RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15050
(323 letters)
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase;
HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB:
1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A*
3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A*
1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Length = 331
Score = 416 bits (1072), Expect = e-147
Identities = 114/262 (43%), Positives = 162/262 (61%), Gaps = 11/262 (4%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGS-GDVKNAVLAAIDAGYRHIDTAEVYQTEG 59
M ++LN+G +P LG GT+ AI+AG+RHID+A +Y E
Sbjct: 1 MDSKQ-QCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEE 59
Query: 60 DIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWP 119
+G AI+ KI G +KRE++F T+K+W T P++V A +NS KK LDYVDLYLIH P
Sbjct: 60 QVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSP 119
Query: 120 FAIK-GKDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC 176
++K G+++ T G+ + V + TW MEKC + GLAKSIGVSNFN Q++ IL+
Sbjct: 120 MSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNK 179
Query: 177 A--KIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP----WTNPDKPLLINDD 230
K KPV Q+E HPY N+ KL+DFCK +I + AYS LG+ W +P+ P+L+ D
Sbjct: 180 PGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYSALGSQRDKRWVDPNSPVLLEDP 239
Query: 231 VLKEIADKYRKSPAQVVLRYLV 252
VL +A K++++PA + LRY +
Sbjct: 240 VLCALAKKHKRTPALIALRYQL 261
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 415 bits (1068), Expect = e-147
Identities = 113/262 (43%), Positives = 161/262 (61%), Gaps = 11/262 (4%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGS-GDVKNAVLAAIDAGYRHIDTAEVYQTEG 59
M I+ + LN+G IP LG GT E + +V A AID G+RH D+A +Y+ E
Sbjct: 1 MDS-ISLRVALNDGNFIPVLGFGTTVPEKVAKDEVIKATKIAIDNGFRHFDSAYLYEVEE 59
Query: 60 DIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWP 119
++G+AI+ KI G +KRE++F T+K+W T P++V + + K LDYVDLY+IH+P
Sbjct: 60 EVGQAIRSKIEDGTVKREDIFYTSKLWSTFHRPELVRTCLEKTLKSTQLDYVDLYIIHFP 119
Query: 120 FAIK-GKDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC 176
A++ G G+ V I +TW MEKC + GLAKSIGVSNFN Q++RIL+
Sbjct: 120 MALQPGDIFFPRDEHGKLLFETVDICDTWEAMEKCKDAGLAKSIGVSNFNCRQLERILNK 179
Query: 177 A--KIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP----WTNPDKPLLINDD 230
K KPV Q+E H YLNQ K++D+CK +I + +Y LG+ W + P+L++D
Sbjct: 180 PGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYCTLGSSRDKTWVDQKSPVLLDDP 239
Query: 231 VLKEIADKYRKSPAQVVLRYLV 252
VL IA KY+++PA V LRY +
Sbjct: 240 VLCAIAKKYKQTPALVALRYQL 261
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
tetrad, hepes, NADP, bIle catabolism, disease mutation,
lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens}
PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Length = 326
Score = 414 bits (1067), Expect = e-146
Identities = 111/263 (42%), Positives = 162/263 (61%), Gaps = 12/263 (4%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGS--GDVKNAVLAAIDAGYRHIDTAEVYQTE 58
+S A + I L++G IP +GLGT+ + G +V AID GYRHID A +YQ E
Sbjct: 3 LSAA-SHRIPLSDGNSIPIIGLGTYSEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNE 61
Query: 59 GDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHW 118
++GEAI+EKI G ++RE++F K+W T+ P+MV + + + L LDYVDLY+I
Sbjct: 62 HEVGEAIREKIAEGKVRREDIFYCGKLWATNHVPEMVRPTLERTLRVLQLDYVDLYIIEV 121
Query: 119 PFAIK-GKDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175
P A K G +++ G+ ++ ++ TW ME C + GL KS+GVSNFN Q++ IL+
Sbjct: 122 PMAFKPGDEIYPRDENGKWLYHKSNLCATWEAMEACKDAGLVKSLGVSNFNRRQLELILN 181
Query: 176 CA--KIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP----WTNPDKPLLIND 229
K KPV+ Q+E HPY Q KL+ FC++H+I +TAYSPLG W N P L+ D
Sbjct: 182 KPGLKHKPVSNQVECHPYFTQPKLLKFCQQHDIVITAYSPLGTSRNPIWVNVSSPPLLKD 241
Query: 230 DVLKEIADKYRKSPAQVVLRYLV 252
+L + +Y K+ AQ+VLR+ +
Sbjct: 242 ALLNSLGKRYNKTAAQIVLRFNI 264
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 413 bits (1065), Expect = e-146
Identities = 95/255 (37%), Positives = 149/255 (58%), Gaps = 4/255 (1%)
Query: 1 MSPAIAPTIQL---NNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQT 57
M PT L ++ ++P +G+G+ D K+A++ AI GYRH DTA Y +
Sbjct: 1 MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGS 60
Query: 58 EGDIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIH 117
E +GEA+KE I G + R++LF+T+K+W+T P +V+ A Q S K L LDY+DLYLIH
Sbjct: 61 EQALGEALKEAIELGLVTRDDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIH 120
Query: 118 WPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCA 177
WP + + + ++ W ME+ ++ GL K+IGVSNF+ +++ +L A
Sbjct: 121 WPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVA 180
Query: 178 KIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIAD 237
+ P Q+E++ Q+KL +FC H I +TA+SP+ + ++ +D+LKEIAD
Sbjct: 181 TVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPVR-KGASRGPNEVMENDMLKEIAD 239
Query: 238 KYRKSPAQVVLRYLV 252
+ KS AQ+ LR+L
Sbjct: 240 AHGKSVAQISLRWLY 254
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 413 bits (1065), Expect = e-146
Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 10/255 (3%)
Query: 6 APTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAI 65
++L ++P +GLGTW+ PG VK AV AAIDAGYRH D A VYQ E ++GEAI
Sbjct: 2 TTFVKLRTKAKMPLVGLGTWKSPPG--QVKEAVKAAIDAGYRHFDCAYVYQNESEVGEAI 59
Query: 66 KEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK-G 124
+EKI ++RE+LFI +K+W T FE ++ +A Q + L LDY+DLYLIHWP ++ G
Sbjct: 60 QEKIKEKAVRREDLFIVSKLWSTFFEKSLMKEAFQKTLSDLKLDYLDLYLIHWPQGLQAG 119
Query: 125 KDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCA--KIK 180
K+ +G+ + + + W GME+ V++GL K++GVSNFN QI+R+L+ K K
Sbjct: 120 KEFLPKDSQGKVLMSKSTFLDAWEGMEELVDQGLVKALGVSNFNHFQIERLLNKPGLKHK 179
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLG---APWTNPDKPLLINDDVLKEIAD 237
PV Q+E HPYL Q KLI +C I V AYSPLG P+ P+ P+++ +KEIA
Sbjct: 180 PVTNQVECHPYLTQEKLIQYCHSKGIAVIAYSPLGSPDRPYAKPEDPVVLEIPKIKEIAA 239
Query: 238 KYRKSPAQVVLRYLV 252
K++K+ AQV++R+ V
Sbjct: 240 KHKKTIAQVLIRFHV 254
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT;
0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A*
1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A*
2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A*
2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Length = 316
Score = 413 bits (1065), Expect = e-146
Identities = 125/255 (49%), Positives = 164/255 (64%), Gaps = 10/255 (3%)
Query: 6 APTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAI 65
A I LNNG ++P LGLGTW+ PG V AV AID GYRHID A VYQ E ++G AI
Sbjct: 2 ASRILLNNGAKMPILGLGTWKSPPG--QVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAI 59
Query: 66 KEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK-G 124
+EK+ +KREELFI +K+W T+ E +V ACQ + L LDY+DLYLIHWP K G
Sbjct: 60 QEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPG 119
Query: 125 KDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCA--KIK 180
K+ G ++ +I +TW ME+ V++GL K+IG+SNFN Q++ IL+ K K
Sbjct: 120 KEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYK 179
