RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15050
(323 letters)
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 312 bits (802), Expect = e-107
Identities = 128/287 (44%), Positives = 167/287 (58%), Gaps = 35/287 (12%)
Query: 4 AIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGE 63
A+ + LNNG EIPA+GLGTWQ AV AA++ GYR IDTAE+Y E ++GE
Sbjct: 1 AMKTKVTLNNGVEIPAIGLGTWQIGDDE-WAVRAVRAALELGYRLIDTAEIYGNEEEVGE 59
Query: 64 AIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK 123
AIKE + REELFITTKVW + D ++A + S K+LGLDYVDLYLIHWP K
Sbjct: 60 AIKE----SGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNK 115
Query: 124 GKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVN 183
V IEETW+ +E+ V++GL ++IGVSNF ++ +L AK+KP
Sbjct: 116 --------------YVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAV 161
Query: 184 LQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSP 243
QIE HPYL Q +L+ FC++H I V AYSPL L+++ VL EIA KY K+P
Sbjct: 162 NQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK------GGKLLDNPVLAEIAKKYGKTP 215
Query: 244 AQVVLRYLVFLMVCRLSSGEHKVFVEQGSPTEEHAIQSYSHLPGELS 290
AQV LR+ + + V V S T E ++ + ELS
Sbjct: 216 AQVALRWHI----------QRGVIVIPKSTTPERIRENLAAFDFELS 252
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 260 bits (667), Expect = 3e-86
Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 40/265 (15%)
Query: 8 TIQLN-NGQEIPALGLGTWQ---GEPGSGDVKNAVLAAIDAGYRHIDTAEVY---QTEGD 60
L G ++ LGLGTWQ G + AV AA+DAG IDTA+VY ++E
Sbjct: 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEEL 60
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITH-----FEPDMVVQACQNSCKKLGLDYVDLYL 115
+GEA+KE+ REE+FI TKV P+ + +A + S K+LG DY+DLYL
Sbjct: 61 LGEALKERG-----PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYL 115
Query: 116 IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175
+HWP + + IEET R +E+ V++G ++IGVSNF++ Q++ L
Sbjct: 116 LHWP---------------DPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALA 160
Query: 176 CAKIKPVNLQIEVHPYLNQ--RKLIDFCKKHNITVTAYSPL------GAPWTNPDKPLLI 227
A + P Q+E + Q +L+ +C++H I V AYSPL G P
Sbjct: 161 AAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGD 220
Query: 228 NDDVLKEIADKYRKSPAQVVLRYLV 252
+ LKEIA+K+ +PAQV LR+L+
Sbjct: 221 LLEALKEIAEKHGVTPAQVALRWLL 245
>gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional.
Length = 275
Score = 202 bits (516), Expect = 1e-63
Identities = 97/248 (39%), Positives = 140/248 (56%), Gaps = 30/248 (12%)
Query: 4 AIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGE 63
A I+L +G +P LGLG WQ + +V A+ A++ GYR IDTA +Y+ E +G+
Sbjct: 2 ANPTVIKLQDGNVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGK 59
Query: 64 AIKEKINSGDIKREELFITTKVWIT-HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAI 122
A+KE + REELFITTK+W H P +A + S KKL LDYVDLYL+HWP
Sbjct: 60 ALKE----ASVAREELFITTKLWNDDHKRPR---EALEESLKKLQLDYVDLYLMHWPVPA 112
Query: 123 KGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPV 182
V E W+GM + ++GL KSIGV NF ++R++D + PV
Sbjct: 113 IDHYV---------------EAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPV 157
Query: 183 NLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKS 242
QIE+HP + QR+L + H I ++SPL + + V++++ADKY K+
Sbjct: 158 INQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKG-----VFDQKVIRDLADKYGKT 212
Query: 243 PAQVVLRY 250
PAQ+V+R+
Sbjct: 213 PAQIVIRW 220
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 196 bits (499), Expect = 3e-61
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 43/256 (16%)
Query: 19 ALGLGTWQ--GEPGSGD-VKNAVLAAIDAGYRHIDTAEVY---QTEGDIGEAIKEKINSG 72
LGLGTW G S + + AA++AG IDTAEVY +E +GEA+K+ +
Sbjct: 1 RLGLGTWSLGGLAISKEEALELLRAALEAGINLIDTAEVYGDGPSEELLGEALKKYV--- 57
Query: 73 DIKREELFITTKVWIT-----HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDV 127
R+E+FI TKV + + ++ + S K+LG DY+DLYL+HWP
Sbjct: 58 --PRDEVFIATKVGPPGPPPDDGSRENIKKSIEESLKRLGTDYLDLYLLHWPD------- 108
Query: 128 HDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQIE 187
++ IEET +E+ ++G + IGVSNF+ Q++ L+ K+ V +Q+E
Sbjct: 109 ---------PSLPIEETLEALEELKKEGKIRHIGVSNFSVEQLREALEHGKVPIVVVQVE 159
Query: 188 VHPY--LNQRKLIDFCKKHNITVTAYSPLGA---------PWTNPDKPLLINDDVLKEIA 236
L + L++ C+++ I + AYSPLG + +VLKE+A
Sbjct: 160 YSLLRRLAEEGLLELCQENGIGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKELA 219
Query: 237 DKYRKSPAQVVLRYLV 252
++ SPAQ+ LR+ +
Sbjct: 220 KEHGVSPAQLALRWAL 235
>gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional.
