Query psy15051
Match_columns 1065
No_of_seqs 580 out of 3805
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 100.0 1.8E-63 3.8E-68 598.3 38.6 418 553-1054 4-527 (551)
2 TIGR02403 trehalose_treC alpha 100.0 1.2E-62 2.6E-67 592.1 39.5 414 556-1054 1-521 (543)
3 TIGR02456 treS_nterm trehalose 100.0 8.9E-58 1.9E-62 551.0 40.3 385 555-1040 1-499 (539)
4 PRK10785 maltodextrin glucosid 100.0 1.2E-55 2.7E-60 536.4 36.3 362 551-1040 113-568 (598)
5 PRK09505 malS alpha-amylase; R 100.0 2.1E-48 4.6E-53 471.7 31.1 364 550-1030 180-682 (683)
6 TIGR03852 sucrose_gtfA sucrose 100.0 1.1E-46 2.4E-51 436.5 24.5 243 35-470 2-257 (470)
7 PRK10933 trehalose-6-phosphate 100.0 3.7E-47 8E-52 457.2 20.7 310 24-504 4-336 (551)
8 TIGR02402 trehalose_TreZ malto 100.0 3.7E-45 8.1E-50 439.1 28.3 350 557-1036 91-541 (542)
9 KOG0471|consensus 100.0 7.3E-45 1.6E-49 435.3 27.0 396 553-1043 11-517 (545)
10 TIGR02104 pulA_typeI pullulana 100.0 9E-45 2E-49 442.9 28.3 379 557-1060 125-604 (605)
11 TIGR02403 trehalose_treC alpha 100.0 2.8E-45 6E-50 441.7 16.7 306 27-504 1-330 (543)
12 PRK13840 sucrose phosphorylase 100.0 2.9E-43 6.2E-48 410.4 30.3 245 29-469 2-259 (495)
13 PRK12313 glycogen branching en 100.0 3.8E-43 8.3E-48 431.0 31.9 362 556-1060 144-589 (633)
14 TIGR02100 glgX_debranch glycog 100.0 1.7E-42 3.7E-47 423.8 34.1 368 556-1056 152-662 (688)
15 TIGR01515 branching_enzym alph 100.0 3.2E-42 7E-47 420.2 30.3 351 556-1059 135-575 (613)
16 PRK05402 glycogen branching en 100.0 3.7E-42 8E-47 427.0 30.9 395 557-1060 239-685 (726)
17 PRK14706 glycogen branching en 100.0 1.5E-41 3.2E-46 412.0 31.6 358 557-1060 142-584 (639)
18 PRK03705 glycogen debranching 100.0 5.7E-41 1.2E-45 407.5 30.1 355 556-1053 147-632 (658)
19 PRK14510 putative bifunctional 100.0 1.8E-40 3.8E-45 426.3 29.7 357 556-1040 155-648 (1221)
20 PRK12568 glycogen branching en 100.0 8.8E-40 1.9E-44 394.9 32.3 395 557-1060 244-690 (730)
21 KOG0471|consensus 100.0 3.2E-41 6.8E-46 404.0 18.7 338 24-505 11-367 (545)
22 COG0366 AmyA Glycosidases [Car 100.0 1.3E-39 2.8E-44 392.3 31.2 396 560-1039 1-493 (505)
23 PRK09441 cytoplasmic alpha-amy 100.0 9.4E-40 2E-44 389.7 28.3 310 597-1040 22-440 (479)
24 TIGR02456 treS_nterm trehalose 100.0 3.8E-41 8.2E-46 406.6 15.7 291 26-496 1-310 (539)
25 TIGR02102 pullulan_Gpos pullul 100.0 1.2E-38 2.5E-43 399.7 30.0 387 557-1057 449-974 (1111)
26 PRK14705 glycogen branching en 100.0 4.5E-38 9.7E-43 396.4 32.9 350 558-1060 746-1184(1224)
27 PF00128 Alpha-amylase: Alpha 100.0 1.8E-38 4E-43 357.0 18.0 247 598-910 5-313 (316)
28 PLN02960 alpha-amylase 100.0 2.4E-37 5.3E-42 373.0 28.4 366 554-1060 390-851 (897)
29 PLN00196 alpha-amylase; Provis 100.0 8.2E-35 1.8E-39 338.5 27.3 327 558-1056 23-421 (428)
30 PRK10785 maltodextrin glucosid 100.0 9.2E-36 2E-40 362.6 14.8 218 22-425 113-374 (598)
31 PLN02877 alpha-amylase/limit d 100.0 2.7E-34 5.9E-39 352.9 27.5 394 557-1041 337-925 (970)
32 TIGR02103 pullul_strch alpha-1 100.0 4.6E-34 9.9E-39 352.4 27.8 392 556-1040 249-852 (898)
33 PLN02447 1,4-alpha-glucan-bran 100.0 1.1E-33 2.4E-38 342.5 30.3 362 558-1060 228-691 (758)
34 TIGR02455 TreS_stutzeri trehal 100.0 9.1E-33 2E-37 322.2 35.3 374 558-1055 50-656 (688)
35 COG0366 AmyA Glycosidases [Car 100.0 3.2E-34 7E-39 345.4 18.1 300 31-506 1-328 (505)
36 PRK09505 malS alpha-amylase; R 100.0 1.4E-33 3E-38 342.8 19.5 343 22-504 181-577 (683)
37 PLN02361 alpha-amylase 100.0 4.4E-32 9.6E-37 312.1 28.0 299 596-1056 28-395 (401)
38 COG0296 GlgB 1,4-alpha-glucan 100.0 9.8E-32 2.1E-36 318.1 20.3 359 556-1056 141-585 (628)
39 PF00128 Alpha-amylase: Alpha 100.0 1.5E-32 3.3E-37 308.8 5.6 259 50-506 1-284 (316)
40 COG1523 PulA Type II secretory 100.0 2E-30 4.2E-35 312.0 23.6 352 557-1041 169-658 (697)
41 TIGR02455 TreS_stutzeri trehal 100.0 2.5E-29 5.3E-34 293.6 15.5 281 29-470 50-366 (688)
42 PLN02784 alpha-amylase 100.0 5.3E-28 1.1E-32 291.0 23.9 324 559-1056 498-887 (894)
43 TIGR02401 trehalose_TreY malto 100.0 9.4E-28 2E-32 292.2 24.5 134 865-1031 619-769 (825)
44 PRK12313 glycogen branching en 99.9 2.8E-27 6.1E-32 291.0 18.8 213 28-425 145-363 (633)
45 PRK14511 maltooligosyl trehalo 99.9 3E-25 6.4E-30 271.4 25.8 133 886-1055 706-854 (879)
46 PLN03244 alpha-amylase; Provis 99.9 4.3E-24 9.3E-29 253.7 28.0 304 631-1060 427-826 (872)
47 TIGR01515 branching_enzym alph 99.9 5.2E-25 1.1E-29 269.3 18.9 208 29-425 137-350 (613)
48 PRK09441 cytoplasmic alpha-amy 99.9 5.9E-25 1.3E-29 262.7 17.6 114 30-191 3-117 (479)
49 PRK05402 glycogen branching en 99.9 3.5E-25 7.6E-30 275.6 15.6 98 29-173 240-341 (726)
50 TIGR02402 trehalose_TreZ malto 99.9 3.2E-25 6.9E-30 267.0 13.9 94 28-173 91-186 (542)
51 KOG0470|consensus 99.9 1.9E-24 4.2E-29 253.0 17.3 91 559-664 229-330 (757)
52 PRK12568 glycogen branching en 99.9 1.3E-24 2.7E-29 263.7 15.6 213 28-425 244-463 (730)
53 PRK13840 sucrose phosphorylase 99.9 3.6E-24 7.9E-29 250.6 18.6 346 558-1040 2-477 (495)
54 TIGR02100 glgX_debranch glycog 99.9 1.1E-24 2.3E-29 267.6 13.5 110 27-173 152-271 (688)
55 TIGR03852 sucrose_gtfA sucrose 99.9 2.6E-24 5.7E-29 250.3 13.0 346 565-1036 3-467 (470)
56 PRK03705 glycogen debranching 99.9 2.6E-24 5.6E-29 262.3 13.2 108 27-173 147-268 (658)
57 PRK14706 glycogen branching en 99.9 4.3E-24 9.3E-29 259.9 14.8 214 29-426 143-360 (639)
58 PLN02960 alpha-amylase 99.9 1.7E-23 3.7E-28 253.6 16.1 218 26-426 391-613 (897)
59 PRK14705 glycogen branching en 99.9 1.5E-23 3.2E-28 265.6 15.5 210 28-426 745-960 (1224)
60 TIGR02104 pulA_typeI pullulana 99.9 5.3E-23 1.1E-27 251.9 13.0 114 28-173 125-255 (605)
61 PLN00196 alpha-amylase; Provis 99.9 5.3E-22 1.1E-26 231.5 16.3 93 29-173 23-118 (428)
62 smart00642 Aamy Alpha-amylase 99.9 1.6E-22 3.5E-27 207.5 9.4 76 564-654 1-79 (166)
63 COG0296 GlgB 1,4-alpha-glucan 99.9 6.2E-22 1.4E-26 235.1 15.2 89 28-149 142-231 (628)
64 PRK14510 putative bifunctional 99.9 4.9E-22 1.1E-26 256.6 15.0 109 28-173 156-273 (1221)
65 TIGR02102 pullulan_Gpos pullul 99.9 1.1E-21 2.3E-26 247.5 13.4 121 28-173 449-581 (1111)
66 PLN02447 1,4-alpha-glucan-bran 99.9 2E-21 4.3E-26 236.4 15.3 97 29-173 228-326 (758)
67 PLN02361 alpha-amylase 99.8 1.6E-20 3.4E-25 216.7 14.5 91 30-173 11-102 (401)
68 PLN02784 alpha-amylase 99.8 5.1E-20 1.1E-24 222.5 13.9 95 30-173 498-594 (894)
69 TIGR02103 pullul_strch alpha-1 99.8 7.5E-20 1.6E-24 227.0 13.4 120 28-173 250-430 (898)
70 COG1523 PulA Type II secretory 99.8 3.9E-19 8.5E-24 214.8 12.5 113 28-173 169-291 (697)
71 PLN02877 alpha-amylase/limit d 99.8 5.3E-19 1.1E-23 218.7 13.5 121 28-173 337-492 (970)
72 smart00642 Aamy Alpha-amylase 99.7 3.6E-18 7.9E-23 175.3 6.8 92 35-173 1-96 (166)
73 TIGR02401 trehalose_TreY malto 99.7 1.4E-16 2.9E-21 195.2 11.7 90 49-192 12-103 (825)
74 PRK14507 putative bifunctional 99.7 1.3E-16 2.8E-21 206.7 11.8 96 598-758 759-860 (1693)
75 KOG0470|consensus 99.6 3.2E-16 6.9E-21 184.6 8.9 99 30-173 229-337 (757)
76 PLN03244 alpha-amylase; Provis 99.5 4.6E-14 9.9E-19 169.1 14.1 87 301-426 499-588 (872)
77 COG3280 TreY Maltooligosyl tre 99.4 1.8E-13 4E-18 160.6 7.0 95 598-757 20-120 (889)
78 TIGR01531 glyc_debranch glycog 99.3 1.9E-12 4.2E-17 163.5 9.4 82 598-744 133-219 (1464)
79 PRK14511 maltooligosyl trehalo 99.1 2.3E-11 5E-16 150.3 5.2 88 50-191 17-106 (879)
80 KOG2212|consensus 99.1 1.7E-09 3.7E-14 117.3 16.9 67 604-671 48-121 (504)
81 PRK14507 putative bifunctional 99.1 7.2E-11 1.6E-15 154.2 5.1 90 49-192 754-845 (1693)
82 KOG2212|consensus 98.7 4E-07 8.6E-12 99.3 15.3 105 17-173 14-121 (504)
83 TIGR01531 glyc_debranch glycog 98.5 6.7E-08 1.4E-12 123.3 4.8 88 50-194 129-222 (1464)
84 PF11941 DUF3459: Domain of un 98.5 5.6E-07 1.2E-11 82.8 8.8 70 983-1058 1-74 (89)
85 PF14701 hDGE_amylase: glucano 98.5 4.7E-07 1E-11 104.5 9.8 83 598-744 23-111 (423)
86 COG3280 TreY Maltooligosyl tre 98.3 3.7E-07 7.9E-12 108.6 4.5 76 51-173 17-94 (889)
87 PF14872 GHL5: Hypothetical gl 98.0 0.00021 4.5E-09 84.5 18.0 77 980-1056 700-791 (811)
88 PF14872 GHL5: Hypothetical gl 97.1 0.0032 7E-08 74.8 12.1 37 300-363 356-392 (811)
89 KOG3625|consensus 97.1 0.00039 8.5E-09 84.3 4.4 84 598-745 143-232 (1521)
90 PF02324 Glyco_hydro_70: Glyco 96.6 0.0026 5.7E-08 76.2 6.0 71 597-667 587-669 (809)
91 PF14871 GHL6: Hypothetical gl 96.0 0.098 2.1E-06 52.0 12.4 64 600-667 3-66 (132)
92 PF02324 Glyco_hydro_70: Glyco 95.3 0.018 3.9E-07 69.3 5.0 93 28-149 562-664 (809)
93 PF14701 hDGE_amylase: glucano 95.1 0.022 4.7E-07 66.6 4.8 83 50-173 19-103 (423)
94 PF11852 DUF3372: Domain of un 94.9 0.025 5.5E-07 57.9 4.0 63 979-1041 42-125 (168)
95 PF10438 Cyc-maltodext_C: Cycl 94.3 0.084 1.8E-06 47.4 5.2 40 1004-1043 4-43 (78)
96 PF02638 DUF187: Glycosyl hydr 93.9 0.33 7.1E-06 55.5 10.5 36 302-364 130-166 (311)
97 PF02806 Alpha-amylase_C: Alph 93.8 0.064 1.4E-06 49.8 3.9 53 1007-1060 7-61 (95)
98 cd06593 GH31_xylosidase_YicI Y 91.7 0.92 2E-05 51.7 10.3 116 641-794 20-145 (308)
99 PF14871 GHL6: Hypothetical gl 91.3 0.6 1.3E-05 46.4 7.0 24 125-149 37-61 (132)
100 COG1649 Uncharacterized protei 89.9 1.6 3.5E-05 51.3 10.0 32 46-78 57-88 (418)
101 cd06592 GH31_glucosidase_KIAA1 86.7 4.1 8.9E-05 46.4 10.6 58 598-666 31-91 (303)
102 PF00150 Cellulase: Cellulase 86.3 0.9 1.9E-05 50.3 4.9 58 599-667 23-84 (281)
103 PF02638 DUF187: Glycosyl hydr 86.1 3.1 6.8E-05 47.5 9.2 68 598-665 20-90 (311)
104 cd06593 GH31_xylosidase_YicI Y 81.8 5.6 0.00012 45.3 8.9 37 301-364 125-161 (308)
105 cd06562 GH20_HexA_HexB-like Be 81.7 8.5 0.00018 44.8 10.5 67 598-667 19-92 (348)
106 PRK14508 4-alpha-glucanotransf 81.1 1.7 3.7E-05 52.8 4.6 47 598-644 28-74 (497)
107 PF14488 DUF4434: Domain of un 79.2 4.1 8.9E-05 42.2 6.1 65 598-667 21-87 (166)
108 PF02065 Melibiase: Melibiase; 77.6 8.9 0.00019 45.3 9.0 52 981-1032 322-378 (394)
109 cd06592 GH31_glucosidase_KIAA1 77.3 3 6.5E-05 47.5 4.8 36 300-362 129-165 (303)
110 cd06591 GH31_xylosidase_XylS X 77.1 11 0.00024 43.2 9.5 117 641-793 20-143 (319)
111 cd06568 GH20_SpHex_like A subg 77.0 14 0.00031 42.6 10.3 67 598-667 19-97 (329)
112 cd02742 GH20_hexosaminidase Be 76.4 7.1 0.00015 44.4 7.6 67 598-667 17-94 (303)
113 cd06563 GH20_chitobiase-like T 76.1 15 0.00032 42.9 10.3 70 598-667 19-108 (357)
114 COG3867 Arabinogalactan endo-1 73.4 6.3 0.00014 43.8 5.7 18 600-617 66-83 (403)
115 PRK11052 malQ 4-alpha-glucanot 73.3 7.1 0.00015 49.4 7.1 63 574-651 157-223 (695)
116 cd06598 GH31_transferase_CtsZ 70.5 20 0.00044 41.1 9.4 121 641-794 20-150 (317)
117 PF03198 Glyco_hydro_72: Gluca 70.2 4.9 0.00011 45.4 4.2 48 598-667 54-101 (314)
118 PF08533 Glyco_hydro_42C: Beta 70.1 5.5 0.00012 33.5 3.6 30 1011-1040 2-31 (58)
119 PF07745 Glyco_hydro_53: Glyco 70.1 6.5 0.00014 45.2 5.3 54 600-667 27-80 (332)
120 PF02065 Melibiase: Melibiase; 69.6 6.5 0.00014 46.4 5.2 41 299-366 156-197 (394)
121 PF02446 Glyco_hydro_77: 4-alp 69.4 4.8 0.0001 49.1 4.2 59 575-648 11-71 (496)
122 smart00632 Aamy_C Aamy_C domai 69.2 14 0.0003 33.3 6.2 41 1008-1053 7-48 (81)
123 COG1649 Uncharacterized protei 69.0 6.2 0.00013 46.6 4.8 63 598-664 65-134 (418)
124 PRK10658 putative alpha-glucos 67.2 22 0.00047 45.0 9.5 117 643-794 281-404 (665)
125 cd06564 GH20_DspB_LnbB-like Gl 66.8 28 0.00061 40.1 9.6 65 598-667 18-104 (326)
126 PF00728 Glyco_hydro_20: Glyco 65.8 9 0.0002 44.3 5.5 67 598-667 19-95 (351)
127 cd06603 GH31_GANC_GANAB_alpha 65.1 21 0.00045 41.4 8.2 119 640-794 19-145 (339)
128 COG2730 BglC Endoglucanase [Ca 64.5 9 0.0002 45.5 5.2 59 600-667 76-138 (407)
129 TIGR03849 arch_ComA phosphosul 64.4 11 0.00024 41.2 5.3 51 599-668 73-123 (237)
130 cd06562 GH20_HexA_HexB-like Be 61.6 8.1 0.00018 44.9 4.0 31 129-173 66-97 (348)
131 cd06570 GH20_chitobiase-like_1 61.6 58 0.0013 37.3 10.8 67 598-667 19-90 (311)
132 cd06602 GH31_MGAM_SI_GAA This 61.1 38 0.00083 39.2 9.4 119 640-794 19-150 (339)
133 PF13200 DUF4015: Putative gly 61.0 26 0.00057 40.1 7.8 68 598-667 14-83 (316)
134 PLN02950 4-alpha-glucanotransf 59.7 15 0.00033 47.9 6.3 79 554-649 257-340 (909)
135 PF01301 Glyco_hydro_35: Glyco 59.6 5.1 0.00011 46.0 1.9 57 598-665 25-83 (319)
136 PF13200 DUF4015: Putative gly 59.5 54 0.0012 37.6 9.9 28 338-365 123-150 (316)
137 PLN02635 disproportionating en 58.4 16 0.00034 44.9 5.8 69 562-647 31-104 (538)
138 cd06599 GH31_glycosidase_Aec37 58.1 28 0.0006 39.9 7.5 62 598-666 30-94 (317)
139 PF02679 ComA: (2R)-phospho-3- 58.1 11 0.00023 41.5 3.9 54 598-670 85-138 (244)
140 cd06594 GH31_glucosidase_YihQ 57.9 25 0.00054 40.4 7.1 65 598-667 24-93 (317)
141 cd06569 GH20_Sm-chitobiase-lik 54.5 24 0.00051 42.5 6.4 70 598-667 23-119 (445)
142 cd06570 GH20_chitobiase-like_1 54.4 17 0.00036 41.7 4.8 31 129-173 64-95 (311)
143 PLN03236 4-alpha-glucanotransf 54.1 19 0.00042 45.7 5.7 76 556-648 59-139 (745)
144 cd06568 GH20_SpHex_like A subg 53.4 14 0.0003 42.7 4.0 32 128-173 70-102 (329)
145 PRK10426 alpha-glucosidase; Pr 53.2 71 0.0015 40.3 10.5 65 598-667 222-291 (635)
146 PLN02635 disproportionating en 53.1 95 0.0021 38.3 11.2 23 46-69 42-65 (538)
147 PLN03059 beta-galactosidase; P 51.6 19 0.00041 46.2 5.0 54 599-664 61-117 (840)
148 KOG3625|consensus 50.6 13 0.00028 47.0 3.3 83 50-173 139-223 (1521)
149 PRK10658 putative alpha-glucos 49.5 16 0.00036 46.1 4.2 33 302-361 385-417 (665)
150 cd06599 GH31_glycosidase_Aec37 48.3 20 0.00043 41.2 4.2 25 339-363 144-169 (317)
151 PF02449 Glyco_hydro_42: Beta- 47.6 25 0.00054 41.2 5.1 57 598-667 11-69 (374)
152 PF09260 DUF1966: Domain of un 47.4 20 0.00043 33.4 3.3 52 1005-1056 2-58 (91)
153 cd06604 GH31_glucosidase_II_Ma 46.7 82 0.0018 36.4 9.1 117 642-794 21-145 (339)
154 cd06594 GH31_glucosidase_YihQ 46.5 18 0.0004 41.4 3.6 36 301-363 131-167 (317)
155 PF01055 Glyco_hydro_31: Glyco 45.9 39 0.00085 40.4 6.5 59 598-667 44-105 (441)
156 PF07745 Glyco_hydro_53: Glyco 45.6 35 0.00076 39.4 5.7 21 129-149 54-75 (332)
157 KOG1065|consensus 44.2 1.3E+02 0.0028 38.5 10.6 150 598-796 278-435 (805)
158 PF13204 DUF4038: Protein of u 43.7 34 0.00074 38.7 5.2 63 600-664 33-107 (289)
159 cd06600 GH31_MGAM-like This fa 43.5 1.1E+02 0.0023 35.2 9.2 115 641-794 20-145 (317)
160 cd06565 GH20_GcnA-like Glycosy 42.8 43 0.00093 38.1 5.8 61 598-667 18-82 (301)
161 cd06597 GH31_transferase_CtsY 42.5 71 0.0015 37.0 7.7 23 645-667 85-107 (340)
162 COG1501 Alpha-glucosidases, fa 41.6 25 0.00055 45.2 4.1 38 301-365 380-418 (772)
163 cd06591 GH31_xylosidase_XylS X 40.4 30 0.00065 39.7 4.1 37 301-364 124-161 (319)
164 PF13380 CoA_binding_2: CoA bi 40.1 37 0.0008 32.9 4.1 42 598-664 67-108 (116)
165 COG3345 GalA Alpha-galactosida 39.9 1.1E+02 0.0023 37.4 8.4 69 588-659 301-369 (687)
166 TIGR03356 BGL beta-galactosida 39.3 40 0.00087 40.4 5.1 55 598-666 55-115 (427)
167 PF09083 DUF1923: Domain of un 37.5 1.2E+02 0.0026 25.2 5.8 38 1000-1038 1-38 (64)
168 COG1809 (2R)-phospho-3-sulfola 37.4 58 0.0013 35.1 5.2 52 598-668 91-142 (258)
169 smart00812 Alpha_L_fucos Alpha 36.1 71 0.0015 37.8 6.4 65 598-663 82-146 (384)
170 COG3867 Arabinogalactan endo-1 34.3 70 0.0015 35.9 5.4 20 130-149 98-121 (403)
171 cd02742 GH20_hexosaminidase Be 32.8 29 0.00063 39.5 2.4 32 128-173 67-99 (303)
172 COG4943 Predicted signal trans 32.3 35 0.00076 40.8 3.0 61 560-667 412-480 (524)
173 cd06563 GH20_chitobiase-like T 31.7 35 0.00076 39.8 2.9 32 128-173 81-113 (357)
174 PTZ00445 p36-lilke protein; Pr 31.4 74 0.0016 34.3 4.9 61 598-664 30-97 (219)
175 PRK10076 pyruvate formate lyas 31.3 93 0.002 33.6 5.9 63 599-663 147-211 (213)
176 PF00728 Glyco_hydro_20: Glyco 31.3 33 0.00072 39.6 2.6 31 129-173 69-100 (351)
177 cd06565 GH20_GcnA-like Glycosy 30.6 55 0.0012 37.3 4.2 31 128-172 55-86 (301)
178 cd06597 GH31_transferase_CtsY 29.9 39 0.00084 39.2 2.8 37 301-364 152-189 (340)
179 PF01120 Alpha_L_fucos: Alpha- 29.6 57 0.0012 37.9 4.2 66 598-664 92-157 (346)
180 KOG0496|consensus 29.2 70 0.0015 39.7 4.8 58 600-666 52-109 (649)
181 cd06564 GH20_DspB_LnbB-like Gl 29.0 38 0.00081 39.0 2.5 32 128-173 77-109 (326)
182 PF10566 Glyco_hydro_97: Glyco 28.2 1.1E+02 0.0024 34.3 5.9 62 598-667 33-95 (273)
183 cd06595 GH31_xylosidase_XylS-l 27.6 3.4E+02 0.0075 30.6 9.9 20 641-660 21-40 (292)
184 COG1501 Alpha-glucosidases, fa 27.5 1.3E+02 0.0028 38.9 7.1 62 720-790 331-396 (772)
185 PF08821 CGGC: CGGC domain; I 27.2 1.9E+02 0.0041 27.8 6.5 59 591-663 46-104 (107)
186 COG2200 Rtn c-di-GMP phosphodi 27.1 67 0.0015 35.6 4.0 79 642-731 133-214 (256)
187 TIGR01210 conserved hypothetic 26.9 84 0.0018 36.0 4.9 60 600-668 117-178 (313)
188 cd06569 GH20_Sm-chitobiase-lik 25.9 48 0.001 39.9 2.8 31 129-173 93-124 (445)
189 cd02875 GH18_chitobiase Chitob 24.7 1.8E+02 0.0039 34.0 7.1 19 129-149 62-81 (358)
190 PRK01060 endonuclease IV; Prov 24.0 1.8E+02 0.004 32.2 6.8 51 598-661 13-63 (281)
191 COG3589 Uncharacterized conser 24.0 52 0.0011 37.6 2.3 52 601-667 20-71 (360)
192 TIGR00539 hemN_rel putative ox 22.8 1.2E+02 0.0025 35.5 5.1 59 600-667 100-159 (360)
193 PRK13210 putative L-xylulose 5 22.4 1.7E+02 0.0037 32.4 6.2 54 598-663 17-70 (284)
194 PLN02763 hydrolase, hydrolyzin 22.3 3.5E+02 0.0076 35.9 9.5 114 641-794 197-322 (978)
195 PRK15452 putative protease; Pr 22.2 1.6E+02 0.0034 35.6 6.1 53 600-665 13-66 (443)
196 PRK08207 coproporphyrinogen II 21.2 1.2E+02 0.0026 37.1 4.8 59 600-667 269-328 (488)
197 PRK08208 coproporphyrinogen II 20.3 1.2E+02 0.0027 36.2 4.8 59 600-667 141-200 (430)
198 PF05913 DUF871: Bacterial pro 20.1 77 0.0017 37.1 2.8 54 599-667 16-69 (357)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.8e-63 Score=598.35 Aligned_cols=418 Identities=30% Similarity=0.591 Sum_probs=341.6
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.|.||+++|||||+|++|.+++++++|||+ ||+++|||||+||||+|||+||++++..+|||++.
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~---------------gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~ 68 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLR---------------GVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA 68 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHH---------------HHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc
Confidence 478999999999999999999999999999 99999999999999999999999998878999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||+.|||+|||++||++||++|
T Consensus 69 d~~~id~~~Gt~~d~~~lv~~~---------------------------------------------------------- 90 (551)
T PRK10933 69 NYTAIDPTYGTLDDFDELVAQA---------------------------------------------------------- 90 (551)
T ss_pred cCCCcCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCC------CCCC--c----------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTP------PNNW--K---------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~------~~~W--~---------- 774 (1065)
|++||+||+|+|+||++.+|+||+++....++|.+||+|.++.++.+... .+.| .