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP---WTNPDKPLLINDDVLKEIAD 237
P QIE HPYL Q KLI +C+ I VTAYSPLG+P W P+ P L+ D +K IA
Sbjct: 180 PAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAA 239
Query: 238 KYRKSPAQVVLRYLV 252
K+ K+ AQV++R+ +
Sbjct: 240 KHNKTTAQVLIRFPM 254
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel,
dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis}
SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A*
1sm9_A* 1r38_A* 1z9a_A*
Length = 322
Score = 413 bits (1064), Expect = e-146
Identities = 106/268 (39%), Positives = 149/268 (55%), Gaps = 19/268 (7%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
MS +I P I+L++G +P++G G W+ V AI AGYR D AE Y E +
Sbjct: 1 MSASI-PDIKLSSGHLMPSIGFGCWKLANA--TAGEQVYQAIKAGYRLFDGAEDYGNEKE 57
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G+ +K I+ G +KREE+F+T+K+W + +P V A + L +DYVDL+LIH+P
Sbjct: 58 VGDGVKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPI 117
Query: 121 AIKGKDVHDTSFEGEHN---------NVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIK 171
A K + + G + +V I ETW+ +EK V G KSIGVSNF +
Sbjct: 118 AFKFVPIEEKYPPGFYCGDGNNFVYEDVPILETWKALEKLVAAGKIKSIGVSNFPGALLL 177
Query: 172 RILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP-------WTNPDKP 224
+L A IKP LQ+E HPYL Q KLI+F +K +T+TAYS G + P
Sbjct: 178 DLLRGATIKPAVLQVEHHPYLQQPKLIEFAQKAGVTITAYSSFGPQSFVEMNQGRALNTP 237
Query: 225 LLINDDVLKEIADKYRKSPAQVVLRYLV 252
L D +K IA KY K+PA+V+LR+
Sbjct: 238 TLFAHDTIKAIAAKYNKTPAEVLLRWAA 265
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961;
structural genomics, PSI, protein structure initiative;
1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Length = 317
Score = 411 bits (1060), Expect = e-145
Identities = 115/264 (43%), Positives = 149/264 (56%), Gaps = 22/264 (8%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
MS A +I+L+NG E+P +GLGTWQ P +V AV A+ AGYR IDTA VYQ E
Sbjct: 1 MSSAT-ASIKLSNGVEMPVIGLGTWQSSPA--EVITAVKTAVKAGYRLIDTASVYQNEEA 57
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
IG AIKE + G +KREELFITTK W P + + S KKL L+YVDLYL H P
Sbjct: 58 IGTAIKELLEEGVVKREELFITTKAWTHELAPGKLEGGLRESLKKLQLEYVDLYLAHMPA 117
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
A EH +E+ WR + + GLAK++GVSN+N+ QI R L
Sbjct: 118 AFNDD-------MSEHIASPVEDVWRQFDAVYKAGLAKAVGVSNWNNDQISRALALGLTP 170
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP------------WTNPDKPLLIN 228
N Q+E+H Y Q +DFCKKHNI+VT+Y+ LG+P P +
Sbjct: 171 VHNSQVELHLYFPQHDHVDFCKKHNISVTSYATLGSPGRVNFTLPTGQKLDWAPAPSDLQ 230
Query: 229 DDVLKEIADKYRKSPAQVVLRYLV 252
D + +A+K K+PAQV+LRY +
Sbjct: 231 DQNVLALAEKTHKTPAQVLLRYAL 254
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Length = 335
Score = 412 bits (1061), Expect = e-145
Identities = 107/252 (42%), Positives = 153/252 (60%), Gaps = 5/252 (1%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M+ AI +LN G + P++GLGTWQ PG V +AV AA+ GYRHID A++Y E +
Sbjct: 21 MANAI-TFFKLNTGAKFPSVGLGTWQASPG--LVGDAVAAAVKIGYRHIDCAQIYGNEKE 77
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
IG +K+ +KRE+LFIT+K+W T +P V +A + K L L+YVDLYLIHWP
Sbjct: 78 IGAVLKKLFEDRVVKREDLFITSKLWCTDHDPQDVPEALNRTLKDLQLEYVDLYLIHWPA 137
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
IK V I TW+ ME + G A++IGVSNF++ ++ +L+ A++
Sbjct: 138 RIKKGS--VGIKPENLLPVDIPSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVP 195
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYR 240
P Q+E HP Q KL +FCK + ++AYSPLG+P T K ++ + +L +A+K
Sbjct: 196 PAVNQVECHPSWRQTKLQEFCKSKGVHLSAYSPLGSPGTTWLKSDVLKNPILNMVAEKLG 255
Query: 241 KSPAQVVLRYLV 252
KSPAQV LR+ +
Sbjct: 256 KSPAQVALRWGL 267
>2ao0_A Aldehyde dehydrogenase; TIM barrel, aldo-keto reductase, ternary
complex; HET: NAP FID; 1.85A {Sus scrofa} PDB: 3h4g_A*
3cv7_A* 3fx4_A* 1hqt_A* 1ae4_A* 1cwn_A* 2alr_A
Length = 324
Score = 411 bits (1059), Expect = e-145
Identities = 108/254 (42%), Positives = 169/254 (66%), Gaps = 9/254 (3%)
Query: 6 APTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAI 65
A + L+ GQ++P +GLGTW+ EPG VK A+ A+ GYRHID A +Y E +IGEA+
Sbjct: 2 ASCVLLHTGQKMPLIGLGTWKSEPG--QVKAAIKYALTVGYRHIDCAAIYGNELEIGEAL 59
Query: 66 KEKINSGD-IKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK- 123
+E + G + REELF+T+K+W T P+ V A + + L L+Y+DLYL+HWP+A +
Sbjct: 60 QETVGPGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFER 119
Query: 124 GKDVHDTSFEGE--HNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP 181
G + + +G ++ ++TW+ +E V KGL +++G+SNF+S QI +L A ++P
Sbjct: 120 GDNPFPKNADGTIRYDATHYKDTWKALEALVAKGLVRALGLSNFSSRQIDDVLSVASVRP 179
Query: 182 VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP---WTNPDKPLLINDDVLKEIADK 238
LQ+E HPYL Q +LI C+ + VTAYSPLG+ W +P++P+L+ + V++ +A+K
Sbjct: 180 AVLQVECHPYLAQNELIAHCQARGLEVTAYSPLGSSDRAWRDPNEPVLLEEPVVQALAEK 239
Query: 239 YRKSPAQVVLRYLV 252
Y +SPAQ++LR+ V
Sbjct: 240 YNRSPAQILLRWQV 253
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university
of washingto niaid, oxidoreductase, S genomics; HET:
NAP; 1.75A {Giardia lamblia}
Length = 334
Score = 406 bits (1047), Expect = e-143
Identities = 102/265 (38%), Positives = 141/265 (53%), Gaps = 15/265 (5%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M A T + Q P LG GTWQ P V+ AV A+ GYRHID A VYQ E
Sbjct: 9 MGTLEAQTQGPGSMQYPPRLGFGTWQAPPE--AVQTAVETALMTGYRHIDCAYVYQNEEA 66
Query: 61 IGEAIKEKINSG--DIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHW 118
IG A + IKRE+++IT+K+W + P++V + C+ + L +DY+DL+L+HW
Sbjct: 67 IGRAFGKIFKDASSGIKREDVWITSKLWNYNHRPELVREQCKKTMSDLQVDYLDLFLVHW 126
Query: 119 PFAIKGKDVHDTSFEGEHN-----NVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRI 173
P A DV D + V + +TWR ME+ VE+GL K IGVSN+ + +
Sbjct: 127 PLAFVRNDVGDLFPKDAEGRAMLEKVPLADTWRAMEQLVEEGLVKHIGVSNYTVPLLADL 186
Query: 174 LDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP------WTNPDKPLLI 227
L+ AKIKP+ QIE+HP+ + FC + I VTAYSP+G + K +++
Sbjct: 187 LNYAKIKPLVNQIEIHPWHPNDATVKFCLDNGIGVTAYSPMGGSYADPRDPSGTQKNVIL 246
Query: 228 NDDVLKEIADKYRKSPAQVVLRYLV 252
LK IAD SP V L + V
Sbjct: 247 ECKTLKAIADAKGTSPHCVALAWHV 271
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 406 bits (1045), Expect = e-143
Identities = 94/252 (37%), Positives = 147/252 (58%), Gaps = 9/252 (3%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M+ I +LN G ++P +GLGT+ V A+ AI GYRHID A +Y E +
Sbjct: 21 MAAPI-RFFELNTGAKLPCVGLGTYA------MVATAIEQAIKIGYRHIDCASIYGNEKE 73
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
IG +K+ I G +KREELFIT+K+W P+ V +A + + + L +DYVDLYLIHWP
Sbjct: 74 IGGVLKKLIGDGFVKREELFITSKLWSNDHLPEDVPKALEKTLQDLQIDYVDLYLIHWPA 133
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
++K + + T I TW+ ME + G A++IGVSNF+S ++ +L+ A++
Sbjct: 134 SLKKESLMPTPEM--LTKPDITSTWKAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVT 191
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYR 240
P Q+E HP Q+ L + CK + ++ YSPLG+ + ++ + ++ E+A+K
Sbjct: 192 PAVNQVECHPVWQQQGLHELCKSKGVHLSGYSPLGSQSKGEVRLKVLQNPIVTEVAEKLG 251
Query: 241 KSPAQVVLRYLV 252
K+ AQV LR+ +
Sbjct: 252 KTTAQVALRWGL 263
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 404 bits (1040), Expect = e-142
