~~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 204 QLKDLYPK---LSDA---ELWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHHHccC---CCHH---HHHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 42111111 2222 2233344444544433322 111 3689999999999999998887653
No 82
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.83 E-value=3.1e+02 Score=26.85 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccE---------EEecCCCHH
Q psy15050 99 CQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKS---------IGVSNFNSG 168 (323)
Q Consensus 99 ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~---------iGvSn~~~~ 168 (323)
+-..|.++|++.|.+. ... . ++... + ...++.|+.++.+++. ..++. +|.+++.-+
T Consensus 31 ia~~Ld~~Gv~~IE~~----gga----t-f~~~~--~---f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 31 ILEKLDNAGYHSLEMW----GGA----T-FDACL--R---FLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred HHHHHHHcCCCEEEec----CCc----c-chhhh--c---cCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchh
Confidence 4455888899999983 110 0 00000 0 0011246666666665 22332 566666544
Q ss_pred HHH----HHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEE
Q psy15050 169 QIK----RILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTA 210 (323)
Q Consensus 169 ~l~----~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via 210 (323)
.++ ++.+ ++++..-+=...|....-.+.+++++++|..+.+
T Consensus 97 vv~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 97 VVESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred hHHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 333 3333 3443222222233333335788999999987643
No 83
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.36 E-value=2.5e+02 Score=25.12 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=28.4
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAE 53 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~ 53 (323)
+|+.|.+.+...|. . ++..++++...++||..|+...
T Consensus 7 TLRDG~Q~~~~~~s-----~--~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 7 TLREGEQFANAFFD-----T--EDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCcCcCCCCCCC-----H--HHHHHHHHHHHHcCCCEEEEEC
Confidence 56777776654443 2 7888999999999999999864
No 84
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=42.07 E-value=2.2e+02 Score=29.12 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCcce
Q psy15050 104 KKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS-NFNSGQIKRILDCAKIKPV 182 (323)
Q Consensus 104 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~l~~~~~~~~~ 182 (323)
..+|.|++-+.+.....+ ..+.+...+.+.+......++.|||- |-+.+.+.++.+...+ +
T Consensus 20 ~~~gaD~iGfIf~~~SpR----------------~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~l--d 81 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPR----------------FVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGI--D 81 (610)
T ss_pred HHcCCCEEEEEecCCCCC----------------CCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCC--C
Confidence 458999999886543211 12233313344443333457889995 7777889888877755 7
Q ss_pred Eeeeccc
Q psy15050 183 NLQIEVH 189 (323)
Q Consensus 183 ~~q~~~~ 189 (323)
++|++-.
T Consensus 82 ~vQLHG~ 88 (610)
T PRK13803 82 FVQLHGA 88 (610)
T ss_pred EEEECCC
Confidence 7787643
No 85
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=41.95 E-value=1e+02 Score=29.03 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecCC
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~spl 214 (323)
+..+.+|++...+. ..|=|-++...+.++++...+ +++|+.....- .-.++...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45555666655444 556666666666666665543 44555444321 1246777777777777655433
No 86
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=41.93 E-value=1.4e+02 Score=28.70 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecCC
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~spl 214 (323)
++.+.+|++.-.|. ..|=|-++...+.++++...+ .++|+.....- .-.++...|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 56777888776565 677778888999999887654 66666555422 2368999999999999887554
No 87
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=41.61 E-value=3.5e+02 Score=26.49 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC---C--CceeEEEeecccccCCCCC
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG---L--DYVDLYLIHWPFAIKGKDV 127 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg---~--d~iDl~~lH~p~~~~~~~~ 127 (323)
-.||.|+.|-++|+...+..+ +.+=++|.|-.... .--+.+..-+++.-++++ . -.+.++.+|.|....
T Consensus 72 ~VfGg~~~L~~ai~~~~~~~~-~p~~i~v~ttc~~e-iiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g---- 145 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTRYP-DVKVVPIITTCSTE-IIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVG---- 145 (461)
T ss_pred eEECcHHHHHHHHHHHHHhcC-CCCEEEEECCchHH-hhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC----
Confidence 347888888888887554321 12345666665321 111224444444434332 1 135789999875421
Q ss_pred CCCCccCCCCCccHHHHHHHHHH-HHH----cCCccEEEecC--CCHHHHHHHHHhCCCcce
Q psy15050 128 HDTSFEGEHNNVSIEETWRGMEK-CVE----KGLAKSIGVSN--FNSGQIKRILDCAKIKPV 182 (323)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~aL~~-l~~----~GkIr~iGvSn--~~~~~l~~l~~~~~~~~~ 182 (323)
........++++|-+ +.. +++|--||-.+ -+.+++.++++..++++.
T Consensus 146 --------s~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 146 --------SMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred --------cHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 001223344444332 222 46688888543 245778899998888654
No 88
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=41.39 E-value=2.6e+02 Score=24.86 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCC--cEEEEeccCCCCCChHHHHHHHHHHHHHhCCCcee
Q psy15050 35 KNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKRE--ELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVD 112 (323)
Q Consensus 35 ~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~--~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iD 112 (323)
.+.+..|-+.|. ++. . ....+.++++.... .+. .+.++..+.+.......+...+.+.+++.+++.-
T Consensus 52 ~~Fi~~aE~~gl--i~~---l-~~~v~~~a~~~~~~----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~- 120 (256)
T COG2200 52 GEFIPLAEETGL--IVE---L-GRWVLEEACRQLRT----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH- 120 (256)
T ss_pred HHHHHHHHHcCC--HHH---H-HHHHHHHHHHHHHh----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-
Confidence 456666666664 000 0 23456666655321 112 4777777755444445677788888888887542
Q ss_pred EEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHhCCCcceEeeecccC
Q psy15050 113 LYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNS--GQIKRILDCAKIKPVNLQIEVHP 190 (323)
Q Consensus 113 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~--~~l~~l~~~~~~~~~~~q~~~~~ 190 (323)
-+.+--... ........+...+..|++.| -.|.+.+|+. ..+..+.+ .+|+.+-+.-+.
T Consensus 121 ~l~lEitE~--------------~~~~~~~~~~~~l~~L~~~G--~~ialDDFGtG~ssl~~L~~---l~~d~iKID~~f 181 (256)
T COG2200 121 RLVLEITES--------------ALIDDLDTALALLRQLRELG--VRIALDDFGTGYSSLSYLKR---LPPDILKIDRSF 181 (256)
T ss_pred eEEEEEeCc--------------hhhcCHHHHHHHHHHHHHCC--CeEEEECCCCCHHHHHHHhh---CCCCeEEECHHH
Confidence 222221111 00123346778999999999 3478888876 34555543 233443333322
Q ss_pred CcC----------hHHHHHHHHhcCcEEEEe
Q psy15050 191 YLN----------QRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 191 ~~~----------~~~l~~~~~~~gI~via~ 211 (323)
... -..++..|++.|+.++|-
T Consensus 182 i~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 182 VRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred HhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 211 157899999999999985
No 89
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=41.33 E-value=1.1e+02 Score=26.78 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhCCCcceEee--ecccCCcCh-----HHHHHHHHhcCcEEEEecCCCCCCCCCC--CCCCC--ChHHHHH
Q psy15050 166 NSGQIKRILDCAKIKPVNLQ--IEVHPYLNQ-----RKLIDFCKKHNITVTAYSPLGAPWTNPD--KPLLI--NDDVLKE 234 (323)
Q Consensus 166 ~~~~l~~l~~~~~~~~~~~q--~~~~~~~~~-----~~l~~~~~~~gI~via~spl~~G~~~~~--~~~~l--~~~~l~~ 234 (323)
++.+++.+.+.+++.++.+- ++||-|..+ .++.+|++.-|-.-+...|+..|..+.+ .++.+ .-+.++.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkp 129 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKP 129 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhH
Confidence 34677777777777444322 345555543 5899999999999999999998752211 11111 2367788
Q ss_pred HHHHcCCC
Q psy15050 235 IADKYRKS 242 (323)
Q Consensus 235 ia~~~~~s 242 (323)
|-+++|++
T Consensus 130 il~~~gi~ 137 (272)
T COG4130 130 ILDEYGIT 137 (272)
T ss_pred HHHHhCcc
Confidence 88888763
No 90
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.04 E-value=1.1e+02 Score=26.41 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCcce
Q psy15050 104 KKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS-NFNSGQIKRILDCAKIKPV 182 (323)
Q Consensus 104 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~l~~~~~~~~~ 182 (323)
..+|.|++-+.+...-.+ ..+ .+..+.+.... .+.+..+||. |-+++.+.++++..++ .
T Consensus 20 ~~~Gad~iGfI~~~~S~R----------------~V~-~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~--d 79 (210)
T PRK01222 20 AELGADAIGFVFYPKSPR----------------YVS-PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPL--D 79 (210)
T ss_pred HHcCCCEEEEccCCCCCC----------------cCC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCC--C
Confidence 458999999874332111 122 23333333332 3568999987 5567888888887755 7
Q ss_pred Eeeecc
Q psy15050 183 NLQIEV 188 (323)
Q Consensus 183 ~~q~~~ 188 (323)
++|++-
T Consensus 80 ~vQLHg 85 (210)
T PRK01222 80 LLQLHG 85 (210)
T ss_pred EEEECC
Confidence 888754
No 91
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=40.92 E-value=35 Score=31.36 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q psy15050 92 PDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIK 171 (323)
Q Consensus 92 ~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~ 171 (323)
.+.+++.+.+-+++.|+|++=++-.-.-.++. + .......++++|++..+++.-. .++..+-
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~-----~-------~~~~~~~t~~~l~~al~~~~~~------~~aS~~Y 192 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYI-----P-------VIPGVHDTLEALEKALDENDPE------ISASMLY 192 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---------------CCCCCSSHHHHHHHHHTT-TT------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCC-----C-------CCccccCCHHHHHHHhhcCCCc------CChHHHH
Confidence 45688899999999999865444333222210 0 0011224677888887764332 1122221
Q ss_pred -HHHHhCCCcceEeeecccCC--cChHHHHHHHHhcCcEEEEe---cCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHH
Q psy15050 172 -RILDCAKIKPVNLQIEVHPY--LNQRKLIDFCKKHNITVTAY---SPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQ 245 (323)
Q Consensus 172 -~l~~~~~~~~~~~q~~~~~~--~~~~~l~~~~~~~gI~via~---spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq 245 (323)
.+.-..++ .. +|+.|- .....+.+.++++|+.+.+- +|++.|+ ++..-.+.++|.+.|....+
T Consensus 193 A~AAl~~g~--~f--vN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAApl-------vlDLirl~~la~r~g~~Gv~ 261 (295)
T PF07994_consen 193 AYAALEAGV--PF--VNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPL-------VLDLIRLAKLALRRGMGGVQ 261 (295)
T ss_dssp HHHHHHTTE--EE--EE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHH-------HHHHHHHHHHHHHTTS-EEH
T ss_pred HHHHHHCCC--Ce--EeccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHH-------HHHHHHHHHHHHHcCCCChh
Confidence 11112333 22 234443 33578999999999998762 2222221 22335788899999888888
Q ss_pred HHHHHHhcCCe
Q psy15050 246 VVLRYLVFLMV 256 (323)
Q Consensus 246 ~al~w~l~~~~ 256 (323)
-.++|....|.
T Consensus 262 ~~ls~ffK~P~ 272 (295)
T PF07994_consen 262 EWLSFFFKSPM 272 (295)
T ss_dssp HHHHHHBSS-T
T ss_pred HHHHHHhcCCC
Confidence 88899888775
No 92
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=40.44 E-value=1.6e+02 Score=23.82 Aligned_cols=63 Identities=3% Similarity=0.002 Sum_probs=43.5
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC--CCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLG--LDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCV 152 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~ 152 (323)
+|=-+.|+-|++. ......+++.+.++.+.+. ....|++++..+.. ..++.+....|..+.
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~----------------~~~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS----------------QPDFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEecccc----------------CCCHHHHHHHHHHHH
Confidence 4666888888764 4567778888888887663 35689999987643 255666666666655
Q ss_pred Hc
Q psy15050 153 EK 154 (323)
Q Consensus 153 ~~ 154 (323)
++
T Consensus 109 ~~ 110 (138)
T PRK00730 109 PE 110 (138)
T ss_pred HH
Confidence 43
No 93
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=40.05 E-value=83 Score=29.82 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh--HHHHHHHHhcCcEEEEecCCCCCCCC
Q psy15050 143 ETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAYSPLGAPWTN 220 (323)
Q Consensus 143 ~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gI~via~spl~~G~~~ 220 (323)
+-..++.+|.+.|.+.+|-.-....-.+..+...-.-+|. -.|.+...+ ..+++.|+++||.||..+ +|. +
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~-n 82 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL-N 82 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC-C
Confidence 3456788888999999997644443333222211111122 113332222 579999999999999874 332 1
Q ss_pred CCCCCCCChHHHHHHHHHcCCC
Q psy15050 221 PDKPLLINDDVLKEIADKYRKS 242 (323)
Q Consensus 221 ~~~~~~l~~~~l~~ia~~~~~s 242 (323)
| .-..+.+++++++.|.+
T Consensus 83 ---p-~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 ---P-AGCADIVREIARELGLS 100 (362)
T ss_pred ---H-HHHHHHHHHHHHhcCCC
Confidence 1 11336677788877765
No 94
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.78 E-value=3.2e+02 Score=25.53 Aligned_cols=38 Identities=5% Similarity=-0.017 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCcce
Q psy15050 145 WRGMEKCVEKGLAKSIGVSNF-NSGQIKRILDCAKIKPV 182 (323)
Q Consensus 145 ~~aL~~l~~~GkIr~iGvSn~-~~~~l~~l~~~~~~~~~ 182 (323)
|......++.=++--|++.+. +++.++++++....+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V 312 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCee
Confidence 445555555546677787775 66888888877655433
No 95
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=39.60 E-value=1.9e+02 Score=25.28 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCEEeC-CCCCC--ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCC--C-----CChHHHHHHHHHHHHHhCCCceeEEE
Q psy15050 46 YRHIDT-AEVYQ--TEGDIGEAIKEKINSGDIKREELFITTKVWIT--H-----FEPDMVVQACQNSCKKLGLDYVDLYL 115 (323)
Q Consensus 46 i~~~DT-A~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~--~-----~~~~~i~~~ve~SL~rLg~d~iDl~~ 115 (323)
.+.++. +..|+ +.+.+.+|.++ ..+++..+-|++.. + ...+.+.+.+-+.++-|| +.+..++
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL 90 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPIL 90 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEE
Confidence 444443 33576 58888888764 45789999998542 1 124555355555999999 8999999
Q ss_pred eecccc
Q psy15050 116 IHWPFA 121 (323)
Q Consensus 116 lH~p~~ 121 (323)
+.-|..
T Consensus 91 ~Q~Pps 96 (230)
T PF01904_consen 91 FQFPPS 96 (230)
T ss_dssp EE--TT
T ss_pred EEcCCC
Confidence 998854
No 96
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=39.55 E-value=1.8e+02 Score=22.73 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=41.5
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC--CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLGL--DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCV 152 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~ 152 (323)
+|=-+.|+-|++........+++.+.++.+.... ...|++++..+... ..+..+..+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~---------------~~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD---------------RATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 4555777777554455677788888888765442 35699999987532 345566666666555
Q ss_pred H
Q psy15050 153 E 153 (323)
Q Consensus 153 ~ 153 (323)
+
T Consensus 109 ~ 109 (120)
T PRK04390 109 A 109 (120)
T ss_pred H
Confidence 4
No 97
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.39 E-value=1e+02 Score=26.76 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC-hHHHH--HHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT-EGDIG--EAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGL 108 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~-E~~lG--~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~ 108 (323)
++...+.+.+.++|..|+=|+..|+. -..++ +.+++. -+++ +-.|....-.+.+...+-++.--.|+|+
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~------v~~~--v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT------VGDT--IGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH------hccC--CeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 67779999999999999999988862 11111 223332 1122 3344433334788888889999999998
Q ss_pred Cc
Q psy15050 109 DY 110 (323)
Q Consensus 109 d~ 110 (323)
+.
T Consensus 204 s~ 205 (211)
T TIGR00126 204 SA 205 (211)
T ss_pred ch
Confidence 74
No 98
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=39.30 E-value=3.6e+02 Score=26.02 Aligned_cols=113 Identities=20% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCc
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSF 132 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 132 (323)
-.||.|+.|-++|++..+.. +.+-++|.|-.... .--+.+..-+++. ++++ ++++.+|.|... |
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC~~~-~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~-g-------- 129 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSII--DADLFVVLTGCIAE-IIGDDVGAVVSEF-QEGG---APIVYLETGGFK-G-------- 129 (427)
T ss_pred eEeCCHHHHHHHHHHHHHhC--CCCEEEEEcCCcHH-HhhcCHHHHHHHh-hhcC---CCEEEEECCCcC-c--------
Confidence 35788888888888754432 34557777665321 1111233333333 3333 678889987542 1
Q ss_pred cCCCCCccHHHHHHHHHH-HH------HcCCccEEEecC-------CCHHHHHHHHHhCCCcceEe
Q psy15050 133 EGEHNNVSIEETWRGMEK-CV------EKGLAKSIGVSN-------FNSGQIKRILDCAKIKPVNL 184 (323)
Q Consensus 133 ~~~~~~~~~~~~~~aL~~-l~------~~GkIr~iGvSn-------~~~~~l~~l~~~~~~~~~~~ 184 (323)
........++++|-+ +. +.+.|--||..+ .+.+++.++++..++++..+
T Consensus 130 ---~~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 130 ---NNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ---ccccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 112334445555543 22 235688888643 23578999999988865443
No 99
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=39.25 E-value=3.3e+02 Score=25.49 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCCEEeCCCC-------------------CC-C-h---HHHH---HHHHhHhhcCCCCCCcEEEEecc
Q psy15050 33 DVKNAVLAAIDAGYRHIDTAEV-------------------YQ-T-E---GDIG---EAIKEKINSGDIKREELFITTKV 85 (323)
Q Consensus 33 ~~~~~l~~A~~~Gi~~~DTA~~-------------------Yg-~-E---~~lG---~al~~~~~~~~~~R~~v~i~tK~ 85 (323)
+..+..+.|.++|+..++-... || + | +.+- +++++. --+++.|..|+
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~------vG~d~~v~iRi 211 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAA------VGEDFIIIYRL 211 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHH------cCCCceEEEEe
Confidence 3445566778899999886331 33 2 1 2222 233331 23567788887
Q ss_pred CCCC-----CChHHHHHHHHHHHHHhCCCceeEE-Eeec-ccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc
Q psy15050 86 WITH-----FEPDMVVQACQNSCKKLGLDYVDLY-LIHW-PFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK 158 (323)
Q Consensus 86 ~~~~-----~~~~~i~~~ve~SL~rLg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr 158 (323)
...+ .+.+... .+-+-|+.+|+|+|++- -.|. +.... ....+.........++++.=.+-
T Consensus 212 ~~~D~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~------------~~~~~~~~~~~~~~~ik~~v~iP 278 (353)
T cd02930 212 SMLDLVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTI------------ATSVPRGAFAWATAKLKRAVDIP 278 (353)
T ss_pred cccccCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccc------------cccCCchhhHHHHHHHHHhCCCC
Confidence 5432 3433332 34445677888888762 1231 11100 00001111123345556655666
Q ss_pred EEEecCC-CHHHHHHHHHhCCC
Q psy15050 159 SIGVSNF-NSGQIKRILDCAKI 179 (323)
Q Consensus 159 ~iGvSn~-~~~~l~~l~~~~~~ 179 (323)
-++.... +++.++++++....
T Consensus 279 Vi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 279 VIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred EEEcCCCCCHHHHHHHHHCCCC
Confidence 6666554 56778888776654
No 100
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.10 E-value=3.2e+02 Score=25.29 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHcCCCEEeCC----------CCCCC-----hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCC-ChHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTA----------EVYQT-----EGDIGEAIKEKINSGDIKREELFITTKVWITHF-EPDM 94 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~-~~~~ 94 (323)
.++..++.+.+.+.|+..||.- ..+|+ -+.+.+.++..... . ++-|+.|+-.... +...
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a--~---d~pv~vKiR~G~~~~~~~ 150 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA--V---DVPVTLKIRTGWAPEHRN 150 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh--c---CCceEEEEEccccCCcch
Confidence 3666777777788999999942 23443 33444444432111 1 3446666632211 1111
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHH
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF-NSGQIKRI 173 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~l 173 (323)
.. .+-+-++..|. |.+.+|.-.... . +.. ..-|+.+.++++.=.|--||.... +.+.++++
T Consensus 151 ~~-~~a~~le~~G~---d~i~vh~rt~~~---~--------~~G---~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~ 212 (321)
T PRK10415 151 CV-EIAQLAEDCGI---QALTIHGRTRAC---L--------FNG---EAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 212 (321)
T ss_pred HH-HHHHHHHHhCC---CEEEEecCcccc---c--------cCC---CcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 22 23334666775 556778543210 0 000 123677778887777888888877 55788888
Q ss_pred HHhCCCcceEeeec
Q psy15050 174 LDCAKIKPVNLQIE 187 (323)
Q Consensus 174 ~~~~~~~~~~~q~~ 187 (323)
++..+. +.+++-
T Consensus 213 l~~~ga--dgVmiG 224 (321)
T PRK10415 213 LDYTGA--DALMIG 224 (321)
T ss_pred HhccCC--CEEEEC
Confidence 876655 444443
No 101
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.06 E-value=2.7e+02 Score=24.76 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEEEec---CC
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSIGVS---NF 165 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~iGvS---n~ 165 (323)
++.+ -+..+-+.|.++|+++|++-+....... .. .......+ .|+.++.+++. +.++...++ ..