Length = 267
Score = 194 bits (495), Expect = 1e-60
Identities = 91/236 (38%), Positives = 134/236 (56%), Gaps = 34/236 (14%)
Query: 17 IPALGLGTW--QGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDI 74
IPA GLGT+ + + V ++V A++ GYR IDTA++Y E +G+AI E SG +
Sbjct: 3 IPAFGLGTFRLKDQV----VIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAE---SG-V 54
Query: 75 KREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEG 134
R+ELFITTK+WI + D ++ + + S +KL DYVDL LIHWP
Sbjct: 55 PRDELFITTKIWIDNLAKDKLIPSLKESLQKLRTDYVDLTLIHWP--------------S 100
Query: 135 EHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC--AKIKPVNLQIEVHPYL 192
++ VS+EE + + + ++GL + IG+SNF +K+ + A+ N QIE+ PYL
Sbjct: 101 PNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATN-QIELSPYL 159
Query: 193 NQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVVL 248
RK++ F K+H I VT+Y L K L D V+ IA K+ +PAQV+L
Sbjct: 160 QNRKVVAFAKEHGIHVTSYMTLAY-----GKVL--KDPVIARIAAKHNATPAQVIL 208
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 148 bits (375), Expect = 3e-42
Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 69/284 (24%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA-----VLAAIDAGYRHIDTAEVY---QTEGDIGE 63
+G ++ LGLGT + D + A + AA+DAG DTA+VY ++E +GE
Sbjct: 8 RSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGE 67
Query: 64 AIKEKINSGDIKREELFITTKV----------WITHFEPDMVVQACQNSCKKLGLDYVDL 113
A+KE+ R+++ I TKV + D + +A + S K+LG DY+DL
Sbjct: 68 ALKERGR-----RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDL 122
Query: 114 YLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRI 173
Y +H P IEET +++ V +G + IGVSN+++ QI
Sbjct: 123 YQLHRPDP----------------ETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEA 166
Query: 174 LDCAKIKPVNLQIEVHPY--LNQRK---LIDFCKKHNITVTAYSPL------GAPWTNPD 222
L A +LQ E Y L + L+ C++ I + AYSPL G P+
Sbjct: 167 LAVA-APIDSLQPE---YNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPE 222
Query: 223 KPLLIND---------------DVLKEIADKYRKSPAQVVLRYL 251
L+E+A + +PAQV L ++
Sbjct: 223 GSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWV 266
>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 73.5 bits (181), Expect = 1e-14
Identities = 78/314 (24%), Positives = 123/314 (39%), Gaps = 80/314 (25%)
Query: 13 NGQEIPALGLGTWQG---EPGSGDVKNA---VLAAIDAGYRHIDTAEVYQT---EGDIGE 63
G E+ LG G + E GS D +NA + AI+ G +IDTA Y E +G+
Sbjct: 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGK 68
Query: 64 AIKEKINSGDIKREELFITTKV--WITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFA 121
A+K+ RE++ + TK+ W DM + +KLG DY+D YLIH
Sbjct: 69 ALKDG------YREKVKLATKLPSWPVKDREDME-RIFNEQLEKLGTDYIDYYLIH---G 118
Query: 122 IKGKDVHDTSFEGEHNNVSIEETWRGMEK--CVE-------KGLAKSIGVSNFNS-GQIK 171
+ ETW +E+ + +G ++ G S S K
Sbjct: 119 LNT------------------ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFK 160
Query: 172 RILDCAKIKPVNLQIEVHPYLNQ-----RKLIDFCKKHNITVTAYSPL---GAPWTNPDK 223
I+D V LQ Y++Q + + + + + PL G + P+K
Sbjct: 161 EIVDAYPWDFVQLQYN---YIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEK 217
Query: 224 PLLINDDVLKEIADKY--RKSPAQVVLRYLV-FLMVCRLSSG--------EH-KVFVEQG 271
L+E+ ++SPA+ LRYL+ V + SG E+ K+ E
Sbjct: 218 --------LEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELE 269
Query: 272 SPTEEHAIQSYSHL 285
E +Q +
Sbjct: 270 PSLTEEELQILEKV 283
>gnl|CDD|227322 COG4989, COG4989, Predicted oxidoreductase [General function
prediction only].