Identities = 98/252 (38%), Positives = 148/252 (58%), Gaps = 9/252 (3%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M L +G +PA+GLGTW+ + A +AGYRH+DTA Y E +
Sbjct: 32 MGQGEQDHFVLKSGHAMPAVGLGTWRAGSD--TAHSVRTAITEAGYRHVDTAAEYGVEKE 89
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G+ +K + +G I R++LF+T+K+W T+ P+ V A +N+ K L LDY+DLY IHWPF
Sbjct: 90 VGKGLKAAMEAG-IDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPF 148
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
+K H GE +E W+ ME V+ GL K IGV N+ ++ R+L AKI
Sbjct: 149 RLK-DGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIP 207
Query: 181 PVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYR 240
P Q+E+HP K+ + CKKH I +TAYSPLG + +K L +D V++++A+K
Sbjct: 208 PAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLG----SSEKNLA-HDPVVEKVANKLN 262
Query: 241 KSPAQVVLRYLV 252
K+P QV++++ +
Sbjct: 263 KTPGQVLIKWAL 274
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 327 bits (841), Expect = e-113
Identities = 93/253 (36%), Positives = 140/253 (55%), Gaps = 23/253 (9%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M+ + L+NG ++P GLG WQ G +NAV A+ AGYRHIDTA +Y+ E
Sbjct: 5 MAGVDKAMVTLSNGVKMPQFGLGVWQSPAGE-VTENAVKWALCAGYRHIDTAAIYKNEES 63
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G ++ SG + RE++FITTK+W T + + A + S +KLG+DY+DLYLIHWP
Sbjct: 64 VGAGLRA---SG-VPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIHWPR 119
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
+ ++WR E+ ++ ++IGVSNF+ ++ +L +
Sbjct: 120 GKDILSKEGKKYL---------DSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCTVT 170
Query: 181 P-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
P VN Q+E+HP NQ L FC I V A+SPLG + L+++ +L I KY
Sbjct: 171 PMVN-QVELHPLNNQADLRAFCDAKQIKVEAWSPLG-------QGKLLSNPILSAIGAKY 222
Query: 240 RKSPAQVVLRYLV 252
K+ AQV+LR+ +
Sbjct: 223 NKTAAQVILRWNI 235
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics,
joint center for structural genomics, PSI, protein
structure initiative; HET: NAP; 2.40A {Thermotoga
maritima} SCOP: c.1.7.1
Length = 298
Score = 325 bits (836), Expect = e-112
Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 25/246 (10%)
Query: 7 PTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIK 66
P + LNNG E+P LG G +Q P + V AI GYR IDTA Y E +G AIK
Sbjct: 16 PKVTLNNGVEMPILGYGVFQIPPE--KTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIK 73
Query: 67 EKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKD 126
I+ G ++REELF+TTK+W++ + +A + S KKL L+Y+DLYLIH PF D
Sbjct: 74 RAIDEGIVRREELFVTTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQPFG----D 129
Query: 127 VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQI 186
VH W+ ME+ + GL ++IGVSNF ++ ++ +I P QI
Sbjct: 130 VH--------------CAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHEIVPAVNQI 175
Query: 187 EVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQV 246
E+HP+ +++ I+F + +NI A+ P + + + VL+ IA+KY K+ AQV
Sbjct: 176 EIHPFYQRQEEIEFMRNYNIQPEAWGPFAE-----GRKNIFQNGVLRSIAEKYGKTVAQV 230
Query: 247 VLRYLV 252
+LR+L
Sbjct: 231 ILRWLT 236
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT;
2.10A {Trypanosoma brucei}
Length = 281
Score = 319 bits (820), Expect = e-109
Identities = 104/250 (41%), Positives = 146/250 (58%), Gaps = 31/250 (12%)
Query: 4 AIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGE 63
A+ +++L+NG +P LG G W+ + G+ + + A + AI +GYRHIDTA +Y+ E G
Sbjct: 7 ALTQSLKLSNGVMMPVLGFGMWKLQDGN-EAETATMWAIKSGYRHIDTAAIYKNEESAGR 65
Query: 64 AIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK 123
AI G + REELF+TTK+W + + + A + S KKLGL+YVDLYLIHWP
Sbjct: 66 AIAS---CG-VPREELFVTTKLWNSDQGYESTLSAFEKSIKKLGLEYVDLYLIHWPG--- 118
Query: 124 GKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP-V 182
KD +TW+ EK ++IGVSNF+ I+ +L K+ P V
Sbjct: 119 -KDKF-------------IDTWKAFEKLYADKKVRAIGVSNFHEHHIEELLKHCKVAPMV 164
Query: 183 NLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKS 242
N QIE+HP LNQ+ L ++CK NI VTA+SPLG + L+ D LK I KY K+
Sbjct: 165 N-QIELHPLLNQKALCEYCKSKNIAVTAWSPLG-------QGHLVEDARLKAIGGKYGKT 216
Query: 243 PAQVVLRYLV 252
AQV+LR+ +
Sbjct: 217 AAQVMLRWEI 226
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 319 bits (819), Expect = e-109
Identities = 102/247 (41%), Positives = 150/247 (60%), Gaps = 28/247 (11%)
Query: 7 PTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIK 66
+ L+N +P LGLG W+ + G+ + NAV AI+AGYRHIDTA +Y E +G+ I+
Sbjct: 14 NCVTLHNSVRMPQLGLGVWRAQDGA-ETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIR 72
Query: 67 EKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKD 126
E SG + REE+++TTKVW + + + A + S + LGL+Y+DLYLIHWP K
Sbjct: 73 E---SG-VPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKKK--- 125
Query: 127 VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP-VNLQ 185
+TW+ +EK E+ ++IGVSNF + + KI+P VN Q
Sbjct: 126 --------------FVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVN-Q 170
Query: 186 IEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQ 245
+E+HP QR L +FCK+HNI +TA+SPLG + ++ ++ + VL EIA K+ KSPAQ
Sbjct: 171 VELHPLFQQRTLREFCKQHNIAITAWSPLG----SGEEAGILKNHVLGEIAKKHNKSPAQ 226
Query: 246 VVLRYLV 252
VV+R+ +
Sbjct: 227 VVIRWDI 233
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 316 bits (812), Expect = e-108
Identities = 92/247 (37%), Positives = 127/247 (51%), Gaps = 28/247 (11%)
Query: 7 PTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIK 66
P+I LN+G IP LG G ++ P D + AV A++ GYRHIDTA +Y E +G AI
Sbjct: 4 PSIVLNDGNSIPQLGYGVFKVPPA--DTQRAVEEALEVGYRHIDTAAIYGNEEGVGAAIA 61
Query: 67 EKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKD 126
SG I R++LFITTK+W + D A S KL LD VDLYL+HWP
Sbjct: 62 A---SG-IARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVHWPTPAADNY 117
Query: 127 VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP-VNLQ 185
V W M + GL +SIGVSN ++RI+ + P VN Q
Sbjct: 118 V---------------HAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVN-Q 161
Query: 186 IEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQ 245
IE+HP QR++ D+ H++ + ++ PLG K L + + A + K+PAQ
Sbjct: 162 IELHPAYQQREITDWAAAHDVKIESWGPLGQ-----GKYDLFGAEPVTAAAAAHGKTPAQ 216
Query: 246 VVLRYLV 252
VLR+ +
Sbjct: 217 AVLRWHL 223
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus
subtilis} PDB: 3d3f_A*
Length = 276
Score = 314 bits (808), Expect = e-108
Identities = 104/253 (41%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M ++ T++L+NG E+P GLG ++ E G+ + +V AAI GYR IDTA +Y+ E
Sbjct: 1 MPTSLKDTVKLHNGVEMPWFGLGVFKVENGN-EATESVKAAIKNGYRSIDTAAIYKNEEG 59
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G IKE SG + REELFIT+KVW + + A + S ++L LDY+DLYLIHWP
Sbjct: 60 VGIGIKE---SG-VAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPG 115
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
KD + ++TWR +EK + G ++IGVSNF ++ +L A+IK
Sbjct: 116 ----KDKY-------------KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIK 158
Query: 181 P-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
P VN Q+E HP L Q++L D+CK I + A+SPL + L++++VL +IA+K+