T Consensus 91 -------h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 91 -------KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred -------HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 99999999999999999999999998767889999999986432221000 0111 1
Q ss_pred ------cccCCCHHHHHHHHHHHHh----------------c-------------------------------C------
Q psy15051 775 ------HINITSREVMRSQKDVVQS----------------F-------------------------------P------ 795 (1065)
Q Consensus 775 ------~ln~~n~~v~~~l~~~lk~----------------~-------------------------------~------ 795 (1065)
.||+.||+|+++|.++++. + +
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTP 243 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcc
Confidence 1999999999999998321 0 0
Q ss_pred CceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH--hhc------CCChHHHHHHHHHHhhcCCCCCccccccc
Q psy15051 796 LILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK--FGA------TSNAKDLENVVNAYLKSLPSGKWSSWMVG 867 (1065)
Q Consensus 796 ~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~--~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~fle 867 (1065)
++++++||.|..+++....|.... ...+++.|+|..... +.+ ..+...++..+..+...+....+..+|++
T Consensus 244 ~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 322 (551)
T PRK10933 244 RGLMTVGEMSSTSLEHCQRYAALT-GSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWC 322 (551)
T ss_pred cCcEEEEeecCCCHHHHHHhhccc-CCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccCeeccccC
Confidence 035799999986666666664321 245677777754321 111 12345667777777666666678888999
Q ss_pred CCChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc------------
Q psy15051 868 GHSITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD------------ 928 (1065)
Q Consensus 868 nHD~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~------------ 928 (1065)
|||++|+++++|.+ .++++++++||+||+|+||||||+||.+.. ...++++|+++.+....
T Consensus 323 NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~ 402 (551)
T PRK10933 323 NHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELL 402 (551)
T ss_pred CCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999999743 367788999999999999999999999853 23456777776554321
Q ss_pred -cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc
Q psy15051 929 -NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP 1007 (1065)
Q Consensus 929 -~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~ 1007 (1065)
.....+||++|.||+|++..++|||+++||++++++|..+|++.|...+.+++++||+||+|||++|+|+.|+++.+..
T Consensus 403 ~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~ 482 (551)
T PRK10933 403 AILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLP 482 (551)
T ss_pred hhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEecc
Confidence 1334589999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1008 -NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1008 -~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++.|++|.|+.+++.++||+|+++++++++++. +.+.+++++++
T Consensus 483 ~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~---~~~~~~~~l~~ 527 (551)
T PRK10933 483 NHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQ---MRGNWQLLMHN 527 (551)
T ss_pred CCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCc---ccCCceEEeec
Confidence 457999999988899999999999999998873 22455666665
No 2
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.2e-62 Score=592.10 Aligned_cols=414 Identities=34% Similarity=0.617 Sum_probs=341.5
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCc
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHT 635 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~ 635 (1065)
||+++|||||+|++|.++++++.|||+ ||+++|+|||+|||++|||+||+++++.++||++.||+
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~---------------gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~ 65 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLR---------------GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYY 65 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHH---------------HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccC
Confidence 999999999999999999999999999 99999999999999999999999999888999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
.|||+|||++||++||++|
T Consensus 66 ~id~~~Gt~~~~~~lv~~a------------------------------------------------------------- 84 (543)
T TIGR02403 66 AINPLFGTMADFEELVSEA------------------------------------------------------------- 84 (543)
T ss_pred ccCcccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCC------CCCCCc---------------
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGT------PPNNWK--------------- 774 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~------~~~~W~--------------- 774 (1065)
|++||+||+|+|+||++.+|+||+++..+.++|++||+|.+.. |.+.. ....|.
T Consensus 85 ----h~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 159 (543)
T TIGR02403 85 ----KKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPK-GKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK 159 (543)
T ss_pred ----HHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCC-CCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence 9999999999999999999999999887788999999987643 22100 011121
Q ss_pred ---cccCCCHHHHHHHHHHHHh----------------c-------------------------------------CCce
Q psy15051 775 ---HINITSREVMRSQKDVVQS----------------F-------------------------------------PLIL 798 (1065)
Q Consensus 775 ---~ln~~n~~v~~~l~~~lk~----------------~-------------------------------------~~~~ 798 (1065)
.||+.||+|+++|.++++. + .+++
T Consensus 160 ~~pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (543)
T TIGR02403 160 TQADLNWENPEVREELKDVVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDS 239 (543)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCe
Confidence 1999999999999998221 0 2368
Q ss_pred EEEeecCCCChHHHhhhccCCCCccccccccHHHHHH--hhc------CCChHHHHHHHHHHhhcCC-CCCcccccccCC
Q psy15051 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK--FGA------TSNAKDLENVVNAYLKSLP-SGKWSSWMVGGH 869 (1065)
Q Consensus 799 ~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~--~~~------~~~~~~l~~~l~~~~~~~~-~~~~~~~flenH 869 (1065)
+++||+|..+++....|... ....++++|+|..... ..+ ..+...+...+..+....+ ...+..+|++||
T Consensus 240 ~lvgE~~~~~~~~~~~y~~~-~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~fl~NH 318 (543)
T TIGR02403 240 VTVGEMSSTTIENCIRYSNP-ENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNALFWNNH 318 (543)
T ss_pred EEEEEeCCCCHHHHHhhhCC-CCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceeeecCCC
Confidence 99999998767666666542 2246788888763221 111 1345677777777765554 456667799999
Q ss_pred ChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCcccccccc-------------cc
Q psy15051 870 SITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGK-------------DN 929 (1065)
Q Consensus 870 D~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~-------------~~ 929 (1065)
|++|++++++.. ++|++++++||+||+|+||||||+||.+.. ...++++||...+..+ +.
T Consensus 319 D~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~ 398 (543)
T TIGR02403 319 DQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAI 398 (543)
T ss_pred ChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999742 578888999999999999999999999853 2345667776665432 12
Q ss_pred ccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC-
Q psy15051 930 YLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN- 1008 (1065)
Q Consensus 930 ~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~- 1008 (1065)
+...+||++|.||+|+...++|||+..||++++.+|..+|++.|...+.+++++||+||+|||++|+|+.|+++.+..+
T Consensus 399 ~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~ 478 (543)
T TIGR02403 399 LKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDD 478 (543)
T ss_pred hhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCC
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1009 NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1009 ~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++|++|.|..++++++||+|++++.++++|+... ..+++++++
T Consensus 479 ~~v~a~~R~~~~~~~lVv~N~s~~~~~~~l~~~~---~~~~~~~~~ 521 (543)
T TIGR02403 479 PSVWAYTRTYKNQKLLVINNFYGEEKTIELPLDL---LSGKILLSN 521 (543)
T ss_pred CcEEEEEEEcCCcEEEEEEECCCCCeEeeCCccC---cCceEEEec
Confidence 4799999998899999999999999999997532 334455554
No 3
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=8.9e-58 Score=551.01 Aligned_cols=385 Identities=30% Similarity=0.560 Sum_probs=311.8
Q ss_pred hhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCC
Q psy15051 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNH 634 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy 634 (1065)
.||+++|||||+|++|++++++++|||+ ||+++|||||+||||+|||+||+++++.+|||++.||
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~---------------gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy 65 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFP---------------GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDY 65 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHH---------------HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccc
Confidence 4999999999999999999999999999 9999999999999999999999999887899999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
++|||+|||++|||+||++|
T Consensus 66 ~~vd~~~Gt~~df~~Lv~~a------------------------------------------------------------ 85 (539)
T TIGR02456 66 RAILPEFGTIDDFKDFVDEA------------------------------------------------------------ 85 (539)
T ss_pred cccChhhCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCC--C-----CCCCCCc------------
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKP--G-----TPPNNWK------------ 774 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p--~-----~~~~~W~------------ 774 (1065)
|++||+||+|+|+||++.+|+||+++... +++|.+||+|.......+ + ....+|.
T Consensus 86 -----h~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 160 (539)
T TIGR02456 86 -----HARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHR 160 (539)
T ss_pred -----HHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEec
Confidence 99999999999999999999999988755 678999999864321110 0 0112231
Q ss_pred ------cccCCCHHHHHHHHHHHH--------------------------------------------hcCCceEEEeec
Q psy15051 775 ------HINITSREVMRSQKDVVQ--------------------------------------------SFPLILMIITEA 804 (1065)
Q Consensus 775 ------~ln~~n~~v~~~l~~~lk--------------------------------------------~~~~~~~ligE~ 804 (1065)
.||+.||+||++|.++++ +..|+++++||.
T Consensus 161 f~~~~pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~ 240 (539)
T TIGR02456 161 FFSHQPDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEA 240 (539)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 299999999999988722 123488999998
Q ss_pred CCCChHHHhhhccCCCCccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCCh----------
Q psy15051 805 YSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSI---------- 871 (1065)
Q Consensus 805 ~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~---------- 871 (1065)
+.. +..+..|++.....++++.|++.+...+.. ..+...+...+.... ..+......+|++|||+
T Consensus 241 ~~~-~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~-~~~~~~~~~~fl~nHD~~~~~~~~~~~ 318 (539)
T TIGR02456 241 NQW-PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETP-DIPDSCQWCIFLRNHDELTLEMVTDEE 318 (539)
T ss_pred CCC-HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhh-hccCCCceeeecCCCCccCccccChhh
Confidence 654 555667775422236889999988764422 223455555554432 34444444569999998
Q ss_pred ---------------------hhHhhhcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccc
Q psy15051 872 ---------------------TRIATRYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKD 928 (1065)
Q Consensus 872 ---------------------~Rl~s~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~ 928 (1065)
.|+++.++. ++++++++++||+||+|+||||||+||.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~----------------- 381 (539)
T TIGR02456 319 RDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNI----------------- 381 (539)
T ss_pred hhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCC-----------------
Confidence 466666643 4689999999999999999999999998631
Q ss_pred cccccccCCCCCcCCCCcccccCCCCC---CCCCCCC----CCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC
Q psy15051 929 NYLKVCRDGSRVPFQWNDQENAGFSKA---KSWLPVH----PNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 929 ~~~~~~rd~~R~~m~W~~~~~~gFs~~---~~wl~~~----~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~ 1001 (1065)
....++.+|.||+|+...++|||++ .+|+|.. .++..+|++.|...+.+++++||+|++|||++|||+.|+
T Consensus 382 --~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~ 459 (539)
T TIGR02456 382 --WLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGS 459 (539)
T ss_pred --ccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCc
Confidence 0112455899999999889999988 4477653 357899999999999999999999999999999999999
Q ss_pred eEEEccC-CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1002 YKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1002 ~~~l~~~-~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
++.+..+ ++|++|.|..+++.++||+|+|+++++++|+.
T Consensus 460 ~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~ 499 (539)
T TIGR02456 460 LTFLPTGNRRVLAFLREYEGERVLCVFNFSRNPQAVELDL 499 (539)
T ss_pred eEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEeeccc
Confidence 9988764 57999999999999999999999999988864
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.2e-55 Score=536.37 Aligned_cols=362 Identities=22% Similarity=0.403 Sum_probs=284.5
Q ss_pred cCChhhcccceEEEEecccccCcCCCC---CCCC----CC--------------cccchhhhcccccccHHhhhHHHHHc
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDG---IGDL----RG--------------KNVRKRYLELTLGLGIIEKIDYLKEL 609 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~---~Gdl----~g--------------~~~~~~~~~~t~~~Gl~~kLdYLk~L 609 (1065)
..+|+|++++|||||+||||.+|++++ .|.. +| ......|+||++ +||++||||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl-~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDL-DGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCH-HHHHHHHHHHHHc
Confidence 467899999999999999999988532 1111 00 012346889998 9999999999999
Q ss_pred CcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccc
Q psy15051 610 GVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFA 689 (1065)
Q Consensus 610 GvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~ 689 (1065)
|||+|||+||++++++ |||++.||++|||+|||.+||++||++|
T Consensus 192 Gv~~I~L~Pif~s~s~-hgYd~~Dy~~iDp~~Gt~~df~~Lv~~a----------------------------------- 235 (598)
T PRK10785 192 GVTALYLNPIFTAPSV-HKYDTEDYRHVDPQLGGDAALLRLRHAT----------------------------------- 235 (598)
T ss_pred CCCEEEeCCcccCCCC-CCcCcccccccCcccCCHHHHHHHHHHH-----------------------------------
Confidence 9999999999999886 9999999999999999999999999999
Q ss_pred ccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--------CCCCCcceeecCC
Q psy15051 690 IHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--------IDPYTNYYVWKDG 761 (1065)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--------~~~~~d~y~~~~~ 761 (1065)
|++||+||||+|+||++.+|+||+....+ .++|.+||.+...
T Consensus 236 ------------------------------H~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~ 285 (598)
T PRK10785 236 ------------------------------QQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD 285 (598)
T ss_pred ------------------------------HHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCC
Confidence 99999999999999999999999876432 4689999988753
Q ss_pred CCCCCCCCCCCCcc------ccCCCHHHHHHHHH----H----H------------------------------------
Q psy15051 762 LNGKPGTPPNNWKH------INITSREVMRSQKD----V----V------------------------------------ 791 (1065)
Q Consensus 762 ~dG~p~~~~~~W~~------ln~~n~~v~~~l~~----~----l------------------------------------ 791 (1065)
|. ..+|.. ||+.||+|+++|.+ + +
T Consensus 286 --~~----~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~ 359 (598)
T PRK10785 286 --GR----ALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQA 359 (598)
T ss_pred --CC----cCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHH
Confidence 21 233432 99999999999985 2 1
Q ss_pred -HhcCCceEEEeecCCCChHHHhhhccCC-CCccccc-cccHHHHHHhhc--------CCChHHHHHHHHHHhhcCCCCC
Q psy15051 792 -QSFPLILMIITEAYSPSLEKVAKYYGTG-DTQGTHL-SVNYEIMNKFGA--------TSNAKDLENVVNAYLKSLPSGK 860 (1065)
Q Consensus 792 -k~~~~~~~ligE~~~~~~~~~~~y~~~~-~~~~~d~-~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~ 860 (1065)
++..|+++++||+|... ..++... ....+++ .|...++..+.. ..+...+...+......++...
T Consensus 360 vk~~~pd~~ligE~~~~~----~~~l~~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 435 (598)
T PRK10785 360 AKEENPEAYVLGEHFGDA----RQWLQADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQ 435 (598)
T ss_pred HHhhCCCeEEEEeccCCh----hhhccCccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHH
Confidence 11244789999999762 2333321 1122332 244445444421 2456777777777766666543
Q ss_pred c--ccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccC
Q psy15051 861 W--SSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRD 936 (1065)
Q Consensus 861 ~--~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd 936 (1065)
. ..+|++|||++|+++.++. .++++|++++||+||+||||||||+||.+. .||.
T Consensus 436 ~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~-------~dp~--------------- 493 (598)
T PRK10785 436 QLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGG-------NDPF--------------- 493 (598)
T ss_pred HHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCC-------CCCC---------------
Confidence 2 3358999999999998863 578899999999999999999999999885 2443
Q ss_pred CCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEE
Q psy15051 937 GSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR 1016 (1065)
Q Consensus 937 ~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R 1016 (1065)
+|.+|+|+... ...+++++||+|++|||++|+|+.|+++.+..++++++|.|
T Consensus 494 -~R~~m~W~~~~---------------------------~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R 545 (598)
T PRK10785 494 -CRKPFPWDEAK---------------------------QDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFAR 545 (598)
T ss_pred -ccCCcCCCccc---------------------------CchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEE
Confidence 78999998632 13579999999999999999999999999988889999999
Q ss_pred EcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1017 TEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1017 ~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
..+++.++||+|++ +.+++.|+.
T Consensus 546 ~~~~~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 546 VLQQQRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred ECCCCEEEEEEECC-CCeEEeccc
Confidence 99999999999999 677888874
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=2.1e-48 Score=471.68 Aligned_cols=364 Identities=19% Similarity=0.287 Sum_probs=244.3
Q ss_pred ccCChhhcccceEEEEecccccCcCCCCC---CCC-CCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC--
Q psy15051 550 RCNQKEWWKNTVIYQILVPSFKDSNNDGI---GDL-RGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-- 623 (1065)
Q Consensus 550 ~~~~~~ww~~~vIYei~v~~F~d~~~d~~---Gdl-~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-- 623 (1065)
..+++.||+++|||||+||||.+|+..+- |.- .|....+.|+||++ +||+++|||||+||||+|||+||+++.
T Consensus 180 ~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl-~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~ 258 (683)
T PRK09505 180 EAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDL-RGLTEKLDYLQQLGVNALWISSPLEQIHG 258 (683)
T ss_pred CCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCH-HHHHHhhHHHHHcCCCEEEeCcccccccc
Confidence 34568899999999999999999884321 110 11223467999988 899999999999999999999999873
Q ss_pred ------------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccc
Q psy15051 624 ------------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIH 691 (1065)
Q Consensus 624 ------------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~ 691 (1065)
..+|||++.||+.|||+|||++|||+||++|
T Consensus 259 ~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~a------------------------------------- 301 (683)
T PRK09505 259 WVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEA------------------------------------- 301 (683)
T ss_pred ccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHH-------------------------------------
Confidence 2569999999999999999999999999999
Q ss_pred ccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC------chhhHhhh----c-c---CCCCCccee
Q psy15051 692 SVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK------HDWFIKSA----Q-K---IDPYTNYYV 757 (1065)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~------~~wf~~~~----~-~---~~~~~d~y~ 757 (1065)
|++||+||+|+|+||++.. +.+|.... . . .+.|.+|+-
T Consensus 302 ----------------------------H~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~ 353 (683)
T PRK09505 302 ----------------------------HQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQP 353 (683)
T ss_pred ----------------------------HHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccc
Confidence 5555555555555555531 12222210 0 0 111111110
Q ss_pred --------------ecCC---------------CC---------------CCCCCCCCC--------Ccc----c---cC
Q psy15051 758 --------------WKDG---------------LN---------------GKPGTPPNN--------WKH----I---NI 778 (1065)
Q Consensus 758 --------------~~~~---------------~d---------------G~p~~~~~~--------W~~----l---n~ 778 (1065)
+.+. .. +.|.+...+ |.. + +.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~ 433 (683)
T PRK09505 354 AAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAI 433 (683)
T ss_pred cccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccc
Confidence 0000 00 000000000 000 1 23
Q ss_pred CCHHHHHHHHHHHHh---------------------------------------cCC-------ceEEEeecCCCChHHH
Q psy15051 779 TSREVMRSQKDVVQS---------------------------------------FPL-------ILMIITEAYSPSLEKV 812 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~---------------------------------------~~~-------~~~ligE~~~~~~~~~ 812 (1065)
.|++|+++|.++++. .++ +++++||+|+.++. .
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~-~ 512 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVM-K 512 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchh-h
Confidence 467999999987321 111 37999999986443 3
Q ss_pred hhhccCCCCccccccccHHHHHHhhcCC-ChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH-HHHHHHHHHH
Q psy15051 813 AKYYGTGDTQGTHLSVNYEIMNKFGATS-NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP-DLVDAMNMLT 890 (1065)
Q Consensus 813 ~~y~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~-~~~kla~~ll 890 (1065)
..|++ .++|.+++|.+........ ....+...........+.. ....|++|||++|+.+..+. .+++++++++
T Consensus 513 ~~y~~----~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~FLdNHDt~Rf~s~~~~~~~~klAaall 587 (683)
T PRK09505 513 SDYYR----HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDF-NVLSYLSSHDTRLFFEGGQSYAKQRRAAELL 587 (683)
T ss_pred HHHHh----hcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-ceeecccCCChhhhhhhcCchHHHHHHHHHH
Confidence 45554 4588888888775432111 1122222232222222221 12349999999999998764 4788999999
Q ss_pred HhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccH
Q psy15051 891 LLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970 (1065)
Q Consensus 891 ~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~ 970 (1065)
||+||+|+||||||+||.+.. ...||. ..+|.+|+|+...
T Consensus 588 ~tlpGiP~IYYGdEiGm~gg~----~g~DP~--------------~~~R~~M~W~~~~---------------------- 627 (683)
T PRK09505 588 LLAPGAVQIYYGDESARPFGP----TGSDPL--------------QGTRSDMNWQEVS---------------------- 627 (683)
T ss_pred HhCCCCcEEEechhhCccCCC----CCCCCc--------------ccccccCCccccc----------------------
Confidence 999999999999999998752 112332 1378999998521
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECC
Q psy15051 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLN 1030 (1065)
Q Consensus 971 ~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s 1030 (1065)
....+++++||+|++||+++|||+.|+++.+. ++++++|.|..+++++|||+|-.
T Consensus 628 ----~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~~ 682 (683)
T PRK09505 628 ----GKSAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAGQ 682 (683)
T ss_pred ----cchHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeCC
Confidence 12346999999999999999999999998874 56799999999999999999854
No 6
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.1e-46 Score=436.52 Aligned_cols=243 Identities=11% Similarity=0.063 Sum_probs=174.4
Q ss_pred EEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCC
Q psy15051 35 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISR 114 (1065)
Q Consensus 35 qi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~ 114 (1065)
+|.+.+|.|++++|.|||+|+++| ||+ + ||+ ++|+. |+|.++ .++|| +|.+
T Consensus 2 ~v~lity~Ds~g~glgdl~g~l~~--yL~-~-~v~---------------~i~Ll-Pffps~-sD~GY--------dv~D 52 (470)
T TIGR03852 2 KAMLITYADSLGKNLKELNKVLEN--YFK-D-AVG---------------GVHLL-PFFPST-GDRGF--------APMD 52 (470)
T ss_pred CceEEEecCCCCCChhhHHHHHHH--HHH-H-hCC---------------EEEEC-CCCcCC-CCCCc--------Cchh
Confidence 366788999999999999999999 999 7 799 66666 888888 49999 6666
Q ss_pred CccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCc
Q psy15051 115 LPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV 194 (1065)
Q Consensus 115 ~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~ 194 (1065)
| ++|||+||||+||++|++ .|+|| +|+ |+|||| .+|+|||+...
T Consensus 53 Y-------~~VDP~~Gt~~Df~~L~~----~~kvm--------lDl-------V~NHtS----------~~h~WFq~~~~ 96 (470)
T TIGR03852 53 Y-------TEVDPAFGDWSDVEALSE----KYYLM--------FDF-------MINHIS----------RQSEYYQDFLE 96 (470)
T ss_pred h-------ceeCcccCCHHHHHHHHH----hhhHH--------hhh-------cccccc----------cchHHHHHHHh
Confidence 6 666679999999999999 49999 665 777765 66666665321
Q ss_pred ceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc--ccccccccCCc--ch---h-----hhccc
Q psy15051 195 NLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY--WGDILERTVSS--NS---L-----QALQR 262 (1065)
Q Consensus 195 ~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~---~-----~~~~~ 262 (1065)
+ .++.+|.++| |.+.|....+. ++ + .++..
T Consensus 97 ~--------------------------------------~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~ 138 (470)
T TIGR03852 97 K--------------------------------------KDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQE 138 (470)
T ss_pred c--------------------------------------CCCCCccceEEecccccCCCCccccccccccCCCCCCCCCc
Confidence 1 0023334444 22212111000 00 0 00011
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH
Q psy15051 263 VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL 342 (1065)
Q Consensus 263 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1065)
+-..+...+++||+|. ++||||||+||.|+ ++|.
T Consensus 139 ~~~~~~~~~~~w~tF~-------------------~~QpDLN~~np~v~---------------------------e~i~ 172 (470)
T TIGR03852 139 VTFADGSTEKVWNTFG-------------------EEQIDLDVTSETTK---------------------------RFIR 172 (470)
T ss_pred eEEcCCCCeEEEccCC-------------------ccccccCCCCHHHH---------------------------HHHH
Confidence 1111223356699998 89999999999996 8899
Q ss_pred HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCc-hhHHHHHHHHHHHHHhhCCccCC
Q psy15051 343 CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQ-PETYEMLYKWRTLVEKFGNQSAD 421 (1065)
Q Consensus 343 ~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~r~~~d~~~~~~~~ 421 (1065)
++++||+++||||||+|||+||||..+ + .|.+. ||+|++|+++|+++.. ++..++
T Consensus 173 ~il~fwl~~GvdgfRLDAv~~l~K~~G------------t-----------~c~~l~pet~~~l~~~r~~~~~-~~~~ll 228 (470)
T TIGR03852 173 DNLENLAEHGASIIRLDAFAYAVKKLG------------T-----------NDFFVEPEIWELLDEVRDILAP-TGAEIL 228 (470)
T ss_pred HHHHHHHHcCCCEEEEecchhhcccCC------------C-----------CcccCChhHHHHHHHHHHHhcc-CCCEEE
Confidence 999999999999999999999999643 1 18776 9999999999998844 599999
Q ss_pred CCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH
Q psy15051 422 RQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV 470 (1065)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~ 470 (1065)
||+. ++++++ ++.++|+||+|+|.|++++
T Consensus 229 ~E~~----~~~~~~----------------~~~gde~~mvY~F~lppl~ 257 (470)
T TIGR03852 229 PEIH----EHYTIQ----------------FKIAEHGYYVYDFALPMLV 257 (470)
T ss_pred eHhh----hhcccc----------------cccccceeEEccCccchhh
Confidence 9992 233322 2323689999999999983
No 7
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.7e-47 Score=457.23 Aligned_cols=310 Identities=23% Similarity=0.318 Sum_probs=227.2
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.|+||+++||||||||||+|++++|.|||+||++|||||+ +|||| ++|++ |++.++..+|||
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~-~lGv~---------------~i~l~-P~~~~~~~~~gY- 65 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQ-KLGVD---------------AIWLT-PFYVSPQVDNGY- 65 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHH-hCCCC---------------EEEEC-CCCCCCCCCCCC-
Confidence 4689999999999999999999999999999999999999 99999 55555 777777778999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| +.|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 66 -------~~~d~-------~~id~~~Gt~~d~~~lv~~~h~~gi~vi--------lD~-------V~NH~s--------- 107 (551)
T PRK10933 66 -------DVANY-------TAIDPTYGTLDDFDELVAQAKSRGIRII--------LDM-------VFNHTS--------- 107 (551)
T ss_pred -------CcccC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCcc---------
Confidence 66666 677779999999999997 799999999 777 788865
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ 261 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (1065)
.+|+||+.... .+.||.++| |.+......+++|...++
T Consensus 108 -~~~~wf~~~~~----------------------------------------~~~~y~d~y~~~~~~~~~~~~~~~~~~~ 146 (551)
T PRK10933 108 -TQHAWFREALN----------------------------------------KESPYRQFYIWRDGEPETPPNNWRSKFG 146 (551)
T ss_pred -CchhHHHhhcC----------------------------------------CCCCCcCceEecCCCCCCCCCcccccCC
Confidence 66677765321 112222222 221111111111111110
Q ss_pred --ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 262 --RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 262 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
.+...+....+++|.|. +.|||||++||+|+ +
T Consensus 147 ~~~w~~~~~~~~~y~~~f~-------------------~~~pdLn~~np~V~---------------------------~ 180 (551)
T PRK10933 147 GSAWRWHAESEQYYLHLFA-------------------PEQADLNWENPAVR---------------------------A 180 (551)
T ss_pred CccccccCCCCceEeeccc-------------------ccCCccCCCCHHHH---------------------------H
Confidence 01111223344589998 79999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||++.||||||+|||++|.+..+|++++... .+.++.++|++|++++++|+.+...++..