Length = 298
Score = 70.1 bits (172), Expect = 1e-13
Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 52/273 (19%)
Query: 8 TIQLNN-GQEIPALGLGTWQGEPGSGDVKNAVLA-----AIDAGYRHIDTAEVY---QTE 58
I L G E + LG W+ ++ L A++ G D A++Y Q E
Sbjct: 3 RITLAPDGLEFSRIVLGYWR--LNDWNMSARELLSFIETALELGITTFDHADIYGGYQCE 60
Query: 59 GDIGEAIKEKINSGDIKREELFITTKVWI----------THFE--PDMVVQACQNSCKKL 106
GEA+K RE++ I +K I H++ + ++++ + S L
Sbjct: 61 ALFGEALKLAPG----LREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINL 116
Query: 107 GLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN 166
DY+DL LIH P D + EE + G + GVSNFN
Sbjct: 117 KTDYLDLLLIHRP---------DPLMDA-------EEVAEAFTHLHKSGKVRHFGVSNFN 160
Query: 167 SGQIKRILDCAKIKPVNLQIEVHPYLNQRKL----IDFCKKHNITVTAYSPL--GAPWTN 220
Q + + V Q+E+ P + L +D+C++ + A+SPL G +
Sbjct: 161 PAQFELLQSRLPFTLVTNQLELSPL-HTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219
Query: 221 PDKPLLINDDVLKEIADKY-RKSPAQVVLRYLV 252
DK + VL IA++Y S V + +L+
Sbjct: 220 DDKFQRLR-KVLDRIAEEYGAVSITAVAIAWLL 251
>gnl|CDD|236676 PRK10376, PRK10376, putative oxidoreductase; Provisional.
Length = 290
Score = 62.3 bits (152), Expect = 4e-11
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 52/255 (20%)
Query: 20 LGLGTWQ-------GEPGSGDVKNAVL-AAIDAGYRHIDTAEVYQ---TEGDIGEAIKEK 68
LG G Q G P D AVL A+ G HIDT++ Y T I EA+
Sbjct: 20 LGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP- 78
Query: 69 INSGDIKREELFITTKV---------WITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWP 119
++L I TKV W+ F P + +A ++ + LGLD +D+
Sbjct: 79 ------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVV----N 128
Query: 120 FAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKI 179
+ G D H + EG SIEE + + +GL + IG+SN Q+ + KI
Sbjct: 129 LRLMG-DGHGPA-EG-----SIEEPLTVLAELQRQGLVRHIGLSNVTPTQVA---EARKI 178
Query: 180 KPVNLQIEVHPYLNQR---KLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIA 236
+ + ++ H L R LID + I + PLG P + L ++A
Sbjct: 179 AEI-VCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG--FTP-----LQSSTLSDVA 230
Query: 237 DKYRKSPAQVVLRYL 251
+P QV L +L
Sbjct: 231 ASLGATPMQVALAWL 245
>gnl|CDD|213602 TIGR01293, Kv_beta, voltage-dependent potassium channel beta
subunit, animal. This model describes the conserved
core region of the beta subunit of voltage-gated
potassium (Kv) channels in animals. Amino-terminal
regions differ substantially, in part by alternative
splicing, and are not included in the model. Four beta
subunits form a complex with four alpha subunit
cytoplasmic (T1) regions, and the structure of the
complex is solved. The beta subunit belongs to a family
of NAD(P)H-dependent aldo-keto reductases, binds NADPH,
and couples voltage-gated channel activity to the redox
potential of the cell. Plant beta subunits and their
closely related bacterial homologs (in Deinococcus
radiudurans, Xylella fastidiosa, etc.) appear more
closely related to each other than to animal forms.