Sbjct: 159 PMVN-QVEFHPRLTQKELRDYCKGQGIQLEAWSPLM-------QGQLLDNEVLTQIAEKH 210
Query: 240 RKSPAQVVLRYLV 252
KS AQV+LR+ +
Sbjct: 211 NKSVAQVILRWDL 223
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 314 bits (808), Expect = e-108
Identities = 104/253 (41%), Positives = 144/253 (56%), Gaps = 31/253 (12%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M + PT++LN+G IP LG G WQ + +AV A+ AGYRHIDTA +Y E
Sbjct: 22 MIMTV-PTVKLNDGNHIPQLGYGVWQISND--EAVSAVSEALKAGYRHIDTATIYGNEEG 78
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G+AI SG I R ++F+TTK+W + + ++A S KKLG DYVDLYLIHWP
Sbjct: 79 VGKAING---SG-IARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPM 134
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
K + ETWR K E+G KSIGVSNF + ++R++ + +
Sbjct: 135 PSKDLFM---------------ETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVT 179
Query: 181 P-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
P +N QIE+HP Q +L F KH+I A+SPLG + L+ D LK IA+K+
Sbjct: 180 PVLN-QIELHPQFQQDELRLFHGKHDIATEAWSPLG-------QGKLLEDPTLKSIAEKH 231
Query: 240 RKSPAQVVLRYLV 252
KS AQ++LR+ +
Sbjct: 232 AKSVAQIILRWHI 244
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 314 bits (808), Expect = e-108
Identities = 90/253 (35%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
A PT+ LN+ +P +G+G + + + +V AA++AGYR IDTA Y E
Sbjct: 6 GQAAAIPTVTLNDDNTLPVVGIGVGELSDS--EAERSVSAALEAGYRLIDTAAAYGNEAA 63
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G AI SG I R+E+++TTK+ A + S ++LGLDYVDLYLIHWP
Sbjct: 64 VGRAIAA---SG-IPRDEIYVTTKLATPDQGFTSSQAAARASLERLGLDYVDLYLIHWPG 119
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
K V ++W G+ K E G+A+SIGV NF + ++ I+
Sbjct: 120 GDTSKYV---------------DSWGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFT 164
Query: 181 P-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
P VN QIE+HP LNQ L + +NI AY PLG L++ + IA+ +
Sbjct: 165 PAVN-QIELHPLLNQAALREVNAGYNIVTEAYGPLG-------VGRLLDHPAVTAIAEAH 216
Query: 240 RKSPAQVVLRYLV 252
++ AQV+LR+ +
Sbjct: 217 GRTAAQVLLRWSI 229
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 315 bits (810), Expect = e-108
Identities = 104/253 (41%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGD 60
M ++ T++L+NG E+P GLG ++ E G+ + +V AAI GYR IDTA +Y+ E
Sbjct: 35 MPTSLKDTVKLHNGVEMPWFGLGVFKVENGN-EATESVKAAIKNGYRSIDTAAIYKNEEG 93
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPF 120
+G IKE SG + REELFIT+KVW + + A + S ++L LDY+DLYLIHWP
Sbjct: 94 VGIGIKE---SG-VAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPG 149
Query: 121 AIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIK 180
KD + ++TWR +EK + G ++IGVSNF ++ +L A+IK
Sbjct: 150 ----KDKY-------------KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIK 192
Query: 181 P-VNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKY 239
P VN Q+E HP L Q++L D+CK I + A+SPL + L++++VL +IA+K+
Sbjct: 193 PMVN-QVEFHPRLTQKELRDYCKGQGIQLEAWSPLM-------QGQLLDNEVLTQIAEKH 244
Query: 240 RKSPAQVVLRYLV 252
KS AQV+LR+ +
Sbjct: 245 NKSVAQVILRWDL 257
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 314 bits (806), Expect = e-107
Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 29/246 (11%)
Query: 7 PTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIK 66
+NG IPALG GT++ +V + A+ G+RH+DTA++Y E ++GEAI+
Sbjct: 24 MHAVSSNGANIPALGFGTFRMSGA--EVLRILPQALKLGFRHVDTAQIYGNEAEVGEAIQ 81
Query: 67 EKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKD 126
+ SG I R ++F+TTKVW+ ++ D + + S +KL D+VDL L+HWP
Sbjct: 82 K---SG-IPRADVFLTTKVWVDNYRHDAFIASVDESLRKLRTDHVDLLLLHWPG------ 131
Query: 127 VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKPVNLQI 186
++V + E + + G + IG+SNFN+ Q++ + Q+
Sbjct: 132 ----------SDVPMAERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQV 181
Query: 187 EVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQV 246
E HPYL+Q K++ ++ +++T+Y + + D +L EI ++ K+ AQV
Sbjct: 182 EYHPYLDQTKVLQTARRLGMSLTSYYAMA-------NGKVPADPLLTEIGGRHGKTAAQV 234
Query: 247 VLRYLV 252
LR+LV
Sbjct: 235 ALRWLV 240
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 312 bits (801), Expect = e-106
Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 30/250 (12%)
Query: 4 AIAPTIQLNNGQEIPALGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGE 63
A I+L +G +P LGLG WQ +V A+ A++ GYR IDTA Y+ E +G+
Sbjct: 23 ANPTVIKLQDGNVMPQLGLGVWQASNE--EVITAIQKALEVGYRSIDTAAAYKNEEGVGK 80
Query: 64 AIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIK 123
A+K + + REELFITTK+W + +A +S KKL LDY+DLYL+HWP
Sbjct: 81 ALKN---AS-VNREELFITTKLWNDDHKR--PREALLDSLKKLQLDYIDLYLMHWPVPAI 134
Query: 124 GKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAKIKP-V 182
V E W+GM + ++GL KSIGV NF ++R++D + P +
Sbjct: 135 DHYV---------------EAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVI 179
Query: 183 NLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKS 242
N QIE+HP + QR+L + H I ++SPL + + V++++ADKY K+
Sbjct: 180 N-QIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-----GGKGVFDQKVIRDLADKYGKT 233
Query: 243 PAQVVLRYLV 252
PAQ+V+R+ +
Sbjct: 234 PAQIVIRWHL 243
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A
{Mus musculus}
Length = 324
Score = 308 bits (789), Expect = e-104
Identities = 109/262 (41%), Positives = 156/262 (59%), Gaps = 11/262 (4%)
Query: 1 MSPAIAPTIQLNNGQEIPALGLGTWQGEPG-SGDVKNAVLAAIDAGYRHIDTAEVYQTEG 59
MS + LN+G IPALG GT+ A A+D GYRH+DTA YQ E
Sbjct: 2 MSSXQ-HCVXLNDGHLIPALGFGTYXPXEVPXSXSLEAACLALDVGYRHVDTAYAYQVEE 60
Query: 60 DIGEAIKEKINSGDIKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWP 119
+IG+AI+ I +G + RE+LF+TTK+W T F P++V A + S L LDYVDLY++H+P
Sbjct: 61 EIGQAIQSXIXAGVVXREDLFVTTKLWCTCFRPELVXPALEXSLXXLQLDYVDLYIMHYP 120
Query: 120 FAI-KGKDVHDTSFEG--EHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDC 176
+ G + + +G + V +TW +E+C + GL SIGVSNFN Q++RIL+
Sbjct: 121 VPMXSGDNDFPVNEQGXSLLDTVDFCDTWERLEECXDAGLVXSIGVSNFNHRQLERILNX 180
Query: 177 AKI--KPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAP----WTNPDKPLLINDD 230
+ PV Q+E H YLNQR L+D+C+ +I + AY LG W + + P+L+ND
Sbjct: 181 PGLXYXPVCNQVECHLYLNQRXLLDYCESXDIVLVAYGALGTQRYXEWVDQNSPVLLNDP 240
Query: 231 VLKEIADKYRKSPAQVVLRYLV 252
VL ++A +SPA + LRYL+
Sbjct: 241 VLCDVAXXNXRSPALIALRYLI 262
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 147 bits (373), Expect = 4e-42
Identities = 59/265 (22%), Positives = 97/265 (36%), Gaps = 45/265 (16%)
Query: 8 TIQL-NNGQEIPALGLGTWQ-GEPGSGD--VKNAVLAAIDAGYRHIDTAEVY---QTEGD 60
I + G E +G W+ + + + + +D G +D A++Y Q E
Sbjct: 25 RITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAA 84
Query: 61 IGEAIKEKINSGDIKREELFITTKVWITH------------FEPDMVVQACQNSCKKLGL 108
GEA+K RE + I +K I + D ++++ + S L
Sbjct: 85 FGEALKLA----PHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLAT 140
Query: 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168
D++DL LIH P D + +E + + G + GVSNF
Sbjct: 141 DHLDLLLIHRP---------DP-------LMDADEVADAFKHLHQSGKVRHFGVSNFTPA 184
Query: 169 QIKRILDCAKIKPVNLQIE---VHPYLNQRKLIDFCKKHNITVTAYSPLGA-PWTNPDKP 224
Q + Q+E VH L +D ++ + A+S LG N D