T Consensus 181 ~l~~~~~~W~~~GvDGfRlDa~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (551)
T PRK10933 181 ELKKVCEFWADRGVDGLRLDVVNLISKDQDFPDDLDGD-------------GRRFYTDGPRAHEFLQEMNRDVFTPRGLM 247 (551)
T ss_pred HHHHHHHHHHHCCCcEEEEcchhhcCcCCCCCCCcccc-------------cccccCCChHHHHHHHHHHHHhhcccCcE
Confidence 99999999999999999999999999988887755321 12356789999999999987554444677
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHHHhcCc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFIYCGIV 480 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~Wq~~m~ 480 (1065)
+|||.+....+... ++. +..+++++|+|||.++.+ . ++..||..|.
T Consensus 248 ~vgE~~~~~~~~~~--------------~y~-~~~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (551)
T PRK10933 248 TVGEMSSTSLEHCQ--------------RYA-ALTGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH 312 (551)
T ss_pred EEEeecCCCHHHHH--------------Hhh-cccCCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhc
Confidence 89998543322111 111 122356788888876421 1 5789999998
Q ss_pred CCcccchhhcccCccccchhhhhh
Q psy15051 481 DDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 481 ~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...+..+++.|||++|++||++++
T Consensus 313 ~~~~~~~fl~NHD~~R~~sr~g~~ 336 (551)
T PRK10933 313 NVAWNALFWCNHDQPRIVSRFGDE 336 (551)
T ss_pred ccCeeccccCCCCcccHHHHcCCc
Confidence 888888899999999999999965
No 8
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=3.7e-45 Score=439.11 Aligned_cols=350 Identities=22% Similarity=0.328 Sum_probs=237.2
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
++++||||+|+++|+. .|+|+ ||+++|||||+||||+||||||++++. .+|||++.||+
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~---------------gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~ 150 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFD---------------AAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPY 150 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHH---------------HHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcc
Confidence 7899999999999976 58999 999999999999999999999999874 46999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++|
T Consensus 151 ~~~~~~G~~~e~k~lV~~a------------------------------------------------------------- 169 (542)
T TIGR02402 151 APHNAYGGPDDLKALVDAA------------------------------------------------------------- 169 (542)
T ss_pred ccccccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccCCCH---HHHHHHHHH-
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INITSR---EVMRSQKDV- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~~n~---~v~~~l~~~- 790 (1065)
|++||+||||+|+||++.++.++.. +..||... ..+.|+. +|+.++ +|+++|.++
T Consensus 170 ----H~~Gi~VilD~V~NH~~~~~~~~~~-------~~~y~~~~---------~~~~wg~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 170 ----HGLGLGVILDVVYNHFGPEGNYLPR-------YAPYFTDR---------YSTPWGAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred ----HHCCCEEEEEEccCCCCCccccccc-------cCccccCC---------CCCCCCCccccCCCcHHHHHHHHHHHH
Confidence 5566666666666666655443322 11222100 1123333 666666 666666654
Q ss_pred -----------------------------------HHhcCCc---eEEEeecCCCChHHHhhhccCCCCccccccccHHH
Q psy15051 791 -----------------------------------VQSFPLI---LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI 832 (1065)
Q Consensus 791 -----------------------------------lk~~~~~---~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~ 832 (1065)
+++..|+ +++|||.+...+......... ..+++..++..+
T Consensus 230 ~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~--~~~~d~~~~~~~ 307 (542)
T TIGR02402 230 LYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDG--GYGLDAQWNDDF 307 (542)
T ss_pred HHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCC--ccceEEEECchH
Confidence 4445567 999999986544322211111 244677777766
Q ss_pred HHHhhcCC-------------ChHHHHHHHHHHhhc-------------CC----CCCcccccccCCCh-------hhHh
Q psy15051 833 MNKFGATS-------------NAKDLENVVNAYLKS-------------LP----SGKWSSWMVGGHSI-------TRIA 875 (1065)
Q Consensus 833 ~~~~~~~~-------------~~~~l~~~l~~~~~~-------------~~----~~~~~~~flenHD~-------~Rl~ 875 (1065)
+..+.... +...+.+.+..-... .+ .....++|++|||+ .|++
T Consensus 308 ~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~ 387 (542)
T TIGR02402 308 HHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLS 387 (542)
T ss_pred HHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhh
Confidence 66552211 233444444321000 00 11234569999997 7999
Q ss_pred hhcCHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccc----ccccccc------CC------CC
Q psy15051 876 TRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKD----NYLKVCR------DG------SR 939 (1065)
Q Consensus 876 s~~~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~----~~~~~~r------d~------~R 939 (1065)
..++.++++++++++||+||+||||||||+|+.+++..++++.|++......+ ++...++ |+ +|
T Consensus 388 ~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~ 467 (542)
T TIGR02402 388 QLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLR 467 (542)
T ss_pred hcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhh
Confidence 98888899999999999999999999999999998766666655432110000 0000000 00 23
Q ss_pred CcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc----cCCcEEEEE
Q psy15051 940 VPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST----PNNYVFILT 1015 (1065)
Q Consensus 940 ~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~----~~~~viaf~ 1015 (1065)
.+++|+... .....+++++||+||+|||++++|+.+....+. .++.++++.
T Consensus 468 ~~~~W~~~~-------------------------~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~ 522 (542)
T TIGR02402 468 SKLDWAEAE-------------------------SGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVR 522 (542)
T ss_pred ccCCccccc-------------------------ccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEE
Confidence 445554321 112457999999999999999999887754433 345688877
Q ss_pred EEcCCcEEEEEEECCCCcEEE
Q psy15051 1016 RTEGSTSVYLIINLNSRTETV 1036 (1065)
Q Consensus 1016 R~~~~~~vlVv~N~s~~~~~v 1036 (1065)
.++++++|++|++++++++
T Consensus 523 --~~~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 523 --FGRGELVLAANLSTSPVAV 541 (542)
T ss_pred --ECCCeEEEEEeCCCCCcCC
Confidence 4667899999999987654
No 9
>KOG0471|consensus
Probab=100.00 E-value=7.3e-45 Score=435.30 Aligned_cols=396 Identities=34% Similarity=0.681 Sum_probs=319.7
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.++||+++++|||+|++|+++++++.|+++ ||++||||||+||||+|||+||++++..++||++.
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~---------------GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~ 75 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLK---------------GITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDAS 75 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccc---------------cchhhhhHHHhcCCceEEeCCCcCCCHHHhccCcc
Confidence 689999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||+.|+|+|||+|||++||+++
T Consensus 76 d~~~l~p~fGt~edf~~Li~~~---------------------------------------------------------- 97 (545)
T KOG0471|consen 76 DLEQLRPRFGTEEDFKELILAM---------------------------------------------------------- 97 (545)
T ss_pred chhhhcccccHHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---CCCCCCCCCCCcc--------------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---NGKPGTPPNNWKH-------------- 775 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---dG~p~~~~~~W~~-------------- 775 (1065)
|++||++|+|+|+||++..|+||......+..|.+||.|..+. .|. +.+|.+|.+
T Consensus 98 -------h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~-~~~p~nw~~~~~~s~~~~~e~~~ 169 (545)
T KOG0471|consen 98 -------HKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGK-RIPPLNWLSVFGGSAWPFDEGRQ 169 (545)
T ss_pred -------hhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccC-CCCccchHhhhccccCccccccc
Confidence 9999999999999999999999999887766699999998765 455 666666654
Q ss_pred -------------ccCCCHHHHHHHHHHHHhc-----------------CC----------ceEEEeecCCCChHHHhhh
Q psy15051 776 -------------INITSREVMRSQKDVVQSF-----------------PL----------ILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 776 -------------ln~~n~~v~~~l~~~lk~~-----------------~~----------~~~ligE~~~~~~~~~~~y 815 (1065)
+|++||+|++.|.++++.+ .. ..+-.||.+...+.....+
T Consensus 170 ~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~gvdGfRiD~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 249 (545)
T KOG0471|consen 170 KYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKGVDGFRIDAVKGYAGENFKNMWPDEPVFDVGEKLQDDNYVAYQY 249 (545)
T ss_pred ceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEcccccccccccccccCCCcccceeEecCcchhhccc
Confidence 9999999999999997620 00 2444555443322111111
Q ss_pred ccC--------------------------------------------------CC-CccccccccHHHHHHhhcCCChHH
Q psy15051 816 YGT--------------------------------------------------GD-TQGTHLSVNYEIMNKFGATSNAKD 844 (1065)
Q Consensus 816 ~~~--------------------------------------------------~~-~~~~d~~~~~~~~~~~~~~~~~~~ 844 (1065)
... .. ..+-+.++.+.....+... .+..
T Consensus 250 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~-~~~~ 328 (545)
T KOG0471|consen 250 NDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLT-VASI 328 (545)
T ss_pred ccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhcc-chHH
Confidence 000 00 0000111111111111111 2355
Q ss_pred HHHHHHHHhhcCC-CCCcccccccCCChhhHhhhcCHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccc
Q psy15051 845 LENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGY 923 (1065)
Q Consensus 845 l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~ 923 (1065)
+...+..++...+ ...+..|.++|||+.|++++++....+++.++++++||+|++|+|+|+|+....+..++..+|..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~ 408 (545)
T KOG0471|consen 329 YKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLM 408 (545)
T ss_pred HHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHh
Confidence 6777777777776 477888999999999999999999999999999999999999999999999864445555555422
Q ss_pred ccccccccccccCCCCCcCCCCcccccCCCCC-CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe
Q psy15051 924 IFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002 (1065)
Q Consensus 924 ~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~-~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~ 1002 (1065)
+ .|.+|+|+...++||+.+ ++|++++.++..+|+..+...+++++..++++..+|+....+..|..
T Consensus 409 ~-------------~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~ 475 (545)
T KOG0471|consen 409 Q-------------SRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSF 475 (545)
T ss_pred c-------------cCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccce
Confidence 2 289999999889999966 99999999998899999999999999999999999999977888888
Q ss_pred EEEccCCcEEEEEEE-cCCcEEEEEEECCCCcEEEEcCCCcc
Q psy15051 1003 KISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDLSDCIE 1043 (1065)
Q Consensus 1003 ~~l~~~~~viaf~R~-~~~~~vlVv~N~s~~~~~v~l~~~~~ 1043 (1065)
.....++.+++|.|. .+.+.+++++|+++.++...+....+
T Consensus 476 ~~~~~~~~if~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (545)
T KOG0471|consen 476 VLFAATPGLFSFSRNWDGNERFIAVLNFGDSPLSLNLTDLDS 517 (545)
T ss_pred eeecCCCceEEEEeccCCCceEEEEEecCCcccccccccccc
Confidence 887888899999999 56688999999999988888776544
No 10
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=9e-45 Score=442.85 Aligned_cols=379 Identities=18% Similarity=0.237 Sum_probs=255.6
Q ss_pred cccceEEEEecccccCcCCCC---CCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDG---IGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~---~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
++++||||+|+++|+..++++ .|+|.|-...+.. .-+|++++|||||+||||+||||||+++++
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~----~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~ 200 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTK----GPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNA 200 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCcc----ccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCC
Confidence 567899999999999765544 3555521111110 003778889999999999999999999864
Q ss_pred CCCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccC
Q psy15051 625 GDIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLN 696 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 696 (1065)
..|||++.||++|+++||+ ++|||+||++|
T Consensus 201 ~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~------------------------------------------ 238 (605)
T TIGR02104 201 YNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL------------------------------------------ 238 (605)
T ss_pred CCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH------------------------------------------
Confidence 2499999999999999987 59999999999
Q ss_pred ccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCC-CchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 697 PVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSN-KHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~-~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+||++. .+..|+.. .+.||+.... +|. .....+|..
T Consensus 239 -----------------------H~~Gi~VilDvV~NH~~~~~~~~f~~~------~~~~~~~~~~-~g~-~~~~~g~~~ 287 (605)
T TIGR02104 239 -----------------------HENGIRVIMDVVYNHTYSREESPFEKT------VPGYYYRYNE-DGT-LSNGTGVGN 287 (605)
T ss_pred -----------------------HHCCCEEEEEEEcCCccCCCCCcccCC------CCCeeEEECC-CCC-ccCCCcccC
Confidence 888888888888888863 33444331 1234443222 232 111222222
Q ss_pred -ccCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHHHhhhccC-CCC
Q psy15051 776 -INITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEKVAKYYGT-GDT 821 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~~~~y~~~-~~~ 821 (1065)
+++.+|+|+++|.+++ +...|+++++||.|............. +..
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~ 367 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANA 367 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhcc
Confidence 8888999999888872 234568999999998643211100000 000
Q ss_pred c--cccccccHHHHHHhhcC--------------CChHHHHHHHHHHh------hcCCCCCcccccccCCChhhHhhhcC
Q psy15051 822 Q--GTHLSVNYEIMNKFGAT--------------SNAKDLENVVNAYL------KSLPSGKWSSWMVGGHSITRIATRYS 879 (1065)
Q Consensus 822 ~--~~d~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~~------~~~~~~~~~~~flenHD~~Rl~s~~~ 879 (1065)
. .-...|++.+++++.+. .....+...+.... .........++|++|||+.|+.+++.
T Consensus 368 ~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~ 447 (605)
T TIGR02104 368 YQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS 447 (605)
T ss_pred CCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH
Confidence 0 01234666666655421 11222322222110 11122234556999999999876642
Q ss_pred -----------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCccc
Q psy15051 880 -----------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQE 948 (1065)
Q Consensus 880 -----------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~ 948 (1065)
.++.|++++++||+||+||||||||+|+.+.. ++. .++++.++.+|+|+...
T Consensus 448 ~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g-------~~n----------~y~~~d~~~~ldW~~~~ 510 (605)
T TIGR02104 448 LANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQG-------DEN----------SYNSPDSINQLDWDRKA 510 (605)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCC-------CCC----------CccCCCcccccCccccc
Confidence 24788999999999999999999999998642 111 12233367889997532
Q ss_pred ccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEE-------Ec-cCCcEEEEEEEcCC
Q psy15051 949 NAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI-------ST-PNNYVFILTRTEGS 1020 (1065)
Q Consensus 949 ~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~-------l~-~~~~viaf~R~~~~ 1020 (1065)
....+++++|+|++|||++|+|+.|++.. +. .++.+++|.|....
T Consensus 511 ---------------------------~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~ 563 (605)
T TIGR02104 511 ---------------------------TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHA 563 (605)
T ss_pred ---------------------------cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCc
Confidence 12469999999999999999999887532 22 24579999998533
Q ss_pred -----cEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1021 -----TSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1021 -----~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+.++|++|+++++++++++. ++.+++++++..+++.
T Consensus 564 ~~~~~~~llVv~N~s~~~~~v~lp~----~~~w~~~~~~~~~~~~ 604 (605)
T TIGR02104 564 NGDPWKDIIVIHNANPEPVDIQLPS----DGTWNVVVDNKNAGSK 604 (605)
T ss_pred CCCCcCeEEEEEeCCCCCeEEECCC----CCCEEEEECCCcCCCC
Confidence 47999999999999999874 4789999998887764
No 11
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2.8e-45 Score=441.70 Aligned_cols=306 Identities=23% Similarity=0.328 Sum_probs=225.0
Q ss_pred hhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
||+++|||||+||||++++++|.|||+||++||+||+ +|||+ ++|++ |++.++..++||
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~-~lG~~---------------~i~l~-Pi~~~~~~~~gY---- 59 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLK-KLGVD---------------YIWLN-PFYVSPQKDNGY---- 59 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHH-HcCCC---------------EEEEC-CcccCCCCCCCC----
Confidence 9999999999999999999999999999999999999 99999 56666 778777778899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ .+
T Consensus 60 ----~~~d~-------~~id~~~Gt~~~~~~lv~~ah~~gi~vi--------lD~-------v~NH~~----------~~ 103 (543)
T TIGR02403 60 ----DVSDY-------YAINPLFGTMADFEELVSEAKKRNIKIM--------LDM-------VFNHTS----------TE 103 (543)
T ss_pred ----Ccccc-------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc----------cc
Confidence 66666 677779999999999997 799999999 777 888865 66
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc--c
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ--R 262 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 262 (1065)
|+||++...+ ..+|.++| |.+.. ...+.+|...++ .
T Consensus 104 ~~~f~~~~~~----------------------------------------~~~y~~~y~~~~~~-~~~~~~~~~~~~~~~ 142 (543)
T TIGR02403 104 HEWFKKALAG----------------------------------------DSPYRDFYIWRDPK-GKPPTNWQSKFGGSA 142 (543)
T ss_pred hHHHHHhhcC----------------------------------------CCcccCceEecCCC-CCCCCcccccCCCcC
Confidence 7777654211 12222222 22111 011111111000 0
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH
Q psy15051 263 VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL 342 (1065)
Q Consensus 263 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1065)
+-..+...+++++.|. ..|||||++||+|+ ++|+
T Consensus 143 w~~~~~~~~~y~~~f~-------------------~~~pdln~~np~v~---------------------------~~i~ 176 (543)
T TIGR02403 143 WEYFGDTGQYYLHLFD-------------------KTQADLNWENPEVR---------------------------EELK 176 (543)
T ss_pred ccccCCCCceEEeccC-------------------CcCCccCCCCHHHH---------------------------HHHH
Confidence 1111223445599999 79999999999997 8999
Q ss_pred HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCC
Q psy15051 343 CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADR 422 (1065)
Q Consensus 343 ~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~ 422 (1065)
++++||+++||||||||||++|.+...++|+|... ...++.++|++|+|++++|+.+...++..+||
T Consensus 177 ~~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvg 243 (543)
T TIGR02403 177 DVVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGD-------------GRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVG 243 (543)
T ss_pred HHHHHHHHcCCCEEEEeeehhhccCcccCCCCCCC-------------CccccCCChHHHHHHHHHHHHhhccCCeEEEE
Confidence 99999999999999999999999988788776421 12346688999999999998876678899999
Q ss_pred CCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHHHhcCc-CC
Q psy15051 423 QPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFIYCGIV-DD 482 (1065)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~Wq~~m~-~~ 482 (1065)
|........... | . +..+.+++++|||.++.. . ++..|+..++ ..
T Consensus 244 E~~~~~~~~~~~------y--------~-~~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (543)
T TIGR02403 244 EMSSTTIENCIR------Y--------S-NPENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGG 308 (543)
T ss_pred EeCCCCHHHHHh------h--------h-CCCCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccC
Confidence 986543321110 1 1 222356788888875421 1 5677988887 44
Q ss_pred cccchhhcccCccccchhhhhh
Q psy15051 483 TSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 483 ~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..++++|||++|.++|++++
T Consensus 309 ~~~~~fl~NHD~~R~~s~~g~~ 330 (543)
T TIGR02403 309 GWNALFWNNHDQPRAVSRFGDD 330 (543)
T ss_pred cceeeecCCCChhhHHHhcCCc
Confidence 4555567999999999999965
No 12
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.9e-43 Score=410.43 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=171.1
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhh-hhHhhhCCCCcCCCCCCCCCcceeeecccCccc-cccccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR-YLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL-TTAVKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~-yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~-~~~~~~~gy~~~v 106 (1065)
++.|+.-.|++|+. .|||+||+++|| ||+ +| |+ ++|+. |.| .++..++||
T Consensus 2 ~n~~~litY~Ds~~------~GdL~gl~~kLd~yL~-~l-v~---------------~vhll-Pff~psp~sD~GY---- 53 (495)
T PRK13840 2 KNKVQLITYADRLG------DGGLKSLTALLDGRLD-GL-FG---------------GVHIL-PFFYPIDGADAGF---- 53 (495)
T ss_pred CCceEEEEeccCCC------CCCHhHHHHHHHHHHH-HH-hC---------------eEEEC-CCccCCCCCCCCC----
Confidence 45677777777774 279999999999 599 99 99 45555 777 456789999
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
+|.+| ++|||+||||+||++|++ ||+|| +|+ |+||+| .+|
T Consensus 54 ----dv~DY-------~~VDP~fGt~eDf~~L~~----giklm--------lDl-------V~NHtS----------~~h 93 (495)
T PRK13840 54 ----DPIDH-------TKVDPRLGDWDDVKALGK----THDIM--------ADL-------IVNHMS----------AES 93 (495)
T ss_pred ----CCcCh-------hhcCcccCCHHHHHHHHh----CCeEE--------EEE-------CCCcCC----------CCc
Confidence 66666 677779999999999998 99999 776 777765 666
Q ss_pred ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-cccc-cc-ccCCcchhhhc---
Q psy15051 187 FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDI-LE-RTVSSNSLQAL--- 260 (1065)
Q Consensus 187 ~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~--- 260 (1065)
+|||+... ..++.+|.++| |.+. +. +..+.++.+.+
T Consensus 94 ~WFqd~l~--------------------------------------~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~ 135 (495)
T PRK13840 94 PQFQDVLA--------------------------------------KGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPR 135 (495)
T ss_pred HHHHHHHH--------------------------------------hCCCCCccCeEEECCCCCcCCCCCcccccccCCC
Confidence 67666311 01123334444 2221 10 01111111111
Q ss_pred -----cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhh
Q psy15051 261 -----QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFC 335 (1065)
Q Consensus 261 -----~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
..+...+...+++||+|. ++||||||+||+|+
T Consensus 136 ~g~~~~~~~~~~~~~~~~w~tF~-------------------~~QpDLN~~NP~V~------------------------ 172 (495)
T PRK13840 136 PGLPFTTYTLADGKTRLVWTTFT-------------------PQQIDIDVHSAAGW------------------------ 172 (495)
T ss_pred CCCcccceEecCCCceEEeccCC-------------------cccceeCCCCHHHH------------------------
Confidence 001011223345688888 79999999999997
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 336 YEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 336 ~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
++|+++++||+++||||||+|||+|+||+.+ + .|.++||+|+|+++||++++.+
T Consensus 173 ---~~i~~il~fwl~~GVDgfRLDAv~~l~K~~g------------t-----------~c~~~pe~~~~l~~lr~~~~~~ 226 (495)
T PRK13840 173 ---EYLMSILDRFAASHVTLIRLDAAGYAIKKAG------------T-----------SCFMIPETFEFIDRLAKEARAR 226 (495)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEechhhhhcCCC------------C-----------CcCCChHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999642 1 2889999999999999999877
Q ss_pred CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH
Q psy15051 416 GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ 469 (1065)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~ 469 (1065)
+..+|+|. .+ |||... .-.+|+||+|||.|+++
T Consensus 227 -~~~ll~Ei-------~~-------y~~~~~------~~~~e~~~vYnF~Lp~l 259 (495)
T PRK13840 227 -GMEVLVEI-------HS-------YYKTQI------EIAKKVDRVYDFALPPL 259 (495)
T ss_pred -CCEEEEeC-------cc-------ccCccc------cccccccEEecchhhHH
Confidence 55566653 23 333200 01248999999999887
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.8e-43 Score=431.03 Aligned_cols=362 Identities=16% Similarity=0.212 Sum_probs=237.7
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
..+..+|||||+++|++++.++.|+|+ ||+++| ||||+||||+||||||++++. .+|||++.|
T Consensus 144 ~~~~~~iYe~hv~~f~~~~~~~~g~~~---------------~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~ 208 (633)
T PRK12313 144 LDRPISIYEVHLGSWKRNEDGRPLSYR---------------ELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTG 208 (633)
T ss_pred CCCCceEEEEehhccccCCCCCccCHH---------------HHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcC
Confidence 346789999999999987777789999 999995 999999999999999999975 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+|+|||++|||+||++||++||+||||+|+
T Consensus 209 y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~---------------------------------------------- 242 (633)
T PRK12313 209 YFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVP---------------------------------------------- 242 (633)
T ss_pred cCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC----------------------------------------------
Confidence 9999999999999999999995555555555554
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhh----------------------------------HhhhccCCCCCcceeec
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWF----------------------------------IKSAQKIDPYTNYYVWK 759 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf----------------------------------~~~~~~~~~~~d~y~~~ 759 (1065)
||++.++..+ ++.+.. .-.||+..
T Consensus 243 -------------------nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~---~~~~W~~~ 300 (633)
T PRK12313 243 -------------------GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLIS---SALFWLDE 300 (633)
T ss_pred -------------------CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHH---HHHHHHHH
Confidence 4444332211 110000 00122211
Q ss_pred CCCCCCCCCCCC------------CCcc------ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCC
Q psy15051 760 DGLNGKPGTPPN------------NWKH------INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT 821 (1065)
Q Consensus 760 ~~~dG~p~~~~~------------~W~~------ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~ 821 (1065)
.+.||+ |++.. .|.. -|....++.+.+.+.|++..|++++|||.+...+......... .
T Consensus 301 ~~iDG~-R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~g--g 377 (633)
T PRK12313 301 YHLDGL-RVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVG--G 377 (633)
T ss_pred hCCcEE-EEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCC--C
Confidence 233444 22210 0110 1111234445555555556678999999886544433332222 2
Q ss_pred ccccccccHHHHHHhhc----C-CChHHHHHHHH-HHhhcCCCCCcccccccCCCh-----hhHhhhcCH------HHHH
Q psy15051 822 QGTHLSVNYEIMNKFGA----T-SNAKDLENVVN-AYLKSLPSGKWSSWMVGGHSI-----TRIATRYSP------DLVD 884 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~----~-~~~~~l~~~l~-~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~------~~~k 884 (1065)
.++|+.++..+...+.. . .........+. .....+.. .+ ++++|||+ .|+++++.+ .++|
T Consensus 378 ~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~--~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r 454 (633)
T PRK12313 378 LGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSE-NF--VLPFSHDEVVHGKKSLMHKMPGDRWQQFANLR 454 (633)
T ss_pred CCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhc-cc--ccCCCCcccccCCccHHHhcCCCHHHHHHHHH
Confidence 56788887666653311 1 10000000000 00011111 11 26689999 688888753 3678
Q ss_pred HHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCC
Q psy15051 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964 (1065)
Q Consensus 885 la~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~ 964 (1065)
++++++||+||+||||||+|+|+.+.. + .+.+|+|+....
T Consensus 455 ~~~~~~~t~pG~Plif~G~E~g~~~~~-------~------------------~~~~l~W~~~~~--------------- 494 (633)
T PRK12313 455 LLYTYMITHPGKKLLFMGSEFGQFLEW-------K------------------HDESLEWHLLED--------------- 494 (633)
T ss_pred HHHHHHHhCCCCcEeecccccccCccC-------C------------------ccCCCCccccCC---------------
Confidence 888999999999999999999998752 1 236788875321
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-----CeEEEcc---CCcEEEEEEEc--CCcEEEEEEECCCCcE
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-----DYKISTP---NNYVFILTRTE--GSTSVYLIINLNSRTE 1034 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-----~~~~l~~---~~~viaf~R~~--~~~~vlVv~N~s~~~~ 1034 (1065)
...+.++++||+|++||+++|+|+.| .++++.. +++|+||.|.. +++.++||+|+++.++
T Consensus 495 ----------~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~ 564 (633)
T PRK12313 495 ----------PMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVER 564 (633)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcc
Confidence 11346999999999999999999754 4666654 34699999997 7789999999998654
Q ss_pred E---EEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1035 T---VDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1035 ~---v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+ +.++ .++.++.+++|+...++
T Consensus 565 ~~y~i~~p----~~g~~~~ilnsd~~~yg 589 (633)
T PRK12313 565 EDYRIGVP----VAGIYEEILNTDSEEFG 589 (633)
T ss_pred cceeECCC----CCCeEEEEEcCCchhcC
Confidence 3 3333 25889999998876544
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.7e-42 Score=423.84 Aligned_cols=368 Identities=20% Similarity=0.275 Sum_probs=254.1
Q ss_pred hcccceEEEEecccccCcCCC----CCCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCCC-----
Q psy15051 556 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGPN----- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d----~~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~~----- 624 (1065)
.|+++|||||||++|++.+++ ..|+|+ ||+++ |||||+||||+||||||+++.+
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~---------------Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~ 216 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYA---------------GLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL 216 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHH---------------HHhccchhHHHHHcCCCEEEECCcccCCcccccc
Confidence 479999999999999975432 246666 99985 9999999999999999999853
Q ss_pred -----CCCCCcCCCCcccCCCC---CCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccC
Q psy15051 625 -----GDIGYDISNHTEVGKDF---GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLN 696 (1065)
Q Consensus 625 -----~~~GY~~~dy~~idp~~---Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 696 (1065)
++|||++.|||+|||+| |+++|||+||++|
T Consensus 217 ~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~------------------------------------------ 254 (688)
T TIGR02100 217 EKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRAL------------------------------------------ 254 (688)
T ss_pred ccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHH------------------------------------------
Confidence 46999999999999999 6799999999999
Q ss_pred ccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh-hhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 697 PVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK-SAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~-~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+||++..+..... ...+. ....||.......+. .....+|+.