T Consensus 19 ~~~~-~k~~i~~~L~~~Gv~~iEvg~~~~~~~~---~~-----~~~~~~~~---~~e~i~~~~~~~~~~~~~~~~~~~~~ 86 (263)
T cd07943 19 FTLE-QVRAIARALDAAGVPLIEVGHGDGLGGS---SL-----NYGFAAHT---DEEYLEAAAEALKQAKLGVLLLPGIG 86 (263)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeecCCCCCCc---cc-----ccCCCCCC---hHHHHHHHHHhccCCEEEEEecCCcc
Confidence 4544 4455556689999999999875321100 00 00001122 34555555333 346666664 22
Q ss_pred CHHHHHHHHHhCCCcceEeeecc--cCCcChHHHHHHHHhcCcEEEEe
Q psy15050 166 NSGQIKRILDCAKIKPVNLQIEV--HPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 166 ~~~~l~~l~~~~~~~~~~~q~~~--~~~~~~~~l~~~~~~~gI~via~ 211 (323)
....++.+.+. ++ ..+.+.+ |....-.+.+++++++|+.+...
T Consensus 87 ~~~~i~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 87 TVDDLKMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred CHHHHHHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 34566666653 34 3333322 22222367899999999887654
No 102
>PLN02363 phosphoribosylanthranilate isomerase
Probab=38.98 E-value=1.2e+02 Score=27.27 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec-CCCHHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS-NFNSGQ 169 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS-n~~~~~ 169 (323)
+.+.++.+. ++|.|+|-+.+...-.+ ..+ .+..+.+.+......++.+||- |-+.+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR----------------~Vs-~e~a~~I~~~l~~~~~~~VgVfv~~~~~~ 113 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKR----------------SIS-LSVAKEISQVAREGGAKPVGVFVDDDANT 113 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCC----------------cCC-HHHHHHHHHhccccCccEEEEEeCCCHHH
Confidence 444454443 58999999875432111 122 3334444444433346789985 777788
Q ss_pred HHHHHHhCCCcceEeeecc
Q psy15050 170 IKRILDCAKIKPVNLQIEV 188 (323)
Q Consensus 170 l~~l~~~~~~~~~~~q~~~ 188 (323)
+.++++..++ +++|++-
T Consensus 114 I~~~~~~~~l--d~VQLHG 130 (256)
T PLN02363 114 ILRAADSSDL--ELVQLHG 130 (256)
T ss_pred HHHHHHhcCC--CEEEECC
Confidence 8888887755 7888764
No 103
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.88 E-value=30 Score=27.63 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCcEEEEecCCC
Q psy15050 195 RKLIDFCKKHNITVTAYSPLG 215 (323)
Q Consensus 195 ~~l~~~~~~~gI~via~spl~ 215 (323)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999998776
No 104
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.59 E-value=3e+02 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=26.9
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA 52 (323)
+|+.|.+.+...|.+ ++..++++...+.||+.|+..
T Consensus 5 TlRDG~Q~~~~~~s~-------e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 5 GPRDGLQNEKTFIPT-------EDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CCCCCCcCCCCCcCH-------HHHHHHHHHHHHcCCCEEEeC
Confidence 456676655444332 777889999999999999997
No 105
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.10 E-value=2.9e+02 Score=24.52 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~iGvSn~~~~ 168 (323)
++.+ -+..+-+.|.++|+++|++-+ |.. ...-|+.++.+.+. ..++..+.+....+
T Consensus 17 ~~~~-~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~ 73 (259)
T cd07939 17 FSRE-EKLAIARALDEAGVDEIEVGI---PAM-------------------GEEEREAIRAIVALGLPARLIVWCRAVKE 73 (259)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEec---CCC-------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence 4444 455566669999999999863 211 01224556666653 34777777777778
Q ss_pred HHHHHHHhCCCcceEeeecccCCc--------C------hHHHHHHHHhcCcEEEEec
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYL--------N------QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~--------~------~~~l~~~~~~~gI~via~s 212 (323)
.++.+.+. +++...+-+..+... + -.+.+++|+++|+.+....
T Consensus 74 ~v~~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 74 DIEAALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 88887764 343222222222221 0 1367889999999875433
No 106
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=38.07 E-value=4e+02 Score=26.10 Aligned_cols=117 Identities=12% Similarity=0.016 Sum_probs=61.9
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC----ceeEEEeecccccCCCCCC
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD----YVDLYLIHWPFAIKGKDVH 128 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d----~iDl~~lH~p~~~~~~~~~ 128 (323)
-.||.|+.|-++|+...+.. ...+=++|.|-+... .--+.+..-+++.-++|.-+ .+.++.+|.|....
T Consensus 69 vVfGG~~kL~~aI~~~~~~~-~~p~~I~V~ttC~~e-iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~g----- 141 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRY-PNLRVIPIITTCSTE-TIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKG----- 141 (457)
T ss_pred eEECcHHHHHHHHHHHHHhC-CCCCEEEEECCchHH-hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcC-----
Confidence 35788888888998764432 012346776665321 11112333333322222111 36788999886421
Q ss_pred CCCccCCCCCccHHHHHHHHHHHH------HcCCccEEEecCC--CHHHHHHHHHhCCCcceE
Q psy15050 129 DTSFEGEHNNVSIEETWRGMEKCV------EKGLAKSIGVSNF--NSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~aL~~l~------~~GkIr~iGvSn~--~~~~l~~l~~~~~~~~~~ 183 (323)
........++++|-+.. .+++|--||-.+. +.+.++++++..++++.+
T Consensus 142 -------s~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 142 -------SQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred -------cHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 11233445555554332 2366777764332 446788889888875544
No 107
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=38.05 E-value=1.5e+02 Score=23.04 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 141 IEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 141 ~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
....+..|..+++.|++. .| ..+..++++......+++-.+.++......+..+|++.+|.++-.
T Consensus 11 ~~ki~~lL~la~ragkl~-~G-----~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 11 ANKALEAVEKARETGKIK-KG-----TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHHcCCEe-Ec-----HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 356788899999999863 33 477788888877777777777766444568889999999997654
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.70 E-value=98 Score=25.18 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=48.8
Q ss_pred ccEEEecCCCH--HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCChHHHHH
Q psy15050 157 AKSIGVSNFNS--GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKE 234 (323)
Q Consensus 157 Ir~iGvSn~~~--~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~~~~l~~ 234 (323)
+..+|...|+. ..+.+++..+++.... .-.+....+.+..+-++++.++.-|.+.++. .-.-+.+.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d~GfeVi~----~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h-------~~l~~~lve 85 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFEVIN----LGLFQTPEEAVRAAVEEDVDVIGVSSLDGGH-------LTLVPGLVE 85 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCceEEe----cCCcCCHHHHHHHHHhcCCCEEEEEeccchH-------HHHHHHHHH
Confidence 33567888875 5688888888773221 1122336789999999999999999998874 111244555
Q ss_pred HHHHcCC
Q psy15050 235 IADKYRK 241 (323)
Q Consensus 235 ia~~~~~ 241 (323)
.+++.|.
T Consensus 86 ~lre~G~ 92 (143)
T COG2185 86 ALREAGV 92 (143)
T ss_pred HHHHhCC
Confidence 5555554
No 109
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.56 E-value=2.7e+02 Score=24.08 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCCCEEeCC-CCCCC--hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTA-EVYQT--EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGL 108 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA-~~Yg~--E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~ 108 (323)
++..++++...++||..|+.. +..+. .+.+....+.. +...+...+. .....++.+++.. ...|.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~-----~~~~~i~~~~~~~-~~~g~ 81 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL------PNARLQALCR-----ANEEDIERAVEAA-KEAGI 81 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH------HSSEEEEEEE-----SCHHHHHHHHHHH-HHTTS
T ss_pred HHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh------cccccceeee-----ehHHHHHHHHHhh-HhccC
Confidence 778889999899999999999 33331 23344333321 2233333333 3566677777644 56888
Q ss_pred CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCC
Q psy15050 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN 166 (323)
Q Consensus 109 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~ 166 (323)
+.+.++.-=++.... .. -.......++.+.+.++.+++.|.--.+++...+
T Consensus 82 ~~i~i~~~~s~~~~~-~~------~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~ 132 (237)
T PF00682_consen 82 DIIRIFISVSDLHIR-KN------LNKSREEALERIEEAVKYAKELGYEVAFGCEDAS 132 (237)
T ss_dssp SEEEEEEETSHHHHH-HH------TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG
T ss_pred CEEEecCcccHHHHH-Hh------hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc
Confidence 888866422210000 00 0000011244556777888888998899985544
No 110
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=37.45 E-value=3e+02 Score=24.56 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEe-ecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEEEecCCCH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLI-HWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSIGVSNFNS 167 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~iGvSn~~~ 167 (323)
.+++.+.+.+++.+ .-|.++||+--. -+|... ........+.....++.+++. +. -|-+-++.+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~-----------~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~ 85 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGAD-----------RVSPEEELNRVVPVIKALRDQPDV--PISVDTYRA 85 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCH
Confidence 35566666655554 468999999321 112110 000111222344555556555 43 388999999
Q ss_pred HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecC
Q psy15050 168 GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 168 ~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~sp 213 (323)
+.++.+++.+ . ..++-+..- . ..++++.++++|..++.+.-
T Consensus 86 ~vi~~al~~G-~-~iINsis~~--~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 86 EVARAALEAG-A-DIINDVSGG--Q-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHcC-C-CEEEECCCC--C-CchhHHHHHHcCCcEEEEeC
Confidence 9999999873 3 244433322 2 56899999999999998653
No 111
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.04 E-value=3.6e+02 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=27.8
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEV 54 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~ 54 (323)
+|+.|.+.+.+.| +. ++..++++...+.||..|+....
T Consensus 7 TLRDG~Q~~~~~~-----s~--~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 7 TLRDGEQTPGVSL-----TV--EQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCCCcCCCCCCCC-----CH--HHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677777654333 33 77888999989999999997643
No 112
>PRK14017 galactonate dehydratase; Provisional
Probab=36.59 E-value=1.3e+02 Score=28.45 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecCC
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~spl 214 (323)
++.+.+|.+...+. ..|=|-++...+..+++...+ .++|+.....- .-.++.+.|+++||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56778888876665 667777888889998887654 66676655432 2368999999999999887653
No 113
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.56 E-value=3.4e+02 Score=24.91 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHcCCCEEeCCC---------CC-CC-----hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC-CChHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAE---------VY-QT-----EGDIGEAIKEKINSGDIKREELFITTKVWITH-FEPDM 94 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~---------~Y-g~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~~~ 94 (323)
.++..++.+.+.++|+..||.-- .| |+ .+.+.+.++.. .+ +-++-|+.|+.... .+...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r~----~~~~pv~vKir~g~~~~~~~ 148 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-VD----AVDIPVTVKIRIGWDDAHIN 148 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-Hh----hcCCCEEEEEEcccCCCcch
Confidence 36778888888899999998632 22 32 23444444432 11 11255777763211 11111
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCC-HHHHHHH
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN-SGQIKRI 173 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~-~~~l~~l 173 (323)
+ ..+-+.|+..|+|. +.+|...... ...-...|+.+.++++.=.+--||..... .+.+.++
T Consensus 149 ~-~~~a~~l~~~G~d~---i~vh~r~~~~--------------~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~ 210 (319)
T TIGR00737 149 A-VEAARIAEDAGAQA---VTLHGRTRAQ--------------GYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAM 210 (319)
T ss_pred H-HHHHHHHHHhCCCE---EEEEcccccc--------------cCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHH
Confidence 2 23444567778654 5567532210 00011236777777776667778877774 4678888
Q ss_pred HHhCCCcceEeee
Q psy15050 174 LDCAKIKPVNLQI 186 (323)
Q Consensus 174 ~~~~~~~~~~~q~ 186 (323)
++..+. +.+++
T Consensus 211 l~~~ga--d~Vmi 221 (319)
T TIGR00737 211 LETTGC--DGVMI 221 (319)
T ss_pred HHhhCC--CEEEE
Confidence 866655 34444
No 114
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=36.36 E-value=2.1e+02 Score=25.49 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=63.0
Q ss_pred CccccccCcCCCCchHHHHHHHHHHH-cCCCEEeCCCCCCC--hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHH
Q psy15050 18 PALGLGTWQGEPGSGDVKNAVLAAID-AGYRHIDTAEVYQT--EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDM 94 (323)
Q Consensus 18 s~lglGt~~~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~--E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~ 94 (323)
|+|-+||-..+. .+++..|++ +|-..+=.|=---+ ...-+.-+-+ .++++++.+.-... ...+.+.
T Consensus 9 SRL~lGTgky~s-----~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~-----~i~~~~~~lLPNTa-Gc~tA~E 77 (247)
T PF05690_consen 9 SRLILGTGKYPS-----PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILD-----YIDRSGYTLLPNTA-GCRTAEE 77 (247)
T ss_dssp -SEEEE-STSSS-----HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCC-----CTTCCTSEEEEE-T-T-SSHHH
T ss_pred cceEEecCCCCC-----HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHH-----HhcccCCEECCcCC-CCCCHHH
Confidence 678888887765 467777774 47666655432110 0000111111 13556666544432 2467777
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK 158 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr 158 (323)
..+..+-..+.++++.|-+=.+..+.. ...+..+++++-+.|+++|-+-
T Consensus 78 Av~~A~laRe~~~t~wIKLEVi~D~~~---------------L~PD~~etl~Aae~Lv~eGF~V 126 (247)
T PF05690_consen 78 AVRTARLAREAFGTNWIKLEVIGDDKT---------------LLPDPIETLKAAEILVKEGFVV 126 (247)
T ss_dssp HHHHHHHHHHTTS-SEEEE--BS-TTT-----------------B-HHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCC---------------cCCChhHHHHHHHHHHHCCCEE
Confidence 777778888888998887666654322 2346789999999999998763
No 115
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.04 E-value=1.9e+02 Score=27.08 Aligned_cols=66 Identities=9% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCC---cChHHHHHHHHhcCcEEEEec
Q psy15050 145 WRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPY---LNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 145 ~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gI~via~s 212 (323)
++.+.+|++..-+. ..|=|.++...+..+++...+ .++|...... ..-.++.+.|+++||.++.++
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 67788887775554 566677788888888776544 5666654432 123688999999999988665
No 116
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=35.44 E-value=3.7e+02 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCCEEeCC
Q psy15050 33 DVKNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 33 ~~~~~l~~A~~~Gi~~~DTA 52 (323)
...+..+.|.++|+..++-.
T Consensus 153 ~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 34455677888999998863
No 117
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.87 E-value=1.5e+02 Score=28.61 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC-CCceeEEEeecccccCCCCCCCCCc
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG-LDYVDLYLIHWPFAIKGKDVHDTSF 132 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~ 132 (323)
.||.|+.|-++|++..+.. ..+=++|.|-....-.. +.+..-+++.-++.- ...+.++.+|.|... |
T Consensus 62 VfGg~~~L~~~i~~~~~~~--~p~~I~V~ttc~~eiIG-dDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~-g-------- 129 (417)
T cd01966 62 ILGGGENLEEALDTLAERA--KPKVIGLLSTGLTETRG-EDIAGALKQFRAEHPELADVPVVYVSTPDFE-G-------- 129 (417)
T ss_pred EECCHHHHHHHHHHHHHhc--CCCEEEEECCCcccccc-cCHHHHHHHHHhhccccCCCeEEEecCCCCC-C--------
Confidence 4788888888888754432 33457777776432111 113333333222210 013678888887542 0
Q ss_pred cCCCCCccHHHHHHHHHH-H--------HHcCCccEEEecCC---CHHHHHHHHHhCCCcceE
Q psy15050 133 EGEHNNVSIEETWRGMEK-C--------VEKGLAKSIGVSNF---NSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 133 ~~~~~~~~~~~~~~aL~~-l--------~~~GkIr~iGvSn~---~~~~l~~l~~~~~~~~~~ 183 (323)
........++++|-+ + +..++|--||-++. +.++++++++..++++.+
T Consensus 130 ---~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 130 ---SLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred ---cHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 012233444444432 2 23566888875544 336778888888876543
No 118
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=34.50 E-value=3.7e+02 Score=24.75 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCce
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYV 111 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~i 111 (323)
++..+.++.+.+.|++.|=.--.-..+...=+++++. .+ ++.|.-=. +..++.+... . +++|. ..
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-----~~--~~~l~vDa-N~~~~~~~a~-~----~~~l~--~~ 198 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-----FP--QIPLVIDA-NESYDLQDFP-R----LKELD--RY 198 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-----CC--CCcEEEEC-CCCCCHHHHH-H----HHHHh--hC
Confidence 5666777888899999874311001222333455553 22 33333322 2334554431 1 33332 24
Q ss_pred eEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccC
Q psy15050 112 DLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHP 190 (323)
Q Consensus 112 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~ 190 (323)
++.++-.|-. .+.++.+.++++.-.+. ..|=|.++...+.++++...+ +++|.....
T Consensus 199 ~~~~iEeP~~--------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~ 256 (324)
T TIGR01928 199 QLLYIEEPFK--------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGR 256 (324)
T ss_pred CCcEEECCCC--------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcch
Confidence 6667776633 23457788887775554 678888888999998876655 566666554
Q ss_pred Cc---ChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 191 YL---NQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 191 ~~---~~~~l~~~~~~~gI~via~spl~~G 217 (323)
.- .-.++...|+++|+.++..+.+..+
T Consensus 257 ~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 257 LGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 22 2368999999999999987666554
No 119
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=34.23 E-value=39 Score=32.31 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred cccCcCCCCchHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEe---------ccCCC-CCC
Q psy15050 22 LGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITT---------KVWIT-HFE 91 (323)
Q Consensus 22 lGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~t---------K~~~~-~~~ 91 (323)
+||.....+.+.-.+-++.|++.|-..+-==+.-|+-..+-+.+- ....+-|.| |-+.. +.+
T Consensus 66 IGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il--------~~~~vpvGTVPiYqa~~~~~~~~~~~t 137 (420)
T PF01964_consen 66 IGTSSDYSDIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAIL--------ENSPVPVGTVPIYQAAIRKGGSIVDMT 137 (420)
T ss_dssp E--------HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHH--------HT-SS-EEE-HHHHHHHHTTT-GGG--
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHH--------HhCCCccccchHHHHHHHhCCChhhCC
Q ss_pred hHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q psy15050 92 PDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIK 171 (323)
Q Consensus 92 ~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~ 171 (323)
++.+.+.+++-.+ +-+|++-+|. .-+.+.++.++++|++ .|+-+..-.-+.
T Consensus 138 ~d~~~~~ie~qa~----~GVDfmtiH~-----------------------git~~~~~~~~~~~R~--~giVSRGGs~l~ 188 (420)
T PF01964_consen 138 EDDFFDVIEKQAK----DGVDFMTIHC-----------------------GITRETLERLKKSGRI--MGIVSRGGSILA 188 (420)
T ss_dssp HHHHHHHHHHHHH----HT--EEEE-T-----------------------T--GGGGGGGT--TSS--S----HHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCEEEEcc-----------------------chhHHHHHHHhhhccc--cCccccchHHHH
Q ss_pred HHHHhCCCcceEeeecccCCcCh-HHHHHHHHhcCcEEEEecCCCCCC-----CCCCCCCCCChHHHHHHHHHcCC
Q psy15050 172 RILDCAKIKPVNLQIEVHPYLNQ-RKLIDFCKKHNITVTAYSPLGAPW-----TNPDKPLLINDDVLKEIADKYRK 241 (323)
Q Consensus 172 ~l~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gI~via~spl~~G~-----~~~~~~~~l~~~~l~~ia~~~~~ 241 (323)
..+...+- =||++.. +++++.|+++++.+.--..|-.|. ...+..++....+|.+-|.+.|+
T Consensus 189 ~WM~~n~~--------ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gV 256 (420)
T PF01964_consen 189 AWMLHNGK--------ENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILGELVKRAREAGV 256 (420)
T ss_dssp HHHHHHTS----------HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCC--------cCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCC
No 120
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=34.21 E-value=2.1e+02 Score=22.27 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=44.9
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC---CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLGL---DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKC 151 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l 151 (323)
+|=-+.|+-|++........+++.+.+..+.+.- ...|++++-.+... ..+..+..+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~---------------~~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA---------------ECNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 4545666667665556777788888888876642 35799999887542 45677777777777
Q ss_pred HHc
Q psy15050 152 VEK 154 (323)
Q Consensus 152 ~~~ 154 (323)
.+.