However, the bacterial species lack convincing
counterparts the Kv alpha subunit and the Kv beta
homolog may serve as an enzyme. Cutoffs are set for this
model such that yeast and plant forms and bacterial
close homologs score between trusted and noise cutoffs.
Length = 317
Score = 61.1 bits (148), Expect = 1e-10
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 40/222 (18%)
Query: 13 NGQEIPALGLGTWQ--GEPGSGDVKNAVLA-AIDAGYRHIDTAEVY---QTEGDIGEAIK 66
+G + LGLGTW G S ++ +L A + G DTAEVY + E +G +K
Sbjct: 7 SGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILK 66
Query: 67 EKINSGDIKREELFITTKV-WITHFEPDM------VVQACQNSCKKLGLDYVDLYLIHWP 119
+K +R ITTK+ W E + +++ + S ++L L+YVD+ + P
Sbjct: 67 KK----GWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRP 122
Query: 120 FAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK- 178
N +EET R M + +G+A G S ++S +I A+
Sbjct: 123 ----------------DPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQ 166
Query: 179 ---IKPVNLQIEVHPYLNQR---KLIDFCKKHNITVTAYSPL 214
I P+ Q E H + ++ +L + K + +SPL
Sbjct: 167 FNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPL 208
>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
Length = 346
Score = 60.6 bits (147), Expect = 2e-10
Identities = 67/239 (28%), Positives = 101/239 (42%), Gaps = 52/239 (21%)
Query: 16 EIPALGLGTWQ-GEPGS-GDVKNAVLAAIDAGYRHIDTAEVYQ----------TEGDIGE 63
E+ LGLGT GE S D + A+ G ID AE+Y TE IG
Sbjct: 12 EVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGN 71
Query: 64 AIKEKINSGDIKREELFITTKVW------ITHFEPDMVV------QACQNSCKKLGLDYV 111
+ ++ + RE+L I +KV P+ + +A +S K+L DY+
Sbjct: 72 WLAKRGS-----REKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYL 126
Query: 112 DLYLIHWP------FAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNF 165
DLY +HWP F G D++ VS+ ET + + G + IGVSN
Sbjct: 127 DLYQVHWPQRPTNCFGKLGYSWTDSA-----PAVSLLETLDALAEQQRAGKIRYIGVSNE 181
Query: 166 NSGQIKRILDCAKI----KPVNLQIEVHPY--LNQR---KLIDFCKKHNITVTAYSPLG 215
+ + R L A+ + V +Q +PY LN+ L + + + + AYS L
Sbjct: 182 TAFGVMRYLHLAEKHDLPRIVTIQ---NPYSLLNRSFEVGLAEVSQYEGVELLAYSCLA 237
>gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase;
Provisional.
Length = 346
Score = 57.7 bits (139), Expect = 2e-09
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 13 NGQEIPALGLGTWQ--GEPGSGDVKNAVL-AAIDAGYRHIDTAEVY-----QTEGDIGEA 64
+G +PAL LG W G + + + A+L A D G H D A Y E + G
Sbjct: 21 SGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRL 80
Query: 65 IKEKINSGDIKREELFITTK----VWITHF----EPDMVVQACQNSCKKLGLDYVDLYLI 116
++E + R+EL I+TK +W + ++ + S K++GL+YVD++
Sbjct: 81 LREDFAA---YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYS 137
Query: 117 HWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC 176
H N +EET + V+ G A +G+S+++ + +++++
Sbjct: 138 H----------------RVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVEL 181
Query: 177 AKIKPVNLQIEVHPY------LNQRKLIDFCKKHNITVTAYSPL 214
+ + L I Y +++ L+D + + + A++PL
Sbjct: 182 LREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPL 225
>gnl|CDD|178198 PLN02587, PLN02587, L-galactose dehydrogenase.