T Consensus 255 -----------------------H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~-d~~~yy~~~~~~~~~-~~~~~g~gn 309 (688)
T TIGR02100 255 -----------------------HDAGIEVILDVVYNHTAEGNELGPTLSFRGI-DNASYYRLQPDDKRY-YINDTGTGN 309 (688)
T ss_pred -----------------------HHCCCEEEEEECcCCccCcCCCCCcccccCC-CCCcceEecCCCCce-ecCCCCccc
Confidence 8888888888888888876543211 11111 122444433221122 112223333
Q ss_pred -ccCCCHHHHHHHHHHHHh---------------------------------------cCCceEEEeecCCCChHHHhhh
Q psy15051 776 -INITSREVMRSQKDVVQS---------------------------------------FPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~---------------------------------------~~~~~~ligE~~~~~~~~~~~y 815 (1065)
+|+.+|+|+++|.++++. ..+++++|||.|...+. .+
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~---~~ 386 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPG---GY 386 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCCC---cc
Confidence 999999999999998332 12258999999986321 11
Q ss_pred ccCCCCccccccccHHHHHHh----hc-CCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC-------
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKF----GA-TSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS------- 879 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~------- 879 (1065)
. .+.....-..+|..+++.+ .+ .....++...+......+. .....++|+++||+.|+.+++.
T Consensus 387 ~-~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~ 465 (688)
T TIGR02100 387 Q-VGNFPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNE 465 (688)
T ss_pred c-ccCCCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchh
Confidence 1 1111111133555555544 33 2345566666654332222 2234557999999988777521
Q ss_pred ---------------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccc
Q psy15051 880 ---------------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFG 926 (1065)
Q Consensus 880 ---------------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~ 926 (1065)
.++.|++++++|++||+||||||||+|+++.. ..
T Consensus 466 ~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G-----~~-------- 532 (688)
T TIGR02100 466 ANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQG-----NN-------- 532 (688)
T ss_pred hccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCC-----CC--------
Confidence 12578889999999999999999999999642 01
Q ss_pred cccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe----
Q psy15051 927 KDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY---- 1002 (1065)
Q Consensus 927 ~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~---- 1002 (1065)
+.++++.....|+|+... ..+++++++|+||+|||++|+|+.+++
T Consensus 533 ----n~y~~~~~~~~~dW~~~~---------------------------~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~ 581 (688)
T TIGR02100 533 ----NAYCQDNEIGWVDWSLDE---------------------------GDDELLAFTKKLIALRKAHPVLRRERFFDGR 581 (688)
T ss_pred ----CCccCCCcccccCccccc---------------------------ccHHHHHHHHHHHHHHHhCchhcccccccCC
Confidence 234566566789998532 235799999999999999999987643
Q ss_pred ---------EEEcc-------------CCcEEEEEEEcC--------CcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 1003 ---------KISTP-------------NNYVFILTRTEG--------STSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 1003 ---------~~l~~-------------~~~viaf~R~~~--------~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
.++.. ...+++|..... .+.++|++|.+.+.+++.||.. +..|++++
T Consensus 582 ~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~---~~~w~~~~ 658 (688)
T TIGR02100 582 NEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGG---GGRWELVL 658 (688)
T ss_pred cccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCC---CCcEEEEe
Confidence 33321 237899888732 1579999999999999999862 35788888
Q ss_pred ccCC
Q psy15051 1053 SSVN 1056 (1065)
Q Consensus 1053 ~s~~ 1056 (1065)
++..
T Consensus 659 dt~~ 662 (688)
T TIGR02100 659 DTAD 662 (688)
T ss_pred cCCC
Confidence 7753
No 15
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.2e-42 Score=420.18 Aligned_cols=351 Identities=19% Similarity=0.244 Sum_probs=233.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
+.+..+|||+|+++|+. .|+++ ||+++| ||||+||||+||||||++++. .+|||+++|
T Consensus 135 ~~~~~~iYe~hv~~~~~-----~g~~~---------------~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~ 194 (613)
T TIGR01515 135 YEKPVSIYELHLGSWRH-----GLSYR---------------ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTG 194 (613)
T ss_pred ccCCceEEEEehhhccC-----CCCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCccc
Confidence 34568999999999975 38899 999997 999999999999999999974 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+++|||++|||+||++|
T Consensus 195 y~~~~~~~Gt~~dlk~lV~~~----------------------------------------------------------- 215 (613)
T TIGR01515 195 YYAPTSRFGTPDDFMYFVDAC----------------------------------------------------------- 215 (613)
T ss_pred CcccccccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH-
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV- 790 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~- 790 (1065)
|++||+||||+|+||++.++..+... .+ . .+|......++. ...|.. +|+.+++||++|.++
T Consensus 216 ------H~~Gi~VilD~V~NH~~~~~~~~~~~-~~---~-~~y~~~~~~~~~----~~~w~~~~~~~~~~~Vr~~l~~~~ 280 (613)
T TIGR01515 216 ------HQAGIGVILDWVPGHFPKDDHGLAEF-DG---T-PLYEHKDPRDGE----HWDWGTLIFDYGRPEVRNFLVANA 280 (613)
T ss_pred ------HHCCCEEEEEecccCcCCccchhhcc-CC---C-cceeccCCccCc----CCCCCCceecCCCHHHHHHHHHHH
Confidence 55555555555555555443322211 00 0 011111110010 112322 444555555554444
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
|++..|++++|||.+...+......
T Consensus 281 ~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~ 360 (613)
T TIGR01515 281 LYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPT 360 (613)
T ss_pred HHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccc
Confidence 4445668999999876544433333
Q ss_pred ccCCCCccccccccHHHHHHhhcCCChHHHHHHHH------HHhhcCCCCCcccccccCCCh-----hhHhhhcCH----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVN------AYLKSLPSGKWSSWMVGGHSI-----TRIATRYSP---- 880 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~---- 880 (1065)
... ..++|+.+++.+...+..-.....+..... .....+. ..+. +++|||+ .|+..++.+
T Consensus 361 ~~g--g~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~--~~~sHD~~~~g~~~i~~~~~g~~~~ 435 (613)
T TIGR01515 361 DEG--GLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFV--LPLSHDEVVHGKKSLLNKMPGDYWQ 435 (613)
T ss_pred cCC--cCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccc--cCCCCCCcccCcccHHHhCCCchHH
Confidence 332 256888888766654321111111111100 0000111 1112 6789998 678777654
Q ss_pred --HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCC
Q psy15051 881 --DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958 (1065)
Q Consensus 881 --~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~w 958 (1065)
.++|++++++||+||+||||||+|+|+.++. + .+.+|+|+...
T Consensus 436 ~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~-------~------------------~~~~l~W~~~~---------- 480 (613)
T TIGR01515 436 KFANYRALLGYMWAHPGKKLLFMGSEFAQGSEW-------N------------------DTEQLDWHLLS---------- 480 (613)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCC-------C------------------CCccCCCcccc----------
Confidence 3678899999999999999999999997652 0 12578886421
Q ss_pred CCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcC--CcEEEEEEE
Q psy15051 959 LPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEG--STSVYLIIN 1028 (1065)
Q Consensus 959 l~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~--~~~vlVv~N 1028 (1065)
....+.++++||+|++||+++|+|+.|+ ++++.. +++|++|.|+.+ ++.++||+|
T Consensus 481 ---------------~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N 545 (613)
T TIGR01515 481 ---------------FPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICN 545 (613)
T ss_pred ---------------CcccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEe
Confidence 0123569999999999999999997654 444543 457999999964 568999999
Q ss_pred CCCCcEE---EEcCCCccCCCcEEEEEccCCCcC
Q psy15051 1029 LNSRTET---VDLSDCIENGGDVAIFTSSVNSGL 1059 (1065)
Q Consensus 1029 ~s~~~~~---v~l~~~~~~~~~~~v~~~s~~~~~ 1059 (1065)
+++.+.. |.++. +|.++++++|+...+
T Consensus 546 ~~~~~~~~Y~i~~p~----~g~~~~il~Sd~~~~ 575 (613)
T TIGR01515 546 FTPVVRHQYRVGVPQ----PGQYREVLNSDSETY 575 (613)
T ss_pred CCCCCccceEeCCCC----CCeEEEEEeCChhhc
Confidence 9997554 65542 589999999887554
No 16
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.7e-42 Score=427.01 Aligned_cols=395 Identities=15% Similarity=0.166 Sum_probs=234.8
Q ss_pred cccceEEEEecccccCc-CCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 557 WKNTVIYQILVPSFKDS-NNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~-~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
+++++|||+|+++|++. +.++.|+|+ ||+++| ||||+||||+||||||++++. .+|||++.|
T Consensus 239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~---------------~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~ 303 (726)
T PRK05402 239 DAPISIYEVHLGSWRRHEDGGRFLSYR---------------ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTG 303 (726)
T ss_pred cCCcEEEEEehhhhccCCCCCcccCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCccc
Confidence 46789999999999986 555678999 999996 999999999999999999875 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+|+|||++|||+||++||++||+||||+|++| .+...... ..+...+.++.. ++.
T Consensus 304 y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH---~~~~~~~~----------~~~~~~~~y~~~---~~~----- 362 (726)
T PRK05402 304 YYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAH---FPKDAHGL----------ARFDGTALYEHA---DPR----- 362 (726)
T ss_pred CCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCccch----------hccCCCcceecc---CCc-----
Confidence 999999999999999999999666665555555532 11110000 000000000000 000
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCC-------------CCcc-----
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPN-------------NWKH----- 775 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~-------------~W~~----- 775 (1065)
..+..+-.. ..+|. .++-.++.+.. .-.||+...+.||+ |++.. .|..
T Consensus 363 ----~~~~~~w~~---~~~n~---~~~~v~~~l~~---~~~~W~~e~~iDG~-R~D~v~~~~~~~~~~~~g~~~~~~~~~ 428 (726)
T PRK05402 363 ----EGEHPDWGT---LIFNY---GRNEVRNFLVA---NALYWLEEFHIDGL-RVDAVASMLYLDYSRKEGEWIPNIYGG 428 (726)
T ss_pred ----CCccCCCCC---ccccC---CCHHHHHHHHH---HHHHHHHHhCCcEE-EECCHHHhhhccccccccccccccccC
Confidence 000000000 00000 01111110000 00122222233454 33210 0110
Q ss_pred -ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHH----Hhh-cCCChHHHHHHH
Q psy15051 776 -INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN----KFG-ATSNAKDLENVV 849 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~----~~~-~~~~~~~l~~~l 849 (1065)
-|....++++.+.+.|++..|++++|||.+...+......... ..++|+.++..++. .+. ...........+
T Consensus 429 ~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~--G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~ 506 (726)
T PRK05402 429 RENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEG--GLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNEL 506 (726)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCC--CCCCCceecCCcchHHHHHHhhCcccccccccch
Confidence 0111234555555556666779999999765433322222222 24577776654433 221 111100000000
Q ss_pred H-HHhhcCCCCCcccccccCCChh-----hHhhhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCC
Q psy15051 850 N-AYLKSLPSGKWSSWMVGGHSIT-----RIATRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQ 917 (1065)
Q Consensus 850 ~-~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~ 917 (1065)
. .....+.. .+ .+++|||+. |+..++++ .++|++++++||+||+||||||||+|+.+..
T Consensus 507 ~~~~~~~~~e-~~--~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~------ 577 (726)
T PRK05402 507 TFSLLYAYSE-NF--VLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW------ 577 (726)
T ss_pred hHHHhHhhhc-cc--cCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC------
Confidence 0 00111111 12 267899984 67776643 3678889999999999999999999999852
Q ss_pred CCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc
Q psy15051 918 RDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997 (1065)
Q Consensus 918 ~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL 997 (1065)
+ .+.+|+|+.... ...+.++++||+|++||+++|+|
T Consensus 578 -~------------------~~~~l~W~~~~~-------------------------~~~~~l~~~~k~Li~Lr~~~~aL 613 (726)
T PRK05402 578 -N------------------HDASLDWHLLDF-------------------------PWHRGVQRLVRDLNHLYRAEPAL 613 (726)
T ss_pred -C------------------ccCcCCccccCC-------------------------cchHHHHHHHHHHHHHHHhChhh
Confidence 1 246788975321 11346999999999999999999
Q ss_pred cCCC-----eEEEcc---CCcEEEEEEEcC--CcEEEEEEECCCCcE---EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 998 RMGD-----YKISTP---NNYVFILTRTEG--STSVYLIINLNSRTE---TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 998 ~~G~-----~~~l~~---~~~viaf~R~~~--~~~vlVv~N~s~~~~---~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+.|+ +.++.. +++|+||.|..+ ++.+|||+|+++.++ .+.++. ++.++++++|+...++
T Consensus 614 ~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~----~g~~~~ilnsd~~~~g 685 (726)
T PRK05402 614 HELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ----AGRWREVLNTDAEHYG 685 (726)
T ss_pred hccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC----CCeEEEEEcCcchhhC
Confidence 7654 455543 457999999954 589999999998653 444442 5899999998876543
No 17
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.5e-41 Score=412.00 Aligned_cols=358 Identities=16% Similarity=0.221 Sum_probs=243.4
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
.+..+|||+|+++|+....+..|+++ |++++| +|||+||||+|+||||++++. ++|||++.+|
T Consensus 142 ~~~~~IYE~Hvg~f~~~~~g~~~ty~---------------~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~ 206 (639)
T PRK14706 142 DQPISIYEVHVGSWARRDDGWFLNYR---------------ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY 206 (639)
T ss_pred CCCcEEEEEehhhcccCCCCCccCHH---------------HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc
Confidence 34589999999999865433356777 999997 899999999999999999864 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|+|+++|||++|||+||++|
T Consensus 207 ~~~~~~~g~~~~~~~lv~~~------------------------------------------------------------ 226 (639)
T PRK14706 207 YAPTSRLGTPEDFKYLVNHL------------------------------------------------------------ 226 (639)
T ss_pred cccccccCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH--
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV-- 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~-- 790 (1065)
|++||+||||+|+||++.++.++.. .++ ..+|.+.+...|. ..+|.. +|+.+++|+++|.+.
T Consensus 227 -----H~~gi~VilD~v~nH~~~~~~~l~~-~dg----~~~y~~~~~~~g~----~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 227 -----HGLGIGVILDWVPGHFPTDESGLAH-FDG----GPLYEYADPRKGY----HYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred -----HHCCCEEEEEecccccCcchhhhhc-cCC----CcceeccCCcCCc----CCCCCCcccCCCCHHHHHHHHHHHH
Confidence 6666677777777777665433221 111 1122222211121 234544 666677777777666
Q ss_pred ----------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhccC
Q psy15051 791 ----------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGT 818 (1065)
Q Consensus 791 ----------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~ 818 (1065)
|++..|++++|||.+...+........
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~- 371 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY- 371 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-
Confidence 333446799999999875554444322
Q ss_pred CCCccccccccHHHHHHhhcCCChHHHHHHH-HHHhhcCC--CCCcccccccCCChhhHhh-----hc-C-----HHHHH
Q psy15051 819 GDTQGTHLSVNYEIMNKFGATSNAKDLENVV-NAYLKSLP--SGKWSSWMVGGHSITRIAT-----RY-S-----PDLVD 884 (1065)
Q Consensus 819 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~--~~~~~~~flenHD~~Rl~s-----~~-~-----~~~~k 884 (1065)
..+||+.++..+++.+..-.....+.+.. ...+.... .....-.+++|||+.+... +. | ..++|
T Consensus 372 --G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r 449 (639)
T PRK14706 372 --GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYR 449 (639)
T ss_pred --CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHH
Confidence 36799999988877432111111111110 00000000 0001112789999977532 23 2 14578
Q ss_pred HHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCC
Q psy15051 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964 (1065)
Q Consensus 885 la~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~ 964 (1065)
++++++||+||+||||||+|+|+.+.. .++.+|+|.....
T Consensus 450 ~~~~~~~t~PG~pLiFmG~EfG~~~ew-------------------------~~~~~l~W~l~~~--------------- 489 (639)
T PRK14706 450 AFLAMMWTTPGKKLLFMGQEFAQGTEW-------------------------NHDASLPWYLTDV--------------- 489 (639)
T ss_pred HHHHHHHhCCCCcEEEeccccCCCCCC-------------------------CcccCCCCcccCC---------------
Confidence 889999999999999999999975431 1457788875321
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcCC--cEEEEEEECCCC--
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEGS--TSVYLIINLNSR-- 1032 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~~--~~vlVv~N~s~~-- 1032 (1065)
...+.+.+++|+|++||+++|||+.|+ ++++.. +++|+||.|..++ +.+|||+|+++.
T Consensus 490 ----------~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~ 559 (639)
T PRK14706 490 ----------PDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYR 559 (639)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCc
Confidence 012359999999999999999998776 455543 4579999999643 459999999984
Q ss_pred -cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1033 -TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1033 -~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
...|.++. +|.++++++|+...++
T Consensus 560 ~~y~ig~p~----~g~~~~i~nsd~~~~g 584 (639)
T PRK14706 560 EQYRIGVPQ----GGEYRVLLSTDDGEYG 584 (639)
T ss_pred CCeEECCCC----CCeEEEEEcCCccccC
Confidence 55666664 6999999998876654
No 18
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.7e-41 Score=407.51 Aligned_cols=355 Identities=19% Similarity=0.259 Sum_probs=241.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHh--hhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIE--KIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~--kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
.|+++||||+|++.|+..+++..++++ |+|. |+++ +|||||+||||+||||||+++.+
T Consensus 147 ~~~~~vIYE~hvr~ft~~~~~~~~~~~-----Gtf~------g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~ 215 (658)
T PRK03705 147 PWGSTVIYEAHVRGLTYLHPEIPVEIR-----GTYA------ALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGL 215 (658)
T ss_pred CccccEEEEEehhhhcccCCCCCcccc-----ccHH------HhhcccchHHHHHcCCCEEEecCcccCCCccccccccc
Confidence 478999999999999975544332222 3333 7776 59999999999999999999753
Q ss_pred -CCCCCcCCCCcccCCCCCCH-----HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCcc
Q psy15051 625 -GDIGYDISNHTEVGKDFGTM-----EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPV 698 (1065)
Q Consensus 625 -~~~GY~~~dy~~idp~~Gt~-----edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 698 (1065)
++|||++.|||+|||+|||. +|||+||++|
T Consensus 216 ~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~-------------------------------------------- 251 (658)
T PRK03705 216 SNYWGYNPLAMFALDPAYASGPETALDEFRDAVKAL-------------------------------------------- 251 (658)
T ss_pred ccccCcccccccccccccCCCCcchHHHHHHHHHHH--------------------------------------------
Confidence 57999999999999999984 7999999999
Q ss_pred ccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC---chhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 699 YAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK---HDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~---~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+|||+.. ++++.. .+. ....||. ... +|. ..+|..
T Consensus 252 ---------------------H~~GI~VIlDvV~NHt~~~~~~~~~~~~--~~~-d~~~yy~-~~~-~g~----~~~~~g 301 (658)
T PRK03705 252 ---------------------HKAGIEVILDVVFNHSAELDLDGPTLSL--RGI-DNRSYYW-IRE-DGD----YHNWTG 301 (658)
T ss_pred ---------------------HHCCCEEEEEEcccCccCcCCCCcchhc--ccC-CCccceE-ECC-CCC----cCCCCC
Confidence 8888888888888998853 333321 111 1123443 322 232 223332
Q ss_pred ----ccCCCHHHHHHHHHHHHh--------------------------------------cCCceEEEeecCCCChHHHh
Q psy15051 776 ----INITSREVMRSQKDVVQS--------------------------------------FPLILMIITEAYSPSLEKVA 813 (1065)
Q Consensus 776 ----ln~~n~~v~~~l~~~lk~--------------------------------------~~~~~~ligE~~~~~~~~~~ 813 (1065)
+|+++|+|+++|.++++. ..+++.++||.|...+..
T Consensus 302 ~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~~~~-- 379 (658)
T PRK03705 302 CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIGPGG-- 379 (658)
T ss_pred ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCCCCh--
Confidence 999999999999998322 112789999999863221
Q ss_pred hhccCCCCccccccccHHHHHHhh-----cCCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC-----
Q psy15051 814 KYYGTGDTQGTHLSVNYEIMNKFG-----ATSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS----- 879 (1065)
Q Consensus 814 ~y~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~----- 879 (1065)
+ ..+.....-..||..+++.++ ......++...+......++ .....++|+++||+.++.+++.
T Consensus 380 -~-~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~h 457 (658)
T PRK03705 380 -Y-QVGNFPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQKH 457 (658)
T ss_pred -h-hhcCCCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhccc
Confidence 1 111111111234555554432 23445555555543322221 2334556999999988877431
Q ss_pred -----------------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccc
Q psy15051 880 -----------------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYI 924 (1065)
Q Consensus 880 -----------------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~ 924 (1065)
.++.|++++++|+++|+||||+|||+|+++..
T Consensus 458 n~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G------------- 524 (658)
T PRK03705 458 NEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHG------------- 524 (658)
T ss_pred hhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCC-------------
Confidence 12467889999999999999999999999542
Q ss_pred cccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe--
Q psy15051 925 FGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-- 1002 (1065)
Q Consensus 925 ~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-- 1002 (1065)
+.+.++++.....|+|+.. .+++++++|+||+|||++|+|+..++
T Consensus 525 ----~nN~y~~~~~i~~~dW~~~-----------------------------~~~l~~f~k~Li~lRk~~~~l~~~~~~~ 571 (658)
T PRK03705 525 ----NNNAYCQDNALTWLDWSQA-----------------------------DRGLTAFTAALIHLRQRIPALTQNRWWE 571 (658)
T ss_pred ----CCCCccCCCCccccccchh-----------------------------hhHHHHHHHHHHHHHHhChhhccccccc
Confidence 1124456656677888742 14699999999999999999976544
Q ss_pred ------EEEccC------------CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEc
Q psy15051 1003 ------KISTPN------------NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 1003 ------~~l~~~------------~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
.++..+ ...++|... +.++|++|.+.++++++||. +.|+++++
T Consensus 572 ~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~v~~N~~~~~~~~~lp~-----~~w~~~~~ 632 (658)
T PRK03705 572 EGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS---DRWLIAINATLEVTEIVLPE-----GEWHAIPP 632 (658)
T ss_pred CCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC---CCEEEEECCCCCCeEEECCC-----cceEEEEc
Confidence 333322 234555543 45999999999999999985 57888853
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.8e-40 Score=426.29 Aligned_cols=357 Identities=20% Similarity=0.303 Sum_probs=244.1
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHH--hhhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGII--EKIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~--~kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
-|++.||||+|++.|+.....-.|+++ |+|. ||. ++|+|||+||||+||||||+++..
T Consensus 155 ~~~d~vIYE~hvr~ft~~~~~~gg~~~-----Gt~~------~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~ 223 (1221)
T PRK14510 155 DWDDSPLYEMNVRGFTLRHDFFPGNLR-----GTFA------KLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGL 223 (1221)
T ss_pred CcccCeEEEEccchhhccCCCCCcccC-----cHHh------hcCCchhHHHHHHcCCCEEEeCCccccCcccccccccC
Confidence 378999999999999864433345555 3333 555 567799999999999999998753
Q ss_pred -CCCCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccC
Q psy15051 625 -GDIGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAG 701 (1065)
Q Consensus 625 -~~~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 701 (1065)
+||||++.||++|||+|| +.+|||+||++|
T Consensus 224 ~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~----------------------------------------------- 256 (1221)
T PRK14510 224 SNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEA----------------------------------------------- 256 (1221)
T ss_pred cCcCCCCCCCCCCcChhhccCcHHHHHHHHHHH-----------------------------------------------
Confidence 469999999999999999 999999999999
Q ss_pred CCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc---ccC
Q psy15051 702 SGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---INI 778 (1065)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~---ln~ 778 (1065)
|++||+||||+|+|||+..+.+.............||....+..+. ..+.|+. +|+
T Consensus 257 ------------------H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~---y~~~~G~gn~~n~ 315 (1221)
T PRK14510 257 ------------------QSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKE---YENWWGCGNLPNL 315 (1221)
T ss_pred ------------------HHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCc---ccCCCCCCCcccc
Confidence 8888888888899999877665321110111123344432211111 1222222 788
Q ss_pred CCHHHHHHHHHHHHh----------------------------------cCCceEE-----EeecCCCChHHHhhhccCC
Q psy15051 779 TSREVMRSQKDVVQS----------------------------------FPLILMI-----ITEAYSPSLEKVAKYYGTG 819 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~----------------------------------~~~~~~l-----igE~~~~~~~~~~~y~~~~ 819 (1065)
++++|++++.++++. ..++.++ |||.|..... .|....
T Consensus 316 ~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~---~~~~g~ 392 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLG---GYQYGK 392 (1221)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCC---ccccCC
Confidence 899999999888332 2334444 9999986321 111111
Q ss_pred CC---ccccccccHHHHHHhhcCCC-hHHHHHHHHHHhhcCCC----CCcccccccCCChhhHhhhcC------------
Q psy15051 820 DT---QGTHLSVNYEIMNKFGATSN-AKDLENVVNAYLKSLPS----GKWSSWMVGGHSITRIATRYS------------ 879 (1065)
Q Consensus 820 ~~---~~~d~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~----~~~~~~flenHD~~Rl~s~~~------------ 879 (1065)
.. ..++..|...++..+.+... ..++...+......++. ....++|++|||+.|+.+.++
T Consensus 393 f~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~ 472 (1221)
T PRK14510 393 FPQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGED 472 (1221)
T ss_pred CCcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHHHhhhccccchhcccc
Confidence 11 22444555555555554433 56677777655555542 234556999999999988654
Q ss_pred ----------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccc
Q psy15051 880 ----------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931 (1065)
Q Consensus 880 ----------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~ 931 (1065)
.+++|++++++|+++|+||||||||+|.+... . .+
T Consensus 473 nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~G-n----------------~n 535 (1221)
T PRK14510 473 NRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNG-N----------------NN 535 (1221)
T ss_pred ccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCC-C----------------CC
Confidence 12578899999999999999999999987642 0 12
Q ss_pred ccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc----
Q psy15051 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP---- 1007 (1065)
Q Consensus 932 ~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~---- 1007 (1065)
.++.+.+|.+|+|+... +++++++|+||+|||++|+|+.|++.....
T Consensus 536 ~y~~~~~r~~~~W~~~~-----------------------------~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~ 586 (1221)
T PRK14510 536 GYAQDNNRGTYPWGNED-----------------------------EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDAS 586 (1221)
T ss_pred CCCCCCccccCCccccc-----------------------------HHHHHHHHHHHHHHHhChhhccCccccCcccccC
Confidence 23445578999997521 369999999999999999999888764321
Q ss_pred -CCcEEEEE----------------------EE--cC----CcEEEEEEECCCCcEEEEcCC
Q psy15051 1008 -NNYVFILT----------------------RT--EG----STSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1008 -~~~viaf~----------------------R~--~~----~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
.++|..|. .. .+ ++.++|++|.+.+++++.||.