Sbjct: 185 QFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYF 244
Query: 225 LLINDDVLKEIADKYR-KSPAQVVL 248
+ D L +A++ S QVV
Sbjct: 245 QPLR-DELAVVAEELNAGSIEQVVN 268
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 144 bits (365), Expect = 7e-41
Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 74/292 (25%)
Query: 8 TIQL-NNGQEIPALGLGTW---QGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY---QT 57
+ + G E +GLGTW G D K + + AA+D G IDTA Y Q+
Sbjct: 3 YTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQS 62
Query: 58 EGDIGEAIKEKINSGDIKREELFITTKVWITHFE--------PDMVVQACQNSCKKLGLD 109
E +G+AIK +KR+++ + TK + +V+ +NS K+L D
Sbjct: 63 EEIVGKAIK-----EYMKRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTD 117
Query: 110 YVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQ 169
Y+DLY +HWP D V IEET M++ + G ++IGVSNF+ Q
Sbjct: 118 YIDLYQVHWP---------DP-------LVPIEETAEVMKELYDAGKIRAIGVSNFSIEQ 161
Query: 170 IKRILDCAKIKPVNLQIEVHPY-LNQRK----LIDFCKKHNITVTAYSPLGAPW----TN 220
+ A + +Q Y L +R+ ++ + K + IT Y L
Sbjct: 162 MDTFRAVAPL--HTIQPP---YNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGKMT 216
Query: 221 PDKPLLIND--------------------DVLKEIAD-KYRKSPAQVVLRYL 251
+ +D + L ++A +Y KS + +R++
Sbjct: 217 EEYTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWI 268
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 143 bits (363), Expect = 1e-40
Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 79/294 (26%)
Query: 8 TIQL-NNGQEIPALGLGTWQ-------GEPGSGDVKNAVLAAIDAGYRHIDTAEVY---Q 56
+L + ++ +GLGT K V AI G +DTA +Y +
Sbjct: 3 KAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGR 62
Query: 57 TEGDIGEAIKEKINSGDIKREELFITTKVWITHFE--------PDMVVQACQNSCKKLGL 108
+E IGE ++ + RE++ I TK PD + ++ S K+L
Sbjct: 63 SEELIGEVLR------EFNREDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNT 116
Query: 109 DYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSG 168
DY+DL+ IH+P D + +E + + + G +SIGVSNF+
Sbjct: 117 DYIDLFYIHFP---------DE-------HTPKDEAVNALNEMKKAGKIRSIGVSNFSLE 160
Query: 169 QIKRILDCAKIKPVN-LQIEVHPY-LNQR----KLIDFCKKHNITVTAYSPLGA-----P 217
Q+K K V+ LQ E Y L R + K+HNI+ Y PL +
Sbjct: 161 QLKE---ANKDGLVDVLQGE---YNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGK 214
Query: 218 WTNPDKPLLIND--------------------DVLKEIADKYRKSPAQVVLRYL 251
+T D + L IA+K+ +VL +
Sbjct: 215 YTEDTT-FPEGDLRNEQEHFKGERFKENIRKVNKLAPIAEKHNVDIPHIVLAWY 267
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 144 bits (365), Expect = 1e-40
Identities = 67/298 (22%), Positives = 116/298 (38%), Gaps = 84/298 (28%)
Query: 8 TIQL-NNGQEIPALGLGTWQ------GEPGSGDVKNAVLAAIDAGYRHIDTAEVY---QT 57
TI++ + + LGTW G P + + AA+D G IDTA VY +
Sbjct: 21 TIRIPGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHS 80
Query: 58 EGDIGEAIKEKINSGDIKREELFITTK---VWITHFE----------PDMVVQACQNSCK 104
E +G A+ EK + + TK W+ E P + + ++S +
Sbjct: 81 EEIVGRALAEK-------PNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLR 133
Query: 105 KLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSN 164
+L ++ +DL IHWP D I+E+ R ++K + G +++GVSN
Sbjct: 134 RLRVETIDLEQIHWP---------DD-------KTPIDESARELQKLHQDGKIRALGVSN 177
Query: 165 FNSGQIKRILDCAKIKPVN-LQIEVHPY-LNQR----KLIDFCKKHNITVTAYSPLGA-- 216
F+ Q+ ++ P+ +Q L +R ++ + +KHN V AY L
Sbjct: 178 FSPEQMDI---FREVAPLATIQPP---LNLFERTIEKDILPYAEKHNAVVLAYGALCRGL 231
Query: 217 ---PWTNPDKPLLIND--------------------DVLKEIADKYRKSPAQVVLRYL 251
D +D D +++A+K KS +R++
Sbjct: 232 LTGKMN-RDTTFPKDDLRSNDPKFQKPNFEKYLAAMDEFEKLAEKRGKSVMAFAVRWV 288
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 126 bits (319), Expect = 3e-34
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 72/287 (25%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY---QTEGDIGEAI 65
+G + LGLGTW G + A + A D G DTAEVY + E +G I
Sbjct: 10 KSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNII 69
Query: 66 KEKINSGDIKREELFITTKV-WITHFEPDM------VVQACQNSCKKLGLDYVDLYLIHW 118
K+ +R L ITTK+ W E + +++ + S ++L L+YVD+ +
Sbjct: 70 KK----KGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANR 125
Query: 119 PFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK 178
P D N +EET R M + +G+A G S ++S +I A+
Sbjct: 126 P---------DP-------NTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVAR 169
Query: 179 ----IKPVNLQIEVHPYLNQRK-----LIDFCKKHNITVTAYSPL-----------GAP- 217
I P+ Q E H + QR+ L + K + +SPL G P
Sbjct: 170 QFNLIPPICEQAEYH--MFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPP 227
Query: 218 ---WTNPDKPLLIND-------------DVLKEIADKYRKSPAQVVL 248
+ L + L+ IA++ + Q+ +
Sbjct: 228 YSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI 274
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 2clp_A* 2c91_A*
Length = 327
Score = 125 bits (315), Expect = 1e-33
Identities = 58/290 (20%), Positives = 93/290 (32%), Gaps = 84/290 (28%)
Query: 18 PALGLGTWQ-GEPGSGDVKNAVL-AAIDAGYRHIDTAEVY---QTEGDIGEAIKEKINSG 72
PA LG + G +A + A + G+ IDTA VY Q+E +G+
Sbjct: 6 PATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEIDTAFVYANGQSETILGDLGLG----L 61
Query: 73 DIKREELFITTKVWITHFEPDM--------VVQACQNSCKKLGLDYVDLYLIHWPFAIKG 124
++ I TK P V + S K+L VDL+ +H+P
Sbjct: 62 GRSGCKVKIATKAA-----PMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFP----- 111
Query: 125 KDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK----IK 180
D H T IEET + + ++G +G+SN+ S ++ I K I
Sbjct: 112 -D-HGTP---------IEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIM 160
Query: 181 PVNLQIEVHPY-LNQRK----LIDFCKKHNITVTAYSPLG-------------------- 215
P Q Y R+ L + + A++PL
Sbjct: 161 PTVYQGM---YNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPES 217
Query: 216 ----APWTNPDKPLLIND----------DVLKEIADKYRKSPAQVVLRYL 251
P++ + LK S +R++
Sbjct: 218 RFFGNPFSQLYMDRYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWM 267
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 125 bits (317), Expect = 1e-33
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 72/287 (25%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY---QTEGDIGEAI 65
+G + LGLGTW G + A + A D G DTAEVY + E +G I
Sbjct: 44 KSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNII 103
Query: 66 KEKINSGDIKREELFITTKV-WITHFEPDM------VVQACQNSCKKLGLDYVDLYLIHW 118
K+ +R L ITTK+ W E + +++ + S ++L L+YVD+ +
Sbjct: 104 KK----KGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANR 159
Query: 119 PFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK 178
P D N +EET R M + +G+A G S ++S +I A+
Sbjct: 160 P---------DP-------NTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVAR 203
Query: 179 ----IKPVNLQIEVHPYLNQRK-----LIDFCKKHNITVTAYSPL-----------GAP- 217
I P+ Q E H + QR+ L + K + +SPL G P
Sbjct: 204 QFNLIPPICEQAEYH--MFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPP 261
Query: 218 ---WTNPDKPLLIND-------------DVLKEIADKYRKSPAQVVL 248
+ L + L+ IA++ + Q+ +
Sbjct: 262 YSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI 308
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 123 bits (312), Expect = 5e-33
Identities = 61/295 (20%), Positives = 113/295 (38%), Gaps = 80/295 (27%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY-----QTEGDIGE 63