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 655
No 121
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.90 E-value=5.7e+02 Score=27.14 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc--CCccEEEecCCCHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK--GLAKSIGVSNFNSG 168 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~--GkIr~iGvSn~~~~ 168 (323)
.-+.+++-++...........-+|+|+..+. -..+.+++|.+..++ ..+++|-++|....
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~------------------LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHM------------------LTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhh------------------CCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 3445666555544332223456788875432 123556777666666 58999999998765
Q ss_pred HHHHHHHhCCCcceEeeecccCCcCh---HHHHHHHHhcCcE
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYLNQ---RKLIDFCKKHNIT 207 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gI~ 207 (323)
.+..+...+ .+++|..+..+ .-+...|.+.||.
T Consensus 162 Ip~TIrSRC------q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 162 IPVTVLSRC------LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ccchhhhhe------EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 555555544 34555554442 2344556666654
No 122
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=33.81 E-value=1.3e+02 Score=23.42 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 139 VSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 139 ~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
.....+.+.+....+.|+|. .+..+..++++....+.+++--...|-.--.-+-..|.++||.++-.
T Consensus 10 ~~~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 10 MLEQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 34567788899999999874 45578888888877777777666665555567888999999999753
No 123
>KOG0369|consensus
Probab=33.21 E-value=3.9e+02 Score=27.75 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCce
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYV 111 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~i 111 (323)
+-+.++++.|-++|++.+ ..|..+..+- -=+ ..-|+-++..|..+ |-..--++++..+--+...+
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYseqD~~s-MHR-------qKADEaY~iGk~l~----PV~AYL~ideii~iak~~~v 107 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSEQDRLS-MHR-------QKADEAYLIGKGLP----PVGAYLAIDEIISIAKKHNV 107 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEeccchhh-hhh-------hccccceecccCCC----chhhhhhHHHHHHHHHHcCC
Confidence 667899999999999977 4675433221 111 24578889988733 22222223333322222233
Q ss_pred eEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHH------HHHHHhCCCcceEee
Q psy15050 112 DLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQI------KRILDCAKIKPVNLQ 185 (323)
Q Consensus 112 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l------~~l~~~~~~~~~~~q 185 (323)
|. +|--..+ +.|- ..+.+.+.+-=|++||=|.--.+.+ +.+.-.++++ ++.
T Consensus 108 da--vHPGYGF------------------LSEr-sdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVp--vVP 164 (1176)
T KOG0369|consen 108 DA--VHPGYGF------------------LSER-SDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVP--VVP 164 (1176)
T ss_pred Ce--ecCCccc------------------cccc-hHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCC--ccC
Confidence 43 4521111 0111 1223334444578999764332221 1122223332 122
Q ss_pred ecccCCcChHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 186 IEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
-.--|...-.+.+++|+++|..||--..+++|.
T Consensus 165 GTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 165 GTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 222333445799999999999999999998885
No 124
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=33.12 E-value=2.2e+02 Score=21.80 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC---CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLGL---DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKC 151 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l 151 (323)
+|=-+.|+-|++. ......+++.+.+..+.... ...|++++-.+... ..+..+.-+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~---------------~~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA---------------ELDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 5556778888766 56777888888888876643 35799998877542 45566666666666
Q ss_pred HHc
Q psy15050 152 VEK 154 (323)
Q Consensus 152 ~~~ 154 (323)
.+.
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 554
No 125
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=33.06 E-value=3.2e+02 Score=25.80 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~ 169 (323)
.+.+.++.-+++.|.+.|++- ..-..+-+.|-..- .-|+.+|...+
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~e----------------------------e~A~~vA~~lv~ad------~~G~~SHGv~r 51 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPE----------------------------EDARAVADVLVAAD------LRGVDSHGVGR 51 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCH----------------------------HHHHHHHHHHHHHH------hcCCcccchHH
Confidence 477889999999999999752 11122223333222 26888888887
Q ss_pred HHHHHHh---CCC----cceE-------eeecccCCcCh-------HHHHHHHHhcCcEEEE
Q psy15050 170 IKRILDC---AKI----KPVN-------LQIEVHPYLNQ-------RKLIDFCKKHNITVTA 210 (323)
Q Consensus 170 l~~l~~~---~~~----~~~~-------~q~~~~~~~~~-------~~l~~~~~~~gI~via 210 (323)
+...++. +++ .|.+ .++.=+--..+ ..+++.|+++||++++
T Consensus 52 ~p~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 52 LPGYVRRLKAGKINPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred HHHHHHHHHcCCcCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 7666543 333 2222 22222211111 5789999999999987
No 126
>PLN02444 HMP-P synthase
Probab=33.02 E-value=5.3e+02 Score=26.08 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHcCCC-EEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEE---EEecc--CCCCCChHHHHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYR-HIDTAEVYQTEGDIGEAIKEKINSGDIKREELF---ITTKV--WITHFEPDMVVQACQNSCKK 105 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~---i~tK~--~~~~~~~~~i~~~ve~SL~r 105 (323)
++-.+-++.|++.|-. ..|-+. .|+-..+-+++-+. -+++-.-|= ..-|+ ...+.+.+.+.+.+++-.+
T Consensus 237 e~EveK~~~A~~~GADTvMDLST-Ggdi~~iR~~Il~~---spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQae- 311 (642)
T PLN02444 237 EEEVYKLQWATMWGADTVMDLST-GRHIHETREWILRN---SPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAE- 311 (642)
T ss_pred HHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH-
Confidence 4445568899999966 555543 45544444444321 111111100 01111 1135677888888887776
Q ss_pred hCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEee
Q psy15050 106 LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQ 185 (323)
Q Consensus 106 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q 185 (323)
+-+|.+-||.- -..+.++.++ + |..|+-+-.-.-+...+....-
T Consensus 312 ---qGVDfmTIH~G-----------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~k------ 355 (642)
T PLN02444 312 ---QGVDYFTIHAG-----------------------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYHK------ 355 (642)
T ss_pred ---hCCCEEEEChh-----------------------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcCC------
Confidence 44677999952 1234444444 3 6688777776555444332221
Q ss_pred ecccCCcC-hHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 186 IEVHPYLN-QRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 186 ~~~~~~~~-~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
=||++. -+++++.|++++|.+ .||.|+
T Consensus 356 --ENPlYe~FD~ileI~k~YDVtl----SLGDGL 383 (642)
T PLN02444 356 --ENFAYEHWDDILDICNQYDIAL----SIGDGL 383 (642)
T ss_pred --cCchHHHHHHHHHHHHHhCeee----eccCCc
Confidence 233333 367888888888887 356555
No 127
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.96 E-value=66 Score=26.82 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHcC-CccEEEecCCCH--HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 140 SIEETWRGMEKCVEKG-LAKSIGVSNFNS--GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 140 ~~~~~~~aL~~l~~~G-kIr~iGvSn~~~--~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
...+.+++|.++++.| +|..+|..|... ..+.+++ +. .+.++.|+....-...+..+++.|+.++.-
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEEC
Confidence 4568889999988776 666666666553 3444444 43 444555544333357788888999999875
No 128
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=32.94 E-value=1.3e+02 Score=21.93 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 144 TWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
....|...++.|++ -+|+ .++.+.+.......++.--+.++.....-+..+|++++|.++-.
T Consensus 3 i~~~l~~a~~~~~l-v~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~ 64 (95)
T PF01248_consen 3 IYKLLKLARKAGRL-VKGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFV 64 (95)
T ss_dssp HHHHHHHHHHHSEE-EESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHhcCCE-EEch-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEE
Confidence 45567777777774 3444 77888888877777776666665443444778999999999754
No 129
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=32.88 E-value=3.7e+02 Score=25.96 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecC
Q psy15050 143 ETWRGMEKCVEK------GLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 143 ~~~~aL~~l~~~------GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~sp 213 (323)
+.++.|.+|++. ..--..+=|.++...+.++++.... .++|+..+-.- .-.++..+|+++||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 346667777665 4444566777788888888876654 66777665432 246899999999999998765
Q ss_pred C
Q psy15050 214 L 214 (323)
Q Consensus 214 l 214 (323)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 130
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=32.86 E-value=1.6e+02 Score=23.11 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 142 EETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 142 ~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
...+..|.-+++.|++. . +..+..++++......+++--+.++..-...+..+|+++||.++-.
T Consensus 16 ~ki~~lL~la~ragklv-~-----G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-K-----GTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888999999874 3 3477788888777777777766666443467888999999997543
No 131
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.34 E-value=3.7e+02 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=27.8
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCCCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVY 55 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Y 55 (323)
+|+.|.+.+.. .++. ++..++++...++||+.|+.....
T Consensus 5 TlRDG~Q~~~~-----~~~~--~~k~~i~~~L~~~Gv~~iEvg~~~ 43 (268)
T cd07940 5 TLRDGEQTPGV-----SLTP--EEKLEIARQLDELGVDVIEAGFPA 43 (268)
T ss_pred CCCccccCCCC-----CCCH--HHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45666665432 3333 788899999999999999987543
No 132
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=31.93 E-value=4.1e+02 Score=24.40 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCC-ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQ-TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD 109 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d 109 (323)
.++..++++.+.+.|++.|.-...-. -..-+-+.++.. .+. ..-.++.|+|-... +.+. -..|...|++
T Consensus 51 ~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i-~~~-~~~~~i~itTNG~l-------l~~~-~~~L~~agl~ 120 (331)
T PRK00164 51 LEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAAL-AAL-PGIRDLALTTNGYL-------LARR-AAALKDAGLD 120 (331)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHH-Hhc-CCCceEEEEcCchh-------HHHH-HHHHHHcCCC
Confidence 46788889888899998876542111 011123333321 111 01235777776411 2222 2345555665
Q ss_pred ceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q psy15050 110 YVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL 156 (323)
Q Consensus 110 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk 156 (323)
.|- +-||..++..-..+ .....++.++++++.+++.|.
T Consensus 121 ~i~-ISlds~~~e~~~~i--------~~~~~~~~vl~~i~~~~~~g~ 158 (331)
T PRK00164 121 RVN-VSLDSLDPERFKAI--------TGRDRLDQVLAGIDAALAAGL 158 (331)
T ss_pred EEE-EEeccCCHHHhccC--------CCCCCHHHHHHHHHHHHHCCC
Confidence 543 33444332100000 012356788888888888775
No 133
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=31.59 E-value=3.2e+02 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHH
Q psy15050 145 WRGMEKCVEKGLAKSIGVSNFNSGQI 170 (323)
Q Consensus 145 ~~aL~~l~~~GkIr~iGvSn~~~~~l 170 (323)
.+.+.+......++.+|++++....+
T Consensus 88 ~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 88 CAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHHhhcCCcEEEEEecCChhhHHH
Confidence 34444433456899999998865444
No 134
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.36 E-value=4.4e+02 Score=24.60 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC---------------------hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT---------------------EGDIGEAIKEKINSGDIKREELFITTKVWITHF 90 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~ 90 (323)
+...++.+.+-+.|+.|+=|.-.-.+ -.+| +.+.+ ....|+|+|=. .
T Consensus 77 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL-~~va~-------~gkPvilstG~----~ 144 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLI-RYVAK-------TGKPIIMSTGI----A 144 (327)
T ss_pred HHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHH-HHHHh-------cCCcEEEECCC----C
Confidence 55667888888899998876543211 1111 12211 23446655543 3
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~ 169 (323)
+.+.+..+++...+ -|. -|+.++|....+. .....--+.+|..|++.=. .-||+|+|+...
T Consensus 145 t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP--------------~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~ 205 (327)
T TIGR03586 145 TLEEIQEAVEACRE-AGC--KDLVLLKCTSSYP--------------APLEDANLRTIPDLAERFN-VPVGLSDHTLGI 205 (327)
T ss_pred CHHHHHHHHHHHHH-CCC--CcEEEEecCCCCC--------------CCcccCCHHHHHHHHHHhC-CCEEeeCCCCch
Confidence 67778888887653 343 4799999875541 1111122455555555433 469999998754
No 135
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.01 E-value=4.5e+02 Score=24.58 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCC----------------C-----hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQ----------------T-----EGDIGEAIKEKINSGDIKREELFITTKVWITH 89 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg----------------~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~ 89 (323)
.+....+.+.+-+.|+.+|=|.-.-. | -.+| +.+.+ ....++|+|=.
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL-~~~A~-------~gkPvilStGm---- 142 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLL-KKIAR-------FGKPVILSTGM---- 142 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHH-HHHHh-------cCCcEEEECCC----
Confidence 36777888888899999887653311 1 1222 12221 23456666654
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~ 169 (323)
.+.+.+..+++...+ -|.+.-|+.++|+...+. .....--++++..|++.=. .-||+|+|+...
T Consensus 143 atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP--------------~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 143 ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYP--------------APFEDVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCC--------------CCcccCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 377889988888754 353212589999875531 1111122445555554322 469999998754
No 136
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=30.98 E-value=3.9e+02 Score=23.95 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC---hH--HHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHh
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT---EG--DIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKL 106 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~---E~--~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rL 106 (323)
+...+.++..-+.|..+|..++.-+. +. .++..|++. .+ .+-=..++.. +.+...+...+... ..+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~---~g-~~~i~Hlt~r----~~n~~~l~~~L~~~-~~~ 85 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE---TG-IPTVPHLTCI----GATREEIREILREY-REL 85 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh---cC-CCeeEEeeec----CCCHHHHHHHHHHH-HHC
Confidence 33445566666788999999887652 22 333444421 00 1111222222 35677777777754 778
Q ss_pred CCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCH---------HHHHHHHHh-
Q psy15050 107 GLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNS---------GQIKRILDC- 176 (323)
Q Consensus 107 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~---------~~l~~l~~~- 176 (323)
|++ +++.|-.-.+..++ + .. ...+..+.+-++.+++..---.||+..++. .+++.+.+.
T Consensus 86 Gi~--nvL~l~GD~~~~~~---~-~~-----~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~ 154 (272)
T TIGR00676 86 GIR--HILALRGDPPKGEG---T-PT-----PGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKV 154 (272)
T ss_pred CCC--EEEEeCCCCCCCCC---C-CC-----CCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 865 34445421111010 0 00 111223444444444432235788887542 234444332
Q ss_pred -CCCcceEeeecccCCcChHHHHHHHHhcCcEE
Q psy15050 177 -AKIKPVNLQIEVHPYLNQRKLIDFCKKHNITV 208 (323)
Q Consensus 177 -~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~v 208 (323)
++.++.+.|.-|+. ..-.+.++.|++.||.+
T Consensus 155 ~aGA~f~iTQ~~fd~-~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 155 DAGADYAITQLFFDN-DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred HcCCCeEeeccccCH-HHHHHHHHHHHHcCCCC
Confidence 34577888877664 22246788899998765
No 137
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=30.96 E-value=4.1e+02 Score=24.11 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCCC-C--hHHH--HHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC
Q psy15050 33 DVKNAVLAAIDAGYRHIDTAEVYQ-T--EGDI--GEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG 107 (323)
Q Consensus 33 ~~~~~l~~A~~~Gi~~~DTA~~Yg-~--E~~l--G~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg 107 (323)
...+.++.-.+.+..|+..+..=| + +..+ ...|++ +-.+-++.-+...+.+...+...+... ..+|
T Consensus 17 ~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~--------~~g~~~i~Hltcr~~~~~~l~~~L~~~-~~~G 87 (281)
T TIGR00677 17 NLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN--------VVGVETCMHLTCTNMPIEMIDDALERA-YSNG 87 (281)
T ss_pred HHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH--------hcCCCeeEEeccCCCCHHHHHHHHHHH-HHCC
Confidence 345666666788899999876553 2 3333 333332 102222222222344555566655555 6778
Q ss_pred CCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEEEecCCCH---------HHHHHHHHh-
Q psy15050 108 LDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSIGVSNFNS---------GQIKRILDC- 176 (323)
Q Consensus 108 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~iGvSn~~~---------~~l~~l~~~- 176 (323)
++ +++.|-.-.+..++.. + .....+..+.+.++.+++. |..-.||+..++. .++..+.+.
T Consensus 88 i~--niLal~GD~p~~~~~~---~----~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki 158 (281)
T TIGR00677 88 IQ--NILALRGDPPHIGDDW---T----EVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKV 158 (281)
T ss_pred CC--EEEEECCCCCCCCCCC---C----CCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHH
Confidence 66 4455543211111100 0 0011223345555555554 4446899998852 134455443
Q ss_pred -CCCcceEeeecccCCcChHHHHHHHHhcCcEE
Q psy15050 177 -AKIKPVNLQIEVHPYLNQRKLIDFCKKHNITV 208 (323)
Q Consensus 177 -~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~v 208 (323)
++.++.+.|.-|.+ ..-.+.++.|++.||.+
T Consensus 159 ~aGA~f~iTQ~~Fd~-~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 159 DAGADFIITQLFYDV-DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred HcCCCEeeccceecH-HHHHHHHHHHHHcCCCC
Confidence 56678888887764 11247788899987654
No 138
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=30.63 E-value=4.8e+02 Score=29.22 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=43.6
Q ss_pred EEecCCCHHHHHHHHHhCCCcceEeeecccCCc-ChHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 160 IGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL-NQRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 160 iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~-~~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
|=|-++.++.++.+++.+.-++.+|-++.-... .-.++++.|+++|..++++.--..|.
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~ 493 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQ 493 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 777788889999999987666777666543222 12479999999999999986544554
No 139
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.45 E-value=1e+02 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=36.4
Q ss_pred cCCCHHHHHHHHHhCCCcceEeeecccCC---cChHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 163 SNFNSGQIKRILDCAKIKPVNLQIEVHPY---LNQRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 163 Sn~~~~~l~~l~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gI~via~spl~~G 217 (323)
|.++...+.++++...+ +++|+..... ..-..+.+.|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45677888888886655 5666654432 1236899999999999999986 544
No 140
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.22 E-value=3.9e+02 Score=23.63 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCcceEeeeccc-CCcChHHHHHHHHhcCcEE
Q psy15050 145 WRGMEKCVEKGLAKSIGVSNF-NSGQIKRILDCAKIKPVNLQIEVH-PYLNQRKLIDFCKKHNITV 208 (323)
Q Consensus 145 ~~aL~~l~~~GkIr~iGvSn~-~~~~l~~l~~~~~~~~~~~q~~~~-~~~~~~~l~~~~~~~gI~v 208 (323)
|+.+.++++.-.+.-|..... +.+.+.++++..+++-++.-.-++ .-..-.++.++|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 444555555555666666654 447888888776554333222222 1222468899999999864
No 141
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.11 E-value=3.7e+02 Score=23.31 Aligned_cols=93 Identities=9% Similarity=0.102 Sum_probs=46.7
Q ss_pred cccccCcCCCCchHHHHHHHHHHHc-----CCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCC-------
Q psy15050 20 LGLGTWQGEPGSGDVKNAVLAAIDA-----GYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWI------- 87 (323)
Q Consensus 20 lglGt~~~~~~~~~~~~~l~~A~~~-----Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~------- 87 (323)
.|-|+...+.++++..+.++.+++. |+|----+-.-.++..+...++.. + .|.-+||=++...
T Consensus 62 ~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l-~----~~gl~FvDS~T~~~s~a~~~ 136 (213)
T PF04748_consen 62 PGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL-K----ERGLFFVDSRTTPRSVAPQV 136 (213)
T ss_dssp --TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH-H----HTT-EEEE-S--TT-SHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH-H----HcCCEEEeCCCCcccHHHHH
Confidence 3444444444456677777777765 333211111112355555555442 1 3444555333311
Q ss_pred ----------------CCCChHHHHHHHHHHHHHhCCCceeEEEee
Q psy15050 88 ----------------THFEPDMVVQACQNSCKKLGLDYVDLYLIH 117 (323)
Q Consensus 88 ----------------~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH 117 (323)
+..+.+.|++++++..+.-+..--=+..-|
T Consensus 137 A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 137 AKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp HHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 235788899999999988877766667667
No 142
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.93 E-value=5.5e+02 Score=25.55 Aligned_cols=109 Identities=10% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccC
Q psy15050 55 YQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEG 134 (323)
Q Consensus 55 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 134 (323)
+|+++.|-+++++..+.. ..+-++|.|-+ ..+-|-..++...++++.+ +.++.++.|....
T Consensus 67 ~G~~ekL~~aI~~~~~~~--~P~~I~V~sTC-----~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~----------- 127 (519)
T PRK02910 67 RGTAELLKDTLRRADERF--QPDLIVVGPSC-----TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRV----------- 127 (519)
T ss_pred CChHHHHHHHHHHHHHhc--CCCEEEEeCCc-----HHHHhccCHHHHHHHhCCC-CCEEEEecCCccc-----------
Confidence 466777777887654332 22335666654 3444555566666666653 6788989875421
Q ss_pred CCCCccHHHHHHHHHH-HH-----------HcCCccEEEecCC------CHHHHHHHHHhCCCcceE
Q psy15050 135 EHNNVSIEETWRGMEK-CV-----------EKGLAKSIGVSNF------NSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 135 ~~~~~~~~~~~~aL~~-l~-----------~~GkIr~iGvSn~------~~~~l~~l~~~~~~~~~~ 183 (323)
........++.+|-+ +. +.++|--||.++. +..++.++++..++++..