T Consensus 587 ~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 587 GGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred CCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 12233332 22 11 247999999999999999974
No 20
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.8e-40 Score=394.87 Aligned_cols=395 Identities=16% Similarity=0.166 Sum_probs=244.1
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
.++++|||+|+++|+.+.+++.++++ +++++ |+|||+||||+||||||++++. .+|||++.+|
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~---------------~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~ 308 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWP---------------TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGL 308 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcC
Confidence 56789999999999986655567777 99988 5999999999999999999875 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|+|+|+|||++|||+||++||++||+||||+|++| .+... .....+...+.|+... +
T Consensus 309 ~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH---~~~d~----------~~l~~fdg~~~Ye~~d---~------- 365 (730)
T PRK12568 309 YAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAH---FPDDA----------HGLAQFDGAALYEHAD---P------- 365 (730)
T ss_pred CccCcccCCHHHHHHHHHHHHHCCCEEEEEecccc---CCccc----------cccccCCCccccccCC---C-------
Confidence 99999999999999999999666666666666532 22110 0000000001110000 0
Q ss_pred hhhhhhhcCcEE-EEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCC-------------CCCcc-----
Q psy15051 715 AESMEHRAGMKI-LVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPP-------------NNWKH----- 775 (1065)
Q Consensus 715 ~~~~~H~~Gi~v-IlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~-------------~~W~~----- 775 (1065)
..|... --++++|.. ++-.++.+.. .-.||+...+.||+ |++. ..|..
T Consensus 366 ------~~g~~~~W~~~~~N~~---~peVr~~li~---~a~~Wl~eyhIDG~-R~DAva~mly~d~~r~~g~w~pn~~gg 432 (730)
T PRK12568 366 ------REGMHRDWNTLIYNYG---RPEVTAYLLG---SALEWIEHYHLDGL-RVDAVASMLYRDYGRAEGEWVPNAHGG 432 (730)
T ss_pred ------cCCccCCCCCeecccC---CHHHHHHHHH---HHHHHHHHhCceEE-EEcCHhHhhhhccccccccccccccCC
Confidence 000000 000011110 0110000000 00122222233444 3321 11221
Q ss_pred -ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhc-----CCChHHHHHHH
Q psy15051 776 -INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA-----TSNAKDLENVV 849 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~l~~~l 849 (1065)
-|....++.+.+.+.+++..|++++|||.+...+......... ..+|++.++..+++.+.. +.....-...+
T Consensus 433 ~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~g--GlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~l 510 (730)
T PRK12568 433 RENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDG--GLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQL 510 (730)
T ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCC--CCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhh
Confidence 1222234555555556667779999999876645544444432 367999999888775422 12111111212
Q ss_pred HHHhhcCCCCCcccccccCCCh-----hhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCC
Q psy15051 850 NAYLKSLPSGKWSSWMVGGHSI-----TRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQR 918 (1065)
Q Consensus 850 ~~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~ 918 (1065)
...+...-...+. +..|||+ .++..+..++ .+|++++++|+.||.||||||+|+|+....
T Consensus 511 tf~~~y~~~e~fv--lp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew------- 581 (730)
T PRK12568 511 TFGLVYAFSERFV--LPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW------- 581 (730)
T ss_pred hhhhhhhhhccEe--ccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc-------
Confidence 2111111111122 6789999 5666665432 467888999999999999999999988753
Q ss_pred CccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 919 Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
....+++|..... ...+.+.+++|+|++||+++|||.
T Consensus 582 ------------------~~~~~ldW~ll~~-------------------------~~h~~~~~~~~dLn~ly~~~paL~ 618 (730)
T PRK12568 582 ------------------NHDQSLDWHLLDG-------------------------ARHRGMQQLVGDLNAALRRTPALY 618 (730)
T ss_pred ------------------cCCCCccccccCC-------------------------hhHHHHHHHHHHHHHHHHhChhhh
Confidence 1225677875321 123568899999999999999996
Q ss_pred CCC-----eEEEcc---CCcEEEEEEEcCC---cEEEEEEECCCCcE---EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 999 MGD-----YKISTP---NNYVFILTRTEGS---TSVYLIINLNSRTE---TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 999 ~G~-----~~~l~~---~~~viaf~R~~~~---~~vlVv~N~s~~~~---~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.++ |+++.. +++|+||.|+..+ +.+|||+||++.++ .|.++. +|.++.+++|+...++
T Consensus 619 ~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~----~G~~~eilNsd~~~yg 690 (730)
T PRK12568 619 RGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPR----AGGWREILNTDSAHYG 690 (730)
T ss_pred cccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCC----CCeEEEEEcCchhhhC
Confidence 654 566654 3479999999643 56999999998754 355553 5999999999877665
No 21
>KOG0471|consensus
Probab=100.00 E-value=3.2e-41 Score=404.00 Aligned_cols=338 Identities=23% Similarity=0.342 Sum_probs=255.8
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.++||+++++|||+|+||+++++++.||++||++|||||+ +||+| ++|++ |++++++.++||
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~-~lG~t---------------aiWis-P~~~s~~~~~GY- 72 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIK-ELGFT---------------AIWLS-PFTKSSKPDFGY- 72 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHH-hcCCc---------------eEEeC-CCcCCCHHHhcc-
Confidence 4799999999999999999999999999999999999999 99999 66666 888899999999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++++| +.|+|+|||+|||++||. +|++||++| +|+ |+||++
T Consensus 73 -------~~~d~-------~~l~p~fGt~edf~~Li~~~h~~gi~ii--------~D~-------viNh~~--------- 114 (545)
T KOG0471|consen 73 -------DASDL-------EQLRPRFGTEEDFKELILAMHKLGIKII--------ADL-------VINHRS--------- 114 (545)
T ss_pred -------Cccch-------hhhcccccHHHHHHHHHHHHhhcceEEE--------Eee-------ccccCC---------
Confidence 66666 677779999999999997 699999999 887 888865
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQR 262 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1065)
.+|+||...+..-..| -|+.+-|-+..-. ...+.+|.+|.+.+..
T Consensus 115 -~~~~wf~~~~~~~~~y-----~d~~~~~~~~~~~-----------------------------~g~~~~p~nw~~~~~~ 159 (545)
T KOG0471|consen 115 -DEVEWFKASPTSKTGY-----EDWYPWHDGSSLD-----------------------------VGKRIPPLNWLSVFGG 159 (545)
T ss_pred -ccccccccCccccccc-----eeeeeccCccccc-----------------------------ccCCCCccchHhhhcc
Confidence 7788887765433223 2333222111100 1122233444333211
Q ss_pred -cC-CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 263 -VY-PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 263 -~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
.+ .++...++++|+|. ..|||||++||+|+ ++
T Consensus 160 s~~~~~e~~~~~~l~~~~-------------------~~~pDln~~n~~V~---------------------------~~ 193 (545)
T KOG0471|consen 160 SAWPFDEGRQKYYLGQFA-------------------VLQPDLNYENPDVR---------------------------KA 193 (545)
T ss_pred ccCcccccccceeccchh-------------------hcCCCCCCCCHHHH---------------------------HH
Confidence 11 11234456699999 79999999999997 89
Q ss_pred HHHHHH-HHHHcCCCeeeecCccccccCC---CCCCCCCCCcCCCCCCCCCCC-ccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 341 LLCILE-FWLKRGVDGFGMDSVLKLYEHE---SFANEPRLPEAAGRPDSDPTA-YDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 341 ~~~~l~-~Wl~~GvDGfRlDav~~l~~~~---~~~d~p~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
|.++++ ||+++||||||+|+++++.++. ..+|+|+...+.-..+.++.. ..+.|..++++.+.+++.+|..++.+
T Consensus 194 ~~~~l~~~~~~~gvdGfRiD~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 273 (545)
T KOG0471|consen 194 IKEWLRDFWLEKGVDGFRIDAVKGYAGENFKNMWPDEPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDY 273 (545)
T ss_pred HHHHHHHHHhhcCCCeEEEEcccccccccccccccCCCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhhhh
Confidence 999999 9999999999999999999988 888888765433111222222 36889999999999999999999998
Q ss_pred CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHHHhcCc-CCcc
Q psy15051 416 GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFIYCGIV-DDTS 484 (1065)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~Wq~~m~-~~~~ 484 (1065)
.....+++......+.+........+.++ ....+..+.+++|..++.. .+..|...|+ .+.+
T Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~n-------~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (545)
T KOG0471|consen 274 SAAFGFGDKRILQTEAYSSLEQLLRLLEN-------SSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRW 346 (545)
T ss_pred hhcccccchhhhhhhhhccHHHHHhhhcc-------CCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCc
Confidence 77777777777777776653333333332 1111224678888777633 6789999999 6889
Q ss_pred cchhhcccCccccchhhhhhh
Q psy15051 485 ALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 485 ~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
++|+++|||++|.++|++.+.
T Consensus 347 a~W~~~~~~~~r~~sr~~~~~ 367 (545)
T KOG0471|consen 347 AHWVLGNHDQARLASRFGSDS 367 (545)
T ss_pred eeeeecCccchhhHHHhcchh
Confidence 999999999999999999997
No 22
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=392.30 Aligned_cols=396 Identities=32% Similarity=0.579 Sum_probs=280.5
Q ss_pred ceEEEEecccccCcCC------CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCC
Q psy15051 560 TVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISN 633 (1065)
Q Consensus 560 ~vIYei~v~~F~d~~~------d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~d 633 (1065)
+||||++++||.++++ +|+|||+ ||+++|||||+|||++|||+||++++..+|||++.|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~---------------Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~D 65 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLK---------------GITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSD 65 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHH---------------hHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccc
Confidence 4899999999999998 8889999 999999999999999999999999988889999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|+.|||+|||++||++||+++
T Consensus 66 y~~id~~~Gt~~d~~~li~~~----------------------------------------------------------- 86 (505)
T COG0366 66 YTKVDPHFGTEEDFKELVEEA----------------------------------------------------------- 86 (505)
T ss_pred hhhcCcccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCC-CCC-cceeecCCC-------CCCCCCCCCCCc-----c----
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYT-NYYVWKDGL-------NGKPGTPPNNWK-----H---- 775 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~-~~~-d~y~~~~~~-------dG~p~~~~~~W~-----~---- 775 (1065)
|++||+||+|+|+||+|.+|+||.++....+ +.. +||+|.... +..+......|. .
T Consensus 87 ------H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (505)
T COG0366 87 ------HKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLH 160 (505)
T ss_pred ------HHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEE
Confidence 9999999999999999999999999987643 454 899987531 111122223342 1
Q ss_pred --------ccCCCHHHHHHHHHHHHhcC--------CceEE-Ee--------ecCCCChHHHhhh--------ccC--CC
Q psy15051 776 --------INITSREVMRSQKDVVQSFP--------LILMI-IT--------EAYSPSLEKVAKY--------YGT--GD 820 (1065)
Q Consensus 776 --------ln~~n~~v~~~l~~~lk~~~--------~~~~l-ig--------E~~~~~~~~~~~y--------~~~--~~ 820 (1065)
||+.|++|++++.++++.+- -+++- +. +...........+ +.. ..
T Consensus 161 ~~~~~~~dln~~n~~v~~~~~~~~~~W~~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (505)
T COG0366 161 LFSSEQPDLNWENPEVREELLDVVKFWLDKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAI 240 (505)
T ss_pred ecCCCCCCcCCCCHHHHHHHHHHHHHHHHcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999998744311 01000 00 0000000000000 000 00
Q ss_pred ---------------------CccccccccHHHHHHh---hcCCChHHHHHHHHHHhhcCC-CCCcccccccCCChhhHh
Q psy15051 821 ---------------------TQGTHLSVNYEIMNKF---GATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRIA 875 (1065)
Q Consensus 821 ---------------------~~~~d~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~ 875 (1065)
...+++.+++.....- ........+...+..+..... ...+...|..|||++|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hD~~r~~ 320 (505)
T COG0366 241 TDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLSNHDQPRLL 320 (505)
T ss_pred eeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhhhhhcCcccee
Confidence 0001111111111000 011245566666666665554 356666689999999999
Q ss_pred hhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCC-ccc
Q psy15051 876 TRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN-DQE 948 (1065)
Q Consensus 876 s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~-~~~ 948 (1065)
++.+. ..++++++++++++|+|+||||+|+|+.+.........+... ........|+++|.+|+|+ ...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~ 396 (505)
T COG0366 321 SRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVE----LDSIILLSRDGCRTPMPWDENGL 396 (505)
T ss_pred eeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhh----hhhhhhccccCCCCCcCCCCCCC
Confidence 98754 456777889999999999999999999987522211111100 1223345688899999999 677
Q ss_pred ccCCCCCCCCCCCCCCccc-ccHHHhhcC--CCcHHHHHHHHHHHHHhccc-ccCCC-eEEEccC-CcEEEEEEEcCCcE
Q psy15051 949 NAGFSKAKSWLPVHPNYWT-LNAQAEKKT--KPSHYSVYKDLTTLRATSGA-VRMGD-YKISTPN-NYVFILTRTEGSTS 1022 (1065)
Q Consensus 949 ~~gFs~~~~wl~~~~~~~~-~~~~~~~~~--~~~l~~~~r~Li~LRk~~pa-L~~G~-~~~l~~~-~~viaf~R~~~~~~ 1022 (1065)
.+||+...+|+..+..... .+++.+... ..+++.++++|+++|+.+.+ +..|. +..+..+ ..+++|.|...++.
T Consensus 397 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (505)
T COG0366 397 NAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGET 476 (505)
T ss_pred CCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCce
Confidence 8899887889888887755 777776555 77999999999999999844 45573 4433333 37999999988889
Q ss_pred EEEEEECCCCcEEEEcC
Q psy15051 1023 VYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 1023 vlVv~N~s~~~~~v~l~ 1039 (1065)
++|++|++.....+.++
T Consensus 477 ~~~~~n~~~~~~~~~~p 493 (505)
T COG0366 477 LLVVNNLSEEEQEVELP 493 (505)
T ss_pred EEEEEcCCCccccccCC
Confidence 99999999886455554
No 23
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=9.4e-40 Score=389.75 Aligned_cols=310 Identities=19% Similarity=0.256 Sum_probs=210.5
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCCC--CCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGPN--GDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
+||++||||||+||||+|||+||+++.+ .+|||++.||+ +|||+|||.+|||+||++||++||+||+|+
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4999999999999999999999999975 36999999999 799999999999999999955555555555
Q ss_pred cccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC--chhhH
Q psy15051 666 QTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK--HDWFI 743 (1065)
Q Consensus 666 v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~--~~wf~ 743 (1065)
|+ ||++.. |+||+
T Consensus 102 V~-----------------------------------------------------------------NH~~~~~~~~~~~ 116 (479)
T PRK09441 102 VL-----------------------------------------------------------------NHKAGADEKETFR 116 (479)
T ss_pred Cc-----------------------------------------------------------------ccccCCCcceeee
Confidence 55 444421 22332
Q ss_pred hhh------------------------c-cCCCC----CcceeecCCC-------CCC-C-CCCCCCCc-----------
Q psy15051 744 KSA------------------------Q-KIDPY----TNYYVWKDGL-------NGK-P-GTPPNNWK----------- 774 (1065)
Q Consensus 744 ~~~------------------------~-~~~~~----~d~y~~~~~~-------dG~-p-~~~~~~W~----------- 774 (1065)
... . ..+.| .+|+.+.... .+. + .....+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 100 0 00011 1121111100 000 0 00001221
Q ss_pred -----cccCCCHHHHHHHHHHHHh--------------------------------c-CCceEEEeecCCCChHHHhhhc
Q psy15051 775 -----HINITSREVMRSQKDVVQS--------------------------------F-PLILMIITEAYSPSLEKVAKYY 816 (1065)
Q Consensus 775 -----~ln~~n~~v~~~l~~~lk~--------------------------------~-~~~~~ligE~~~~~~~~~~~y~ 816 (1065)
.||+.||+|+++|.++++. . .++++++||.|..++..+..|.
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~ 276 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYL 276 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHH
Confidence 2999999999999987221 1 2478999999998776666676
Q ss_pred cCC--CCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH---HHHHHHHHHHH
Q psy15051 817 GTG--DTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP---DLVDAMNMLTL 891 (1065)
Q Consensus 817 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~---~~~kla~~ll~ 891 (1065)
+.. ....+|+++++.+..++... ....+.+.+..... ........+|++|||++|+.+..+. ...++|++++|
T Consensus 277 ~~~~~~~~~~Df~~~~~l~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~ll 354 (479)
T PRK09441 277 EQVEGKTDLFDVPLHYNFHEASKQG-RDYDMRNIFDGTLV-EADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALIL 354 (479)
T ss_pred HhcCCCceEecHHHHHHHHHHHhcC-CccchHhhhCcchh-hcCcccceeeeccccCCCcccccccccccchHHHHHHHH
Confidence 532 12467888888888877532 22334443322111 1112223459999999999887652 23579999999
Q ss_pred hCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccH
Q psy15051 892 LLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970 (1065)
Q Consensus 892 tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~ 970 (1065)
|+| |+|+||||+|+|+.+.. +
T Consensus 355 T~p~GiP~IYYGdE~g~~g~~--------~-------------------------------------------------- 376 (479)
T PRK09441 355 LREEGYPCVFYGDYYGASGYY--------I-------------------------------------------------- 376 (479)
T ss_pred hCCCCceeeEeccccCCCCCc--------c--------------------------------------------------
Confidence 999 99999999999987641 0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCC--cEEEEEEECCCC-cEEEEcCC
Q psy15051 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS--TSVYLIINLNSR-TETVDLSD 1040 (1065)
Q Consensus 971 ~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~--~~vlVv~N~s~~-~~~v~l~~ 1040 (1065)
..++++++|+|++|||++ +.|++..+..++++++|.|..++ +.++||+|.+.. .++++++.
T Consensus 377 ------~~~l~~~i~~Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~ 440 (479)
T PRK09441 377 ------DMPFKEKLDKLLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGE 440 (479)
T ss_pred ------cchHHHHHHHHHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCc
Confidence 024789999999999986 47999888888899999998653 578988888653 44477753
No 24
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=3.8e-41 Score=406.62 Aligned_cols=291 Identities=26% Similarity=0.421 Sum_probs=205.8
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccce
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWI 105 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~ 105 (1065)
+||+++|||||+|+||+|++++|.|||+||++|||||+ +|||| ++|++ |++.++..+|||
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~-~LGv~---------------~i~L~-Pi~~~~~~~~gY--- 60 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLK-WLGVD---------------ALWLL-PFFQSPLRDDGY--- 60 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHH-HCCCC---------------EEEEC-CCcCCCCCCCCC---
Confidence 59999999999999999999999999999999999999 99999 66666 777777778999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ .
T Consensus 61 -----~~~dy-------~~vd~~~Gt~~df~~Lv~~ah~~Gi~vi--------lD~-------V~NH~s----------~ 103 (539)
T TIGR02456 61 -----DVSDY-------RAILPEFGTIDDFKDFVDEAHARGMRVI--------IDL-------VLNHTS----------D 103 (539)
T ss_pred -----Ccccc-------cccChhhCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccCcCC----------C
Confidence 66666 667779999999999997 799999999 888 999976 7
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcc--cccccccccCCcch--hhhc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEK--YWGDILERTVSSNS--LQAL 260 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~ 260 (1065)
+|+||++...+ ++ ++.+.||..... + .++.+. ...+ ...++| ....
T Consensus 104 ~~~~f~~~~~~-------------~~--~~~~~~~~~~~~----------~-~~~~~~~~~~~~----~~~~~w~~~~~~ 153 (539)
T TIGR02456 104 QHPWFQEARSN-------------PD--GPYRDFYVWSDT----------D-EKYKDTRIIFVD----TEKSNWTFDPVA 153 (539)
T ss_pred CCHHHHHHhhC-------------CC--CCCCceEEecCC----------C-cccccccccccc----cCCCCccccCCc
Confidence 78888764221 00 111222210000 0 000000 0000 000001 0112
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 261 QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 261 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
+.+| +|.|. ..+||||+.||+|| ++
T Consensus 154 ~~~y---------~~~f~-------------------~~~pdln~~np~vr---------------------------~~ 178 (539)
T TIGR02456 154 KQYY---------WHRFF-------------------SHQPDLNYDNPAVH---------------------------DA 178 (539)
T ss_pred CeeE---------Eeccc-------------------CCCCccCCCCHHHH---------------------------HH
Confidence 3344 88888 79999999999997 88
Q ss_pred HHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCcc
Q psy15051 341 LLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQS 419 (1065)
Q Consensus 341 ~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~ 419 (1065)
|+++++||++.||||||||||++|+|..+ . -|.+.|++++|+++||+.+.+ +|+..
T Consensus 179 l~~~~~~w~~~GvDGfRlDav~~~~~~~~------------~-----------~~~~~p~~~~f~~~~~~~v~~~~p~~~ 235 (539)
T TIGR02456 179 VHDVMRFWLDLGVDGFRLDAVPYLYEREG------------T-----------SCENLPETHEFLKRLRKMVDREYPGRM 235 (539)
T ss_pred HHHHHHHHHHcCCCEEEEecHHhhhccCC------------C-----------ccCCCchHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999999999988432 1 156789999999999998875 59999
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHH---HHHhcCcCCcccc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSH---FIYCGIVDDTSAL 486 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~---~Wq~~m~~~~~~~ 486 (1065)
++||......+.. .|+|. ..+.++++.|+|++.... .+. .++...+....++
T Consensus 236 ~iaE~~~~~~~~~-------~y~~~--------~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~ 300 (539)
T TIGR02456 236 LLAEANQWPEEVV-------AYFGD--------EGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIPDSCQWC 300 (539)
T ss_pred EEEEeCCCHHHHH-------HhhCC--------CCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhccCCCcee
Confidence 9999743322211 22221 112268899999986422 111 2333444555666
Q ss_pred hhhcccCccc
Q psy15051 487 MVMNERRLST 496 (1065)
Q Consensus 487 ~~~~nhd~~r 496 (1065)
+++.|||.+|
T Consensus 301 ~fl~nHD~~~ 310 (539)
T TIGR02456 301 IFLRNHDELT 310 (539)
T ss_pred eecCCCCccC
Confidence 7789999976
No 25
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.2e-38 Score=399.67 Aligned_cols=387 Identities=20% Similarity=0.283 Sum_probs=243.6
Q ss_pred cccceEEEEecccccCcCCC------CCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-------
Q psy15051 557 WKNTVIYQILVPSFKDSNND------GIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP------- 623 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d------~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~------- 623 (1065)
++++||||+|+|+|+...+. ..|+|+ ||+++|+|||+|||||||||||+++.
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~---------------gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~ 513 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFA---------------AFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKN 513 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHH---------------HHHHhHHHHHHcCCCEEEEcCcccccccccccc
Confidence 57899999999999943221 247777 99999999999999999999998631
Q ss_pred ------------CCCCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhh
Q psy15051 624 ------------NGDIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAI 683 (1065)
Q Consensus 624 ------------~~~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~ 683 (1065)
..+|||++.+||+|+++||+ ++|||+||++|
T Consensus 514 ~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~al----------------------------- 564 (1111)
T TIGR02102 514 KERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEI----------------------------- 564 (1111)
T ss_pred ccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHH-----------------------------
Confidence 12499999999999999998 58999999999
Q ss_pred ccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCC
Q psy15051 684 CADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLN 763 (1065)
Q Consensus 684 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~d 763 (1065)
|++||+||||+|+||++..+. |... .+.||++... +
T Consensus 565 ------------------------------------H~~GI~VILDVVyNHt~~~~~-f~~~------~p~Yy~~~~~-~ 600 (1111)
T TIGR02102 565 ------------------------------------HKRGMGVILDVVYNHTAKVYI-FEDL------EPNYYHFMDA-D 600 (1111)
T ss_pred ------------------------------------HHCCCEEEEeccccccccccc-cccc------CCCceEeeCC-C
Confidence 777777888888888877654 2221 2345554332 3
Q ss_pred CCCCCCCCCCcc--ccCCCHHHHHHHHHH--------------------------------HHhcCCceEEEeecCCCC-
Q psy15051 764 GKPGTPPNNWKH--INITSREVMRSQKDV--------------------------------VQSFPLILMIITEAYSPS- 808 (1065)
Q Consensus 764 G~p~~~~~~W~~--ln~~n~~v~~~l~~~--------------------------------lk~~~~~~~ligE~~~~~- 808 (1065)
|.+ .++|.. ++..+++||++|.++ +++..|+++|+||.|...
T Consensus 601 G~~---~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liGE~W~~~~ 677 (1111)
T TIGR02102 601 GTP---RTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIGEGWRTYA 677 (1111)
T ss_pred CCc---ccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEEecccccC
Confidence 432 122322 788888888888887 233466899999999751
Q ss_pred -hHHH-hhhccCCCC--ccccccccHHHHHHhhcCCC-----------hHHHHHHHHHHhhc---C--CCCCcccccccC
Q psy15051 809 -LEKV-AKYYGTGDT--QGTHLSVNYEIMNKFGATSN-----------AKDLENVVNAYLKS---L--PSGKWSSWMVGG 868 (1065)
Q Consensus 809 -~~~~-~~y~~~~~~--~~~d~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~~~~---~--~~~~~~~~flen 868 (1065)
.... ......... ......|+..+++++++... ...+.......... + ......++|+++
T Consensus 678 g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~a 757 (1111)
T TIGR02102 678 GDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAA 757 (1111)
T ss_pred CCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCcccEEEEEec
Confidence 1000 000000000 11235788888888864211 11222222222211 1 122334569999
Q ss_pred CChhhHhhhcC----------H------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCc--cccccccccc
Q psy15051 869 HSITRIATRYS----------P------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDP--EGYIFGKDNY 930 (1065)
Q Consensus 869 HD~~Rl~s~~~----------~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp--~~~~~~~~~~ 930 (1065)
||+.++..++. . +|.|++++++|+++|+||||+|||++.+..... +.+.-| +.+...++.
T Consensus 758 HDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnn-n~y~~~~~~~~~~~~~~- 835 (1111)
T TIGR02102 758 HDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRN-PDYRTPVSEDKVPNKST- 835 (1111)
T ss_pred CCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCc-ccccccccccccccccc-
Confidence 99999866542 1 267888899999999999999999999876310 000000 000000000
Q ss_pred cccccC-----------------CCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHh
Q psy15051 931 LKVCRD-----------------GSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRAT 993 (1065)
Q Consensus 931 ~~~~rd-----------------~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~ 993 (1065)
....++ ..-..++|+...+. .. ......+++++|.||+|||+
T Consensus 836 ~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~---------------~~------~~~~~~~~~y~~~LI~lRk~ 894 (1111)
T TIGR02102 836 LMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDA---------------DA------YPINNKTRDYTAGLIELRRS 894 (1111)
T ss_pred cccccccccccccccccccccCCCccceecccccccc---------------cc------cchhHHHHHHHHHHHHHHhc
Confidence 000011 11223334332100 00 00113689999999999999
Q ss_pred cccccCCCe-------EEEcc--------CCcEEEEEEEcC-CcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCC
Q psy15051 994 SGAVRMGDY-------KISTP--------NNYVFILTRTEG-STSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNS 1057 (1065)
Q Consensus 994 ~paL~~G~~-------~~l~~--------~~~viaf~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~ 1057 (1065)
+|+|+.++. .++.. .+.+++|..... ++.++|++|.+.++++++|+........++++++...+
T Consensus 895 ~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~~~~ 974 (1111)
T TIGR02102 895 TDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDAEQA 974 (1111)
T ss_pred CccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCcccccceEEEEccccc
Confidence 999987664 23222 146889987633 36799999999999999999743334466777775443
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.5e-38 Score=396.44 Aligned_cols=350 Identities=18% Similarity=0.268 Sum_probs=231.9
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
+.++|||+|+++|+. .++++ +++++ |||||+||||+||||||++++. ++|||++++||
T Consensus 746 ~p~~IYEvHvgsf~~-----~~~~~---------------~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ 805 (1224)
T PRK14705 746 SPMSVYEVHLGSWRL-----GLGYR---------------ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYF 805 (1224)
T ss_pred CCcEEEEEEeccccc-----CCchH---------------HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccC
Confidence 568999999999976 36788 88888 6999999999999999999875 46999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++||
T Consensus 806 ap~~ryGt~~dfk~lVd~~H------------------------------------------------------------ 825 (1224)
T PRK14705 806 APTSRFGHPDEFRFLVDSLH------------------------------------------------------------ 825 (1224)
T ss_pred CcCcccCCHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999995
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH---
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV--- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~--- 790 (1065)
++||+||||+|+||++.+. |+....++.. +|...+...|. ...|+. +|+.+++|+++|.++
T Consensus 826 -----~~GI~VILD~V~nH~~~d~-~~l~~fdg~~----~y~~~d~~~g~----~~~Wg~~~fn~~~~eVr~fli~~a~~ 891 (1224)
T PRK14705 826 -----QAGIGVLLDWVPAHFPKDS-WALAQFDGQP----LYEHADPALGE----HPDWGTLIFDFGRTEVRNFLVANALY 891 (1224)
T ss_pred -----HCCCEEEEEeccccCCcch-hhhhhcCCCc----ccccCCcccCC----CCCCCCceecCCCHHHHHHHHHHHHH
Confidence 4455555555555554332 2221111110 11111110111 122333 444444444444444
Q ss_pred -----------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhcc
Q psy15051 791 -----------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYYG 817 (1065)
Q Consensus 791 -----------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~ 817 (1065)
|++..|++++|||.+...+........