Length = 314
Score = 41.7 bits (98), Expect = 3e-04
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 39/222 (17%)
Query: 12 NNGQEIPALGLGTWQGEP-GS--GDVKN-----AVLAAIDAGYRHIDTAEVY---QTEGD 60
+ G ++ ++G G P GS G V +V A G DT+ Y +E
Sbjct: 6 STGLKVSSVGFG---ASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKV 62
Query: 61 IGEAIKEKINSGDIKREELFITTK----VWITHFEPDMVVQACQNSCKKLGLDYVDLYLI 116
+G+A+K + I RE+ ++TK F + V ++ S +L LDYVD ++
Sbjct: 63 LGKALK----ALGIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVD--IL 116
Query: 117 HWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC 176
H HD F G + + + ET ++K E G + IG++ +LD
Sbjct: 117 H---------CHDIEF-GSLDQI-VNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDR 165
Query: 177 AKIKPVNLQIE-VHPYLNQRKLID---FCKKHNITVTAYSPL 214
V++ + H LN L D + K + V + SPL
Sbjct: 166 VPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPL 207
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 30.6 bits (70), Expect = 0.89
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 156 LAKSIGVSNFNSGQ-IKRILDCAKIKPVNL-QIEVHPYLNQRKLIDFCKKHNITV 208
+ G + G +R+L+ + N+ QI + + N + +++ ++ +TV
Sbjct: 119 TRDTDGGGELSHGTPFRRLLEDGNVDGENIVQIGIRGFWNSPEYVEYAREQGVTV 173
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 30.6 bits (70), Expect = 0.94
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 195 RKLIDFCKKHNITV---TAYS 212
+++DF KK++I V AYS
Sbjct: 189 EEVVDFAKKYDIIVCHDAAYS 209
>gnl|CDD|163260 TIGR03432, yjhG_yagF, putative dehydratase, YjhG/YagF family. This
homolog of dihydroxy-acid dehydratases has an odd,
sparse distribution. Members are found in two
Acidobacteria, two Planctomycetes, Bacillus clausii
KSM-K16, and (in two copies each) in strains K12-MG1655
and W3110 of Escherichia coli. The local context is not
well conserved, but a few members are adjacent to
homologs of the gluconate:H+ symporter (see TIGR00791)
[Unknown function, Enzymes of unknown specificity].
Length = 640
Score = 30.5 bits (69), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 43 DAGYRHIDTAEVYQTEGDIGEAIK-EKINSGDI 74
D YRH A V+ +E AIK KI +GD+
Sbjct: 458 DGVYRHTGPARVFSSEKSAIAAIKHGKIEAGDV 490
>gnl|CDD|184865 PRK14863, PRK14863, bifunctional regulator KidO; Provisional.
Length = 292
Score = 29.9 bits (67), Expect = 1.7
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 92 PDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKC 151
PD V + S +++G++ D L+H P + G G W ++
Sbjct: 85 PDFVEAEARASLRRMGVERADAILVHSPTELFGP-------HGAA-------LWERLQAL 130
Query: 152 VEKGLAKSIGVSNFNS----GQIKRILDCAKIKPVNLQIEVHPYLNQRKLID 199
++GL IGVS S G +R KP LQ L+QR L D
Sbjct: 131 KDQGLFAKIGVSAHASDDPVGVARR------FKPDILQAPAS-LLDQRLLAD 175
>gnl|CDD|236189 PRK08211, PRK08211, putative dehydratase; Provisional.
Length = 655
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 43 DAGYRHIDTAEVYQTEGDIGEAIK-EKINSGDI 74
D YRH A V+ +E AIK +I +GDI
Sbjct: 464 DGVYRHTGRARVFTSEKSAIAAIKHGEIKAGDI 496
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 29.4 bits (66), Expect = 2.2
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 27 GEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKE 67
G P S +VKN + +A YR I+ A V GDIG AI+E
Sbjct: 144 GTP-SDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQE 183
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.
Length = 358
Score = 28.9 bits (66), Expect = 3.4
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 33 DVKNAVLAAIDAGYRHIDTAEVYQTEG-----DIGEAIKEKINSG 72
++ AV + GYR TA++ + G ++G+AI + G
Sbjct: 317 AIEAAVEKVLAQGYR---TADIAEGGGKVSTSEMGDAILAALAEG 358
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 29.4 bits (65), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 207 TVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPA 244
TV PL A W++P K I +VL+ I+D Y +P
Sbjct: 1340 TVIPALPLAASWSDPSK---IPQEVLRIISDYYPDAPG 1374
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 28.6 bits (64), Expect = 5.1
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 189 HPYLNQRKLIDFCKKHNIT-VTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVV 247
H YL R ++ +KH IT + A PL A D P L+ + + P +
Sbjct: 235 HDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPS-LRYLTNSGGAMPRATL 293
Query: 248 --LRYL-----VFLM 255
LR +FLM
Sbjct: 294 SRLRSFLPNARLFLM 308
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 28.2 bits (63), Expect = 6.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 35 KNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIK 75
N V AA DA Y I G+IG+AI+E I S +K
Sbjct: 107 DNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVK 147
>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase.