T Consensus 128 -~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 128 -KENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred -ccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 011223333333322 11 2356888887652 346788889888875433
No 143
>PRK06683 hypothetical protein; Provisional
Probab=29.93 E-value=1.5e+02 Score=21.51 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
++++++.|++- +| ..+..++++....+.+++--+... ....++...|++.+|.++-+
T Consensus 3 ~~~~~~agk~v-~G-----~~~v~kaik~gkaklViiA~Da~~-~~~~~i~~~~~~~~Vpv~~~ 59 (82)
T PRK06683 3 YQKVSNAENVV-VG-----HKRTLEAIKNGIVKEVVIAEDADM-RLTHVIIRTALQHNIPITKV 59 (82)
T ss_pred hHHHHhCCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHhcCCCEEEE
Confidence 45666777652 23 366667766666655554433332 12357888899999999766
No 144
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.55 E-value=3.4e+02 Score=22.77 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccE-EEecCCCHHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKS-IGVSNFNSGQ 169 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~-iGvSn~~~~~ 169 (323)
++..+.+.++. +.+.|.|+|-+-+...+... +. ....+.++++++...+.- +++-.++...
T Consensus 9 ~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~---------------~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~ 70 (210)
T TIGR01163 9 DFARLGEEVKA-VEEAGADWIHVDVMDGHFVP---------------NL--TFGPPVLEALRKYTDLPIDVHLMVENPDR 70 (210)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC---------------Cc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHH
Confidence 44555555544 44678888777543333210 11 133455555554432222 6677777655
Q ss_pred HHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEE
Q psy15050 170 IKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITV 208 (323)
Q Consensus 170 l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~v 208 (323)
..+.+...+. +.+|+...........++.+++.|+.+
T Consensus 71 ~~~~~~~~ga--dgv~vh~~~~~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 71 YIEDFAEAGA--DIITVHPEASEHIHRLLQLIKDLGAKA 107 (210)
T ss_pred HHHHHHHcCC--CEEEEccCCchhHHHHHHHHHHcCCcE
Confidence 4444444444 455554433222346667777777665
No 145
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=29.50 E-value=3.7e+02 Score=26.28 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHhHhhcCCCC-CCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC--ceeEEEeecccccCCCCCCC
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIK-REELFITTKVWITHFEPDMVVQACQNSCKKLGLD--YVDLYLIHWPFAIKGKDVHD 129 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~-R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d--~iDl~~lH~p~~~~~~~~~~ 129 (323)
-.||.|+.|-++|++..+.. + .+-++|.|-... +-+-..++...+++... -+.++.+|.|... |.
T Consensus 106 ~VfGg~~kL~~aI~~~~~~~--~~p~~I~V~tTC~~-----elIGDDi~~v~~~~~~~~~~~~vi~v~tpgf~-g~---- 173 (461)
T TIGR01860 106 VVFGGEKQLEKSIHEAFDEF--PDIKRMIVYTTCPT-----ALIGDDIKAVAKKVQKELPDVDIFTVECPGFA-GV---- 173 (461)
T ss_pred eeeCcHHHHHHHHHHHHHhC--CCCCEEEEEccCch-----hhhcCCHHHHHHHHHHhcCCCcEEEEeCCCcC-Cc----
Confidence 35778888889998765442 3 345788775532 22222233333333322 2578999988542 10
Q ss_pred CCccCCCCCccHHHHHHHH-HHH--------HHcCCccEEEecCC--CHHHHHHHHHhCCCcce
Q psy15050 130 TSFEGEHNNVSIEETWRGM-EKC--------VEKGLAKSIGVSNF--NSGQIKRILDCAKIKPV 182 (323)
Q Consensus 130 ~~~~~~~~~~~~~~~~~aL-~~l--------~~~GkIr~iGvSn~--~~~~l~~l~~~~~~~~~ 182 (323)
........+.+++ +++ +..+.|--||-.++ +.+++.++++..++++.
T Consensus 174 ------s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~ 231 (461)
T TIGR01860 174 ------SQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQVI 231 (461)
T ss_pred ------ccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcEE
Confidence 0011122222222 211 23577888884443 34678899998887654
No 146
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=29.02 E-value=4.7e+02 Score=24.26 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCC---CCChHHHHHHHHHHHHHhCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWIT---HFEPDMVVQACQNSCKKLGL 108 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~---~~~~~~i~~~ve~SL~rLg~ 108 (323)
+.-+++|+.+-+.|| .+|.|.. +++..=.++.- . +.-+|+|..... ++.+.--.++++...++=|+
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~--s~kt~~Dvl~~-------s-~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL--SDKTFWDVLDL-------S-KAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc--CCccHHHHHhc-------c-CCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 566899999999999 8999875 56665566652 2 344555555322 22333344555555555554
Q ss_pred CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC
Q psy15050 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF 165 (323)
Q Consensus 109 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~ 165 (323)
|.+.++-..... +. ....++++..+.++.+++.+=+++||+.+-
T Consensus 218 --Igv~~~~~fl~~-~~----------~~~atldd~v~hI~h~v~~~G~dhVglGsD 261 (313)
T COG2355 218 --IGVNFIPAFLRP-GG----------AARATLDDLVRHIDHFVELVGIDHVGLGSD 261 (313)
T ss_pred --EEEEeehhhccC-CC----------CCCCCHHHHHHHHHHHHHhcCcceeEeccc
Confidence 555544322110 00 124678999999999999999999999653
No 147
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.95 E-value=3.2e+02 Score=22.24 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=67.4
Q ss_pred hHHHHHHHHHH-HcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCc
Q psy15050 32 GDVKNAVLAAI-DAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDY 110 (323)
Q Consensus 32 ~~~~~~l~~A~-~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~ 110 (323)
+.-.+++.+|+ +.|+..+.+.-.-.-|+.+-.|+.+ . -++++.+-. ..........+-+.|+..|.+.
T Consensus 26 d~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~-------d-v~vIgvSsl---~g~h~~l~~~lve~lre~G~~~ 94 (143)
T COG2185 26 DRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE-------D-VDVIGVSSL---DGGHLTLVPGLVEALREAGVED 94 (143)
T ss_pred ccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc-------C-CCEEEEEec---cchHHHHHHHHHHHHHHhCCcc
Confidence 33457888888 6788888776554448888888764 2 344444443 2234567788889999999984
Q ss_pred eeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q psy15050 111 VDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175 (323)
Q Consensus 111 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~ 175 (323)
| +.+-.. ..+.++ +.+|++.|--+.++-.+--.+.+..++.
T Consensus 95 i--~v~~GG------------------vip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 95 I--LVVVGG------------------VIPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred e--EEeecC------------------ccCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 4 422221 111222 6678888888888775554444544443
No 148
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=28.92 E-value=5.1e+02 Score=25.30 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC-----ceeEEEeecccccCCCCC
Q psy15050 53 EVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD-----YVDLYLIHWPFAIKGKDV 127 (323)
Q Consensus 53 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d-----~iDl~~lH~p~~~~~~~~ 127 (323)
-.||.++.|-++|++..+.. ..+=++|.|-.-. +-|-..++...++++-+ .+.++.++.|... |
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~--~P~~I~V~ttC~~-----eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~-g--- 140 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA--KPKIIGLCTTGLT-----ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFK-G--- 140 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh--CCCEEEEeCcchH-----hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCC-C---
Confidence 35788888888888764432 2345666665422 22222233333333322 3578888887542 1
Q ss_pred CCCCccCCCCCccHHHHHHHHHH-HH--------HcCCccEEEecCC---CHHHHHHHHHhCCCcce
Q psy15050 128 HDTSFEGEHNNVSIEETWRGMEK-CV--------EKGLAKSIGVSNF---NSGQIKRILDCAKIKPV 182 (323)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~aL~~-l~--------~~GkIr~iGvSn~---~~~~l~~l~~~~~~~~~ 182 (323)
........++++|.+ +. +.++|--||-+++ +.+++.++++..++++.
T Consensus 141 --------~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 141 --------ALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred --------cHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 001223444444433 22 3456888875443 45778888888887653
No 149
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.92 E-value=2.6e+02 Score=24.94 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHcC-CccEEEecCCCH------HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEE
Q psy15050 140 SIEETWRGMEKCVEKG-LAKSIGVSNFNS------GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVT 209 (323)
Q Consensus 140 ~~~~~~~aL~~l~~~G-kIr~iGvSn~~~------~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~vi 209 (323)
.....++.++++++.. .+.-+..+-+++ +..-+.+..+++ ..+-++.-+.....++++.|+++|+..+
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGv--dgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGV--DGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCC--CEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 3456666677776542 233233333333 333333333443 2222333333334577778888887744
No 150
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.74 E-value=4.3e+02 Score=25.66 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCCChHHHHHHHHhHhhcCCCCC-CcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCc
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKR-EELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSF 132 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R-~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 132 (323)
.||.++.|-++|++..+.. ++ +-++|.|-.... .--+.+..-+++.-++++ +.++.+|.|... |.
T Consensus 98 V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~-g~------- 163 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF--PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFA-GV------- 163 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC--CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCcc-CC-------
Confidence 4788888888988765543 33 557777765321 111223333333333343 688999987542 10
Q ss_pred cCCCCCccHHHHHHH-HHHHH--------HcCCccEEEecCCC--HHHHHHHHHhCCCcce
Q psy15050 133 EGEHNNVSIEETWRG-MEKCV--------EKGLAKSIGVSNFN--SGQIKRILDCAKIKPV 182 (323)
Q Consensus 133 ~~~~~~~~~~~~~~a-L~~l~--------~~GkIr~iGvSn~~--~~~l~~l~~~~~~~~~ 182 (323)
........+.++ ++.+. +.++|--||-.++. .+++.++++..++++.
T Consensus 164 ---~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 164 ---SQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred ---ccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 001223334443 33343 24678888855543 3578899998887554
No 151
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.59 E-value=66 Score=24.52 Aligned_cols=64 Identities=19% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEeCCCCCC--ChHHHHHHHHhHhhcCCCCCCcEEEEeccCC-C-----------------CCChHH
Q psy15050 35 KNAVLAAIDAGYRHIDTAEVYQ--TEGDIGEAIKEKINSGDIKREELFITTKVWI-T-----------------HFEPDM 94 (323)
Q Consensus 35 ~~~l~~A~~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~-~-----------------~~~~~~ 94 (323)
..+---+++.|.-|+-|-..|. +|.++---|-+ ..++++|++|+.+ . +-.-..
T Consensus 23 YsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 23 YSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred HHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 3444556799999999999995 56555433332 3457999999832 1 112236
Q ss_pred HHHHHHHHHHH
Q psy15050 95 VVQACQNSCKK 105 (323)
Q Consensus 95 i~~~ve~SL~r 105 (323)
++.++|.-|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 88888888743
No 152
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=28.55 E-value=6.3e+02 Score=25.51 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHcCCC-EEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEE---EEecc--CCCCCChHHHHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYR-HIDTAEVYQTEGDIGEAIKEKINSGDIKREELF---ITTKV--WITHFEPDMVVQACQNSCKK 105 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~---i~tK~--~~~~~~~~~i~~~ve~SL~r 105 (323)
++-.+-+..|++.|-. ..|-+. .|+-..+-+++-+. -+++-.-|= ..-|+ ...+.+.+.+...+++-.+
T Consensus 232 eeEveK~~~A~~~GADtvMDLST-Ggdi~~~R~~Il~~---spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAe- 306 (607)
T PRK09284 232 EEEVEKMVWATRWGADTVMDLST-GKNIHETREWILRN---SPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAE- 306 (607)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC-CCCHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH-
Confidence 4444568889999966 456554 35544444444320 111111110 01111 1125677888888887776
Q ss_pred hCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEee
Q psy15050 106 LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQ 185 (323)
Q Consensus 106 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q 185 (323)
+-+|.+-||.- -.++.++.++ + |..|+-+-.-.-+...+....-
T Consensus 307 ---qGVDf~TIHaG-----------------------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~k------ 350 (607)
T PRK09284 307 ---QGVDYFTIHAG-----------------------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHHK------ 350 (607)
T ss_pred ---hCCCEEEEChh-----------------------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcCC------
Confidence 44677999952 1234444444 3 6788877776665554432221
Q ss_pred ecccCCcC-hHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 186 IEVHPYLN-QRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 186 ~~~~~~~~-~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
=|++.. -+++++.|++++|.+ .||.|+
T Consensus 351 --ENplYe~FD~ileI~k~YDVtl----SLGDGL 378 (607)
T PRK09284 351 --ENFLYTHFEEICEIMAAYDVSF----SLGDGL 378 (607)
T ss_pred --cCcHHHHHHHHHHHHHHhCeee----eccCCc
Confidence 133333 367888888888887 356665
No 153
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=28.20 E-value=3.1e+02 Score=25.83 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHH-cC---CccEEEecCC--CHHHHHHHHHhC-CCcceEeeecccCCcC-------h---HHHHHHHH
Q psy15050 140 SIEETWRGMEKCVE-KG---LAKSIGVSNF--NSGQIKRILDCA-KIKPVNLQIEVHPYLN-------Q---RKLIDFCK 202 (323)
Q Consensus 140 ~~~~~~~aL~~l~~-~G---kIr~iGvSn~--~~~~l~~l~~~~-~~~~~~~q~~~~~~~~-------~---~~l~~~~~ 202 (323)
+++++++++.++.+ .| .|+++=+... +.+++.++.+.. ++++.++-++||++.. + ....++.+
T Consensus 240 ~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 240 NIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHH
Confidence 46788888876654 33 2334434333 345555554433 2245666778887542 1 24566778
Q ss_pred hcCcEEEEecCCCCC
Q psy15050 203 KHNITVTAYSPLGAP 217 (323)
Q Consensus 203 ~~gI~via~spl~~G 217 (323)
++|+.+......|.-
T Consensus 320 ~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 320 SYGFTVTIRKSRGDD 334 (355)
T ss_pred HCCCeEEEeCCCCcc
Confidence 889999988777653
No 154
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.05 E-value=5.7e+02 Score=25.19 Aligned_cols=108 Identities=8% Similarity=0.080 Sum_probs=61.0
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEecCC----CHHHHHHHHH----hCCCcce-EeeecccCCcChHHHHHHHHhcCcEE
Q psy15050 138 NVSIEETWRGMEKCVEKGLAKSIGVSNF----NSGQIKRILD----CAKIKPV-NLQIEVHPYLNQRKLIDFCKKHNITV 208 (323)
Q Consensus 138 ~~~~~~~~~aL~~l~~~GkIr~iGvSn~----~~~~l~~l~~----~~~~~~~-~~q~~~~~~~~~~~l~~~~~~~gI~v 208 (323)
..+.+.+++.++.++++.-|+.+-+++- +...+.++++ ....++. ..+...+....+.++++..++.|+.-
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 4567889999999988766888877643 3344444333 2112221 12333344444678999999999877
Q ss_pred EEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHHhcCCe
Q psy15050 209 TAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVVLRYLVFLMV 256 (323)
Q Consensus 209 ia~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~al~w~l~~~~ 256 (323)
+..+.-. ..++.++.+-+.+...-..-+++.+.+.|+
T Consensus 301 v~iGiES-----------~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi 337 (497)
T TIGR02026 301 ISLGTEA-----------AAQATLDHFRKGTTTSTNKEAIRLLRQHNI 337 (497)
T ss_pred EEEcccc-----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 7664332 223444444333222222335666666664
No 155
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.97 E-value=5.4e+02 Score=24.54 Aligned_cols=145 Identities=10% Similarity=0.042 Sum_probs=79.7
Q ss_pred ChHHHHHHHHhHhhc--CCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccC
Q psy15050 57 TEGDIGEAIKEKINS--GDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEG 134 (323)
Q Consensus 57 ~E~~lG~al~~~~~~--~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 134 (323)
|-..+-++++-.-.. .++....+.|+|=.- - ..|++-.++ .+++ ==.+-||.|+...-..+.|..
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~Gi----v-p~I~~la~~---~~~v--~LAiSLHA~~~e~R~~lmPin--- 249 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVGL----V-KGIRRLANE---RLPI--NLAISLHAPDDALRSELMPVN--- 249 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeecc----h-hHHHHHHhc---ccCc--eEEEEeCCCCHHHHHHhcCcc---
Confidence 334455566543221 123445688887641 1 123332222 1121 113678998764311122211
Q ss_pred CCCCccHHHHHHHHHHHHHcCCccEEEe-----c--CCCHHHHHHHHHhCC-C------cceEeeecccCCcC-------
Q psy15050 135 EHNNVSIEETWRGMEKCVEKGLAKSIGV-----S--NFNSGQIKRILDCAK-I------KPVNLQIEVHPYLN------- 193 (323)
Q Consensus 135 ~~~~~~~~~~~~aL~~l~~~GkIr~iGv-----S--n~~~~~l~~l~~~~~-~------~~~~~q~~~~~~~~------- 193 (323)
..-++++.++++.+..++.. |.|-+ . |-+.+++.++.+..+ . +..+|-++||+...
T Consensus 250 --~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps 326 (371)
T PRK14461 250 --RRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSE 326 (371)
T ss_pred --cCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCC
Confidence 13467888888888865432 23322 2 555666666655443 2 46788899998543
Q ss_pred h---HHHHHHHHhcCcEEEEecCCCCC
Q psy15050 194 Q---RKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 194 ~---~~l~~~~~~~gI~via~spl~~G 217 (323)
. ....+.++++||.+.-....|.-
T Consensus 327 ~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 327 RERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred HHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 1 35667788999999998877653
No 156
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.91 E-value=2.3e+02 Score=21.69 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 141 IEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 141 ~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
..+....|.-+++.|++- ....+..+++.......+++--+... ....++..+|+..+|.++.|
T Consensus 10 ~~~i~~~Lgla~raGKlv------~G~~~vlkalk~gkaklViiA~D~~~-~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 10 QESINSKLQLVMKSGKYT------LGTKSTLKALRNGKAKLVIISNNCPP-IRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred HhhHHHHHHHHHHhCCee------ecHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHhhcCCCEEEe
Confidence 456677788888999983 34467777777766655554443332 22467888999999999765
No 157
>KOG1576|consensus
Probab=27.81 E-value=2e+02 Score=26.22 Aligned_cols=134 Identities=16% Similarity=0.319 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHH-cCCCEEeCCCCC----C-C-hHHHHHHHHh---HhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHH
Q psy15050 32 GDVKNAVLAAID-AGYRHIDTAEVY----Q-T-EGDIGEAIKE---KINSGDIKREELFITTKVWITHFEPDMVVQACQN 101 (323)
Q Consensus 32 ~~~~~~l~~A~~-~Gi~~~DTA~~Y----g-~-E~~lG~al~~---~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~ 101 (323)
+.+++.|++.++ .+.+++|.-... + | ...+-++|.. +-.++. .| | ++.+.+.-+-+.+..
T Consensus 120 dkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk-~R---f----iGitgypldvl~~~a-- 189 (342)
T KOG1576|consen 120 DKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGK-IR---F----IGITGYPLDVLTECA-- 189 (342)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCc-ee---E----eeecccchHHHHHHH--
Confidence 677888888884 588998874432 2 2 3345555543 222221 11 1 233344555454444
Q ss_pred HHHHhCCCceeEEE--eecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCC
Q psy15050 102 SCKKLGLDYVDLYL--IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKI 179 (323)
Q Consensus 102 SL~rLg~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~ 179 (323)
+-+...+|.++ .|. .......++.|+.++. +.+||.|-++-.+--+-+...
T Consensus 190 ---e~~~G~~dvvlsY~ry-------------------~l~d~tLl~~~~~~~s----k~vgVi~AsalsmgLLt~~gp- 242 (342)
T KOG1576|consen 190 ---ERGKGRLDVVLSYCRY-------------------TLNDNTLLRYLKRLKS----KGVGVINASALSMGLLTNQGP- 242 (342)
T ss_pred ---hcCCCceeeehhhhhh-------------------ccccHHHHHHHHHHHh----cCceEEehhhHHHHHhhcCCC-
Confidence 55677899887 442 1233456777777775 457898887655444433222
Q ss_pred cceEeeecccCCcCh-----HHHHHHHHhcCcEE
Q psy15050 180 KPVNLQIEVHPYLNQ-----RKLIDFCKKHNITV 208 (323)
Q Consensus 180 ~~~~~q~~~~~~~~~-----~~l~~~~~~~gI~v 208 (323)
-++||..++ ....++|+++|+.+
T Consensus 243 ------~~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 243 ------PPWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 146776664 46788999999876
No 158
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.75 E-value=5.5e+02 Score=24.63 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCccEEEecCC------CHHHHHHHHHhCCCcceE
Q psy15050 155 GLAKSIGVSNF------NSGQIKRILDCAKIKPVN 183 (323)
Q Consensus 155 GkIr~iGvSn~------~~~~l~~l~~~~~~~~~~ 183 (323)
.+|--||.++. +.+.+.++++..++++..