T Consensus 892 Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~ 971 (1224)
T PRK14705 892 WLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSH 971 (1224)
T ss_pred HHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccC
Confidence 555567899999998876665554443
Q ss_pred CCCCccccccccHHHHHHhhcCCChHHH------HHHHHHHhhcCCCCCcccccccCCChh-----hHhhhcCHH-----
Q psy15051 818 TGDTQGTHLSVNYEIMNKFGATSNAKDL------ENVVNAYLKSLPSGKWSSWMVGGHSIT-----RIATRYSPD----- 881 (1065)
Q Consensus 818 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l------~~~l~~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~~----- 881 (1065)
. ..|||+.++..+++....-.....+ .+........+.. .+. +..|||+. .+..+..++
T Consensus 972 G--GlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~~e-~fv--l~~SHDevvhgk~sl~~km~Gd~~~k~ 1046 (1224)
T PRK14705 972 G--GLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAFTE-NFL--LPISHDEVVHGKGSMLRKMPGDRWQQL 1046 (1224)
T ss_pred C--CccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHhhc-CEe--cccccccccccchhHHHhCCCcHHHHH
Confidence 3 3789999998888843211111101 0011111111111 122 45689973 344555432
Q ss_pred -HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC
Q psy15051 882 -LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP 960 (1065)
Q Consensus 882 -~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~ 960 (1065)
.+|++++++|+.||+||||||+|+|..... + ....++|.....
T Consensus 1047 a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew---~----------------------~~~~LdW~ll~~----------- 1090 (1224)
T PRK14705 1047 ANLRAFLAYQWAHPGKQLIFMGTEFGQEAEW---S----------------------EQHGLDWFLADI----------- 1090 (1224)
T ss_pred HHHHHHHHHHHhcCCcCEEECccccCCCCCc---c----------------------ccccCCCcccCC-----------
Confidence 467888999999999999999999998753 1 224577775321
Q ss_pred CCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcC-CcEEEEEEECCC
Q psy15051 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEG-STSVYLIINLNS 1031 (1065)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~-~~~vlVv~N~s~ 1031 (1065)
...+.+..++|+|++||+++|+|..++ ++++.. +++|++|.|..+ ++.+|||+||++
T Consensus 1091 --------------~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp 1156 (1224)
T PRK14705 1091 --------------PAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG 1156 (1224)
T ss_pred --------------hhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC
Confidence 123568899999999999999996544 566643 457999999953 457999999999
Q ss_pred CcEE---EEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1032 RTET---VDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1032 ~~~~---v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.++. +.++ .+|.++.+++|+...++
T Consensus 1157 ~~~~~y~igvp----~~G~y~eilnsd~~~yg 1184 (1224)
T PRK14705 1157 GPHKGYTLGVP----AAGAWTEVLNTDHETYG 1184 (1224)
T ss_pred CCccCceECCC----CCCeEEEEEeCchhhcC
Confidence 7766 4344 35899999998877654
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.8e-38 Score=356.96 Aligned_cols=247 Identities=34% Similarity=0.614 Sum_probs=188.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCH 677 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~ 677 (1065)
||++||||||+||||+|||+||++++..+|||++.||++|||+|||++|||+||++|
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~----------------------- 61 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAA----------------------- 61 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHH-----------------------
T ss_pred HHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhcc-----------------------
Confidence 999999999999999999999999987789999999999999999999999999999
Q ss_pred hhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcce
Q psy15051 678 MYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYY 756 (1065)
Q Consensus 678 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y 756 (1065)
|++||+||+|+|+||++..|+||..... ...++.+||
T Consensus 62 ------------------------------------------h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 99 (316)
T PF00128_consen 62 ------------------------------------------HKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYY 99 (316)
T ss_dssp ------------------------------------------HHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTB
T ss_pred ------------------------------------------ccccceEEEeeeccccccccccccccccccccccccce
Confidence 9999999999999999999999988765 355689999
Q ss_pred eecCC---CCCC-C-CCCCCCCc------------c---ccCCCHHHHHHHHHHHHh-----------------------
Q psy15051 757 VWKDG---LNGK-P-GTPPNNWK------------H---INITSREVMRSQKDVVQS----------------------- 793 (1065)
Q Consensus 757 ~~~~~---~dG~-p-~~~~~~W~------------~---ln~~n~~v~~~l~~~lk~----------------------- 793 (1065)
.|... .++. . ......|. . ||+.|++||++|+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~~~~~ 179 (316)
T PF00128_consen 100 YWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAKHIPKEFWK 179 (316)
T ss_dssp EEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGGGSSHHHHH
T ss_pred eecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhceEeEEEEccccccchhhHH
Confidence 98643 1110 0 00111121 1 999999999999998332
Q ss_pred --------cCCceEEEeecCCCChHHHhhhccCCCCccccccccHHH---HHHhh-----cCCChHHHHHHHHHHhhcCC
Q psy15051 794 --------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI---MNKFG-----ATSNAKDLENVVNAYLKSLP 857 (1065)
Q Consensus 794 --------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~---~~~~~-----~~~~~~~l~~~l~~~~~~~~ 857 (1065)
..++++++||.+.........+..... ......+++.. ...+. +......+...+.......+
T Consensus 180 ~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (316)
T PF00128_consen 180 EFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGY-FDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP 258 (316)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGT-TSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST
T ss_pred HHhhhhhhhccccceeeeeccCCccccchhhhccc-cccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhhc
Confidence 224799999999986543332221110 11222222222 22111 23346777778887777777
Q ss_pred CCCcccccccCCChhhHhhhcCHH--HHHHHHHHHHhCCCeEEEEcccccCccCC
Q psy15051 858 SGKWSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAVTFAGDELGMESP 910 (1065)
Q Consensus 858 ~~~~~~~flenHD~~Rl~s~~~~~--~~kla~~ll~tlpGiP~IyyGdE~G~~~~ 910 (1065)
.....++|++|||+.|+.+.++.. +++++++++||+||+||||||||+|+.+.
T Consensus 259 ~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 259 DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 766777899999999999999865 58999999999999999999999999986
No 28
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.4e-37 Score=372.95 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=232.2
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDI 631 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~ 631 (1065)
|.+.++++|||+|+++|+. ..+.|+++ |++++ |+|||+||||+||||||++++. .+|||++
T Consensus 390 p~~~~~~vIYElHvg~~~~--e~~~gtf~---------------~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~ 452 (897)
T PLN02960 390 PKVPKSLRIYECHVGISGS--EPKISSFK---------------EFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKV 452 (897)
T ss_pred CCCCCCcEEEEEecccccC--CCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCc
Confidence 4456789999999998864 23568888 99976 9999999999999999999864 4599999
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCc
Q psy15051 632 SNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN 711 (1065)
Q Consensus 632 ~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1065)
++||+|+++|||++|||+||++|
T Consensus 453 ~~yfa~~~~yGtp~dfk~LVd~a--------------------------------------------------------- 475 (897)
T PLN02960 453 TNFFAVSSRFGTPDDFKRLVDEA--------------------------------------------------------- 475 (897)
T ss_pred ccCCCcccccCCHHHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999999999999
Q ss_pred ccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHH
Q psy15051 712 QNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKD 789 (1065)
Q Consensus 712 ~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~ 789 (1065)
|++||+||||+|+||++.++.+.....++. .++|.... ..|. ...|+. +|+.+++|+++|.+
T Consensus 476 --------H~~GI~VILDvV~NH~~~d~~~~L~~FDG~---~~~Yf~~~-~~g~----~~~WG~~~fNy~~~eVr~fLls 539 (897)
T PLN02960 476 --------HGLGLLVFLDIVHSYAAADEMVGLSLFDGS---NDCYFHSG-KRGH----HKRWGTRMFKYGDHEVLHFLLS 539 (897)
T ss_pred --------HHCCCEEEEEecccccCCccccchhhcCCC---ccceeecC-CCCc----cCCCCCcccCCCCHHHHHHHHH
Confidence 777777777777777777653322111121 12333221 1121 234544 67777777777776
Q ss_pred H---------------------------------------------------------HHhcCCceEEEeecCCCChHHH
Q psy15051 790 V---------------------------------------------------------VQSFPLILMIITEAYSPSLEKV 812 (1065)
Q Consensus 790 ~---------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~ 812 (1065)
. |++..|++++|||.....+..+
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt 619 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLC 619 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCcc
Confidence 6 2223358899999887766555
Q ss_pred hhhccCCCCccccccccHHHHHHh----hcCCChHHHHHHHHHHhh-cCCCCCcccccccCCCh-----hhHhhhcCHH-
Q psy15051 813 AKYYGTGDTQGTHLSVNYEIMNKF----GATSNAKDLENVVNAYLK-SLPSGKWSSWMVGGHSI-----TRIATRYSPD- 881 (1065)
Q Consensus 813 ~~y~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-~~~~~~~~~~flenHD~-----~Rl~s~~~~~- 881 (1065)
...... ..|||+.+++.+++.+ ........-...+...+. ......-.+.|.+|||+ .++..++.+.
T Consensus 620 ~P~~~G--GLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~ 697 (897)
T PLN02960 620 EPTSQG--GLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKN 697 (897)
T ss_pred ccCCCC--CCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCch
Confidence 443332 3678887777665432 111100000000110000 00011112349999999 5555554321
Q ss_pred ------------H----HHH--HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCC
Q psy15051 882 ------------L----VDA--MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQ 943 (1065)
Q Consensus 882 ------------~----~kl--a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~ 943 (1065)
| .++ ++++++ .||+||+|||+|+|.... .+..||....+ -.+..++
T Consensus 698 ~~k~~~~~~~~lRa~al~~~~rllt~~~-~Pg~pLlFMG~EFGh~e~----~~~PdP~n~~t-----------f~~s~Ld 761 (897)
T PLN02960 698 KESSPAVKELLLRGVSLHKMIRLITFTL-GGSAYLNFMGNEFGHPER----VEFPRASNNFS-----------FSLANRR 761 (897)
T ss_pred hhhhcccChhhhhhhhHHHHHHHHHHHh-CCCCCEeeCccccCChhh----hhCcCCCCccc-----------cccccCC
Confidence 1 111 234444 489999999999997431 12223320000 0234566
Q ss_pred CCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEE--ccCCcEEEEEEEcCCc
Q psy15051 944 WNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS--TPNNYVFILTRTEGST 1021 (1065)
Q Consensus 944 W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l--~~~~~viaf~R~~~~~ 1021 (1065)
|+-... ...+.+++++|+|++||+++|+|..|..... ..+++|+||.|.
T Consensus 762 W~Ll~~-------------------------~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~---- 812 (897)
T PLN02960 762 WDLLED-------------------------GVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG---- 812 (897)
T ss_pred cccccC-------------------------hhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC----
Confidence 765321 1245699999999999999999976654333 334579999993
Q ss_pred EEEEEEECCCCcE----EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1022 SVYLIINLNSRTE----TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1022 ~vlVv~N~s~~~~----~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.... .+.++ .+|.++++++|+...++
T Consensus 813 ~llvV~NFsp~~~~~~Y~vgvP----~~G~y~eilNSD~~~yG 851 (897)
T PLN02960 813 PLLFAFNFHPTNSYEEYEVGVE----EAGEYELILNTDEVKYG 851 (897)
T ss_pred CeEEEEeCCCCCcCcCceECCC----CCCcEEEEEeCchhhcC
Confidence 5999999997532 23333 35899999998876543
No 29
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=8.2e-35 Score=338.52 Aligned_cols=327 Identities=14% Similarity=0.197 Sum_probs=206.2
Q ss_pred ccceEEEEec-ccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcc
Q psy15051 558 KNTVIYQILV-PSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v-~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~ 636 (1065)
.+.||+|-|- .++.. ..|+++ ||++||||||+||||+|||+|++++.+. |||++.|||.
T Consensus 23 ~~~v~~Q~F~W~~~~~----~gg~~~---------------~i~~kldyL~~LGvtaIWL~P~~~s~s~-hGY~~~D~y~ 82 (428)
T PLN00196 23 AGQVLFQGFNWESWKQ----NGGWYN---------------FLMGKVDDIAAAGITHVWLPPPSHSVSE-QGYMPGRLYD 82 (428)
T ss_pred CCCEEEEeeccCCCCC----CCcCHH---------------HHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCccccCC
Confidence 4468888776 44422 346788 9999999999999999999999998764 9999999999
Q ss_pred cC-CCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 637 VG-KDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 637 id-p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+| ++|||.+|||+||++|
T Consensus 83 ld~~~fGt~~elk~Lv~~a------------------------------------------------------------- 101 (428)
T PLN00196 83 LDASKYGNEAQLKSLIEAF------------------------------------------------------------- 101 (428)
T ss_pred CCcccCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 99 5999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhh---hc--cCCCCCcceeecCCC------CCCCCCCCCCCc------cccC
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKS---AQ--KIDPYTNYYVWKDGL------NGKPGTPPNNWK------HINI 778 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~---~~--~~~~~~d~y~~~~~~------dG~p~~~~~~W~------~ln~ 778 (1065)
|++||+||+|+|+||++.++.-+... .. ....+.+|+...... ++. . ....|. .||+
T Consensus 102 ----H~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~~~~~~~~~~lpDLn~ 175 (428)
T PLN00196 102 ----HGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGT-G-NLDTGADFAAAPDIDH 175 (428)
T ss_pred ----HHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCC-C-ceeCCCCCCCCCccCC
Confidence 55555555555555555433210000 00 011123332110000 010 0 000011 1999
Q ss_pred CCHHHHHHHHHHHHh-----------------------------cCCceEEEeecCCCC---------------hHHHhh
Q psy15051 779 TSREVMRSQKDVVQS-----------------------------FPLILMIITEAYSPS---------------LEKVAK 814 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~-----------------------------~~~~~~ligE~~~~~---------------~~~~~~ 814 (1065)
.||+|+++|.++++. .. +.+++||.|... ...+..
T Consensus 176 ~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~-p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~ 254 (428)
T PLN00196 176 LNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTE-PSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVN 254 (428)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccC-CcEEEEEEeccccccccCCccccchhhHHHHHH
Confidence 999999999988322 12 478999999751 112223
Q ss_pred hccCCC-CccccccccHHHHHHhhcCCChHHHHHHHH------HHhhcCCCCCcccccccCCChhhHhhhcC--HHHHHH
Q psy15051 815 YYGTGD-TQGTHLSVNYEIMNKFGATSNAKDLENVVN------AYLKSLPSGKWSSWMVGGHSITRIATRYS--PDLVDA 885 (1065)
Q Consensus 815 y~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~flenHD~~Rl~s~~~--~~~~kl 885 (1065)
+++... .....+.|+|.+...+......+ .-..+. ......|...+ +|++|||+.|+.+..+ .++.++
T Consensus 255 ~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~P~~aV--tFvdNHDT~r~~~~~~~~~~~~~l 331 (428)
T PLN00196 255 WVDRVGGAASPATVFDFTTKGILNVAVEGE-LWRLRGADGKAPGVIGWWPAKAV--TFVDNHDTGSTQHMWPFPSDKVMQ 331 (428)
T ss_pred HHHhcCCccCcceeecccchHHHHHHhcCC-chhhhhhcccCcchhhcChhhce--eeccCCCCccccccCCCccchHHH
Confidence 333111 11112234443332111111001 111111 11223343333 4999999999988764 456799
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCc
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNY 965 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~ 965 (1065)
|++++||+||+||||||+=+ +|
T Consensus 332 AyA~iLT~pG~P~IyYg~~~-------------------------------------~~--------------------- 353 (428)
T PLN00196 332 GYAYILTHPGNPCIFYDHFF-------------------------------------DW--------------------- 353 (428)
T ss_pred HHHHHHcCCCcceEeeCCCc-------------------------------------Cc---------------------
Confidence 99999999999999999411 11
Q ss_pred ccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCC
Q psy15051 966 WTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045 (1065)
Q Consensus 966 ~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~ 1045 (1065)
.+.+.+++|+++||++++++.|+++.+..+++++++.| ++.++|.+|..-..-. . .|
T Consensus 354 -------------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~---~~~~~~~i~~~~~~~~----~---~~ 410 (428)
T PLN00196 354 -------------GLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEI---DGKVIVKIGSRYDVSH----L---IP 410 (428)
T ss_pred -------------cHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEE---CCEEEEEECCCCCccc----c---Cc
Confidence 13458999999999999999999999999999999999 3679999998522100 0 13
Q ss_pred CcEEEEEccCC
Q psy15051 1046 GDVAIFTSSVN 1056 (1065)
Q Consensus 1046 ~~~~v~~~s~~ 1056 (1065)
..+++.+++..
T Consensus 411 ~~~~~~~~g~~ 421 (428)
T PLN00196 411 EGFQVVAHGNG 421 (428)
T ss_pred ccceEEEecCC
Confidence 44777777653
No 30
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=9.2e-36 Score=362.64 Aligned_cols=218 Identities=18% Similarity=0.238 Sum_probs=156.2
Q ss_pred cCchhhhcccceEEEecccccCcCCC-----C------------------------------cccccchhhhhhhhHhhh
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNND-----G------------------------------IGDLRGKNVRKRYLELTL 66 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~~-----g------------------------------~Gdl~gi~~kL~yl~~~L 66 (1065)
...|+|++++|||||||+||.+++++ + .|||+||++|||||| +|
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~-~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLK-KL 191 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHH-Hc
Confidence 34578999999999999999987751 1 399999999999999 99
Q ss_pred CCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCC
Q psy15051 67 GLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDS 145 (1065)
Q Consensus 67 Gv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~g 145 (1065)
||| ++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++|
T Consensus 192 Gv~---------------~I~L~-Pif~s~-s~hgY--------d~~Dy-------~~iDp~~Gt~~df~~Lv~~aH~rG 239 (598)
T PRK10785 192 GVT---------------ALYLN-PIFTAP-SVHKY--------DTEDY-------RHVDPQLGGDAALLRLRHATQQRG 239 (598)
T ss_pred CCC---------------EEEeC-CcccCC-CCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCC
Confidence 999 44555 666554 46899 67777 777779999999999997 79999
Q ss_pred CEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCC
Q psy15051 146 LHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGL 225 (1065)
Q Consensus 146 i~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~ 225 (1065)
|||| +|+ |+||++ .+|+||+...... +
T Consensus 240 ikVi--------lD~-------V~NH~~----------~~~~~f~~~~~~~-----------~----------------- 266 (598)
T PRK10785 240 MRLV--------LDG-------VFNHTG----------DSHPWFDRHNRGT-----------G----------------- 266 (598)
T ss_pred CEEE--------EEE-------CCCcCC----------CCCHHHHHhhccc-----------c-----------------
Confidence 9999 776 777754 5566665421000 0
Q ss_pred CCCCCCCCCCCCCCCccc-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15051 226 PSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCA 304 (1065)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln 304 (1065)
.....-..|+.++| |.+.. . | .+ |..+ ..+||||
T Consensus 267 ----ga~~~~~spy~dwf~~~~~~-------------~-~------~~-w~g~--------------------~~lPdLN 301 (598)
T PRK10785 267 ----GACHHPDSPWRDWYSFSDDG-------------R-A------LD-WLGY--------------------ASLPKLD 301 (598)
T ss_pred ----ccccCCCCCcceeeEECCCC-------------C-c------CC-cCCC--------------------CcCcccc
Confidence 00000112344444 22100 0 0 00 1111 4799999
Q ss_pred CCCCcccccccccccCCCCCccccccchhhhHHHHHHHH----HHHHHHHc--CCCeeeecCccccccCCCCCCCCCCCc
Q psy15051 305 VPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC----ILEFWLKR--GVDGFGMDSVLKLYEHESFANEPRLPE 378 (1065)
Q Consensus 305 ~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~Wl~~--GvDGfRlDav~~l~~~~~~~d~p~~~~ 378 (1065)
+.||+|+ ++|++ +++||++. ||||||||+|+++.+...
T Consensus 302 ~~np~v~---------------------------~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~--------- 345 (598)
T PRK10785 302 FQSEEVV---------------------------NEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGG--------- 345 (598)
T ss_pred CCCHHHH---------------------------HHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccC---------
Confidence 9999997 77884 89999986 999999999999875321
Q ss_pred CCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCCCCCC
Q psy15051 379 AAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSADRQPS 425 (1065)
Q Consensus 379 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~~~~~ 425 (1065)
....++|++++|+.+.+ .|+..++||..
T Consensus 346 -------------------~~~~~~f~~~~~~~vk~~~pd~~ligE~~ 374 (598)
T PRK10785 346 -------------------ARNNLQHVAGITQAAKEENPEAYVLGEHF 374 (598)
T ss_pred -------------------ccccHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 01236999999998865 49999999974
No 31
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.7e-34 Score=352.95 Aligned_cols=394 Identities=16% Similarity=0.183 Sum_probs=246.2
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCC-----------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPN----------- 624 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~----------- 624 (1065)
+.++||||+|+|.|+..+.+.....+ |+|.++|.- ...++.|+|||+||||||+|||++++.+
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~R-----GtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~ 411 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFR-----GGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCV 411 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCC-----CcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCccccccccccc
Confidence 46889999999999976543222333 666655431 1124557778888999999999998632
Q ss_pred ---------------------------CCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeeccccccc
Q psy15051 625 ---------------------------GDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNR 670 (1065)
Q Consensus 625 ---------------------------~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~ 670 (1065)
.+|||+|.+|++++++|+| +.|||+||++|
T Consensus 412 ~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~l---------------- 475 (970)
T PLN02877 412 DPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQAL---------------- 475 (970)
T ss_pred ccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHH----------------
Confidence 5699999999999999998 46899999999
Q ss_pred ccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCC
Q psy15051 671 SHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKID 750 (1065)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~ 750 (1065)
|++||+||||+|+||++..++|+..+.- +.
T Consensus 476 -------------------------------------------------H~~GI~VImDVVyNHt~~~g~~~~~s~l-d~ 505 (970)
T PLN02877 476 -------------------------------------------------NRIGLRVVLDVVYNHLHSSGPFDENSVL-DK 505 (970)
T ss_pred -------------------------------------------------HHCCCEEEEEECCccccCCCCcchhhcc-cC
Confidence 8888899999999999988887644321 12
Q ss_pred CCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHH--------------------------------HHhcC---
Q psy15051 751 PYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV--------------------------------VQSFP--- 795 (1065)
Q Consensus 751 ~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~--------------------------------lk~~~--- 795 (1065)
..+.||++.. .+|. .....++...+.+++.|+++|.+. +++..
T Consensus 506 ~vP~YY~r~~-~~G~-~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~ 583 (970)
T PLN02877 506 IVPGYYLRRN-SDGF-IENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLER 583 (970)
T ss_pred CCCCceEEEC-CCCC-cccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhh
Confidence 2346776553 3554 222222333777889999999887 22232
Q ss_pred -----CceEEEeecCCCChH-HHhhhccCCCC--ccc-cccccHHHHHHhhcCCCh------------------------
Q psy15051 796 -----LILMIITEAYSPSLE-KVAKYYGTGDT--QGT-HLSVNYEIMNKFGATSNA------------------------ 842 (1065)
Q Consensus 796 -----~~~~ligE~~~~~~~-~~~~y~~~~~~--~~~-d~~~~~~~~~~~~~~~~~------------------------ 842 (1065)
+.++|+||.|..... ......+.... .+. -..|+..+++++++....
T Consensus 584 ~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~ 663 (970)
T PLN02877 584 DGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGE 663 (970)
T ss_pred cccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccc
Confidence 468999999975211 00000000000 011 235788888887642100
Q ss_pred HH-------HHHHHHHH----hhc------------------CC--------CCCcccccccCCChhhHhhhcC------
Q psy15051 843 KD-------LENVVNAY----LKS------------------LP--------SGKWSSWMVGGHSITRIATRYS------ 879 (1065)
Q Consensus 843 ~~-------l~~~l~~~----~~~------------------~~--------~~~~~~~flenHD~~Rl~s~~~------ 879 (1065)
.. ....+..- +.. +. ...-.++|+++||+..+.+++.
T Consensus 664 ~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~ 743 (970)
T PLN02877 664 DVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPME 743 (970)
T ss_pred hhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCC
Confidence 00 01111110 000 00 1112346999999988887641
Q ss_pred ---H---HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCC
Q psy15051 880 ---P---DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953 (1065)
Q Consensus 880 ---~---~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs 953 (1065)
. ++.+++++++++++|||+|+.|+|+..+... |.+++|++. .-..++|+... .+|.
T Consensus 744 ~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~-------d~nSYnSgD----------~~N~lDw~~~~-nn~~ 805 (970)
T PLN02877 744 ISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSL-------DRDSYNSGD----------WFNRLDFSYDS-NNWG 805 (970)
T ss_pred CCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCC-------CCCCCcCch----------hhheecccccc-Cccc
Confidence 1 2466889999999999999999999888763 333333332 12456777533 2333
Q ss_pred CCCCCC-CCCCCccc-------ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe-------EEEcc----CCcEEEE
Q psy15051 954 KAKSWL-PVHPNYWT-------LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-------KISTP----NNYVFIL 1014 (1065)
Q Consensus 954 ~~~~wl-~~~~~~~~-------~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~----~~~viaf 1014 (1065)
.+.|-. ....+|.- .+......+-....++||.||+|||++|+|+.++. .++.. .++||+|
T Consensus 806 ~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~ 885 (970)
T PLN02877 806 VGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIVM 885 (970)
T ss_pred cCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEEE
Confidence 331100 00001100 01111112224578899999999999999987653 33332 2489999
Q ss_pred EEEcCC-------------cEEEEEEECCCCcEEEEcCCC
Q psy15051 1015 TRTEGS-------------TSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1015 ~R~~~~-------------~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
.-.++. +.++||+|.+.+.++++++.+
T Consensus 886 ~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~ 925 (970)
T PLN02877 886 SIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPAL 925 (970)
T ss_pred EEcCCCCccccccccccccCcEEEEEcCCCccEEEecccc
Confidence 887531 579999999999999998863
No 32
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4.6e-34 Score=352.44 Aligned_cols=392 Identities=16% Similarity=0.250 Sum_probs=241.2
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCC----------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPN---------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~---------- 624 (1065)
-++++||||+|+|+|+..+.+.... .+|+|.+.+.- ...++.|+|||+||||||+|||||+..+
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~-----~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~ 323 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAE-----LRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVAD 323 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcC-----cCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccc
Confidence 3678899999999998654332211 22555544320 0123457777788999999999998631
Q ss_pred -----------------------------------------------------CCCCCcCCCCcccCCCCCC-------H
Q psy15051 625 -----------------------------------------------------GDIGYDISNHTEVGKDFGT-------M 644 (1065)
Q Consensus 625 -----------------------------------------------------~~~GY~~~dy~~idp~~Gt-------~ 644 (1065)
.+|||+|.+|++++++|++ +
T Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri 403 (898)
T TIGR02103 324 IQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARI 403 (898)
T ss_pred cccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHH
Confidence 2599999999999999987 4
Q ss_pred HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCc
Q psy15051 645 EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGM 724 (1065)
Q Consensus 645 edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi 724 (1065)
+|||+||++| |++||
T Consensus 404 ~Efk~mV~al-----------------------------------------------------------------H~~Gi 418 (898)
T TIGR02103 404 KEFREMVQAL-----------------------------------------------------------------NKTGL 418 (898)
T ss_pred HHHHHHHHHH-----------------------------------------------------------------HHCCC
Confidence 7999999999 88888
Q ss_pred EEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHH--------------
Q psy15051 725 KILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV-------------- 790 (1065)
Q Consensus 725 ~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~-------------- 790 (1065)
+||||+|+|||+..++.+.....+ ..+.||+... .+|. .....+|..++.++++|+++|.+.