Length = 357
Score = 28.2 bits (63), Expect = 6.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 119 PFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGV 162
P + G+ V SF G S++ET +E C EKGL I V
Sbjct: 286 PMLMLGRKVITGSFIG-----SMKETEEMLEFCKEKGLTSMIEV 324
>gnl|CDD|184501 PRK14093, PRK14093,
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase;
Provisional.
Length = 479
Score = 28.2 bits (63), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 221 PDKPLLINDDVLKEIADKYR----KSPAQVV 247
D PLL+ DDVL + D R + A+V+
Sbjct: 81 ADAPLLVVDDVLAALRDLGRAARARLEAKVI 111
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 28.1 bits (63), Expect = 7.6
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 4 AIAPTIQLNNGQ--EIPALGLGTWQGEPGS---------GDVKNAVLAAIDAGYRHIDTA 52
A+ P L + + +IP L + W+GEPG G + ++L A++ + + T
Sbjct: 65 AVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTD 124
Query: 53 EV 54
Sbjct: 125 ND 126
>gnl|CDD|200557 cd10931, CE4_u7, Putative catalytic domain of uncharacterized
bacterial proteins from the carbohydrate esterase 4
superfamily. This family corresponds to a group of
uncharacterized bacterial proteins with high sequence
similarity to the catalytic domain of the six-stranded
barrel rhizobial NodB-like proteins, which remove
N-linked or O-linked acetyl groups from cell wall
polysaccharides and belong to the larger carbohydrate
esterase 4 (CE4) superfamily.
Length = 224
Score = 27.6 bits (62), Expect = 8.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 190 PYLNQRKLIDFCKKHNIT------VTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
PY L+D KK+ + YSP + + P + ++KEIAD+
Sbjct: 12 PYDTFDWLMDLEKKYGVRSTFFFLAGDYSPYDDGNYSYNDPKIR--SLIKEIADRG 65
>gnl|CDD|193505 cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an
amidohydrolase. Peptidase M20 family, beta-alanine
synthase (bAS; N-carbamoyl-beta-alanine amidohydrolase
and beta-ureidopropionase; EC 3.5.1.6) subfamily. bAS is
an amidohydrolase and is the final enzyme in the
pyrimidine catabolic pathway, which is involved in the
regulation of the cellular pyrimidine pool. The bAS
catalyzes the irreversible hydrolysis of the
N-carbamylated beta-amino acids to beta-alanine or
aminoisobutyrate under the release of carbon dioxide and
ammonia. Also included in this subfamily is allantoate
amidohydrolase (allantoate deiminase), which catalyzes
the conversion of allantoate to (S)-ureidoglycolate, one
of the crucial alternate steps in purine metabolism. It
is possible that these two enzymes arose from the same
ancestral peptidase that evolved into two structurally
related enzymes with distinct catalytic properties and
biochemical roles within the cell. Yeast requires
beta-alanine as a precursor of pantothenate and coenzyme
A biosynthesis, but generates it mostly via degradation
of spermine. Disorders in pyrimidine degradation and
beta-alanine metabolism caused by beta-ureidopropionase
deficiency (UPB1 gene) in humans are normally associated
with neurological disorders.
Length = 399
Score = 27.8 bits (63), Expect = 8.4
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 42 IDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQN 101
+D R D A + I A +E + E+ + F+P++V A +
Sbjct: 279 LDI--RSPDDAVLDALVAAIRAAAEEIAARRGV-EVEIERLSDSPPVPFDPELV-AALEA 334
Query: 102 SCKKLGLDYVDLY 114
+ + LGL Y L
Sbjct: 335 AAEALGLSYRRLP 347
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,473,455
Number of extensions: 1586443
Number of successful extensions: 1706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1662
Number of HSP's successfully gapped: 36
Length of query: 323
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 226
Effective length of database: 6,635,264
Effective search space: 1499569664
Effective search space used: 1499569664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)