+G +PAL LG W +++ + A D G H D A Y E + G
Sbjct: 20 KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGR 79
Query: 64 AIKEKINSGDIKREELFITTKV-WITHFEP-DM------VVQACQNSCKKLGLDYVDLYL 115
++E R+EL I+TK + P ++ + S K++GL+YVD++
Sbjct: 80 LLREDFA---AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFY 136
Query: 116 IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175
H D N +EET + V+ G A +G+S+++ + +++++
Sbjct: 137 SHRV---------DE-------NTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVE 180
Query: 176 CAK---IKPVNLQIEVHPYLN-------QRKLIDFCKKHNITVTAYSPL----------- 214
+ I + Q P N + L+D + + + A++PL
Sbjct: 181 LLREWKIPLLIHQ----PSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLN 236
Query: 215 GAP----------WTNPDKPLLINDDV------LKEIADKYRKSPAQV----VLR 249
G P P ++ + L E+A + +S AQ+ +L+
Sbjct: 237 GIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLK 291
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC;
1.25A {Bacillus halodurans} PDB: 1ynq_A*
Length = 317
Score = 123 bits (310), Expect = 5e-33
Identities = 48/268 (17%), Positives = 102/268 (38%), Gaps = 59/268 (22%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY---QTEGDIGEAI 65
+ + LG G D A + ++ G ++DTA++Y E +G+A+
Sbjct: 28 TSDLHVSELGFGCMSL---GTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKAL 84
Query: 66 KEKINSGDIKREELFITTKVWITHFE----------PDMVVQACQNSCKKLGLDYVDLYL 115
K + R+++ + TKV + + +A ++S ++L DY+DLY
Sbjct: 85 KGR-------RQDIILATKVGNRFEQGKEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQ 137
Query: 116 IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175
+H + I+ET E+ ++G+ + G+S+ IK L
Sbjct: 138 LHGG---------TI-------DDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLK 181
Query: 176 CAKIKPVNLQIEVHPY-LNQRK---LIDFCKKHNITVTAYSPLG--------APWTNPDK 223
+ I V++ ++ Y + R+ ++H ++V P+ P
Sbjct: 182 RSNI--VSIMMQ---YSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYL 236
Query: 224 PLLINDDVLKEIADKYRKSPAQVVLRYL 251
++ L + + ++ L+Y
Sbjct: 237 NYRYDELKLLRESLPTDRPLHELALQYC 264
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 123 bits (312), Expect = 5e-33
Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 76/291 (26%)
Query: 12 NNGQEIPALGLGTWQGEPGSGDVKNA---VLAAIDAGYRHIDTAEVY-----QTEGDIGE 63
+G ++PA+ LG W + V+N+ + A D G H D A Y E + G
Sbjct: 41 RSGVKLPAISLGLWHNFGDTTRVENSRALLQRAFDLGITHFDLANNYGPPPGSAECNFGR 100
Query: 64 AIKEKINSGDIKREELFITTKV-WITHFEPDM-------VVQACQNSCKKLGLDYVDLYL 115
++E R+EL I+TK + P ++ + S K++GL+YVD++
Sbjct: 101 ILQEDFLP---WRDELIISTKAGYTMWDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFY 157
Query: 116 IHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILD 175
H P D ++ET + ++ V G A +G+SN+ + ++ +D
Sbjct: 158 HHRP---------DP-------ETPLKETMKALDHLVRHGKALYVGISNYPADLARQAID 201
Query: 176 CAK---IKPVNLQIEVHPYLN------QRKLIDFCKKHNITVTAYSPL-----------G 215
+ + Q P + + L+ ++ + A+SPL G
Sbjct: 202 ILEDLGTPCLIHQ----PKYSLFERWVEDGLLALLQEKGVGSIAFSPLAGGQLTDRYLNG 257
Query: 216 AP------WTNPD-KPLLINDDV------LKEIADKYRKSPAQV----VLR 249
P + KP I D L E+A + + +Q+ VLR
Sbjct: 258 IPEDSRAASGSRFLKPEQITADKLEKVRRLNELAARRGQKLSQMALAWVLR 308
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, barrel; HET: FLC NDP;
2.4A {Homo sapiens}
Length = 360
Score = 118 bits (299), Expect = 5e-31
Identities = 55/281 (19%), Positives = 88/281 (31%), Gaps = 72/281 (25%)
Query: 20 LGLGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVY---QTEGDIGEAIKEKINSGDIKR 76
LG + AV A ++ G+ +DTA +Y Q+E +G
Sbjct: 43 LGTMEMGRRMDAPASAAAVRAFLERGHTELDTAFMYSDGQSETILGGLGLG----LGGGD 98
Query: 77 EELFITTKVWIT---HFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFE 133
+ I TK +PD V + S K+L VDL+ +H P D H T
Sbjct: 99 CRVKIATKANPWDGKSLKPDSVRSQLETSLKRLQCPQVDLFYLHAP------D-HGT--- 148
Query: 134 GEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRILDCAK----IKPVNLQIEVH 189
+EET ++ ++G +G+SN+ S ++ I K I P Q
Sbjct: 149 ------PVEETLHACQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGM-- 200
Query: 190 PY-LNQRK----LIDFCKKHNITVTAYSPLG------------------------APWTN 220
Y R+ L + + AY+PL W
Sbjct: 201 -YNATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGNSWAE 259
Query: 221 PDKPLLIND----------DVLKEIADKYRKSPAQVVLRYL 251
+ + L+ S LR++
Sbjct: 260 TYRNRFWKEHHFEAIALVEKALQAAYGASAPSVTSAALRWM 300
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 116 bits (294), Expect = 2e-30
Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 77/303 (25%)
Query: 12 NNGQEIPALGLGT--WQGEPGSGDVKNAVL-AAIDAGYRHIDTAEVY----------QTE 58
++ E+ LGLGT + GE S +A L A+ G ID AE+Y TE
Sbjct: 8 HSSLEVSTLGLGTMTF-GEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTE 66
Query: 59 GDIGEAIKEKINSGDIKREELFITTKV------WITHFEPDM------VVQACQNSCKKL 106
+G + + G RE+L I +KV PD + +A +S K+L
Sbjct: 67 TYVGNWLAK---HG--SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121
Query: 107 GLDYVDLYLIHWP------FAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSI 160
DY+DLY +HWP F G D VS+ +T + + G + I
Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTD-----SAPAVSLLDTLDALAEYQRAGKIRYI 176
Query: 161 GVSNFNSGQIKRILDCAKI----KPVNLQIEVHPY-LNQRK----LIDFCKKHNITVTAY 211
GVSN + + R L A + V +Q +PY L R L + + + + AY
Sbjct: 177 GVSNETAFGVMRYLHLADKHDLPRIVTIQ---NPYSLLNRSFEVGLAEVSQYEGVELLAY 233
Query: 212 SPLGAPW-----------------TNPDKPLLIND------DVLKEIADKYRKSPAQVVL 248
S LG + +IA ++ PAQ+ L
Sbjct: 234 SCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMAL 293
Query: 249 RYL 251
++
Sbjct: 294 AFV 296
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 104 bits (262), Expect = 5e-26
Identities = 64/288 (22%), Positives = 110/288 (38%), Gaps = 71/288 (24%)
Query: 7 PTIQL-NNGQEIPALGLG-----TWQGEPGSGDVKNAVL-AAIDAGYRHIDTAEVYQTEG 59
P ++L G E+ LG G + + AV+ A + G DT+++Y G
Sbjct: 2 PRVKLGTQGLEVSKLGFGCMGLSGDYNDALPEEQGIAVIKEAFNCGITFFDTSDIYGENG 61
Query: 60 D----IGEAIKEKINSGDIKREELFITTKVWITHFE---------PDMVVQACQNSCKKL 106
+G+A+K + RE + + TK I PD V C+ S K+L
Sbjct: 62 SNEELLGKALK------QLPREXIQVGTKFGIHEIGFSGVKAXGTPDYVRSCCEASLKRL 115
Query: 107 GLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFN 166
+DY+DL+ IH V IE T + VE+G +G+S +
Sbjct: 116 DVDYIDLFYIHRI----------------DTTVPIEITMGELXXLVEEGKIXYVGLSEAS 159
Query: 167 SGQIKRILDCAKIKPVN-LQIEVHPYLN--QRKLIDFCKKHNITVTAYSPLG-------- 215
I+R + PV LQIE + + +++ C++ I + YSP+G
Sbjct: 160 PDTIRR---AHAVHPVTALQIEYSLWTRDIEDEIVPLCRQLGIGIVPYSPIGRGLFWGKA 216
Query: 216 -------------APWTNPD--KPLLINDDVLKEIADKYRKSPAQVVL 248
P + + ++ ++ K+ +P Q+ L
Sbjct: 217 IKESLPENSVLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLAL 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 34/266 (12%), Positives = 76/266 (28%), Gaps = 80/266 (30%)
Query: 61 IGEAIKEKINSGD----IKREELFITTKVWITHFEPDMVVQACQNSCKKLGLDYVDLYLI 116
I E+I++ + + D + ++L + + EP +Y ++
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---------------EYRKMF-- 375
Query: 117 HWPFAIKGKDVHDTS--FEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSNFNSGQIKRIL 174
++ H + +V + + K + L + I I