T Consensus 419 ~VIlDVVyNHt~~~g~~~~s~ld~--~~P~YY~r~~-~~G~-~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFR 494 (898)
T TIGR02103 419 NVVMDVVYNHTNASGPNDRSVLDK--IVPGYYHRLN-EDGG-VENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFR 494 (898)
T ss_pred EEEEEeecccccccCccCcccccc--cCcHhhEeeC-CCCC-eecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 888888889998877665433322 1234554332 2343 222334545888899999998887
Q ss_pred ------------------HHhcCCceEEEeecCCCCh-HHHhhhccCCCC--ccc-cccccHHHHHHhhcCC--Ch----
Q psy15051 791 ------------------VQSFPLILMIITEAYSPSL-EKVAKYYGTGDT--QGT-HLSVNYEIMNKFGATS--NA---- 842 (1065)
Q Consensus 791 ------------------lk~~~~~~~ligE~~~~~~-~~~~~y~~~~~~--~~~-d~~~~~~~~~~~~~~~--~~---- 842 (1065)
+++..|+++++||.|.... .....+.+.... .+. -..|+..+++++++.. +.
T Consensus 495 fDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~ 574 (898)
T TIGR02103 495 FDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDAL 574 (898)
T ss_pred EechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCcccccccc
Confidence 3345679999999997521 111111111110 011 1357788888876421 11
Q ss_pred --------------H-----------H---HHHHHHHHhh-cC----------------------------CCCCccccc
Q psy15051 843 --------------K-----------D---LENVVNAYLK-SL----------------------------PSGKWSSWM 865 (1065)
Q Consensus 843 --------------~-----------~---l~~~l~~~~~-~~----------------------------~~~~~~~~f 865 (1065)
. . ....+..-+. .+ ....-.++|
T Consensus 575 ~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inY 654 (898)
T TIGR02103 575 RQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINY 654 (898)
T ss_pred ccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheee
Confidence 0 0 0011111000 00 011123469
Q ss_pred ccCCChhhHhhhcC---------H---HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccccc
Q psy15051 866 VGGHSITRIATRYS---------P---DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKV 933 (1065)
Q Consensus 866 lenHD~~Rl~s~~~---------~---~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~ 933 (1065)
++.||+.++.+++. . ++.+++++++++++|||+|++|+|+..+... |.++++++.
T Consensus 655 vs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~-------~~nSY~sgD------ 721 (898)
T TIGR02103 655 VSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSF-------DRDSYDSGD------ 721 (898)
T ss_pred eeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCC-------CCCCCcCch------
Confidence 99999988877641 1 2346889999999999999999999888763 333333321
Q ss_pred ccCCCCCcCCCCcccccCCCCC--------CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe---
Q psy15051 934 CRDGSRVPFQWNDQENAGFSKA--------KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY--- 1002 (1065)
Q Consensus 934 ~rd~~R~~m~W~~~~~~gFs~~--------~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~--- 1002 (1065)
.-..++|+...+ +|..+ ..|--..+--...+......+-..+.++||.||+||+++|+|+.++.
T Consensus 722 ----~~N~vdw~~~~~-~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I 796 (898)
T TIGR02103 722 ----WFNRVDFSGQDN-NWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEV 796 (898)
T ss_pred ----hhheeccccccc-ccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHH
Confidence 123456665332 22222 11210000000001111111224688999999999999999987653
Q ss_pred ----EEEcc----CCcEEEEEEEcC-----------CcEEEEEEECCCCcEEEEcCC
Q psy15051 1003 ----KISTP----NNYVFILTRTEG-----------STSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1003 ----~~l~~----~~~viaf~R~~~-----------~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
.+... .+++++|.-.++ -+.++||+|.+.+.+++ ++.
T Consensus 797 ~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~ 852 (898)
T TIGR02103 797 MKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPD 852 (898)
T ss_pred HhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEE-ecc
Confidence 33332 158999988753 25799999999999887 654
No 33
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1.1e-33 Score=342.50 Aligned_cols=362 Identities=17% Similarity=0.232 Sum_probs=227.7
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHH-hhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGII-EKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~-~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
++++|||+|++.|+. ....|+++ +++ ++|+|||+||||+||||||++++. .+|||+++|||
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~---------------~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~f 290 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYR---------------EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFF 290 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCc
Confidence 568999999998853 22357777 765 569999999999999999999875 56999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++|
T Consensus 291 a~~~~~Gtp~dlk~LVd~a------------------------------------------------------------- 309 (758)
T PLN02447 291 AVSSRSGTPEDLKYLIDKA------------------------------------------------------------- 309 (758)
T ss_pred ccccccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH---
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV--- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~--- 790 (1065)
|++||+||||+|+||++.++..-....++ ....||. .+..|. ...|.. +|+.+++|+++|.+.
T Consensus 310 ----H~~GI~VilDvV~nH~~~~~~~gl~~fDg--~~~~Yf~--~~~~g~----~~~w~~~~~N~~~~eVr~fLl~~~~~ 377 (758)
T PLN02447 310 ----HSLGLRVLMDVVHSHASKNTLDGLNGFDG--TDGSYFH--SGPRGY----HWLWDSRLFNYGNWEVLRFLLSNLRW 377 (758)
T ss_pred ----HHCCCEEEEEeccccccccccccccccCC--CCccccc--cCCCCC----cCcCCCceecCCCHHHHHHHHHHHHH
Confidence 55555566666666665433100000000 1112222 111111 122333 666666666666665
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
|++..|++++|||.....|......
T Consensus 378 Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~ 457 (758)
T PLN02447 378 WLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPV 457 (758)
T ss_pred HHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccC
Confidence 3334568999999988766655554
Q ss_pred ccCCCCccccccccHHHHHHh----hc-CCChHHHHHHHHHHhh-cCCCCCcccccccCCChhhH---------h-----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKF----GA-TSNAKDLENVVNAYLK-SLPSGKWSSWMVGGHSITRI---------A----- 875 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~-~~~~~~~~~~flenHD~~Rl---------~----- 875 (1065)
...| .|||+.++..+++.+ +. ....-.+..+...... .+... .+.|.+|||+... .
T Consensus 458 ~~GG--lGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~--~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 458 QEGG--VGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEK--CVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred CCCc--CCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCc--eEeccCCcCeeecCcchhHhhhcchhhh
Confidence 4332 678888877766643 22 1111112222222222 12222 2248899999443 2
Q ss_pred hhcCH--------HH----HHHHHHHHHhCCCe-EEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcC
Q psy15051 876 TRYSP--------DL----VDAMNMLTLLLPGT-AVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942 (1065)
Q Consensus 876 s~~~~--------~~----~kla~~ll~tlpGi-P~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m 942 (1065)
..... .| .|++.+++|++||. +|+|||+|+|.... +++...+ +... ......
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew-~Dfpr~~-----n~ws---------~~~~~~ 598 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEW-IDFPREG-----NGWS---------YDKCRR 598 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchh-ccCcccc-----cccC---------cccccC
Confidence 11111 11 25566889999999 79999999999742 1111000 0000 012335
Q ss_pred CCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc---cCCcEEEEEEEcC
Q psy15051 943 QWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST---PNNYVFILTRTEG 1019 (1065)
Q Consensus 943 ~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~---~~~~viaf~R~~~ 1019 (1065)
+|+-... +....+.+.+|+|+|++|++++|+|..| +.++. .+++|+||.|.
T Consensus 599 ~W~L~d~-----------------------~~l~~~~l~~f~~~L~~l~~~~~~L~~~-~~~i~~~d~~~~Viaf~R~-- 652 (758)
T PLN02447 599 RWDLADA-----------------------DHLRYKFLNAFDRAMMHLDEKYGFLTSE-HQYVSRKDEGDKVIVFERG-- 652 (758)
T ss_pred CccccCC-----------------------CchhhhHHHHHHHHHHHHHhcCccccCC-CceeeeecCCCCEEEEEeC--
Confidence 5654210 0012356889999999999999999755 44443 35689999995
Q ss_pred CcEEEEEEECCCC----cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1020 STSVYLIINLNSR----TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1020 ~~~vlVv~N~s~~----~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.. ...|.++ .+|.++++++|+...++
T Consensus 653 --~ll~V~NF~p~~s~~~Y~igvp----~~G~y~~ilnSD~~~fG 691 (758)
T PLN02447 653 --DLVFVFNFHPTNSYSDYRVGCD----KPGKYKIVLDSDAWEFG 691 (758)
T ss_pred --CeEEEEeCCCCCCCCCcEECCC----CCCeEEEEECCCchhcC
Confidence 39999999973 2334444 46999999999887664
No 34
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=9.1e-33 Score=322.19 Aligned_cols=374 Identities=14% Similarity=0.175 Sum_probs=275.9
Q ss_pred ccceEEEEecccccCcCCCC-CCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC---------CCCCC
Q psy15051 558 KNTVIYQILVPSFKDSNNDG-IGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG---------PNGDI 627 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~-~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~---------~~~~~ 627 (1065)
.-.|.+.++|.++....+.. .+.| |-....+||++|||++|||+|++++ +..+.
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L----------------~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~ 113 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEAL----------------ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDG 113 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHh----------------cChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCC
Confidence 34578899999997533221 1222 4456679999999999999999999 88889
Q ss_pred CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 628 GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 628 GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
||++.| +.|||.|||++||++|+++|
T Consensus 114 gyDi~d-~~Idp~~GT~eDf~~L~~~A----------------------------------------------------- 139 (688)
T TIGR02455 114 NFDRIS-FDIDPLLGSEEELIQLSRMA----------------------------------------------------- 139 (688)
T ss_pred CCCccc-CccCcccCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999 59999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcce-----------eecCCCCC------------
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY-----------VWKDGLNG------------ 764 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y-----------~~~~~~dG------------ 764 (1065)
|++||+||+|+|+||||..|+ |+.+..+.++|++|| +|.+...+
T Consensus 140 ------------h~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~ 206 (688)
T TIGR02455 140 ------------AAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCD 206 (688)
T ss_pred ------------HHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHH
Confidence 999999999999999999999 888877799999999 88776544
Q ss_pred ---------C---------CCCCCCCCcc--------------------------ccCCCHH--HHHHHH-HHHHh----
Q psy15051 765 ---------K---------PGTPPNNWKH--------------------------INITSRE--VMRSQK-DVVQS---- 793 (1065)
Q Consensus 765 ---------~---------p~~~~~~W~~--------------------------ln~~n~~--v~~~l~-~~lk~---- 793 (1065)
. |....++|.. |||.||. +++.|. ++++.
T Consensus 207 ~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~l 286 (688)
T TIGR02455 207 ELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDCL 286 (688)
T ss_pred HHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHHh
Confidence 1 2222346643 9999999 999999 66221
Q ss_pred ------------------------------------------cCCceEEEeecCCCChHHHhhhccCCCCccccccccHH
Q psy15051 794 ------------------------------------------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYE 831 (1065)
Q Consensus 794 ------------------------------------------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~ 831 (1065)
-+++.++++|.... ++.+..|++. ++|+.|+|.
T Consensus 287 G~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~-~~d~~~~~g~----~~dl~~dF~ 361 (688)
T TIGR02455 287 GARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT-IDDIAAMSHG----GADLSYDFI 361 (688)
T ss_pred ccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC-HHHHHHHhCC----Ccceeeccc
Confidence 12378899998887 8888888873 688888887
Q ss_pred HHHHhh---cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHh---------------------------------
Q psy15051 832 IMNKFG---ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIA--------------------------------- 875 (1065)
Q Consensus 832 ~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~--------------------------------- 875 (1065)
.+..+. ...++.-+...++.....--+......|+.|||+-.+-
T Consensus 362 t~p~~~~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m 441 (688)
T TIGR02455 362 TRPAYHHALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEI 441 (688)
T ss_pred ccHHHHHHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHH
Confidence 766542 34577778877777654331444444599999981110
Q ss_pred -hh----------------------------cC-----------HHHHHHHHHHHHh----CCCeEEEEcc---------
Q psy15051 876 -TR----------------------------YS-----------PDLVDAMNMLTLL----LPGTAVTFAG--------- 902 (1065)
Q Consensus 876 -s~----------------------------~~-----------~~~~kla~~ll~t----lpGiP~IyyG--------- 902 (1065)
.+ .| .++.+++.+++++ +||+|+||||
T Consensus 442 ~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~ 521 (688)
T TIGR02455 442 YERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLA 521 (688)
T ss_pred HHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeeccccccccccc
Confidence 00 01 1256777888888 9999999999
Q ss_pred -----cccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCC-----C----CCCCCC-Cccc
Q psy15051 903 -----DELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-----S----WLPVHP-NYWT 967 (1065)
Q Consensus 903 -----dE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~-----~----wl~~~~-~~~~ 967 (1065)
+|+||.... |- .++||+... . .+|... -|.
T Consensus 522 ~~~v~deigmGD~~--------------------------------wl--~rggfs~~~~~p~~~~s~~~lP~~~~~Yg- 566 (688)
T TIGR02455 522 AEAVAELMGDGDTR--------------------------------WI--HRGGYDLADLAPEAEASAEGLPKARALYG- 566 (688)
T ss_pred ccchhhhhccCccc--------------------------------cc--cCCCcccCCCCchhhhccCCCCCCcCCCC-
Confidence 777766431 11 134444331 1 334322 344
Q ss_pred ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc-CCcEEEEEEEc--CCcEEEEEEECCCCcEEEEcCCCccC
Q psy15051 968 LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP-NNYVFILTRTE--GSTSVYLIINLNSRTETVDLSDCIEN 1044 (1065)
Q Consensus 968 ~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~-~~~viaf~R~~--~~~~vlVv~N~s~~~~~v~l~~~~~~ 1044 (1065)
|++.|...+.|+++.+|+|+++||+++++..|.+..+.. ++.|+++.|.. ++..+|+|.|||.+++.+.|....-.
T Consensus 567 -nv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~ 645 (688)
T TIGR02455 567 -SLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA 645 (688)
T ss_pred -CHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC
Confidence 899999999999999999999999999999999988776 45899999983 34789999999998777666432223
Q ss_pred CCcEEEEEccC
Q psy15051 1045 GGDVAIFTSSV 1055 (1065)
Q Consensus 1045 ~~~~~v~~~s~ 1055 (1065)
++.+..++++.
T Consensus 646 ~~~~~dl~~~~ 656 (688)
T TIGR02455 646 PGPVVDIIHES 656 (688)
T ss_pred CCCceeccCCC
Confidence 44555555544
No 35
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=345.38 Aligned_cols=300 Identities=22% Similarity=0.291 Sum_probs=203.0
Q ss_pred cceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 31 TVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 31 ~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
+|||||+|+||.++++ +|+|||+||+++||||+ +|||+ ++|++ |++.+++.+|||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~-~LGv~---------------aiwl~-Pi~~s~~~~~gY-- 61 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLK-ELGVD---------------AIWLS-PIFESPQADHGY-- 61 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHH-HhCCC---------------EEEeC-CCCCCCccCCCc--
Confidence 5899999999999999 99999999999999999 99999 56666 888888899999
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| +.|||.|||++||++|++ +|++||+|| +|+ |+||++
T Consensus 62 ------~~~Dy-------~~id~~~Gt~~d~~~li~~~H~~gi~vi--------~D~-------V~NH~s---------- 103 (505)
T COG0366 62 ------DVSDY-------TKVDPHFGTEEDFKELVEEAHKRGIKVI--------LDL-------VFNHTS---------- 103 (505)
T ss_pred ------cccch-------hhcCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccCcCC----------
Confidence 67766 677778999999999997 699999999 887 899977
Q ss_pred CccccccCCCccee-----ccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhh
Q psy15051 184 GQNFLFQGRPVNLM-----SYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQ 258 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~-----~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1065)
.+|.||+....... +|+.|+..+. +...+.++ ...++++.|..
T Consensus 104 ~~~~~f~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~~----------------------~~~~~~~~~~~-------- 151 (505)
T COG0366 104 DEHPWFKEARSSKPNPKRSDYYIWRDPDP--DGTPPNNW----------------------FSVFGGDAWTW-------- 151 (505)
T ss_pred CccHHHHHHhcCCCCcccCCCceEccCcc--cCCCCCcc----------------------hhhcCCCCCCc--------
Confidence 88888877543221 2222211111 00000000 00011111100
Q ss_pred hccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHH
Q psy15051 259 ALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEI 338 (1065)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1065)
+....+++|.|. ..|||||+.||+||
T Consensus 152 --------~~~~~~~~~~~~-------------------~~~~dln~~n~~v~--------------------------- 177 (505)
T COG0366 152 --------GNTGEYYLHLFS-------------------SEQPDLNWENPEVR--------------------------- 177 (505)
T ss_pred --------CCCCceEEEecC-------------------CCCCCcCCCCHHHH---------------------------
Confidence 112334499999 89999999999997
Q ss_pred HHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CC
Q psy15051 339 TLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GN 417 (1065)
Q Consensus 339 ~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~ 417 (1065)
+++.++++||+++||||||+||++++.+..... +. .....+.++.++.++....-+-.+ ..
T Consensus 178 ~~~~~~~~~W~~~gvDGfRlDa~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
T COG0366 178 EELLDVVKFWLDKGVDGFRLDAAKHISKDFGLP--PS----------------EENLTFLEEIHEYLREENPDVLIYGEA 239 (505)
T ss_pred HHHHHHHHHHHHcCCCeEEeccHhhhccccCCC--Cc----------------ccccccHHHHHHHHHHHHHHHHhcCcc
Confidence 789999999999999999999999999965433 10 011335556666666664422222 12
Q ss_pred ccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------------HHHHHHhcCc-CC
Q psy15051 418 QSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------------VSHFIYCGIV-DD 482 (1065)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------------~~~~Wq~~m~-~~ 482 (1065)
...+++......+. . ... ....+.+++|.|+|.+..+. ++..|+..+. ..
T Consensus 240 ~~~~~~~~~~~~~~---~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
T COG0366 240 ITDVGEAPGAVKED---F-----------ADN-TSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLND 304 (505)
T ss_pred eeeeeccccccchh---h-----------hhc-cchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhcccc
Confidence 22222222111110 0 000 12233566777777766431 6688888886 45
Q ss_pred cccchhhcccCccccchhhhhhhh
Q psy15051 483 TSALMVMNERRLSTIASRTMAAMS 506 (1065)
Q Consensus 483 ~~~~~~~~nhd~~r~~sr~~~~~s 506 (1065)
.+.+.+..|||++|..+|++.+..
T Consensus 305 ~~~~~~~~~hD~~r~~~~~~~~~~ 328 (505)
T COG0366 305 GWNNLFLSNHDQPRLLSRFGDDVG 328 (505)
T ss_pred CchhhhhhhcCccceeeeccCCcc
Confidence 666667899999999999987654
No 36
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=342.77 Aligned_cols=343 Identities=14% Similarity=0.146 Sum_probs=198.1
Q ss_pred cCchhhhcccceEEEecccccCcCC----------CC--------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcce
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNN----------DG--------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIY 83 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~----------~g--------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~ 83 (1065)
.+.+.||+++|||||+||||.++++ ++ .|||+||++||+||+ +||||+||++|..++...+
T Consensus 181 ~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~-~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQ-QLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHH-HcCCCEEEeCccccccccc
Confidence 3457899999999999999998872 22 299999999999999 9999988888877753211
Q ss_pred ee--ecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccc
Q psy15051 84 IS--FWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDI 160 (1065)
Q Consensus 84 ~~--~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~ 160 (1065)
+. ...+.| ...+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 260 ~~~g~~g~~~----~~~yhgY--------~~~D~-------~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi--------lD~ 312 (683)
T PRK09505 260 VGGGTKGDFP----HYAYHGY--------YTLDW-------TKLDANMGTEADLRTLVDEAHQRGIRIL--------FDV 312 (683)
T ss_pred cccccccCCC----cCCCCCC--------Ccccc-------ccCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE
Confidence 00 000001 1367898 66666 777789999999999997 799999999 998
Q ss_pred ccccccCCCCCccccccCcccccCccccccCCCc---ceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy15051 161 ESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV---NLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEG 237 (1065)
Q Consensus 161 ~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1065)
|+||++..+.. ..++.+|+..-. ..........-+|.+......|++. . .... ++.
T Consensus 313 -------V~NH~~~~~~~----d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~--------~~~~-~~~ 371 (683)
T PRK09505 313 -------VMNHTGYATLA----DMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFN-D--------YINF-SDS 371 (683)
T ss_pred -------CcCCCcccccc----cccccchhhhhhhccccccccCcccccccccccccccccc-c--------cccc-CCc
Confidence 99998622221 234556655210 0000000011122211111111110 0 0000 112
Q ss_pred CCCcccccccccccCCcchh-----------hhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q psy15051 238 PSSEKYWGDILERTVSSNSL-----------QALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAV- 305 (1065)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~- 305 (1065)
+..+.+|+..|.++.-.+.. ..+..+. .+......++.|. ..+||+|+
T Consensus 372 ~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~-te~~~~~~lp~f~-------------------~~~p~~~~~ 431 (683)
T PRK09505 372 TAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK-TESTQASGLPVFY-------------------ANKPDTRAK 431 (683)
T ss_pred cccccccccccccccccccccccccccccccccCCccc-ccCccccccchhh-------------------hcCcccccc
Confidence 22334454444221100000 0000000 0111233355555 57788876
Q ss_pred --CCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCC
Q psy15051 306 --PNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGR 382 (1065)
Q Consensus 306 --~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~ 382 (1065)
+||+|+ ++|+++++||++ .||||||||||+||-++-
T Consensus 432 ~~~n~~Vr---------------------------~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~F-------------- 470 (683)
T PRK09505 432 AIDGYTPR---------------------------DYLTHWLSQWVRDYGIDGFRVDTAKHVELPA-------------- 470 (683)
T ss_pred cccCHHHH---------------------------HHHHHHHHHHHHhcCCCEEEEechHhCCHHH--------------
Confidence 678886 889999999997 699999999999995420
Q ss_pred CCCCCCCccccccCCchhHHHHHHHHHHHHHh----hCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccc
Q psy15051 383 PDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK----FGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAE 458 (1065)
Q Consensus 383 ~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~ 458 (1065)
...-..++++.+++||++-.+ .++..++||........ ..++ + +.+
T Consensus 471 -----------W~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~---------------~~y~-~---~~f 520 (683)
T PRK09505 471 -----------WQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK---------------SDYY-R---HGF 520 (683)
T ss_pred -----------HHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhh---------------HHHH-h---hcC
Confidence 011245667888888865332 13467888875322211 0111 1 346
Q ss_pred cccccchhhhHH---------HHHHHHhcCcC-Ccccch-hhcccCccccchhhhhh
Q psy15051 459 SMEHRADLLHQV---------VSHFIYCGIVD-DTSALM-VMNERRLSTIASRTMAA 504 (1065)
Q Consensus 459 ~~~~~f~l~~~~---------~~~~Wq~~m~~-~~~~~~-~~~nhd~~r~~sr~~~~ 504 (1065)
++++||++.... +...++..... .....+ ++.|||++|..++..+.
T Consensus 521 Dsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~~~~ 577 (683)
T PRK09505 521 DAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGGQSY 577 (683)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhcCch
Confidence 788999866332 12223222211 112222 56999999999988654
No 37
>PLN02361 alpha-amylase
Probab=100.00 E-value=4.4e-32 Score=312.06 Aligned_cols=299 Identities=13% Similarity=0.153 Sum_probs=189.7
Q ss_pred cccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccc
Q psy15051 596 GLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLY 675 (1065)
Q Consensus 596 ~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~ 675 (1065)
+++|+++|+||++||||+|||+|++++.+. |||++.|||.+|++|||.+||++||++||++||+||+|+|+||
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~-~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH------ 100 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPSQSLAP-EGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH------ 100 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCcCCCC-CCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc------
Confidence 359999999999999999999999998765 9999999999999999999999999999666666666666643
Q ss_pred cchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCch----hhHhhhccCCC
Q psy15051 676 CHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD----WFIKSAQKIDP 751 (1065)
Q Consensus 676 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~----wf~~~~~~~~~ 751 (1065)
++.... ++... .+.+
T Consensus 101 -----------------------------------------------------------~~g~~~~~~~~y~~~-~g~~- 119 (401)
T PLN02361 101 -----------------------------------------------------------RVGTTQGHGGMYNRY-DGIP- 119 (401)
T ss_pred -----------------------------------------------------------ccCCCCCCCCCcccC-CCCc-
Confidence 321100 00000 0000
Q ss_pred CCcce---eec--------CCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHh-----------------cC--------
Q psy15051 752 YTNYY---VWK--------DGLNGKPGTPPNNWKHINITSREVMRSQKDVVQS-----------------FP-------- 795 (1065)
Q Consensus 752 ~~d~y---~~~--------~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~lk~-----------------~~-------- 795 (1065)
.+|. +.. ...+..+..+. ||+.||+|+++++++++. +.
T Consensus 120 -~~wd~~~~~~~~~g~~~~~~~~~~~~lpD-----Ld~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~ 193 (401)
T PLN02361 120 -LPWDEHAVTSCTGGLGNRSTGDNFNGVPN-----IDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYI 193 (401)
T ss_pred -CCCCccccccccCCCCCccCCCCCccCCc-----cCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 0000 000 00000101111 999999999999988432 11
Q ss_pred ---CceEEEeecCCCCh----------------HHHhhhccCC--CCccccccccHHHHHHhhcCCChHHHHHHHHH---
Q psy15051 796 ---LILMIITEAYSPSL----------------EKVAKYYGTG--DTQGTHLSVNYEIMNKFGATSNAKDLENVVNA--- 851 (1065)
Q Consensus 796 ---~~~~ligE~~~~~~----------------~~~~~y~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~--- 851 (1065)
.+.+++||.|.... ..+..++... ....||+++...+.+++. .++.+....
T Consensus 194 ~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~-----~~~~~l~~~~~~ 268 (401)
T PLN02361 194 EAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVK-----GQWWRLRDAQGK 268 (401)
T ss_pred HhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHh-----hhHHHHhhhhcC
Confidence 14789999997621 1233444421 123455555555555552 122222111
Q ss_pred ---HhhcCCCCCcccccccCCChhhHhhhcC--HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccc
Q psy15051 852 ---YLKSLPSGKWSSWMVGGHSITRIATRYS--PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFG 926 (1065)
Q Consensus 852 ---~~~~~~~~~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~ 926 (1065)
.....|.. .+.|++|||+.|+.+..+ .++.++|++++||.||+|+||||+=+
T Consensus 269 ~~~~~~~~p~~--aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~--------------------- 325 (401)
T PLN02361 269 PPGVMGWWPSR--AVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFY--------------------- 325 (401)
T ss_pred CcchhhcChhh--ceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeecccc---------------------
Confidence 11112222 234999999999988654 45678889999999999999998611
Q ss_pred cccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc
Q psy15051 927 KDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006 (1065)
Q Consensus 927 ~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~ 1006 (1065)
+|+ .++.+.+++|++|||++++++.|+++.+.