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 56888888753 346788888888875543
No 159
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.66 E-value=5.2e+02 Score=24.31 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKG-LAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~G-kIr~iGvSn~~~~ 168 (323)
++.+ -+..+-+.|.++|+++|++- +|.. .+.-++.++.+.+.+ ..+..+++....+
T Consensus 20 ~s~~-~k~~ia~~L~~~Gv~~IEvG---~p~~-------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~ 76 (365)
T TIGR02660 20 FTAA-EKLAIARALDEAGVDELEVG---IPAM-------------------GEEERAVIRAIVALGLPARLMAWCRARDA 76 (365)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEe---CCCC-------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHH
Confidence 4444 34456666999999999985 2311 122355666666653 3677777777778
Q ss_pred HHHHHHHhCCCcceEeeecccCCcC--------h------HHHHHHHHhcCcEEEE
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYLN--------Q------RKLIDFCKKHNITVTA 210 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gI~via 210 (323)
.++.+.+. +++...+-+..+.... + .+.+++++++|+.+..
T Consensus 77 di~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 77 DIEAAARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HHHHHHcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 88887764 3322222222222111 1 3678899999988653
No 160
>PF14502 HTH_41: Helix-turn-helix domain
Probab=27.49 E-value=1e+02 Score=20.06 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCH--HHHHHHHHhcCCeEEec
Q psy15050 230 DVLKEIADKYRKSP--AQVVLRYLVFLMVCRLS 260 (323)
Q Consensus 230 ~~l~~ia~~~~~s~--aq~al~w~l~~~~v~i~ 260 (323)
+.+.++++++++|. .|-||+++-..+.+.+.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEEee
Confidence 46788999998874 78899999998877654
No 161
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=27.30 E-value=3e+02 Score=21.41 Aligned_cols=62 Identities=6% Similarity=-0.011 Sum_probs=43.2
Q ss_pred CCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC------ceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHH
Q psy15050 76 REELFITTKVWITHFEPDMVVQACQNSCKKLGLD------YVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGME 149 (323)
Q Consensus 76 R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~ 149 (323)
|=-+.|+-|++........+++.+.++.+....+ -.|++++-.+... ..+..+.-+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~---------------~~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE---------------EINFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc---------------cCCHHHHHHHHH
Confidence 5668888887655567788999999998887542 5789999877542 345556666665
Q ss_pred HHH
Q psy15050 150 KCV 152 (323)
Q Consensus 150 ~l~ 152 (323)
.|.
T Consensus 112 ~l~ 114 (118)
T PRK01492 112 KII 114 (118)
T ss_pred HHH
Confidence 543
No 162
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.29 E-value=1.6e+02 Score=25.11 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCCC-hHHHH--HHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQT-EGDIG--EAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG 107 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-E~~lG--~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg 107 (323)
+++...+.+.|.++|..|+=|+..|.. -..++ +.+++.+ +.+ +-.|....-.+.+...+-++.-..|+|
T Consensus 130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~------~~~--v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV------GGR--VGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh------CCC--ceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 378889999999999999999988862 11111 2333321 122 233332222377777777777777777
Q ss_pred CC
Q psy15050 108 LD 109 (323)
Q Consensus 108 ~d 109 (323)
++
T Consensus 202 ~s 203 (203)
T cd00959 202 TS 203 (203)
T ss_pred CC
Confidence 63
No 163
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.29 E-value=2.7e+02 Score=25.36 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCC------cceEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCC
Q psy15050 146 RGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKI------KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWT 219 (323)
Q Consensus 146 ~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~------~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~ 219 (323)
+.++.|....++..+-=++.+.+...++.+...- -+..+.+-+.-..+|..+.+.+++-++-++.-+.-.+
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--- 221 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--- 221 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc---
Confidence 3455554445555555555565555554433221 1122233333334578899999998888876543322
Q ss_pred CCCCCCCCChHHHHHHHHHcCC------CHHHHHHHHHhcCCeEEec---cCcC
Q psy15050 220 NPDKPLLINDDVLKEIADKYRK------SPAQVVLRYLVFLMVCRLS---SGEH 264 (323)
Q Consensus 220 ~~~~~~~l~~~~l~~ia~~~~~------s~aq~al~w~l~~~~v~i~---~~~~ 264 (323)
+-.+|.++|++++. ++.++-..|.-....+-|. |+|+
T Consensus 222 --------NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~ 267 (280)
T TIGR00216 222 --------NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPD 267 (280)
T ss_pred --------hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCH
Confidence 34789999999875 6888999999877666555 7776
No 164
>PLN02321 2-isopropylmalate synthase
Probab=27.28 E-value=7e+02 Score=25.67 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCceeEEE-eecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC---------ccEEEecCC
Q psy15050 96 VQACQNSCKKLGLDYVDLYL-IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL---------AKSIGVSNF 165 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk---------Ir~iGvSn~ 165 (323)
+-.+-+-|.++|+|+|.+-+ ..+|.+ ++++..+.+..+ .+-.+++--
T Consensus 110 Kl~Ia~~L~~lGVd~IEvGfP~~Sp~D-----------------------~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra 166 (632)
T PLN02321 110 KLDIARQLAKLGVDIIEAGFPIASPDD-----------------------LEAVKTIAKEVGNEVDEDGYVPVICGLSRC 166 (632)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCCCccH-----------------------HHHHHHHHHhcccCCCccccceeeeeehhc
Q ss_pred CHHHHHHHHHh---CCCcceEeeecccCCcCh--------------HHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCC
Q psy15050 166 NSGQIKRILDC---AKIKPVNLQIEVHPYLNQ--------------RKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLIN 228 (323)
Q Consensus 166 ~~~~l~~l~~~---~~~~~~~~q~~~~~~~~~--------------~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~ 228 (323)
....++.+++. +..+-+.+-+..+..+.+ .+.+++|+++|...+.|+|--.+ ...
T Consensus 167 ~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~--------rtd 238 (632)
T PLN02321 167 NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG--------RSD 238 (632)
T ss_pred cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC--------CCC
Q ss_pred hHHHHHHHHH
Q psy15050 229 DDVLKEIADK 238 (323)
Q Consensus 229 ~~~l~~ia~~ 238 (323)
.+.+.++++.
T Consensus 239 ~d~l~~~~~~ 248 (632)
T PLN02321 239 PEFLYRILGE 248 (632)
T ss_pred HHHHHHHHHH
No 165
>PRK07328 histidinol-phosphatase; Provisional
Probab=27.28 E-value=4.5e+02 Score=23.41 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC---------------hHHHHHHHHhH--hhcCCCCCCcEEEEeccCCCCCChHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT---------------EGDIGEAIKEK--INSGDIKREELFITTKVWITHFEPDM 94 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------------E~~lG~al~~~--~~~~~~~R~~v~i~tK~~~~~~~~~~ 94 (323)
....+.+++|++.|+..+=.+++... ..-+-..++.. ++.. ..+=+|.+.--+... + .
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~-y~~i~Il~GiE~~~~---~-~ 92 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRAR-FPDLYVRLGIEADYH---P-G 92 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHH-cCCCeEEEEEEeccc---C-C
Confidence 34678999999999998766655221 01111111110 0000 111234444444322 2 2
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHH----HHHHHHHHcCCccEEEec
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETW----RGMEKCVEKGLAKSIGVS 163 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~aL~~l~~~GkIr~iGvS 163 (323)
....+++.|++-..||+ +.-+|+...+. .............+..+.+ +.+.++.+.|.+.-||=-
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWG---FDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcC---CCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 34556667777777877 77889864321 0000000000012233444 357777888888777743
No 166
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.26 E-value=2.7e+02 Score=24.03 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCC-HHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN-SGQ 169 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~-~~~ 169 (323)
+++...+ +-+.|-+-|+..+.+=+ +. ...++.+++++++..=-.||..+.- .++
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-----------------------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-----------------------PVALDAIRLLRKEVPDALIGAGTVLNPEQ 72 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-----------------------ccHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 4444433 44556667877666443 22 2345556666655333568988874 577
Q ss_pred HHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEE
Q psy15050 170 IKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTA 210 (323)
Q Consensus 170 l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via 210 (323)
++++.+.. -++. .+|.. +.+++++|+++||.++.
T Consensus 73 a~~a~~aG-A~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 73 LRQAVDAG-AQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHcC-CCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 78777644 3334 34432 56999999999998875
No 167
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=26.94 E-value=2.6e+02 Score=25.58 Aligned_cols=126 Identities=11% Similarity=0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHHHH--HcCCccEEEecCCCHHHHHHHHHhCCC------cceEeeecccCCcChHHHHHHHHhcCcEEEEecC
Q psy15050 142 EETWRGMEKCV--EKGLAKSIGVSNFNSGQIKRILDCAKI------KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 142 ~~~~~aL~~l~--~~GkIr~iGvSn~~~~~l~~l~~~~~~------~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~sp 213 (323)
-+..+.++.|. ...++-++-=.+.+.+...++.+...- .|..+-+-|---++|..+.+.+.+-++-++.-++
T Consensus 143 ve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~ 222 (294)
T COG0761 143 VESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSK 222 (294)
T ss_pred EecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCC
Confidence 34445555553 222444444344444444443333221 2233333344445578889999999999988766
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHcCC------CHHHHHHHHHhcCCeEEec---cCcCceecccCCHHHHHHHhcCC
Q psy15050 214 LGAPWTNPDKPLLINDDVLKEIADKYRK------SPAQVVLRYLVFLMVCRLS---SGEHKVFVEQGSPTEEHAIQSYS 283 (323)
Q Consensus 214 l~~G~~~~~~~~~l~~~~l~~ia~~~~~------s~aq~al~w~l~~~~v~i~---~~~~~~~~~~Lt~~e~~~l~~~~ 283 (323)
-.+. ..+|.++|++.|. ++.++=..|+.....+-|. |+|+ .|-++-++.|+++.
T Consensus 223 nSSN-----------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd-----~lV~~Vi~~l~~~~ 285 (294)
T COG0761 223 NSSN-----------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPD-----WLVQEVIAKLRELG 285 (294)
T ss_pred CCcc-----------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCH-----HHHHHHHHHHHHhc
Confidence 6543 4789999999987 5788888898887766665 7776 23334445555443
No 168
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.79 E-value=5.7e+02 Score=24.64 Aligned_cols=109 Identities=8% Similarity=0.005 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC--ceeEEEeecccccCCCCCCCCCc
Q psy15050 55 YQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLD--YVDLYLIHWPFAIKGKDVHDTSF 132 (323)
Q Consensus 55 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d--~iDl~~lH~p~~~~~~~~~~~~~ 132 (323)
||.|+.|-+++++.+... ...+=++|.|-+. .+-|-..++...+++.-. -+.++.+|.|... |
T Consensus 78 ~Gg~~~L~~ai~ei~~~~-~~P~~I~V~tTC~-----~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~-g-------- 142 (427)
T PRK02842 78 ADANEELDRVVEELIKRR-PNISVLFLVGSCP-----SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLE-T-------- 142 (427)
T ss_pred CCcHHHHHHHHHHHHhcc-CCCCEEEEECCCh-----HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCcc-c--------
Confidence 678888888888754432 1234466666652 233444455555555433 3678888877531 0
Q ss_pred cCCCCCccHHHHHHHHHHHH-----HcCCccEEEecCCC-HHHHHHHHHhCCCcc
Q psy15050 133 EGEHNNVSIEETWRGMEKCV-----EKGLAKSIGVSNFN-SGQIKRILDCAKIKP 181 (323)
Q Consensus 133 ~~~~~~~~~~~~~~aL~~l~-----~~GkIr~iGvSn~~-~~~l~~l~~~~~~~~ 181 (323)
........++++|-+.. ..+.|--+|..+-. .+++.++++..++++
T Consensus 143 ---~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 143 ---TFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGV 194 (427)
T ss_pred ---cHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCee
Confidence 00122344455444333 34677778865532 267889999888754
No 169
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.52 E-value=4.6e+02 Score=25.02 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=63.9
Q ss_pred eCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCC
Q psy15050 50 DTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHD 129 (323)
Q Consensus 50 DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~ 129 (323)
+..-.||.|..|-++|++..+.. +.+-++|.|-.... .--+.+..-+++.-++. -+.++.+|.|... |
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~-~iGdDi~~v~~~~~~~~---~~~vi~v~t~gf~-g----- 130 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERY--HPKAVFVYSTCVVA-LIGDDIDAVCKTASEKF---GIPVIPVHSPGFV-G----- 130 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhC--CCCEEEEECCCchh-hhccCHHHHHHHHHHhh---CCCEEEEECCCcc-c-----
Confidence 34445888888899998866543 33456777665332 11112333333322233 2578888877542 1
Q ss_pred CCccCCCCCccHHHHHHHHHHHH---------HcCCccEEEecCCC--HHHHHHHHHhCCCcce
Q psy15050 130 TSFEGEHNNVSIEETWRGMEKCV---------EKGLAKSIGVSNFN--SGQIKRILDCAKIKPV 182 (323)
Q Consensus 130 ~~~~~~~~~~~~~~~~~aL~~l~---------~~GkIr~iGvSn~~--~~~l~~l~~~~~~~~~ 182 (323)
........++++|-+.. +.+.|--||-.+.. .+++.++++..++++.
T Consensus 131 ------~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 188 (410)
T cd01968 131 ------NKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVL 188 (410)
T ss_pred ------ChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEE
Confidence 11233344555554443 14678888844443 3578999998887544
No 170
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.52 E-value=2.5e+02 Score=23.27 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHH-HcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHH
Q psy15050 35 KNAVLAAI-DAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSC 103 (323)
Q Consensus 35 ~~~l~~A~-~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL 103 (323)
...+...+ +.|++.....-.--++..|-++|+.+. .+.+++|+| .+...-..+.+.+++.+.+
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-----~~~dlVItt-GG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-----ERADLVITT-GGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-----hCCCEEEEC-CCCCCCCCChHHHHHHHHh
Confidence 34455544 779987765444346777888887752 467899998 3333223344555555543
No 171
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=26.50 E-value=59 Score=22.21 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCHHHHH
Q psy15050 231 VLKEIADKYRKSPAQVV 247 (323)
Q Consensus 231 ~l~~ia~~~~~s~aq~a 247 (323)
.+.+||+++|+|..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 57899999999999864
No 172
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.46 E-value=5.7e+02 Score=24.39 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC---hHHHHHHHHhcCcEEEEecCCCCC
Q psy15050 143 ETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN---QRKLIDFCKKHNITVTAYSPLGAP 217 (323)
Q Consensus 143 ~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gI~via~spl~~G 217 (323)
.++..+..+.+.+.++.+-+...+.+.+++++.. +.+.+++...-||.-. -.++.+.|+++|+.++.=..++.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4455555555555577676665567777776642 3344555555555433 268899999999999876665443
No 173
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=26.42 E-value=2.7e+02 Score=24.89 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHcCCccEEEe-cCCCHHHHHHHHHhCCCcceEeeecccCCcCh--HHHHHHHHhcCcEEEEecCCCC
Q psy15050 148 MEKCVEKGLAKSIGV-SNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAYSPLGA 216 (323)
Q Consensus 148 L~~l~~~GkIr~iGv-Sn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gI~via~spl~~ 216 (323)
|.+-.++|+. -+|+ .......+.+++...+++++++=.+-.++..+ ..++..|+..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~ 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 4444555775 4554 44444677788888889999988888887764 5788999999999999887654
No 174
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.27 E-value=5.8e+02 Score=24.61 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC----CceeEEEeecccccCCCCCCC
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGL----DYVDLYLIHWPFAIKGKDVHD 129 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~----d~iDl~~lH~p~~~~~~~~~~ 129 (323)
.||.++.|-++|++..+.. ..+=++|.|-.. ++-+-..++...+++.- ..+.++.++.|... |
T Consensus 65 VfGg~~kL~~aI~~~~~~~--~P~~I~V~ttc~-----~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~-g----- 131 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQY--NPEVIGIATTCL-----SETIGEDVPRIIREFREEVDDSEPKIIPASTPGYG-G----- 131 (429)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCEEEEeCCch-----HHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCc-c-----
Confidence 4788888888988765432 233466666542 22333334444444432 23567888877542 1
Q ss_pred CCccCCCCCccHHHHHHHHHHH-H----HcCCccEEEecCC--CHHHHHHHHHhCCCcc
Q psy15050 130 TSFEGEHNNVSIEETWRGMEKC-V----EKGLAKSIGVSNF--NSGQIKRILDCAKIKP 181 (323)
Q Consensus 130 ~~~~~~~~~~~~~~~~~aL~~l-~----~~GkIr~iGvSn~--~~~~l~~l~~~~~~~~ 181 (323)
........++++|-+. . +.++|--||-.+. +.+++.++++..++++
T Consensus 132 ------~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 132 ------THVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred ------cHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 1112334445554432 2 2466777874333 4477888999888765
No 175
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=25.87 E-value=4.6e+02 Score=23.09 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC------Ch--------HHHHHHHHhHhhcCCCCCCcE--EEEeccCCCCCChHHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ------TE--------GDIGEAIKEKINSGDIKREEL--FITTKVWITHFEPDMV 95 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg------~E--------~~lG~al~~~~~~~~~~R~~v--~i~tK~~~~~~~~~~i 95 (323)
....+.+++|++.|+..+=-+++.. .+ ..+.+.++..-......++++ .+.--+.. -+ ..
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~~---~~-~~ 90 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVDY---IP-GF 90 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEecc---cc-ch
Confidence 5578999999999999876665521 11 112221111000000122333 33333322 12 23
Q ss_pred HHHHHHHHHHhCCCceeEEEeeccc
Q psy15050 96 VQACQNSCKKLGLDYVDLYLIHWPF 120 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~lH~p~ 120 (323)
...++..|++.+.||+ +.-+|+..
T Consensus 91 ~~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 91 EDFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred HHHHHHHHHHCCCCeE-EEEEEeec
Confidence 4557778888888888 88889864
No 176
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=25.76 E-value=2.8e+02 Score=22.44 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=41.9
Q ss_pred HHHHHHHHHHc---CCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcC--hHHHHHHHHhcCcEEEEec
Q psy15050 144 TWRGMEKCVEK---GLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLN--QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 144 ~~~aL~~l~~~---GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gI~via~s 212 (323)
.++.|.+|.++ =-+.-+=+.....+.+.++++..++.-+...-+|.+... +..+.+.|.++||.+..+.
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEEC
Confidence 34444444433 234444455556678888888777655555555655444 4688999999999998764
No 177
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=25.75 E-value=65 Score=23.51 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q psy15050 94 MVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRI 173 (323)
Q Consensus 94 ~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l 173 (323)
.+-...+...+.||....|+..|..-.+ .-..+.+...|...++.- | .+-+...|.++
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~~p----------------~~l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~a 68 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKENHP----------------HNVQSQIVEALVKWRQRF-----G-KKATVQSLIQS 68 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHHhc-----C-CCCcHHHHHHH
Confidence 3445677778899999989888764211 223467888899988852 3 35667889999
Q ss_pred HHhCCCcceEeee
Q psy15050 174 LDCAKIKPVNLQI 186 (323)
Q Consensus 174 ~~~~~~~~~~~q~ 186 (323)
+..+++++.+.|+
T Consensus 69 L~~~~~~~~~~~~ 81 (83)
T cd08319 69 LKAVEVDPSVLQF 81 (83)
T ss_pred HHHcCCCHHHHHh
Confidence 9999888776554
No 178
>PLN02775 Probable dihydrodipicolinate reductase
Probab=25.65 E-value=3.7e+02 Score=24.58 Aligned_cols=71 Identities=8% Similarity=0.158 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q psy15050 99 CQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK 178 (323)
Q Consensus 99 ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~ 178 (323)
++..|..+.-+|.|++++..- ....+.+.++.+.+.|+--=+|.+.|+.++++++.+...
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT--------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~ 127 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT--------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESG 127 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC--------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCC
Confidence 455665555568898877642 346778889999999999999999999999988876444
Q ss_pred CcceEeeecccC
Q psy15050 179 IKPVNLQIEVHP 190 (323)
Q Consensus 179 ~~~~~~q~~~~~ 190 (323)
+ +.++--||+.
T Consensus 128 i-~vv~apNfSi 138 (286)
T PLN02775 128 V-YAVIAPQMGK 138 (286)
T ss_pred c-cEEEECcccH
Confidence 4 4555555554
No 179
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.62 E-value=90 Score=27.71 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred CCCCccCccccccCc---CCC-C---chHHH----HHHHHHHHcCCCEEeCCCC---C--CChHHHHHHHHh---HhhcC
Q psy15050 12 NNGQEIPALGLGTWQ---GEP-G---SGDVK----NAVLAAIDAGYRHIDTAEV---Y--QTEGDIGEAIKE---KINSG 72 (323)
Q Consensus 12 ~tg~~vs~lglGt~~---~~~-~---~~~~~----~~l~~A~~~Gi~~~DTA~~---Y--g~E~~lG~al~~---~~~~~ 72 (323)
.+|+.+|.++|.+.+ ++. + .+++. +++..|.+.|||.|--|.. | ++++...+.+.. ...-
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l- 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL- 143 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH-
Confidence 689999999999854 222 1 23343 4566667889999998852 2 244444444332 1111
Q ss_pred CCCCCcEEEEeccC
Q psy15050 73 DIKREELFITTKVW 86 (323)
Q Consensus 73 ~~~R~~v~i~tK~~ 86 (323)
..+-+|.++--+.