Sbjct: 376 -DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTI-SIP 429
Query: 175 DCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLKE 234
+ +E+ L H V Y+ P +DD++
Sbjct: 430 S--------IYLELKVKLENEY-----ALHRSIVDHYNI-------PKT--FDSDDLIPP 467
Query: 235 IADKYRKSPAQVVLRYLVFLMVCRLSSGEHKVFVEQGSPTEEHAIQSYSHLPGELSNVCF 294
D+Y ++ G H +E + + + F
Sbjct: 468 YLDQY-------FYSHI----------GHHLKNIEHP--------ERMTLFRMVFLDFRF 502
Query: 295 TSQ---YDTTSGLSVRGTLVKLLQMF 317
Q +D+T+ + G+++ LQ
Sbjct: 503 LEQKIRHDSTA-WNASGSILNTLQQL 527
Score = 34.8 bits (79), Expect = 0.046
Identities = 44/341 (12%), Positives = 94/341 (27%), Gaps = 101/341 (29%)
Query: 46 YRHID--TAEVYQTEGDI----GEAIKEKINSGDIKREELFITTKVWITHF--EPDMVVQ 97
+ H+D T E DI +A + + D++ I +K I H D V
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 98 A-------CQ---NSCKK-----LGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHN----- 137
+K L ++Y + + + + + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 138 -------NVSIEETWRGMEKCVEK-------------GLAKSI----------------- 160
NVS + + + + + + G K+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 161 GVSNFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTN 220
+ N ++ L ++ P R K I + + L +
Sbjct: 183 KIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKS 240
Query: 221 PDKP--LLINDDVL-KEIADKYRKSPAQVVLRYLVFLMVCR--LSSGEHKVFVEQGSPTE 275
LL+ +V + + F + C+ L++ +V T+
Sbjct: 241 KPYENCLLVLLNVQNAKAWN--------------AFNLSCKILLTTRFKQV-------TD 279
Query: 276 EHAIQSYSHLPGELSNVCFTSQYDTTSGLSVRGTLVKLLQM 316
+ + +H+ + ++ T D L L+K L
Sbjct: 280 FLSAATTTHISLDHHSMTLTP--DEVKSL-----LLKYLDC 313
Score = 32.9 bits (74), Expect = 0.18
Identities = 22/154 (14%), Positives = 39/154 (25%), Gaps = 35/154 (22%)
Query: 164 NFNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDK 223
+F +G+ + I V F + P K
Sbjct: 8 DFETGEHQ--YQYKDILSVFED-------------AFVDNFDCKDVQDMP---------K 43
Query: 224 PLLINDDVLKEIADKYRKSPAQVVLRYLVFLMVCRLSSGEHKVFVEQGSPTEEHAIQSYS 283
+L +++ I S V +F + + FVE+ +Y
Sbjct: 44 SILSKEEI-DHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR------INYK 92
Query: 284 HLPGELSNVCFTSQYDTTSGLSVRGTLVKLLQMF 317
L + T + R L Q+F
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 53/277 (19%), Positives = 82/277 (29%), Gaps = 115/277 (41%)
Query: 26 QG--EPGSG-------DVKNAVLAAIDA------GYRHIDTAEVYQTE------GDIGEA 64
QG E G G V D G+ +D G+ G+
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 65 IKEK--------INSGDIKREELF--ITTKVWITHFEPD--------------MVVQ-AC 99
I+E I G +K E++F I F + +++ A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 100 QNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHN------NV-SIEET-----WRG 147
K GL D FA G H S GE+ +V SIE +RG
Sbjct: 1744 FEDLKSKGLIPADAT-----FA--G---H--SL-GEYAALASLADVMSIESLVEVVFYRG 1790
Query: 148 --MEKCVEKGLAKSIGVSNF-----NSGQIKRILD-------CAKIK--------PVNLQ 185
M+ V + +G SN+ N G++ ++ VN
Sbjct: 1791 MTMQVAVPRD---ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 186 IEVHPYLNQR--------------KLIDFCKKHNITV 208
+E NQ+ +++F K I +
Sbjct: 1848 VE-----NQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 30.0 bits (67), Expect = 1.5
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 32/96 (33%)
Query: 109 DYVDLYLIHWPFAIKGKD----VHDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVSN 164
D ++ L+ + KD V+DT + + L+ SI
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDT------------FDGSDL-----RVLSGSI---- 475
Query: 165 FNSGQIKRILDCAKIKPVNLQIEVHPYLNQRKLIDF 200
+RI+DC PV + ++DF
Sbjct: 476 -----SERIVDCIIRLPVKWETTTQ--FKATHILDF 504
Score = 29.2 bits (65), Expect = 2.1
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 56/138 (40%)
Query: 174 LDCAKIKPVNLQ---IEV--------HPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPD 222
+D +P+ L +E +Q + F K L P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQ-EQFNKI----------LPEPTEG-- 47
Query: 223 KPLLINDDVLKEIADKYRKSPAQVVLRYLVFLMVCRLSSGEHKVFVEQGSPTEEHAIQSY 282
DD E +PA++V ++L ++ S E + +
Sbjct: 48 ---FAADD---EPT-----TPAELVGKFLGYVS----------------SLVEPSKVGQF 80
Query: 283 SHLPGELSNV--CFTSQY 298
+ L+ F + Y
Sbjct: 81 DQV---LNLCLTEFENCY 95
Score = 28.5 bits (63), Expect = 3.6
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 16/105 (15%)
Query: 195 RKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDVLK--EIADKYRKSPAQVVLRYLV 252
+ + + H +S L NP L I+ K I + Y ++
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSA---------MI 1692
Query: 253 FLMVCRLSSGEHKVFVEQGSPTEEHAIQSYSHLPGELSNVCFTSQ 297
F + K+F E + + ++ G LS FT Q
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSY---TFRSEKGLLSATQFT-Q 1733
Score = 28.1 bits (62), Expect = 5.1
Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 61/169 (36%)
Query: 187 EVHPY---LNQRKLIDFCKKHNITVTAY----SPLGAPWTNPDKPLLI------------ 227
++H L Q K + + Y P+ L
Sbjct: 100 DIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 228 -------NDDVLKEIADKYRKSPAQVVLRYLVFLMVCRLSSGEHKVFVEQGSPTEEHAIQ 280
DD +E+ D Y+ V L+ LS + E+
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSE-----LIRTTLDAEKV--- 208
Query: 281 SYSH-------------LPGELSNVCFTSQYDTTSGLSVRGTLVKLLQM 316
++ P + Y + +S L+ ++Q+
Sbjct: 209 -FTQGLNILEWLENPSNTPDK--------DYLLSIPISC--PLIGVIQL 246
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus
thermophilus} PDB: 2yz5_A 2z4g_A
Length = 267
Score = 32.3 bits (74), Expect = 0.16
Identities = 27/221 (12%), Positives = 59/221 (26%), Gaps = 55/221 (24%)
Query: 30 GSGDVKNAVLAAIDAGYR------HIDTAEVYQTEGDIG----EAIKEKINSGDIKREEL 79
G + + A G + H Y E + + ++
Sbjct: 14 AEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALER--VRERAQ 71
Query: 80 FITTKV-----WITHFEPDMVVQACQNSCKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEG 134
+ + + E + ++ DYV + +H+ + + +
Sbjct: 72 DLYVGIGLEADFHPGTEGFL-----AQLLRRYPFDYV-IGSVHY---LGAWPLDHPDHQE 122
Query: 135 EHNNVSIEETWRG----MEKCVEKGLAKSIG----VSNFN--------SGQIKRILDCAK 178
E+ ++E +R +EK GL +IG F + L
Sbjct: 123 EYAWRDLKEVFRAYFQEVEKAARSGLFHAIGHLDLPKKFGHRLPEEALLELAEPALRAVA 182
Query: 179 IKPVNLQIEV----------HPYLNQRKLIDFCKKHNITVT 209
L ++V Y L+ ++ I +
Sbjct: 183 EA--GLFLDVNTAGLRRPAKEVYPA-PALLRRARELGIGLV 220
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate
isomerase/epimerase; 1.78A {Anabaena variabilis atcc
29413}
Length = 335
Score = 31.2 bits (70), Expect = 0.47
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 27 GEPGSGDVK-NAVLAAIDAGYRHIDTAEVYQTEGDIGEAIK 66
G + + + L I Y E++ +++
Sbjct: 254 GALHTSWLPWKSFLTPIVKVYDGPIAVEIFNAIPAFTNSLR 294
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.53
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 194 QRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLINDDV 231
+++ + KK ++ Y+ AP L I +
Sbjct: 18 EKQAL---KKLQASLKLYADDSAP------ALAIKATM 46
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 30.5 bits (68), Expect = 0.80
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 196 KLIDFCKKHNITV-----------TAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPA 244
+ ++HNI + + + L + K D LK +A+ + A
Sbjct: 95 AYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMVDTRKLQSYIDHALKPMANALKNEKA 154
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: CIT; 1.85A {Parabacteroides distasonis}
Length = 262
Score = 28.6 bits (64), Expect = 2.3
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 103 CKKLGLDYVDLYLIHWPFAIKGKDVHDTSFEGEHNNVSIEETWRGMEKCVEKGL-AKSIG 161
++LGL Y+++ +P G D F+ + + +E E KG+ G
Sbjct: 31 TQELGLKYIEI----YPGHKLGGKWGDKVFDFNLDAQTQKEI---KELAASKGIKIVGTG 83
Query: 162 VSNFNSGQ-IKRILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITV 208
V +++ AK + + + K++NI +
Sbjct: 84 VYVAEKSSDWEKMFKFAKAMDLEFITCEPALSDWDLVEKLSKQYNIKI 131
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 28.7 bits (65), Expect = 2.4
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 33 DVKNAVLAAIDAGYRHIDTAEVYQTEG--DIGEAIKEKINSG 72
++ A+ A++ G R D A ++G+ I + G
Sbjct: 321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEG 362
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside
hydrolase, marine polysaccharide degradation, marine
cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius}
PDB: 4ak7_A* 4ak6_A
Length = 404
Score = 28.6 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 202 KKHNITV-TAYSPLGAPWTNPDKPLLINDD 230
K+ I + A SP G WT DKP+L D
Sbjct: 192 VKNTIGMACADSPEG-LWTKTDKPVLEPSD 220
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.6 bits (64), Expect = 2.8
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 22 LGTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIK 75
+ QG +G + + AA + + + EA + +S +
Sbjct: 134 VDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCT 187
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 28.3 bits (63), Expect = 3.1
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 196 KLIDFCKKHNI-TVTAYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVV 247
++I+ K + V +P++ + K+IAD+Y+ P +
Sbjct: 78 EVINGALKRGLAVVINIHHYEELMNDPEEHKERFLALWKQIADRYKDYPETLF 130
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycos hydrolase, membrane, palmitate; HET: P4G;
1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Length = 642
Score = 28.7 bits (64), Expect = 3.2
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 33 DVKNAVLAAIDAG------YRHIDTAEVYQTEGDIGEAIKEKINSGDIKREEL 79
+ AV+ A+ AG + + + Q + +A+KE + +GDI +++
Sbjct: 330 GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQI 382
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Length = 273
Score = 28.3 bits (63), Expect = 3.3
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 120 FAIKGKDV--HDTSFEGEHNNVSIEETWRGMEKCVEKGLAKSIGVS-----NFNSGQIKR 172
F +K H EG+ +E R +E +E+ K F+ ++
Sbjct: 81 FTVKTPGSVTHVLWKEGKDPKEDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEY 140
Query: 173 ILDCAKIKPVNLQIEV-HPYLNQRKLIDFCKKHNITVTAYSPLGAPWTNPDKPLLIND 229
+ + P L +E H ++ + +F + H IT P P +P+ D
Sbjct: 141 LEKLRESYPYELAVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTD 198
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 28.3 bits (64), Expect = 3.8
Identities = 3/24 (12%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 195 RKLIDFCKKHNITV---TAYSPLG 215
+ + +KH + + Y
Sbjct: 181 EEALGLARKHGLWLIHDNPYVDQV 204
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 28.3 bits (64), Expect = 3.9
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 195 RKLIDFCKKHNITV---TAYSPLG 215
+ I K + + AY G
Sbjct: 204 DEAIAKFKGTDTKIVHDFAYGAFG 227
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 27.9 bits (63), Expect = 4.8
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 33 DVKNAVLAAIDAGYR--HIDTAEVYQTEGDIGEAIKEKINSGD 73
D++NA+ A+ G ++ T+ ++G+ I E + D
Sbjct: 318 DIENAISLALAQGKMTKDLNAKSYLNTD-EMGDCILEILKEND 359
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 27.9 bits (63), Expect = 4.9
Identities = 4/24 (16%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 195 RKLIDFCKKHNITV---TAYSPLG 215
+++ K++++ V AY+ +
Sbjct: 195 ERVVALAKQYDVMVVHDLAYADIV 218
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 27.9 bits (63), Expect = 4.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 33 DVKNAVLAAIDAGYRHIDTAE----VYQTEGDIGEAIKEKINSGD 73
V+ AV +D G R D A V T+ +G A+ +N D
Sbjct: 315 RVEAAVQRVLDQGLRTADIAAPGTPVIGTK-AMGAAVVNALNLKD 358
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM-barrel,
alpha-beta-alpha sandwich; HET: MSE; 2.25A
{Synechococcus SP} PDB: 3sqm_A*
Length = 535
Score = 27.9 bits (62), Expect = 5.7
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 32 GDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIKREELF------ITTKV 85
V+ AI AG D + AI+ I +G + ++ K
Sbjct: 291 AAPDTVVVQAIAAG---ADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQ 347
Query: 86 WITHFEPDMVVQACQNSCKK 105
I P Q +
Sbjct: 348 KILTATPSTFPQGISGDRPE 367
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 27.6 bits (62), Expect = 6.1
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 195 RKLIDFCKKHNITV---TAYSPLGAPWTNPDKP 224
+L++F +K+ + AY+ +NPD P
Sbjct: 232 TELVNFARKNGSILVYDAAYALYI---SNPDCP 261
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 27.6 bits (62), Expect = 6.2
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 195 RKLIDFCKKHNITVT---AYSPLG 215
+++ D K+ + YS +
Sbjct: 191 KEVFDLQDKYGFIIASDECYSEIY 214
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics
center target 1957B, structural genomics, PSI; 2.70A
{Bacillus halodurans}
Length = 296
Score = 27.2 bits (61), Expect = 6.5
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 23 GTWQGEPGSGDVKNAVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKINSGDIK 75
G + D ++ V++ + + EV + I +AI I +G
Sbjct: 244 GKLESGNLYYDFQDGVVSL--GEFSSVVPDEVREQ---ITDAISTYIQTGQFP 291
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism,
neoagarobiose, 3,6-anhydro-L-galactose, ALP
galactopyranose, bioenergy; HET: GLA; 1.55A
{Saccharophagus degradans} PDB: 3r4y_A*
Length = 374
Score = 27.5 bits (60), Expect = 6.7
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 209 TAYSPLGAPWTNPDKPLLINDD 230
+ SP G PWT D P+L ++
Sbjct: 160 YSDSPFG-PWTKSDAPILSPEN 180
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 27.2 bits (60), Expect = 7.3
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 196 KLIDFCKKHNITVT-AYSPLGAPWTNPDKPLLINDDVLKEIADKYRKSPAQVV 247
++D K+++ V + PDK + ++ K++A ++ P ++
Sbjct: 86 HVVDVALKNDLVVIINCHHFEELYQAPDKYGPVLVEIWKQVAQAFKDYPDKLF 138
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 27.2 bits (61), Expect = 8.4
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 37 AVLAAIDAGYRHIDTAEVYQTEGDIGEAIKEKIN---SGDI 74
A+ I AG + D +AI+ + GD+
Sbjct: 457 AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDV 497
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 27.1 bits (61), Expect = 8.4
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 5/37 (13%)
Query: 173 ILDCAKIKPVNLQIEVHPYLNQRKLIDFCKKHNITVT 209
KI + I H L FCK+ I
Sbjct: 61 TACSEKISNTAISISDHT-----ALAQFCKEKKIEFV 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,027,905
Number of extensions: 306493
Number of successful extensions: 1207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 96
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)