T Consensus 144 -A~~aqV~lAvEiM 156 (287)
T COG3623 144 -AARAQVMLAVEIM 156 (287)
T ss_pred -HHhhccEEEeeec
Confidence 1466777777663
No 180
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=25.09 E-value=3.8e+02 Score=21.80 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=42.6
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC--CCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLG--LDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCV 152 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~ 152 (323)
.|=-+.|+-|++........+++.+.++.+.+. +...|++++-.+... ..+..+..+.|..|.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~---------------~~~~~~l~~~l~~LL 112 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA---------------KASNPQLRDAFLRLL 112 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc---------------cCCHHHHHHHHHHHH
Confidence 455577777775445567778888887777553 234488888766432 456677777777776
Q ss_pred Hc
Q psy15050 153 EK 154 (323)
Q Consensus 153 ~~ 154 (323)
+.
T Consensus 113 ~k 114 (145)
T PRK04820 113 RR 114 (145)
T ss_pred HH
Confidence 65
No 181
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.96 E-value=3.3e+02 Score=23.93 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCcEE
Q psy15050 195 RKLIDFCKKHNITV 208 (323)
Q Consensus 195 ~~l~~~~~~~gI~v 208 (323)
.++++.|+++|+..
T Consensus 119 ~~~~~~~~~~g~~~ 132 (242)
T cd04724 119 EEFREAAKEYGLDL 132 (242)
T ss_pred HHHHHHHHHcCCcE
Confidence 35556666666544
No 182
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=24.92 E-value=6.9e+02 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=27.5
Q ss_pred ECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCCCEEeCCC
Q psy15050 10 QLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAE 53 (323)
Q Consensus 10 ~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~ 53 (323)
+|+.|.+.+.+.|.+ ++..++.+...+.|+..|+...
T Consensus 8 TLRDG~Q~~g~~~s~-------e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 8 TLRDGEQSPGASLTV-------EEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CCCccCcCCCCCcCH-------HHHHHHHHHHHHcCCCEEEEEC
Confidence 567777766554432 7778888888899999999753
No 183
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=24.86 E-value=89 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ 56 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg 56 (323)
..+.+....+++.|++.||.+..|.
T Consensus 77 ~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 77 GASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred hHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 6678899999999999999999984
No 184
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=24.74 E-value=4e+02 Score=24.25 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCC---------CC--Ch-------HHHHHHHHhHhhcCCCCCCcEEEEeccCC----CC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEV---------YQ--TE-------GDIGEAIKEKINSGDIKREELFITTKVWI----TH 89 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~---------Yg--~E-------~~lG~al~~~~~~~~~~R~~v~i~tK~~~----~~ 89 (323)
+...++|+.-.+.||++|=.++. ++ -+ +.+|+.+++ ..+-++.--+. ..
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~---------~~iRls~HP~qf~vLnS 115 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE---------NGIRLSMHPDQFTVLNS 115 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH---------TT-EEEE---TT--TT-
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH---------cCCeEEecCCcceeCCC
Confidence 34567788888999999987763 11 12 244544443 34566655432 12
Q ss_pred CChHHHHHHHHH------HHHHhCCCce--eEEEeecc
Q psy15050 90 FEPDMVVQACQN------SCKKLGLDYV--DLYLIHWP 119 (323)
Q Consensus 90 ~~~~~i~~~ve~------SL~rLg~d~i--Dl~~lH~p 119 (323)
.+++.+.+++.. .|+.||.+.- ..+.||-=
T Consensus 116 p~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~G 153 (275)
T PF03851_consen 116 PREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVG 153 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeC
Confidence 356666666654 4788998877 78899953
No 185
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=24.71 E-value=6.5e+02 Score=24.44 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCC--C-ccCCCCCccHHHHHHHHHHHHH-----cCCccEEEe
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDT--S-FEGEHNNVSIEETWRGMEKCVE-----KGLAKSIGV 162 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~--~-~~~~~~~~~~~~~~~aL~~l~~-----~GkIr~iGv 162 (323)
++..+.....+.++.-..+.--.++||-|.....=.+... . ........-.+...+.++...+ .+.|+.|=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~ 120 (449)
T PRK09058 41 PAEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYF 120 (449)
T ss_pred ChHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEE
Confidence 4456666666666432222334689999976531000000 0 0000000112333444444333 245776644
Q ss_pred -----cCCCHHHHHHHHHhCC----Ccc-eEeeecccCCcChHHHHHHHHhcCcEEEEecCC
Q psy15050 163 -----SNFNSGQIKRILDCAK----IKP-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 163 -----Sn~~~~~l~~l~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl 214 (323)
|..+++++.++++... +.. .-+-++.+|-.-..+.+..+++.|+.-+..+.-
T Consensus 121 GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 121 GGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred CCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCC
Confidence 3345567777765432 211 123455566555788999999999988877544
No 186
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.71 E-value=3.8e+02 Score=24.64 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=61.3
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCCcc-e-----EeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCC
Q psy15050 155 GLAKSIGVSNFNSGQIKRILDCAKIKP-V-----NLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLIN 228 (323)
Q Consensus 155 GkIr~iGvSn~~~~~l~~l~~~~~~~~-~-----~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~~~~l~ 228 (323)
.++..+-=++.+.+..+++.+...-++ . .+.+-+.-..++..+.+.+++.+.-++.-++-.+ +
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----------N 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-----------N 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-----------c
Confidence 445555555566665555544332111 1 1112122223467899999999988887544332 3
Q ss_pred hHHHHHHHHHcCC------CHHHHHHHHHhcCCeEEec---cCcC
Q psy15050 229 DDVLKEIADKYRK------SPAQVVLRYLVFLMVCRLS---SGEH 264 (323)
Q Consensus 229 ~~~l~~ia~~~~~------s~aq~al~w~l~~~~v~i~---~~~~ 264 (323)
-.+|.++|++++. ++.++-..|+.....+-|. |+|+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~ 269 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPE 269 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCH
Confidence 4789999999875 6889999999776666555 7776
No 187
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.70 E-value=3.4e+02 Score=23.38 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCccEEEecCCC-HHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEE
Q psy15050 144 TWRGMEKCVEKGLAKSIGVSNFN-SGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTA 210 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvSn~~-~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via 210 (323)
..+.+++++++..=-.||..+.- .++++++++.. -++. .+| ..+.+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~Fi-----vSP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFI-----VSP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEE-----ECC-CCCHHHHHHHHHcCCCEeC
Confidence 45556666655333558888774 57777777644 3333 344 2356999999999999875
No 188
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.66 E-value=87 Score=19.73 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Q psy15050 231 VLKEIADKYRKSPAQVVLRYLVF 253 (323)
Q Consensus 231 ~l~~ia~~~~~s~aq~al~w~l~ 253 (323)
.+.++|+++|+|..++ -+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4678999999998775 788754
No 189
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=24.48 E-value=4.7e+02 Score=22.70 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHH-----HHHHHHHHHHhC
Q psy15050 33 DVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMV-----VQACQNSCKKLG 107 (323)
Q Consensus 33 ~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i-----~~~ve~SL~rLg 107 (323)
+..+.++.|++.|+.-+-+.+.|. ...+..+. ....++-++.++.......+.- ...+++.++ +|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~------~~~~~~~~---~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~-~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV------KPAAELLA---GSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR-LG 89 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH------HHHHHHST---TSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH-TT
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH------HHHHHHhh---ccccccceEEEeCCCCCccccccccchHHHHHHHHH-cC
Confidence 788999999999999998888773 12222111 1223677777775444444434 577887754 99
Q ss_pred CCceeEEEeecc
Q psy15050 108 LDYVDLYLIHWP 119 (323)
Q Consensus 108 ~d~iDl~~lH~p 119 (323)
.|-||+++-..+
T Consensus 90 Ad~vd~vi~~~~ 101 (236)
T PF01791_consen 90 ADEVDVVINYGA 101 (236)
T ss_dssp -SEEEEEEEHHH
T ss_pred Cceeeeeccccc
Confidence 999999887644
No 190
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=24.30 E-value=7e+02 Score=24.62 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCce
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYV 111 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~i 111 (323)
+-....++.|.+.||..|=..+.-...+.+-.+++..-+.+ ..-++.|+-... ..++.+.+.+.+++ +..+|.|
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G--~~~~~~i~yt~s-p~~t~~y~~~~a~~-l~~~Gad-- 178 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTG--KEAQLCIAYTTS-PVHTLNYYLSLVKE-LVEMGAD-- 178 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcC--CEEEEEEEEEeC-CcCcHHHHHHHHHH-HHHcCCC--
Confidence 66778899999999999888776654444444444321112 111133333222 23455666666655 4568865
Q ss_pred eEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 112 DLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 112 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+.|-.... .....++.+-+..+++... .-||+-.|+..
T Consensus 179 -~I~IkDtaG----------------~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~ 217 (468)
T PRK12581 179 -SICIKDMAG----------------ILTPKAAKELVSGIKAMTN-LPLIVHTHATS 217 (468)
T ss_pred -EEEECCCCC----------------CcCHHHHHHHHHHHHhccC-CeEEEEeCCCC
Confidence 455543322 3445566666666666544 35898888754
No 191
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.30 E-value=6.1e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=15.1
Q ss_pred cEEEecCCCHHHHHHHHHhCCCc
Q psy15050 158 KSIGVSNFNSGQIKRILDCAKIK 180 (323)
Q Consensus 158 r~iGvSn~~~~~l~~l~~~~~~~ 180 (323)
--++++.++++..+++++....+
T Consensus 294 pv~~~G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 294 VIIGAGAYTAEKAETLIGKGLID 316 (362)
T ss_pred CEEEeCCCCHHHHHHHHHcCCCC
Confidence 34555566777888888776553
No 192
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.28 E-value=7.6e+02 Score=25.04 Aligned_cols=156 Identities=10% Similarity=0.037 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCCC-C--hHHHH--HHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC
Q psy15050 33 DVKNAVLAAIDAGYRHIDTAEVYQ-T--EGDIG--EAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLG 107 (323)
Q Consensus 33 ~~~~~l~~A~~~Gi~~~DTA~~Yg-~--E~~lG--~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg 107 (323)
...+.+++-.+.|-.|+|.+..=| + +..+. ..++.. -.+-.+--+.-.+.+...+...+++. ..+|
T Consensus 16 nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~--------~Gie~i~HLTCrd~n~~~L~~~L~~a-~~~G 86 (565)
T PLN02540 16 NLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNM--------ICVETMMHLTCTNMPVEKIDHALETI-KSNG 86 (565)
T ss_pred HHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHh--------cCCCeeEEeeecCCCHHHHHHHHHHH-HHCC
Confidence 344556666788999999876554 2 33332 223321 01222222222345666677777666 7788
Q ss_pred CCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCccEEEecCCCH------------------H
Q psy15050 108 LDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLAKSIGVSNFNS------------------G 168 (323)
Q Consensus 108 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkIr~iGvSn~~~------------------~ 168 (323)
+. .++.|..-.+..++. +. .....+..+.+-++.+++. |..-.|||+.|.. .
T Consensus 87 Ir--NILALrGDpp~~~d~-~~------~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~ 157 (565)
T PLN02540 87 IQ--NILALRGDPPHGQDK-FV------QVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQK 157 (565)
T ss_pred CC--EEEEECCCCCCCCCC-cC------CCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHH
Confidence 76 456665322110100 00 0011222344444445544 5567789987642 2
Q ss_pred HHHHHHHh--CCCcceEeeecccCCcChHHHHHHHHhcCcE
Q psy15050 169 QIKRILDC--AKIKPVNLQIEVHPYLNQRKLIDFCKKHNIT 207 (323)
Q Consensus 169 ~l~~l~~~--~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~ 207 (323)
.+..+.+. ++.++.+.|.-|.. ..-.+.++.|++.||.
T Consensus 158 dl~~Lk~KvdAGAdFiITQlfFD~-d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 158 DLAYLKEKVDAGADLIITQLFYDT-DIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHHHHcCCCEEeeccccCH-HHHHHHHHHHHhcCCC
Confidence 34444332 45678888877653 1124678889999843
No 193
>KOG0023|consensus
Probab=24.18 E-value=3.7e+02 Score=25.23 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=74.9
Q ss_pred CCeEECCCCCccCccccccCcCCCCchHHHHHHHHHHHcCC--CEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEe
Q psy15050 6 APTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGY--RHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITT 83 (323)
Q Consensus 6 m~~~~L~tg~~vs~lglGt~~~~~~~~~~~~~l~~A~~~Gi--~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~t 83 (323)
|.+.-++.|..+-.+|+|. ++. =.++.|-..|. ..||+++.= .| ++++.+ --|.++++|
T Consensus 174 Lk~~g~~pG~~vgI~GlGG--LGh------~aVq~AKAMG~rV~vis~~~~k-ke----ea~~~L------GAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGG--LGH------MAVQYAKAMGMRVTVISTSSKK-KE----EAIKSL------GADVFVDST 234 (360)
T ss_pred hHHcCCCCCcEEEEecCcc--cch------HHHHHHHHhCcEEEEEeCCchh-HH----HHHHhc------CcceeEEec
Confidence 4444555666776778876 322 35666666675 467776421 13 233431 224444444
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEec
Q psy15050 84 KVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS 163 (323)
Q Consensus 84 K~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvS 163 (323)
| +++ +.+++..++. .+.|.+--+--| ..-.+++-+|..|++-.+|+-
T Consensus 235 ~------d~d-~~~~~~~~~d-g~~~~v~~~a~~-------------------------~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 235 E------DPD-IMKAIMKTTD-GGIDTVSNLAEH-------------------------ALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred C------CHH-HHHHHHHhhc-Ccceeeeecccc-------------------------chHHHHHHhhcCCEEEEEeCc
Confidence 4 333 5555655554 333332222111 223467778899999999997
Q ss_pred CCCHHHHHHHHHhCCCcceEeeecccCC-cC--hHHHHHHHHhcCcEE
Q psy15050 164 NFNSGQIKRILDCAKIKPVNLQIEVHPY-LN--QRKLIDFCKKHNITV 208 (323)
Q Consensus 164 n~~~~~l~~l~~~~~~~~~~~q~~~~~~-~~--~~~l~~~~~~~gI~v 208 (323)
... -.+.-..-.. -...+.-+.. .+ -++++++|.+++|..
T Consensus 282 ~~~-~~~~~~~lil----~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 282 EKP-LKLDTFPLIL----GRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCc-ccccchhhhc----ccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 652 2211110000 1111122221 11 268999999998765
No 194
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.16 E-value=5.4e+02 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=23.1
Q ss_pred cEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeec
Q psy15050 78 ELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHW 118 (323)
Q Consensus 78 ~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~ 118 (323)
.|.|..=.. ..+.+.+.+++-+.|..-|++ +.++.++.
T Consensus 248 ~V~l~Y~sm--yg~T~~ma~aiaegl~~~gv~-v~~~~~~~ 285 (388)
T COG0426 248 KVDLIYDSM--YGNTEKMAQAIAEGLMKEGVD-VEVINLED 285 (388)
T ss_pred eEEEEEecc--cCCHHHHHHHHHHHhhhcCCc-eEEEEccc
Confidence 455554432 235566777788888877775 55555553
No 195
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.13 E-value=1.7e+02 Score=17.95 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeEEec-cCcCceecccCCHHHHHHHhc
Q psy15050 232 LKEIADKYRKSPAQVVLRYLVFLMVCRLS-SGEHKVFVEQGSPTEEHAIQS 281 (323)
Q Consensus 232 l~~ia~~~~~s~aq~al~w~l~~~~v~i~-~~~~~~~~~~Lt~~e~~~l~~ 281 (323)
+.++|+..|+++.. |++-.++|..+ | .+.. .....+++|+..|..
T Consensus 3 ~~e~a~~~gv~~~t--lr~~~~~g~l~-~~~~~~--~~~~y~~~~v~~l~~ 48 (49)
T cd04761 3 IGELAKLTGVSPST--LRYYERIGLLS-PARTEG--GYRLYSDADLERLRL 48 (49)
T ss_pred HHHHHHHHCcCHHH--HHHHHHCCCCC-CCcCCC--CCEEeCHHHHHHhhh
Confidence 56789999999984 55556777655 4 3222 223478888887764
No 196
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.03 E-value=3.7e+02 Score=21.39 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHHHHHHH-HcCCCEEeCCCCCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHH
Q psy15050 35 KNAVLAAI-DAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQ 100 (323)
Q Consensus 35 ~~~l~~A~-~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve 100 (323)
...|...+ +.|++........-++..|-++|+++ ..+.+++|+|= +...-..+.+.++++
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~-----~~~~DliIttG-G~g~g~~D~t~~ai~ 89 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA-----VDEADVVLTTG-GTGVGPRDVTPEALE 89 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH-----HhCCCEEEECC-CCCCCCCccHHHHHH
Confidence 33444444 67998887666655677788888764 24678999993 332223334444444
No 197
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=23.89 E-value=5.7e+02 Score=23.48 Aligned_cols=17 Identities=6% Similarity=0.319 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHcCC
Q psy15050 140 SIEETWRGMEKCVEKGL 156 (323)
Q Consensus 140 ~~~~~~~aL~~l~~~Gk 156 (323)
.++.++++++.+++.|.
T Consensus 147 ~f~~~l~~I~~l~~~G~ 163 (318)
T TIGR03470 147 VFDRAVEAIREAKARGF 163 (318)
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 46778888888887764
No 198
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=23.85 E-value=5.2e+02 Score=23.53 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC----CccEEEecCCCHHHH
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKG----LAKSIGVSNFNSGQI 170 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~G----kIr~iGvSn~~~~~l 170 (323)
-+-.+-+.|.++|+++|.+-+ |.. . ..-.+.++.+.+.| .++..+++-.....+
T Consensus 24 ~Ki~ia~~L~~~Gv~~IE~gf---P~~-----------------~--~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~di 81 (284)
T cd07942 24 QKLRFFKLLVKIGFKEIEVGF---PSA-----------------S--QTDFDFVRELIEEDLIPDDVTIQVLTQAREDLI 81 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CCC-----------------C--HHHHHHHHHHHHccCCCCCCEEEEEcCCChhhH
Confidence 455577779999999999873 421 1 11233444444443 467778887777778
Q ss_pred HHHHHhC-CCcc--eEeeecccCCc------C--h------HHHHHHHHhcCcE
Q psy15050 171 KRILDCA-KIKP--VNLQIEVHPYL------N--Q------RKLIDFCKKHNIT 207 (323)
Q Consensus 171 ~~l~~~~-~~~~--~~~q~~~~~~~------~--~------~~l~~~~~~~gI~ 207 (323)
+.+++.. +.+. ..+-+..|..+ . + .+++++++++|+.
T Consensus 82 e~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 82 ERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred HHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8888753 3321 11111222111 1 1 4678899999975
No 199
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=23.78 E-value=4.8e+02 Score=22.60 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHhCCCceeEEEee-cccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-ccEEEecCC-CHHHHHHHHHhCCCc
Q psy15050 104 KKLGLDYVDLYLIH-WPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL-AKSIGVSNF-NSGQIKRILDCAKIK 180 (323)
Q Consensus 104 ~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk-Ir~iGvSn~-~~~~l~~l~~~~~~~ 180 (323)
..+|.||+-+.+.- +|.. .+. +...++.+.-. ++.+||.-. +.+.+.++++..++
T Consensus 19 ~~~gad~iG~If~~~SpR~-----------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~l- 76 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRY-----------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGL- 76 (208)
T ss_pred HHcCCCEEEEEEcCCCCCc-----------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCC-
Confidence 45899998877764 3321 222 23333333333 889998765 45778888877654
Q ss_pred ceEeeecccCCcChHHHHHHHHhcC-cEEEE
Q psy15050 181 PVNLQIEVHPYLNQRKLIDFCKKHN-ITVTA 210 (323)
Q Consensus 181 ~~~~q~~~~~~~~~~~l~~~~~~~g-I~via 210 (323)
..+|++-. ...+.++..++.. +.|+-
T Consensus 77 -d~VQlHG~---e~~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 77 -DAVQLHGD---EDPEYIDQLKEELGVPVIK 103 (208)
T ss_pred -CEEEECCC---CCHHHHHHHHhhcCCceEE
Confidence 78887543 2345556555553 55543
No 200
>PRK08223 hypothetical protein; Validated
Probab=23.78 E-value=4.2e+02 Score=24.22 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=74.3
Q ss_pred EeCCCCCC-ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccC-CCC
Q psy15050 49 IDTAEVYQ-TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK-GKD 126 (323)
Q Consensus 49 ~DTA~~Yg-~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~-~~~ 126 (323)
||....|. +...+|..-++. ....+|.|+.=. .+=..+-..|.+.|+..|-++=-...+..+ .-.
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~k-----L~~s~VlIvG~G--------GLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ 70 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQR-----LRNSRVAIAGLG--------GVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQ 70 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHH-----HhcCCEEEECCC--------HHHHHHHHHHHHhCCCeEEEEeCCCcchhccccc
Confidence 44444443 344455555443 244566666332 244557778999998764333111111100 000
Q ss_pred -CCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcC
Q psy15050 127 -VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHN 205 (323)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~g 205 (323)
+...+ +......+.+.+.+.++-..-+|..+=. ..+.+.+.++++.. ++++.......+.....+-++|+++|
T Consensus 71 ~l~~~~---diG~~Kve~a~~~l~~iNP~v~V~~~~~-~l~~~n~~~ll~~~--DlVvD~~D~~~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 71 AGAMMS---TLGRPKAEVLAEMVRDINPELEIRAFPE-GIGKENADAFLDGV--DVYVDGLDFFEFDARRLVFAACQQRG 144 (287)
T ss_pred cCcChh---HCCCcHHHHHHHHHHHHCCCCEEEEEec-ccCccCHHHHHhCC--CEEEECCCCCcHHHHHHHHHHHHHcC
Confidence 00000 0112233445566666666656654421 22344556666544 33443322111122356778999999
Q ss_pred cEEEEecCCCCCC
Q psy15050 206 ITVTAYSPLGAPW 218 (323)
Q Consensus 206 I~via~spl~~G~ 218 (323)
|.++.-++++.+.
T Consensus 145 iP~V~~~~~g~~g 157 (287)
T PRK08223 145 IPALTAAPLGMGT 157 (287)
T ss_pred CCEEEEeccCCeE
Confidence 9999988887543
No 201
>KOG2018|consensus
Probab=23.76 E-value=1.1e+02 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=15.6
Q ss_pred hHHHHHHHHhcCcEEEEe
Q psy15050 194 QRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 194 ~~~l~~~~~~~gI~via~ 211 (323)
.-++++||..||+.|++.
T Consensus 179 KVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 179 KVDLLEYCYNHGLKVISS 196 (430)
T ss_pred hhHHHHHHHHcCCceEec
Confidence 358999999999999964
No 202
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.74 E-value=3e+02 Score=26.26 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecCC
Q psy15050 144 TWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSPL 214 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~spl 214 (323)
-+..|.+|++...+. ..|-|-++..++.++++...+ +++|......- .-.++...|+++||.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av--dil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV--DIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC--cEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 366777777776555 566666777778888776654 56666654322 2368899999999999887654
No 203
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.51 E-value=6.3e+02 Score=23.87 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCcc
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFE 133 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 133 (323)
.||.|+.|-+++++..+.. +.+=++|.|-.... .--+.+..-+++.-++.+ +.++.+|.|... +.
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~-~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~-g~-------- 132 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTCPTG-LIGDDIEAVAKEASKELG---IPVIPVNCEGFR-GV-------- 132 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCCchh-hhccCHHHHHHHHHHhhC---CCEEEEeCCCee-CC--------
Confidence 4788888888888765432 23346666665322 111223333333333333 788999987442 10
Q ss_pred CCCCCccHHHHHHHHHHHH---------HcCCccEEEecCCC--HHHHHHHHHhCCCcce
Q psy15050 134 GEHNNVSIEETWRGMEKCV---------EKGLAKSIGVSNFN--SGQIKRILDCAKIKPV 182 (323)
Q Consensus 134 ~~~~~~~~~~~~~aL~~l~---------~~GkIr~iGvSn~~--~~~l~~l~~~~~~~~~ 182 (323)
........++++|-+.. +.+.|--||..++. ..++.++++..++++.
T Consensus 133 --~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 133 --SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred --cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 11233455666655443 34568888887663 3778899988877443
No 204
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=23.32 E-value=1.5e+02 Score=23.54 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEe
Q psy15050 96 VQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGV 162 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGv 162 (323)
+..+++.|+.+....+|.++++..+.. ..+..+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl---------------~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRL---------------GRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchh---------------ccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 455667777777778899999887664 3445666777777777633444433
No 205
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.31 E-value=4.6e+02 Score=24.35 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCc---ChHHHHHHHHhcCcEEEEecCCC
Q psy15050 145 WRGMEKCVEKGL-AKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYL---NQRKLIDFCKKHNITVTAYSPLG 215 (323)
Q Consensus 145 ~~aL~~l~~~Gk-Ir~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gI~via~spl~ 215 (323)
+..+.++++.-. =-+.|=|-++...+..+++...+ +++|+.....- .-.++...|+.+|+.++..+...
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~e 289 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC--KIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC--CEEEecccccCCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 556666665533 33667777888888888876654 56666554432 23688999999999987655443
No 206
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=23.23 E-value=6.5e+02 Score=23.89 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q psy15050 143 ETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCA 177 (323)
Q Consensus 143 ~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~ 177 (323)
...+.++.|++.|.+-++|=|+-+.+++.++++.+
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~G 212 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAG 212 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcC
Confidence 34677889999999999999999999999988765
No 207
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.08 E-value=4.4e+02 Score=24.04 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=64.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcc----eEeeecccCCcChHHHHHHHHhcCcEEEEecCCCCCCCCCCC
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP----VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDK 223 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~----~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~~G~~~~~~ 223 (323)
++.+.-..++..+-=++.+.+...++.+...-++ ..+.+-+.-..+|..+.+.+++-++-++.-+.-.+
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss------- 222 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS------- 222 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-------
Confidence 3333333444444445556565555444322111 12222223334567899999999988887544332
Q ss_pred CCCCChHHHHHHHHHcCC------CHHHHHHHHHhcCCeEEec---cCcC
Q psy15050 224 PLLINDDVLKEIADKYRK------SPAQVVLRYLVFLMVCRLS---SGEH 264 (323)
Q Consensus 224 ~~~l~~~~l~~ia~~~~~------s~aq~al~w~l~~~~v~i~---~~~~ 264 (323)
+-.+|.++|++.+. ++.++-..|+.....+-|. |+|+
T Consensus 223 ----NT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~ 268 (281)
T PRK12360 223 ----NTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPD 268 (281)
T ss_pred ----cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCH
Confidence 34789999999875 6788888999887766555 7776
No 208
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.04 E-value=6.4e+02 Score=23.73 Aligned_cols=96 Identities=19% Similarity=0.395 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-ccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL-AKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~Gk-Ir~iGvSn~~~~ 168 (323)
++.+ -+..+-+.|.++|+++|.+-+ |.. ..+-|+.+..+.+.+. .+-.+.+.....
T Consensus 19 ~s~~-~k~~ia~~L~~~Gv~~IEvG~---p~~-------------------~~~~~e~i~~i~~~~~~~~v~~~~r~~~~ 75 (363)
T TIGR02090 19 LTVE-QKVEIARKLDELGVDVIEAGF---PIA-------------------SEGEFEAIKKISQEGLNAEICSLARALKK 75 (363)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeC---CCC-------------------ChHHHHHHHHHHhcCCCcEEEEEcccCHH
Confidence 3444 344556669999999999753 321 0122556666655544 455556666677
Q ss_pred HHHHHHHhCCCcceEeeecccCCc-------C-------hHHHHHHHHhcCcEEE
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYL-------N-------QRKLIDFCKKHNITVT 209 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~-------~-------~~~l~~~~~~~gI~vi 209 (323)
.++.+.+. +.+...+-+..|... . -.+.+.+|+++|..+.
T Consensus 76 di~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 76 DIDKAIDC-GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred HHHHHHHc-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 88887764 333222222222211 1 1467889999998764
No 209
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.90 E-value=6.2e+02 Score=23.55 Aligned_cols=145 Identities=9% Similarity=0.096 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCC---ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQ---TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGL 108 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~ 108 (323)
++..+.+..+++.|++.|=.=-... .+...=+++++. --+++.|..-. +..++.+...+.++ .|+.+
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~------~g~~~~l~vDa-N~~~~~~~A~~~~~-~l~~~-- 212 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA------VGDGVGLMVDY-NQSLTVPEAIERGQ-ALDQE-- 212 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh------hCCCCEEEEeC-CCCcCHHHHHHHHH-HHHcC--
Confidence 4555666777788887654321111 122233455542 22345555444 23445544332222 23333
Q ss_pred CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHhCCCcceEeeec
Q psy15050 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLA-KSIGVSNFNSGQIKRILDCAKIKPVNLQIE 187 (323)
Q Consensus 109 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkI-r~iGvSn~~~~~l~~l~~~~~~~~~~~q~~ 187 (323)
++.++..|... +-++.+.+|++.--| -..|=+.++...+.++++...+ .++|..
T Consensus 213 ---~i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~--d~i~~~ 267 (355)
T cd03321 213 ---GLTWIEEPTLQ--------------------HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC--DLVMPD 267 (355)
T ss_pred ---CCCEEECCCCC--------------------cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC--CeEecC
Confidence 55666666431 235566677766433 2566667788888888876644 566665
Q ss_pred ccCCcC---hHHHHHHHHhcCcEEEEe
Q psy15050 188 VHPYLN---QRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 188 ~~~~~~---~~~l~~~~~~~gI~via~ 211 (323)
....-. -.++...|+.+|+.++.+
T Consensus 268 ~~~~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 268 LMKIGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred HhhhCCHHHHHHHHHHHHHcCCeeccc
Confidence 554321 358899999999998643
No 210
>KOG0059|consensus
Probab=22.53 E-value=4.1e+02 Score=28.53 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHHhCC--------------------------CceeEEEeecccccCCCCCCCCCccCCCCCccHHH
Q psy15050 90 FEPDMVVQACQNSCKKLGL--------------------------DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEE 143 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~--------------------------d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 143 (323)
.....+.+.++.+|+.+|. ....+++|..|.... | ......
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGm------------D-P~arr~ 736 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL------------D-PKARRH 736 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC------------C-HHHHHH
Confidence 3455677778888877663 235666777665421 1 134578
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCC
Q psy15050 144 TWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKI 179 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~ 179 (323)
.|..+.++++.|+ +|=+.+|+.++.+.+.....+
T Consensus 737 lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 737 LWDIIARLRKNGK--AIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred HHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhhhe
Confidence 9999999999999 899999999999988776544
No 211
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.48 E-value=4e+02 Score=21.16 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=39.2
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC--CCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLG--LDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCV 152 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~ 152 (323)
.|=-+.|+-|..........+++.+.++.+... ..-.|++++-.+... ..+..+..+.|..|.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~---------------~~~~~~l~~~l~~ll 110 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLG---------------ELENPELHQQFGKLW 110 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 344466666633334566677777777776543 245899999877542 345566666665554
Q ss_pred H
Q psy15050 153 E 153 (323)
Q Consensus 153 ~ 153 (323)
+
T Consensus 111 ~ 111 (130)
T PRK00396 111 K 111 (130)
T ss_pred H
Confidence 4
No 212
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=22.42 E-value=1.1e+03 Score=26.32 Aligned_cols=96 Identities=8% Similarity=-0.046 Sum_probs=61.4
Q ss_pred HHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCc--cEEEecCCCHHHHHHHHHhCCCc
Q psy15050 104 KKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK-GLA--KSIGVSNFNSGQIKRILDCAKIK 180 (323)
Q Consensus 104 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~-GkI--r~iGvSn~~~~~l~~l~~~~~~~ 180 (323)
..-|-+.||+-.=. + ..+-.+.++.+..+.++ -.+ --|-|-++.++.++.+++.+.-+
T Consensus 378 ve~GA~iIDVn~~~-~------------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~ 438 (1178)
T TIGR02082 378 VENGAQILDINVDY-G------------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGK 438 (1178)
T ss_pred HHCCCCEEEECCCC-C------------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCC
Confidence 35688999987521 1 12334444444444443 212 33777888889999999986656
Q ss_pred ceEeeecccCC-cChHHHHHHHHhcCcEEEEecCCCCCC
Q psy15050 181 PVNLQIEVHPY-LNQRKLIDFCKKHNITVTAYSPLGAPW 218 (323)
Q Consensus 181 ~~~~q~~~~~~-~~~~~l~~~~~~~gI~via~spl~~G~ 218 (323)
+.+|-++.-.. ..-.++++.|++.|..++.+.--..|.
T Consensus 439 ~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~ 477 (1178)
T TIGR02082 439 CIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQ 477 (1178)
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 67766554322 122479999999999999986444554
No 213
>PRK13753 dihydropteroate synthase; Provisional
Probab=22.34 E-value=6e+02 Score=23.15 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeec-ccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHW-PFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
.+.+.+.+..+..+ .-|.|-||+=---. |... + ......+..+...++.+++.+. -|.|-++.++
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~------~-----vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~ 87 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDAR------P-----VSPADEIRRIAPLLDALSDQMH--RVSIDSFQPE 87 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCC------c-----CCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHH
Confidence 35555555555544 45788888765332 3210 0 0111233444467777777653 4899999999
Q ss_pred HHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecCCC
Q psy15050 169 QIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLG 215 (323)
Q Consensus 169 ~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~spl~ 215 (323)
.++.+++.+ .+ .+|-+ +-+ ....+.+.+.+.++.++.+.-.+
T Consensus 88 va~~al~aG-ad-iINDV--sg~-~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 88 TQRYALKRG-VG-YLNDI--QGF-PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred HHHHHHHcC-CC-EEEeC--CCC-CchHHHHHHHHcCCCEEEEecCC
Confidence 999999864 33 23222 322 36788889999999998877654
No 214
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.32 E-value=5.6e+02 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC
Q psy15050 141 IEETWRGMEKCVEKGLAKSIGVSNFN 166 (323)
Q Consensus 141 ~~~~~~aL~~l~~~GkIr~iGvSn~~ 166 (323)
..++++.++.+++.|.=-.+|+||-+
T Consensus 184 ~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 184 NLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccH
Confidence 35678888888888877789999876
No 215
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=22.31 E-value=2.7e+02 Score=26.93 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=53.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcCCeEEeccCc-----C------------c-----eecccCCHHHHHHHhcCCCCC
Q psy15050 229 DDVLKEIADKYRKSPAQVVLRYLVFLMVCRLSSGE-----H------------K-----VFVEQGSPTEEHAIQSYSHLP 286 (323)
Q Consensus 229 ~~~l~~ia~~~~~s~aq~al~w~l~~~~v~i~~~~-----~------------~-----~~~~~Lt~~e~~~l~~~~~~~ 286 (323)
.++++.+|++-++++.. |+=.+..|.++||.|+ + + ..+..=.++|++.++...+
T Consensus 13 T~em~~vA~~E~v~~e~--ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~-- 88 (431)
T PRK13352 13 TEEMEYVAKKEGVDPEF--IREGVAEGRIVIPANINHKNLKPVGIGKGLRTKVNANIGTSSDISDIEEELEKAKVAVK-- 88 (431)
T ss_pred CHHHHHHHHHcCCCHHH--HHHHHhCceEEEecCCCCCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHHHHHHHHHH--
Confidence 37899999999999985 6777788999999222 1 1 1122233455655554333
Q ss_pred CcccccccccccCCcccceechhHHHHHHHhhh
Q psy15050 287 GELSNVCFTSQYDTTSGLSVRGTLVKLLQMFLR 319 (323)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (323)
-..|+-+-||-+|||..+-+..+.
T Consensus 89 ---------~GADtiMDLStggdl~~iR~~il~ 112 (431)
T PRK13352 89 ---------YGADTIMDLSTGGDLDEIRRAIIE 112 (431)
T ss_pred ---------cCCCeEeeccCCCCHHHHHHHHHH
Confidence 255788899999999887776654
No 216
>PLN00191 enolase
Probab=22.28 E-value=7.5e+02 Score=24.27 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCccEEEec--CCCHHHHHHHHHhCCCcceEeeecccCCcC---hHHHHHHHHhcCcEEEEec
Q psy15050 144 TWRGMEKCVEKGLAKSIGVS--NFNSGQIKRILDCAKIKPVNLQIEVHPYLN---QRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvS--n~~~~~l~~l~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gI~via~s 212 (323)
-|+.+.+|.+..++.-+|=- ..++..+.++++.... .++++..+-.-. -.++...|+++|+.++...
T Consensus 324 D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aa--d~i~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 324 DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKAC--NALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCC--CEEEecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 36677777777888777722 2557888888876654 455555554322 3689999999999997644
No 217
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.24 E-value=5.8e+02 Score=22.95 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHcCCCEEeCC----------CCCC-ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTA----------EVYQ-TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQAC 99 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg-~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~v 99 (323)
.++..++.+.+.+.|+..||.- ..|+ +.+.+.+.++.. .+ .-++-|..|+.+.. +.+. .+
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v-r~----~~~~Pv~vKl~~~~---~~~~-~~ 171 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV-KK----ATDVPVIVKLTPNV---TDIV-EI 171 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH-Hh----ccCCCEEEEeCCCc---hhHH-HH
Confidence 3667788888888999999862 2343 455555555542 11 11577888985431 1222 23
Q ss_pred HHHHHHhCCCceeEEE------eecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHH
Q psy15050 100 QNSCKKLGLDYVDLYL------IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF-NSGQIKR 172 (323)
Q Consensus 100 e~SL~rLg~d~iDl~~------lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~ 172 (323)
-+.+...|.|.|++.- +|.-.. .........+-.......-.++.+.++++.=.|.-||+... +.+.+.+
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~~~~---~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~ 248 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDIETR---KPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALE 248 (296)
T ss_pred HHHHHHcCCCEEEEECCCcccccccccC---ceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 3456778888776531 111000 00000000000000111235677777777656888999887 5688888
Q ss_pred HHHhCCCcceEeeecccCCcC-------hHHHHHHHHhcCc
Q psy15050 173 ILDCAKIKPVNLQIEVHPYLN-------QRKLIDFCKKHNI 206 (323)
Q Consensus 173 l~~~~~~~~~~~q~~~~~~~~-------~~~l~~~~~~~gI 206 (323)
++.. +. +.+|+--..+.. ..++-++.+++|.
T Consensus 249 ~l~~-GA--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 249 FLMA-GA--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHc-CC--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8864 33 455543222211 1455566666653
No 218
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.91 E-value=6.4e+02 Score=23.33 Aligned_cols=145 Identities=15% Similarity=0.221 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCCCC-------h--HHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHH
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEVYQT-------E--GDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNS 102 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~-------E--~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~S 102 (323)
++..+.++.+++.|++.|=.--..+. + ...=+++++.+ -+++-|.-=. +..++.+...+ .
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~------g~~~~l~vDa-n~~~~~~~A~~----~ 190 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAV------GYDVDLMLDC-YMSWNLNYAIK----M 190 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHh------CCCCcEEEEC-CCCCCHHHHHH----H
Confidence 55667778888999998764321110 1 11223444421 1233333222 22345443222 2
Q ss_pred HHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCcc
Q psy15050 103 CKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAK-SIGVSNFNSGQIKRILDCAKIKP 181 (323)
Q Consensus 103 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~l~~~~~~~~ 181 (323)
+++| +.+++.++-.|.+ .+-++.+.+|++...|. ..|=|.++...+.++++....
T Consensus 191 ~~~l--~~~~~~~iEeP~~--------------------~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~-- 246 (341)
T cd03327 191 ARAL--EKYELRWIEEPLI--------------------PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAV-- 246 (341)
T ss_pred HHHh--hhcCCccccCCCC--------------------ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCC--
Confidence 2333 2245666666643 12356677787776666 667777888899998886644
Q ss_pred eEeeecccCCc---ChHHHHHHHHhcCcEEEEe
Q psy15050 182 VNLQIEVHPYL---NQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 182 ~~~q~~~~~~~---~~~~l~~~~~~~gI~via~ 211 (323)
.++|......- .-.++...|+++|+.++.+
T Consensus 247 d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 247 DILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 66666655432 2368999999999998754
No 219
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=21.88 E-value=2.7e+02 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=34.6
Q ss_pred EEEecCCC-HH--HHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEec
Q psy15050 159 SIGVSNFN-SG--QIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 159 ~iGvSn~~-~~--~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~s 212 (323)
.|+.|-|- ++ .+.+.+..++- .+.-...||+..++++..+..+.||.|.||.
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~GA--eV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ 99 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKALGA--EVRWTGSNPLSTQDDVAAALAEEGIPVFAWK 99 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTE--EEEEEESSTTT--HHHHHHHHHTTEEEEE-T
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--eEEEecCCCcccchHHHHHhccCCceEEEeC
Confidence 57777773 33 35555566654 3444568899999999999999999999985
No 220
>KOG0173|consensus
Probab=21.88 E-value=72 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.3
Q ss_pred CcCCCCchHHHHHHHHHHHcCC
Q psy15050 25 WQGEPGSGDVKNAVLAAIDAGY 46 (323)
Q Consensus 25 ~~~~~~~~~~~~~l~~A~~~Gi 46 (323)
|+.+-+++++.+++..|+++||
T Consensus 179 ~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 179 WKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred cCcccCHHHHHHHHHHHHHhhh
Confidence 5545557999999999999997
No 221
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=21.85 E-value=4.1e+02 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCEEeCC
Q psy15050 35 KNAVLAAIDAGYRHIDTA 52 (323)
Q Consensus 35 ~~~l~~A~~~Gi~~~DTA 52 (323)
...+..+++.|+|+||.=
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 468899999999999953
No 222
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.81 E-value=6.9e+02 Score=24.18 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCcEEEEeccCCC--CCChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCC
Q psy15050 54 VYQTEGDIGEAIKEKINSGDIKREELFITTKVWIT--HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTS 131 (323)
Q Consensus 54 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~--~~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~ 131 (323)
.||.++.|-++|++..+.. +.+=++|.|-+-.. .-+-+.+.+.++.-... ..-+.++.++.|... |
T Consensus 72 VfGg~~~L~~~I~~~~~~~--~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~-g------- 139 (432)
T TIGR01285 72 ILGGDEHIEEAIDTLCQRN--KPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFK-G------- 139 (432)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcC-C-------
Confidence 5788888888888765432 33457777665332 12323333322221110 013567888877542 1
Q ss_pred ccCCCCCccHHHHHHHHH-HHHH--------cCCccEEEecCC---CHHHHHHHHHhCCCcce
Q psy15050 132 FEGEHNNVSIEETWRGME-KCVE--------KGLAKSIGVSNF---NSGQIKRILDCAKIKPV 182 (323)
Q Consensus 132 ~~~~~~~~~~~~~~~aL~-~l~~--------~GkIr~iGvSn~---~~~~l~~l~~~~~~~~~ 182 (323)
........++++|- .+.. .++|--||-++. +.+++.++++..++++.
T Consensus 140 ----~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 140 ----SLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred ----chHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 01223344555543 2221 456777786544 45678888888887654
No 223
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=21.75 E-value=4.1e+02 Score=21.05 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=43.2
Q ss_pred CCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC----CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHH
Q psy15050 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLGL----DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEK 150 (323)
Q Consensus 75 ~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rLg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~ 150 (323)
.|=-+.|+-|++. ......+++-+.++++.+.. ...|++++-.+... +.++.+.-+.|+.
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~---------------~~~~~~l~~~L~~ 110 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDAL---------------NAPFSQLTEELSR 110 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccc---------------cCCHHHHHHHHHH
Confidence 4555777778764 45677788888888887643 45899999987542 4556666666665
Q ss_pred HHH
Q psy15050 151 CVE 153 (323)
Q Consensus 151 l~~ 153 (323)
+.+
T Consensus 111 ~l~ 113 (129)
T PRK01313 111 RIE 113 (129)
T ss_pred HHH
Confidence 554
No 224
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.72 E-value=4.9e+02 Score=23.35 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=35.1
Q ss_pred CceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q psy15050 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRI 173 (323)
Q Consensus 109 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l 173 (323)
...|+++|.-|.... +...-.+.++-|.+|+++|+. |=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gv-------------D~~~~~~i~~lL~~l~~eg~t--Il~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGV-------------DVAGQKEIYDLLKELRQEGKT--VLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccC-------------CHHHHHHHHHHHHHHHHCCCE--EEEEeCCcHHhHhh
Confidence 356888888876521 123446788999999999876 77778877665554
No 225
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.58 E-value=6.6e+02 Score=23.33 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=70.9
Q ss_pred ecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe-----cCCCCCCCCCCCCCCCC-hHHHHHH
Q psy15050 162 VSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY-----SPLGAPWTNPDKPLLIN-DDVLKEI 235 (323)
Q Consensus 162 vSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~-----spl~~G~~~~~~~~~l~-~~~l~~i 235 (323)
.-..+.+.++.++....+....-.-...++..+-..++..++.|+.++.. ..+|.|...+..+.+-. -+++-+.
T Consensus 78 ~~~~~~~d~~~a~~~gk~~~~l~~ega~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~ 157 (313)
T COG2355 78 RLVRTAADIRLALKEGKIGAVLHMEGAEPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVRE 157 (313)
T ss_pred hhcccHHHHHHHhhcCceeEEEeccCcccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHH
Confidence 34455667777776666654544445556666678888899998888652 23444442221222211 2677777
Q ss_pred HHHcCC----------CHHHHHHHHHhcCCeEEec-cCcCceecc--cCCHHHHHHHhcCCC
Q psy15050 236 ADKYRK----------SPAQVVLRYLVFLMVCRLS-SGEHKVFVE--QGSPTEEHAIQSYSH 284 (323)
Q Consensus 236 a~~~~~----------s~aq~al~w~l~~~~v~i~-~~~~~~~~~--~Lt~~e~~~l~~~~~ 284 (323)
+.++|+ +..+ ++.+ +.-.++.. ||+.+..+- .|+++++++|.+-.-
T Consensus 158 ~N~LgIiiDlSH~s~kt~~D-vl~~--s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gG 216 (313)
T COG2355 158 MNELGIIIDLSHLSDKTFWD-VLDL--SKAPVVASHSNARALVDHPRNLSDEQLKAIAETGG 216 (313)
T ss_pred HHhcCCEEEecccCCccHHH-HHhc--cCCceEEecCCchhccCCCCCCCHHHHHHHHhcCC
Confidence 788875 3333 3444 33334444 777755443 799999999986544
No 226
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.47 E-value=1.8e+02 Score=26.23 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHH-----HHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 142 EETWRGMEKCVEKGLAKSIGVSNFNSG-----QIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 142 ~~~~~aL~~l~~~GkIr~iGvSn~~~~-----~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
...-.-|++|++.| +-||.||++- ++++.++..+.. +.++-+++..|+++|+-.++|
T Consensus 95 ~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 95 RDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp --HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 45556778888876 5699999853 355666665531 233557788888888877776
No 227
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.47 E-value=3.6e+02 Score=20.52 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=29.9
Q ss_pred ecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEec
Q psy15050 162 VSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 162 vSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~s 212 (323)
.+..+.+.+..++......+.++=..-+......++.++++++||++..+.
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~ 86 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMS 86 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeC
Confidence 445566666666654312223322222333345788999999999998763
No 228
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=21.46 E-value=4e+02 Score=24.18 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCH------------HHHHHHHHhCCCcceEeeecccCCcCh--HHHHHHHHhcCc
Q psy15050 141 IEETWRGMEKCVEKGLAKSIGVSNFNS------------GQIKRILDCAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNI 206 (323)
Q Consensus 141 ~~~~~~aL~~l~~~GkIr~iGvSn~~~------------~~l~~l~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gI 206 (323)
....++...+++++|++-.||=+.++. +.+..+++.+.---..+|+.--..... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 456677888999999998888666652 124455555543223445443333332 578888999887
No 229
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.40 E-value=3.7e+02 Score=20.38 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEe
Q psy15050 143 ETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAY 211 (323)
Q Consensus 143 ~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~ 211 (323)
..+..|--+++.|++- +..+.+.+.+.......++.--+.+. +...++..+|+..+|.++.+
T Consensus 4 k~l~lLglA~rAGklv------~G~~~v~~aik~gk~~lVI~A~D~s~-~~kkki~~~~~~~~vp~~~~ 65 (104)
T PRK05583 4 KFLNFLGLTKKAGKLL------EGYNKCEEAIKKKKVYLIIISNDISE-NSKNKFKNYCNKYNIPYIEG 65 (104)
T ss_pred HHHHHHHHHHHhCCee------ecHHHHHHHHHcCCceEEEEeCCCCH-hHHHHHHHHHHHcCCCEEEe
Confidence 4567777788888882 33456667777666655554433332 22467888889889888765
No 230
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.36 E-value=5.5e+02 Score=23.12 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q psy15050 95 VVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRIL 174 (323)
Q Consensus 95 i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~~l~~l~ 174 (323)
-+..+-+.|.++|+++|++-..-.|... | ...+.+++.+.+... ..++..++. -....+++++
T Consensus 21 ~K~~i~~~L~~~Gv~~IEvGs~~~~~~~------p-------~~~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~ 83 (274)
T cd07938 21 DKIELIDALSAAGLRRIEVTSFVSPKWV------P-------QMADAEEVLAGLPRR---PGVRYSALV-PNLRGAERAL 83 (274)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccc------c-------ccCCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHH
Confidence 5566777799999999999743222211 0 012234455555442 246667775 4567788888
Q ss_pred HhCCCcceEeeecccCCc------C--------hHHHHHHHHhcCcEEEE
Q psy15050 175 DCAKIKPVNLQIEVHPYL------N--------QRKLIDFCKKHNITVTA 210 (323)
Q Consensus 175 ~~~~~~~~~~q~~~~~~~------~--------~~~l~~~~~~~gI~via 210 (323)
+.. ++...+-+..|..+ . -.+.+++++++|+.+..
T Consensus 84 ~~g-~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 84 AAG-VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred HcC-cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 754 32222222222210 0 14678899999999864
No 231
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=21.13 E-value=31 Score=31.94 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHHcCC-ccEEEecCCC------HH----HHHHHHHhCCCcceEeeecccCC
Q psy15050 139 VSIEETWRGMEKCVEKGL-AKSIGVSNFN------SG----QIKRILDCAKIKPVNLQIEVHPY 191 (323)
Q Consensus 139 ~~~~~~~~aL~~l~~~Gk-Ir~iGvSn~~------~~----~l~~l~~~~~~~~~~~q~~~~~~ 191 (323)
......++-+++|+++|. |..||+-+|= .+ .+.+.... ++++.+..+..+..
T Consensus 201 ~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~-Gl~i~VTELD~~~~ 263 (345)
T COG3693 201 AKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKL-GLPIYVTELDMSDY 263 (345)
T ss_pred HHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhc-CCCceEEEeeeecc
Confidence 445667889999999999 9999987662 11 23334444 66777777766653
No 232
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=20.99 E-value=3.6e+02 Score=20.53 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=30.1
Q ss_pred ecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEec
Q psy15050 162 VSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYS 212 (323)
Q Consensus 162 vSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~s 212 (323)
++..+.+.++.++... ..+.++=.--+......++.++++++||++..+.
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~ 86 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMD 86 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEEC
Confidence 3455566666666532 2333333333333446788899999999998764
No 233
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.98 E-value=8.1e+02 Score=24.14 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CccEEEecCC-C-
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKG-LAKSIGVSNF-N- 166 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~G-kIr~iGvSn~-~- 166 (323)
.+++.+.+.++...++.|+..+ .+..... ..+...+.+-++++++.| .--.++++.. +
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f----------------~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~ 282 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEP----------------TINRKKFQEFCEEIIARNPISVTWGINTRVTD 282 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEeccc----------------ccCHHHHHHHHHHHHhcCCCCeEEEEeccccc
Confidence 4778889999988888887653 2322111 123344556667777776 3334554332 1
Q ss_pred ---HHHHHHHHHhCCCcceEeeecccCCcC--------------hHHHHHHHHhcCcEEEEecCCC
Q psy15050 167 ---SGQIKRILDCAKIKPVNLQIEVHPYLN--------------QRKLIDFCKKHNITVTAYSPLG 215 (323)
Q Consensus 167 ---~~~l~~l~~~~~~~~~~~q~~~~~~~~--------------~~~l~~~~~~~gI~via~spl~ 215 (323)
.+++.+++..+++ ..+.+.+-...+ ..+.+..|+++||.+.+.--+|
T Consensus 283 i~~d~ell~~l~~aG~--~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 283 IVRDADILHLYRRAGL--VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred ccCCHHHHHHHHHhCC--cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 1344455555554 222222222111 2478899999999887655554
No 234
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.93 E-value=6.6e+02 Score=23.13 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------CCHHHHHHHHHhCCCcceEeeecccCCc--C--hHHHHHHHHhcCcE
Q psy15050 141 IEETWRGMEKCVEKGLAKSIGVSN---------FNSGQIKRILDCAKIKPVNLQIEVHPYL--N--QRKLIDFCKKHNIT 207 (323)
Q Consensus 141 ~~~~~~aL~~l~~~GkIr~iGvSn---------~~~~~l~~l~~~~~~~~~~~q~~~~~~~--~--~~~l~~~~~~~gI~ 207 (323)
.....+-++.+++.|.|+.|.+.+ .+.+.++. +...+.. ..+-++.+... . -.+.+..+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~-L~~~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAA-LKTSGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHH-HHHcCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 345667777778888887666654 22233333 3334432 33333333211 1 24678889999999
Q ss_pred EEEecCCCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHHhcCCeEEec---cCcC-ceecccCCHHHHHHH
Q psy15050 208 VTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVVLRYLVFLMVCRLS---SGEH-KVFVEQGSPTEEHAI 279 (323)
Q Consensus 208 via~spl~~G~~~~~~~~~l~~~~l~~ia~~~~~s~aq~al~w~l~~~~v~i~---~~~~-~~~~~~Lt~~e~~~l 279 (323)
+...+++..|. .-+.+.+.+ ..+|+...|+.+.- -.+. ....+.++.++..+|
T Consensus 230 v~~q~vLl~gv-------Nd~~~~l~~------------l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i 286 (321)
T TIGR03822 230 MVSQSVLLRGV-------NDDPETLAA------------LMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQAL 286 (321)
T ss_pred EEEEeeEeCCC-------CCCHHHHHH------------HHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHH
Confidence 99999998874 111122222 24455555654333 2222 344556777776666
No 235
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.90 E-value=4.4e+02 Score=23.76 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=49.8
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcCh--HHHHHHHHhcCcEEEEecCCCC
Q psy15050 148 MEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAYSPLGA 216 (323)
Q Consensus 148 L~~l~~~GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gI~via~spl~~ 216 (323)
|.+..++|+.-.-.........+.+++...+++++++=.+..++..+ ..++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~ 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence 44445557764333345555677777788889999988888887765 4688899999999998877543
No 236
>PRK08123 histidinol-phosphatase; Reviewed
Probab=20.84 E-value=6e+02 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCC
Q psy15050 32 GDVKNAVLAAIDAGYRHIDTAEV 54 (323)
Q Consensus 32 ~~~~~~l~~A~~~Gi~~~DTA~~ 54 (323)
+...+.+++|++.|+..|=.+++
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEecc
Confidence 35689999999999998877766
No 237
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.83 E-value=4.4e+02 Score=22.84 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCccEEEecCCCH-HHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEE
Q psy15050 144 TWRGMEKCVEKGLAKSIGVSNFNS-GQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTA 210 (323)
Q Consensus 144 ~~~aL~~l~~~GkIr~iGvSn~~~-~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via 210 (323)
..+.+++++++.-=..||..+... ++++.+.+. +-++.+ +|.... +++++|++++|.++.
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a-GA~Fiv-----sP~~~~-~vi~~a~~~~i~~iP 113 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA-GAQFIV-----SPGLTP-PLLKAAQEGPIPLIP 113 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc-CCCEEE-----CCCCCH-HHHHHHHHcCCCEeC
Confidence 445556665553335688877755 566666654 334443 443333 999999999998873
No 238
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=2e+02 Score=22.69 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhCC-CcceEeeecccCCcChHHHHHHHHhcCcEEEEecC
Q psy15050 166 NSGQIKRILDCAK-IKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 166 ~~~~l~~l~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~sp 213 (323)
+++.++++++.+. +.+.++-..-.......++.+.|++.||++-.++.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 3456666666654 23333333344444568999999999999966653
No 239
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=20.60 E-value=77 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.3
Q ss_pred HHHHHHHHcCCCEEeC
Q psy15050 36 NAVLAAIDAGYRHIDT 51 (323)
Q Consensus 36 ~~l~~A~~~Gi~~~DT 51 (323)
..+...++.|||+||-
T Consensus 30 ~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 30 WSIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHHTT--EEEE
T ss_pred HhHHHHHhccCceEEE
Confidence 5789999999999995
No 240
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.57 E-value=4.9e+02 Score=27.03 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc--CCccEEEecCCCHH
Q psy15050 91 EPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEK--GLAKSIGVSNFNSG 168 (323)
Q Consensus 91 ~~~~i~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~--GkIr~iGvSn~~~~ 168 (323)
+-+.+++-++.....-.....-+++|+..+. -....+++|-+..++ +.+.+|.++|....
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~------------------Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHM------------------LTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHh------------------cCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 4455666665554433334556888875532 123566777777777 89999999998776
Q ss_pred HHHHHHHhC
Q psy15050 169 QIKRILDCA 177 (323)
Q Consensus 169 ~l~~l~~~~ 177 (323)
-+..+.+.+
T Consensus 167 LlpTIrSRC 175 (700)
T PRK12323 167 IPVTVLSRC 175 (700)
T ss_pred hhhHHHHHH
Confidence 666776665
No 241
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.51 E-value=6.4e+02 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHHhCCCceeEEE
Q psy15050 90 FEPDMVVQACQNSCKKLGLDYVDLYL 115 (323)
Q Consensus 90 ~~~~~i~~~ve~SL~rLg~d~iDl~~ 115 (323)
++.+.-.+-++..+..+|+++|++-.
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~ 41 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVAS 41 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 45554444455556899999999864
No 242
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=20.50 E-value=6.8e+02 Score=23.06 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHcCCCEEeCCC--------CC--CC-----hHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHH
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAE--------VY--QT-----EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMV 95 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~--------~Y--g~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i 95 (323)
.++..++.+.+.+.|+..||--- .| |+ -+.+.+.+++.-+. ..+++-|+.|+-....+.+..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~---~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA---VPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh---cCCCcceEEEEECCCCCchHH
Confidence 36677777888889999999321 13 31 33445555442111 112467888864322222222
Q ss_pred HHHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHH
Q psy15050 96 VQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF-NSGQIKRIL 174 (323)
Q Consensus 96 ~~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~l~ 174 (323)
..+-+.|+..|+ |.+-+|.-....+ +.... --|+...++++.-.|--||..+. +++.+++++
T Consensus 151 -~~~a~~l~~~Gv---d~i~Vh~Rt~~~~-----------y~g~~--~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 151 -FEIADAVQQAGA---TELVVHGRTKEDG-----------YRAEH--INWQAIGEIRQRLTIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred -HHHHHHHHhcCC---CEEEECCCCCccC-----------CCCCc--ccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHH
Confidence 345555666774 6677885432100 00000 02677777887777888998887 557888888
Q ss_pred HhCCC
Q psy15050 175 DCAKI 179 (323)
Q Consensus 175 ~~~~~ 179 (323)
+..+.
T Consensus 214 ~~~g~ 218 (312)
T PRK10550 214 AITGC 218 (312)
T ss_pred hccCC
Confidence 76655
No 243
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.27 E-value=2.9e+02 Score=27.69 Aligned_cols=70 Identities=6% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCcceEeeecccCCcChHHHHHHHHhcCcEEEEecC
Q psy15050 141 IEETWRGMEKCVEK-GLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSP 213 (323)
Q Consensus 141 ~~~~~~aL~~l~~~-GkIr~iGvSn~~~~~l~~l~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gI~via~sp 213 (323)
.-+.+++|..+++. ++|.-||+.|.. ..+..+.+..++ .+.++.|+....-...+..+++.|+.++.-..
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~--~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNL--DIVQRSYVTEEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEECCh
Confidence 35678888888774 788888887775 445555555555 34455555444446778888888888876443
No 244
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=20.13 E-value=5.1e+02 Score=23.03 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCceeEEEeecccccCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q psy15050 97 QACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168 (323)
Q Consensus 97 ~~ve~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~l~~~GkIr~iGvSn~~~~ 168 (323)
+.+++.++.++- ..|-++||---+...+...|....-+.......++.+.++.+.+.++|..+.|+.+++.
T Consensus 186 ~~~~~~~~~~~~-~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e~~~~l~~l~~~~~vvg~di~E~~P~ 256 (277)
T PF00491_consen 186 AVLEEILEALGS-GTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRELLQLLRALARSGKVVGLDIVEYNPD 256 (277)
T ss_dssp HHHHHHHHHHTT-STSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHHHHHHHHHHHHHSEEEEEEEE-B-GG
T ss_pred hHHHHHHHHHhc-CCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHHHHHHHHHHcccCCeEEEEEEEECCC
Confidence 347777888852 34567777421111111111111111235678999999999989999999999988864
No 245
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=20.03 E-value=4.9e+02 Score=22.71 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHcCCCEEeCCCCCC----ChHHHHHHHHhHhhcCCCCCCcEEEEeccCCCCCChHHHHHHHHHHHHHh
Q psy15050 31 SGDVKNAVLAAIDAGYRHIDTAEVYQ----TEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKL 106 (323)
Q Consensus 31 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~ve~SL~rL 106 (323)
+++..++.+.+.++|..|+=|+..|+ +.+.+. .+++. -+++ +.-|....-.+.+...+-++.--.|+
T Consensus 135 ~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~-~m~~~------~~~~--~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 135 DEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVK-LMRET------VGPR--VGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHH-HHHHH------hCCC--ceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 37788999999999999999999985 233332 23332 1122 22333222346777777777766777
Q ss_pred CCC
Q psy15050 107 GLD 109 (323)
Q Consensus 107 g~d 109 (323)
|+.
T Consensus 206 GtS 208 (221)
T PRK00507 206 GTS 208 (221)
T ss_pred ccC
Confidence 765
Done!