T Consensus 326 ----------------~~~--------------------------------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~ 357 (401)
T PLN02361 326 ----------------DWG--------------------------------GSIHDQIVKLIDIRKRQDIHSRSSIRILE 357 (401)
T ss_pred ----------------CCC--------------------------------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 011 13678999999999999999999999999
Q ss_pred cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1007 ~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
.++++++-.-. ++++|=++.. .....+..+++.+++..
T Consensus 358 a~~~~y~a~i~---~~~~~k~g~~---------~~~p~~~~~~~~~~g~~ 395 (401)
T PLN02361 358 AQSNLYSAIID---EKLCMKIGDG---------SWCPSGREWTLATSGHR 395 (401)
T ss_pred ecCCeEEEEEC---CeEEEEecCC---------CCCCCCCCceEEEecCc
Confidence 88877765542 2344444332 11111235777777654
No 38
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.98 E-value=9.8e-32 Score=318.10 Aligned_cols=359 Identities=20% Similarity=0.267 Sum_probs=231.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
-|+..+|||+|+.+|+. + ...|+++ +.+++|+|||+||||||+||||.+++. .+|||+++.|
T Consensus 141 ~~e~~vIYElHvGs~~~-~-~~~~~~e---------------~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~ 203 (628)
T COG0296 141 FWEPIVIYELHVGSFTP-D-RFLGYFE---------------LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGY 203 (628)
T ss_pred CCCCceEEEEEeeeccC-C-CCcCHHH---------------HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCccee
Confidence 37799999999999987 2 4456666 889999999999999999999999974 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|++..+|||++|||+||++|
T Consensus 204 yAp~sryGtPedfk~fVD~a------------------------------------------------------------ 223 (628)
T COG0296 204 YAPTSRYGTPEDFKALVDAA------------------------------------------------------------ 223 (628)
T ss_pred ccccccCCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH--
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV-- 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~-- 790 (1065)
|++||.||||+|+||.+.+...+...- + ..+|-..+...|. .+.|+. .++..++||++|.+.
T Consensus 224 -----H~~GIgViLD~V~~HF~~d~~~L~~fd-g----~~~~e~~~~~~~~----~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 224 -----HQAGIGVILDWVPNHFPPDGNYLARFD-G----TFLYEHEDPRRGE----HTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred -----HHcCCEEEEEecCCcCCCCcchhhhcC-C----ccccccCCccccc----CCCcccchhccCcHHHHHHHHHHHH
Confidence 888888888899999987655443311 0 0111111111222 345666 555588899888887
Q ss_pred ------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhc
Q psy15051 791 ------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYY 816 (1065)
Q Consensus 791 ------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~ 816 (1065)
|+...|..+.|+|.|...+.....-.
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~ 369 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVA 369 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeec
Confidence 11123367889999988665444433
Q ss_pred cCCCCccccccccHHHHH-HhhcCCChHHHHHHHHHHhhcCC---CCCcccccccCCChh-----hHhhhc------CHH
Q psy15051 817 GTGDTQGTHLSVNYEIMN-KFGATSNAKDLENVVNAYLKSLP---SGKWSSWMVGGHSIT-----RIATRY------SPD 881 (1065)
Q Consensus 817 ~~~~~~~~d~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~flenHD~~-----Rl~s~~------~~~ 881 (1065)
.+| .++++..++..+. .+..-......++.-.... .+. ..+-...+..|||+. .+..++ ...
T Consensus 370 ~gG--~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~-tf~~~y~~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a 446 (628)
T COG0296 370 IGG--LGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGEL-TFGLLYAFSENVVLPLSHDEVVHGKRSLGERMPGDAWQKFA 446 (628)
T ss_pred ccc--cchhhhhhhhhHhhHHHhcccCccccccccCCC-ccccccccceeEeccccccceeecccchhccCCcchhhhHH
Confidence 332 4567777766333 2211100000111000000 000 011122388999995 233333 123
Q ss_pred HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCC
Q psy15051 882 LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPV 961 (1065)
Q Consensus 882 ~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~ 961 (1065)
.+|++++++++.||+|+||||+|+|+..+...+. ..+|.....+
T Consensus 447 ~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~-------------------------~~~w~~L~~~----------- 490 (628)
T COG0296 447 NLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFS-------------------------SLDWLLLDQA----------- 490 (628)
T ss_pred HHHHHHHHHHhCCCceeeecchhhccCCCCcccC-------------------------CCChhhhhhc-----------
Confidence 6788899999999999999999999998752222 2233221100
Q ss_pred CCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-----CeEEEccC---CcEEEEEEE---cCCcEEEEEEECC
Q psy15051 962 HPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-----DYKISTPN---NYVFILTRT---EGSTSVYLIINLN 1030 (1065)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-----~~~~l~~~---~~viaf~R~---~~~~~vlVv~N~s 1030 (1065)
......+.+..+.+.|.++-+..+++..- .+.++..+ ++|++|.|. .+.+.++++.|++
T Consensus 491 ----------~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~ 560 (628)
T COG0296 491 ----------VREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFT 560 (628)
T ss_pred ----------cccchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCC
Confidence 00011245677888888888888887543 34555542 369999995 3455577888877
Q ss_pred CCcE-EEEcCCCccCCCcEEEEEccCC
Q psy15051 1031 SRTE-TVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1031 ~~~~-~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
.... ...+.-. ..+.++.++.++.
T Consensus 561 ~~~~~~y~~~~~--~~g~~~~~lntd~ 585 (628)
T COG0296 561 PVPRVDYRVGVP--VAGRWREVLNTDL 585 (628)
T ss_pred CCcccccccCCc--ccccEEEeccchH
Confidence 6443 2333321 4577888877643
No 39
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.97 E-value=1.5e-32 Score=308.85 Aligned_cols=259 Identities=21% Similarity=0.303 Sum_probs=169.9
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|||+||++|||||| +|||+ ++|++ |+++++..+||| ++.+| ++|||+|
T Consensus 1 Gd~~gi~~kLdyl~-~lGv~---------------~I~l~-Pi~~~~~~~~gY--------~~~d~-------~~vd~~~ 48 (316)
T PF00128_consen 1 GDFRGIIDKLDYLK-DLGVN---------------AIWLS-PIFESPNGYHGY--------DPSDY-------YAVDPRF 48 (316)
T ss_dssp SSHHHHHHTHHHHH-HHTES---------------EEEES-S-EESSSSTTTT--------SESEE-------EEESTTT
T ss_pred CCHHHHHHhhHHHH-HcCCC---------------ceecc-cccccccccccc--------cceee-------ecccccc
Confidence 89999999999999 99999 66666 777777788999 55555 5666699
Q ss_pred CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccC
Q psy15051 130 FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKH 208 (1065)
Q Consensus 130 Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v 208 (1065)
||++||++||+ ||++||+|| +|+ |+||++ ..|+||+......
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~Vi--------lD~-------V~NH~~----------~~~~~~~~~~~~~------------ 91 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVI--------LDV-------VPNHTS----------DDHPWFQDSLNYF------------ 91 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEE--------EEE-------ETSEEE----------TTSHHHHHHHTHT------------
T ss_pred chhhhhhhhhhccccccceEE--------Eee-------eccccc----------ccccccccccccc------------
Confidence 99999999998 699999999 887 888866 6666765421110
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhc--cccCCCCCCCCccccccccCCCCCC
Q psy15051 209 PPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQAL--QRVYPPPHHSMTLPHQYSMSMPPRH 285 (1065)
Q Consensus 209 ~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~ 285 (1065)
..++.++| |.+. ....++++.... ..+....... .+.+.
T Consensus 92 ---------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------- 133 (316)
T PF00128_consen 92 ---------------------------DNPYSDYYYWRDG-EGSPPGNWYSYFGGSNWEYDDWGD---EYQFW------- 133 (316)
T ss_dssp ---------------------------TSTTGTTBEEESB-TSTTSSTBBCSTTTSSEESCHHTH---CHSSS-------
T ss_pred ---------------------------ccccccceeeccc-cccccccccccccccccccccccc---ccccc-------
Confidence 00111111 2111 000011110000 0000000000 02333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccc
Q psy15051 286 SMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLY 365 (1065)
Q Consensus 286 ~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~ 365 (1065)
..+||||++||+|| ++|+++++||+++||||||+|+|+++.
T Consensus 134 ------------~~~~dln~~n~~v~---------------------------~~i~~~~~~w~~~giDGfR~D~~~~~~ 174 (316)
T PF00128_consen 134 ------------SDLPDLNYENPEVR---------------------------EYIIDVLKFWIEEGIDGFRLDAAKHIP 174 (316)
T ss_dssp ------------TTSEEBETTSHHHH---------------------------HHHHHHHHHHHHTTESEEEETTGGGSS
T ss_pred ------------cccchhhhhhhhhh---------------------------hhhcccccchhhceEeEEEEccccccc
Confidence 68999999999997 889999999999999999999999996
Q ss_pred cCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCC
Q psy15051 366 EHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGS 444 (1065)
Q Consensus 366 ~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (1065)
+ +++++|++.+.+. |+..++||......+........ .++
T Consensus 175 ~------------------------------------~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~-~~~-- 215 (316)
T PF00128_consen 175 K------------------------------------EFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYD-GYF-- 215 (316)
T ss_dssp H------------------------------------HHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHH-GTT--
T ss_pred h------------------------------------hhHHHHhhhhhhhccccceeeeeccCCccccchhhhc-ccc--
Confidence 5 8888998877665 89999999866554321111000 000
Q ss_pred CCcccccCCCcccccccccchh--------------------hhHHHHHHHHhcCcCCcccchhhcccCccccchhhhhh
Q psy15051 445 GNQNWRAGNQNRAESMEHRADL--------------------LHQVVSHFIYCGIVDDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 445 ~~~~~~~g~~~~e~~~~~~f~l--------------------~~~~~~~~Wq~~m~~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...+.++|.. +.. .+..|+...+......++.+|||++|..++++..
T Consensus 216 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~ 282 (316)
T PF00128_consen 216 ------------DLDSVFDFPDYGLRSSFFDFWRHGDGDASDLAN-WLSSWQSSYPDPYRAVNFLENHDTPRFASRFGNN 282 (316)
T ss_dssp ------------SHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHH-HHHHHHHHSTTGGGEEEESSHTTSSTHHHHTTTH
T ss_pred ------------ccchhhcccccccccchhhhhccccchhhhhhh-hhhhhhhhhcccceeeecccccccccchhhhccc
Confidence 0011122221 111 6677888887766777777999999999999987
Q ss_pred hh
Q psy15051 505 MS 506 (1065)
Q Consensus 505 ~s 506 (1065)
..
T Consensus 283 ~~ 284 (316)
T PF00128_consen 283 RD 284 (316)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 40
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-30 Score=312.02 Aligned_cols=352 Identities=21% Similarity=0.280 Sum_probs=229.7
Q ss_pred cccceEEEEecccccCcCCCC----CCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCC-------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDG----IGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGP------- 623 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~----~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~------- 623 (1065)
|.++||||+|+|.|+..+++- .|++. |+++. |+|||+||||||+||||+...
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~---------------gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~ 233 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYL---------------GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDK 233 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhcccee---------------hhccccHHHHHHHhCCceEEEecceEEeccccccc
Confidence 899999999999999633321 25555 88888 999999999999999999863
Q ss_pred ---CCCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 624 ---NGDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 624 ---~~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
.++|||+|.+||+++++|.+ ..|||.||+++
T Consensus 234 ~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~l--------------------------------------- 274 (697)
T COG1523 234 SGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKAL--------------------------------------- 274 (697)
T ss_pred cccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHH---------------------------------------
Confidence 35799999999999999953 56999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh-hhccCCCCCcceeecCCCCCCCCCCCCC
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK-SAQKIDPYTNYYVWKDGLNGKPGTPPNN 772 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~-~~~~~~~~~d~y~~~~~~dG~p~~~~~~ 772 (1065)
|++||.||||||+|||+........ ..++ --+.+|++... +|. ....++
T Consensus 275 --------------------------HkaGI~VILDVVfNHTae~~~~g~t~~f~~--id~~~Yyr~~~-dg~-~~N~TG 324 (697)
T COG1523 275 --------------------------HKAGIEVILDVVFNHTAEGNELGPTLSFRG--IDPNYYYRLDP-DGY-YSNGTG 324 (697)
T ss_pred --------------------------HHcCCEEEEEEeccCcccccCcCccccccc--CCcCceEEECC-CCC-eecCCc
Confidence 8888888888888999742111110 1111 12356665554 355 222233
Q ss_pred Ccc-ccCCCHHHHHHHHHHHHh----c----------------------CC-------------ceEEEeecCCCChHHH
Q psy15051 773 WKH-INITSREVMRSQKDVVQS----F----------------------PL-------------ILMIITEAYSPSLEKV 812 (1065)
Q Consensus 773 W~~-ln~~n~~v~~~l~~~lk~----~----------------------~~-------------~~~ligE~~~~~~~~~ 812 (1065)
.+. +|.++|.||+.+.|.|+- + .+ ...+|||.|+..+.
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kliAepwD~g~~-- 402 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKLIAEPWDIGPG-- 402 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCceeeecchhhcCC--
Confidence 332 999999999999998432 0 11 34467777753210
Q ss_pred hhhccCCCC------ccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC--
Q psy15051 813 AKYYGTGDT------QGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS-- 879 (1065)
Q Consensus 813 ~~y~~~~~~------~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~-- 879 (1065)
.| +-|.- ...+-.|+...+..+.+ ......+.+.+......+. .....++|+.+||..++.+.+.
T Consensus 403 -gy-qvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~ 480 (697)
T COG1523 403 -GY-QVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYN 480 (697)
T ss_pred -Cc-ccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhc
Confidence 11 11100 11122333333333333 2344555555544321221 1233456999999977665531
Q ss_pred -------------------------------------HH-HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcc
Q psy15051 880 -------------------------------------PD-LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPE 921 (1065)
Q Consensus 880 -------------------------------------~~-~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~ 921 (1065)
++ ..+.+++.++++.|+||+-.|+|.|.+...
T Consensus 481 ~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~g---------- 550 (697)
T COG1523 481 HKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQYG---------- 550 (697)
T ss_pred cCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccccccccccc----------
Confidence 01 234556777888999999999999997653
Q ss_pred ccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC
Q psy15051 922 GYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 922 ~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~ 1001 (1065)
+.+.+|.+..-..++|+. .....++++.|.||+|||++|+|+...
T Consensus 551 -------nnNsYcqdn~inwlDW~~----------------------------~~~~~l~~f~~~lIaLRk~~~af~~~~ 595 (697)
T COG1523 551 -------NNNAYCQDNEINWLDWST----------------------------EANNDLVEFTKGLIALRKAHPAFRRRS 595 (697)
T ss_pred -------ccccccCCcccceeccCc----------------------------cccHHHHHHHHHHHHHhhhcchhcccc
Confidence 123455565566777771 123579999999999999999997633
Q ss_pred eEE----------Ec-------------cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCC
Q psy15051 1002 YKI----------ST-------------PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1002 ~~~----------l~-------------~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
+.. +. .....+++......++++|++|...+++.+.++..
T Consensus 596 f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~~~~~~~lp~~ 658 (697)
T COG1523 596 FFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATAEPVEFELPED 658 (697)
T ss_pred hhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCccccceecccc
Confidence 322 21 01245666665557799999999999888888863
No 41
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.96 E-value=2.5e-29 Score=293.61 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=188.6
Q ss_pred cccceEEEecccccCcCCCCcccccch--hhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGK--NVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi--~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
...|.+.+||.|+-...+. .-|.-+ ..-.+||+ +|||+.||++|.+.++++|- | -..|+.+.||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~--s~~~~L~~~~~wdyL~-~LGV~~iwl~P~~~SGgi~g--~-----~~tP~~D~gy---- 115 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGC--SVLEALADDALWKALS-EIGVQGIHNGPIKLSGGIRG--R-----EFTPSIDGNF---- 115 (688)
T ss_pred hcCeeEEecchhhcCCCCC--cHHHHhcChHHHHHHH-HhCCCEEEeCcceecccccc--c-----CCCCCCCCCC----
Confidence 3568899999999644332 223333 33379999 99999666666666655432 1 1237778899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
+|.+ +.|||.|||++||++|++ ||++||+|| +|+ |+|||| .+
T Consensus 116 ----Di~d--------~~Idp~~GT~eDf~~L~~~Ah~~G~~vi--------~Dl-------VpnHTs----------~g 158 (688)
T TIGR02455 116 ----DRIS--------FDIDPLLGSEEELIQLSRMAAAHNAITI--------DDI-------IPAHTG----------KG 158 (688)
T ss_pred ----Cccc--------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------CCCCCC----------CC
Confidence 5666 467779999999999997 799999999 887 999988 88
Q ss_pred cccccCCCcceeccccC--------cccccCCCCCCCCCCCccCCCCCCCCCC-----CC--CCCCCCCCcccccccc--
Q psy15051 186 NFLFQGRPVNLMSYVLG--------RELRKHPPHSTPHLPHVCCPSGLPSTSR-----PD--IEGEGPSSEKYWGDIL-- 248 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~--------~~~d~v~nh~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~-- 248 (1065)
|. |+.+..+..+|-.. ..+.+-|.. +.++.+... .. .+|--++... ...+
T Consensus 159 hd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~----------~~~~~~~~l~~~~~~~L~~~g~i~~~l~--rviF~~ 225 (688)
T TIGR02455 159 AD-FRLAELAHGDYPGLYHMVEIREEDWALLPEV----------PAGRDAVNLLPAQCDELKAKHYIVGQLQ--RVIFFE 225 (688)
T ss_pred cc-hHHHhhcCCCCCCceeeccccccccccCCCC----------CcccccccccHHHHHHHhhccCcccccc--cceecC
Confidence 88 76665545555211 111122111 111000000 00 0000001000 0011
Q ss_pred cccCCcchh----------hhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc--ccccccc
Q psy15051 249 ERTVSSNSL----------QALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPK--VLMVPNA 316 (1065)
Q Consensus 249 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~--v~~~~~~ 316 (1065)
.....++|. +.++.|| +|.|. ..||||||.||. |+
T Consensus 226 pg~e~s~Wt~d~~v~g~dG~~Rrw~Y---------~H~F~-------------------~~QPdLNw~dPs~av~----- 272 (688)
T TIGR02455 226 PGIKDTDWSATGEITGVDGKTRRWVY---------LHYFK-------------------EGQPSLNWLDPTFAAQ----- 272 (688)
T ss_pred CCcccCCceecccccCCCccchhhhh---------hhhcc-------------------CCCCccCccCccHHHH-----
Confidence 122233343 2345566 99998 899999999999 86
Q ss_pred cccCCCCCccccccchhhhHHHHHHH-HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCcccccc
Q psy15051 317 DIAWNPSCQTTVVDCQMFCYEITLLL-CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYT 395 (1065)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~ 395 (1065)
++|+ ++++||++.|++|||+||++||.++++. .|
T Consensus 273 ----------------------~~~~gdal~~w~~lG~~GfRLDAvpfLg~e~~~-----------------------~~ 307 (688)
T TIGR02455 273 ----------------------QLIIGDALHAIDCLGARGLRLDANGFLGVERRA-----------------------EG 307 (688)
T ss_pred ----------------------HHHHHHHHHHHHHhccccceeccccceeeecCC-----------------------CC
Confidence 7899 8999999999999999999999986531 16
Q ss_pred CCchhHHHHHHHHHHHHH---hhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH
Q psy15051 396 IDQPETYEMLYKWRTLVE---KFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV 470 (1065)
Q Consensus 396 ~~~~~~~~~~~~~r~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~ 470 (1065)
...+|+|.+++.+|++++ ++++..+.+|-|++..+--.++ | .++||.|+|...+..
T Consensus 308 ~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~----------------g---~~~dl~~dF~t~p~~ 366 (688)
T TIGR02455 308 TAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMS----------------H---GGADLSYDFITRPAY 366 (688)
T ss_pred CCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHh----------------C---CCcceeecccccHHH
Confidence 677899999999999987 3588899999999888855544 3 278999999866443
No 42
>PLN02784 alpha-amylase
Probab=99.96 E-value=5.3e-28 Score=290.98 Aligned_cols=324 Identities=15% Similarity=0.196 Sum_probs=196.2
Q ss_pred cceEEEEeccccc-CcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCccc
Q psy15051 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEV 637 (1065)
Q Consensus 559 ~~vIYei~v~~F~-d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~i 637 (1065)
....|+|+...|. +...++. -++ ||+++|+||++||||+|||+|++++.+. |||++.|||.+
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~-w~~---------------~I~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~l 560 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGR-WYM---------------ELGEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNL 560 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCc-hHH---------------HHHHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCccccccc
Confidence 4567888888886 4333321 134 9999999999999999999999998765 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhh
Q psy15051 638 GKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAES 717 (1065)
Q Consensus 638 dp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1065)
|++|||.+||++||++||++||+||+|+|+
T Consensus 561 ds~yGT~~ELk~LI~a~H~~GIkVIlDiVi-------------------------------------------------- 590 (894)
T PLN02784 561 NSRYGTIDELKDLVKSFHEVGIKVLGDAVL-------------------------------------------------- 590 (894)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECc--------------------------------------------------
Confidence 999999999999999995555555555555
Q ss_pred hhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---C--CCC----CCCCCCCc---cccCCCHHHHH
Q psy15051 718 MEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---N--GKP----GTPPNNWK---HINITSREVMR 785 (1065)
Q Consensus 718 ~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---d--G~p----~~~~~~W~---~ln~~n~~v~~ 785 (1065)
||++.. |.......+.|..++.|.... + .++ .....+|. .||+.||+||+
T Consensus 591 ---------------NH~ag~---f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 591 ---------------NHRCAH---FQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred ---------------cccccc---ccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHH
Confidence 444321 000000001111111111100 0 000 00000111 19999999999
Q ss_pred HHHHHHHh-----------------cC-----------CceEEEeecCCCC--------------hHHHhhhccCCC--C
Q psy15051 786 SQKDVVQS-----------------FP-----------LILMIITEAYSPS--------------LEKVAKYYGTGD--T 821 (1065)
Q Consensus 786 ~l~~~lk~-----------------~~-----------~~~~ligE~~~~~--------------~~~~~~y~~~~~--~ 821 (1065)
+|.++++. |. ...|++||.|... ...+..|+.... .
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~ 732 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTA 732 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCCCce
Confidence 99998432 11 1479999999861 123455554322 2
Q ss_pred ccccccccHHHHHHhhcCCChHHHHHHHHHH-------hhcCCCCCcccccccCCChhhHhhh--cCHHHHHHHHHHHHh
Q psy15051 822 QGTHLSVNYEIMNKFGATSNAKDLENVVNAY-------LKSLPSGKWSSWMVGGHSITRIATR--YSPDLVDAMNMLTLL 892 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~flenHD~~Rl~s~--~~~~~~kla~~ll~t 892 (1065)
..||+++.+.+..++.. .+.-. +... ....|..++ .|++|||+.+..+. +......++++++||
T Consensus 733 saFDfplk~~L~~A~~~----~e~wr-L~d~~g~~~glv~~~P~~AV--TFVDNHDTg~~Q~~w~~p~~k~~~AYAyILt 805 (894)
T PLN02784 733 GAFDVTTKGILHSALER----CEYWR-LSDQKGKPPGVVGWWPSRAV--TFIENHDTGSTQGHWRFPEGKEMQGYAYILT 805 (894)
T ss_pred eeechhHHHHHHHHHhc----cchhh-hhhccCCCCCeeccccCceE--EEecCCCCCCCcccCCCCccchhhHHHHHHc
Confidence 44666666666665532 11111 1111 111222233 39999999886543 223355668899999
Q ss_pred CCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHH
Q psy15051 893 LPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQA 972 (1065)
Q Consensus 893 lpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~ 972 (1065)
.||+||||||+=+|.
T Consensus 806 hpG~PcVFy~h~y~~----------------------------------------------------------------- 820 (894)
T PLN02784 806 HPGTPAVFYDHIFSH----------------------------------------------------------------- 820 (894)
T ss_pred CCCcceEEehhhhhh-----------------------------------------------------------------
Confidence 999999999875421
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 973 EKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 973 ~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
+.+-+++|+.+||+.-.=.....+++..+.++|+-.-. ++++|-+-... -++ .+.+..+++.+
T Consensus 821 -------~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~---~k~~~kiG~~~-----~~p--~~~~~~~~~~~ 883 (894)
T PLN02784 821 -------YHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIID---EKVAMKIGPGH-----YEP--PNGPQNWSVAL 883 (894)
T ss_pred -------hHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeC---CeeEEEECCcc-----cCC--CCCCCceEEEE
Confidence 11248999999999854456777777777778775543 24444443321 000 01234678877
Q ss_pred ccCC
Q psy15051 1053 SSVN 1056 (1065)
Q Consensus 1053 ~s~~ 1056 (1065)
++..
T Consensus 884 sG~~ 887 (894)
T PLN02784 884 EGQD 887 (894)
T ss_pred ecCC
Confidence 7654
No 43
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.96 E-value=9.4e-28 Score=292.21 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=99.2
Q ss_pred cccCCChhhHhhhcCHH----------HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccc
Q psy15051 865 MVGGHSITRIATRYSPD----------LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934 (1065)
Q Consensus 865 flenHD~~Rl~s~~~~~----------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~ 934 (1065)
.+++||+.|+.+.+... ..+...++.||+||+|+||||+|+++.+. .||+
T Consensus 619 lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~sl-------vDPD------------- 678 (825)
T TIGR02401 619 VLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSL-------VDPD------------- 678 (825)
T ss_pred HcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCC-------CCCC-------------
Confidence 57999999988876533 34555789999999999999999999986 3776
Q ss_pred cCCCCCcCCCCccccc--CCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccC---
Q psy15051 935 RDGSRVPFQWNDQENA--GFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPN--- 1008 (1065)
Q Consensus 935 rd~~R~~m~W~~~~~~--gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~--- 1008 (1065)
||+||+|+..... .... ..+ .............+.++++|++||+++|+| ..|+++.+..+
T Consensus 679 ---NRRpvd~~~r~~~L~~l~~-~~~---------~~l~~~~~dg~~Kl~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~ 745 (825)
T TIGR02401 679 ---NRRPVDYAARRAALLQLTT-PNW---------SELELWLLDGLVKLAVTAAALQLRREHPELFGQGDYQPLEAGGPG 745 (825)
T ss_pred ---ccCCCChHHHHHHHHhhhc-ccc---------hhhhccccccHHHHHHHHHHHHHHHhCHHhhhcCCeEEEeccCCC
Confidence 8999999853311 0000 000 000111123355778999999999999985 89999999764
Q ss_pred -CcEEEEEEEcCCcEEEEEEECCC
Q psy15051 1009 -NYVFILTRTEGSTSVYLIINLNS 1031 (1065)
Q Consensus 1009 -~~viaf~R~~~~~~vlVv~N~s~ 1031 (1065)
++|+||.|..+++.+|||+|...
T Consensus 746 ~~~vvaFaR~~~~~~~vvvv~R~~ 769 (825)
T TIGR02401 746 AAHVIAFARGTDRQAAIVVVTRLS 769 (825)
T ss_pred cCcEEEEEEecCCcEEEEEEecch
Confidence 58999999988889999999864
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.95 E-value=2.8e-27 Score=291.00 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=147.2
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
++..+|||||+++|+++++++.|+|+||+++| |||| +||||+||++ |++.++. ..|||
T Consensus 145 ~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~-~LGv~~i~L~----------------Pi~~~~~~~~~GY--- 204 (633)
T PRK12313 145 DRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVK-EMGYTHVEFM----------------PLMEHPLDGSWGY--- 204 (633)
T ss_pred CCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHH-HcCCCEEEeC----------------chhcCCCCCCCCC---
Confidence 36689999999999998878899999999995 9999 9999944444 5555443 46899
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|+|+|||++|||+||+ ||++||+|| +|+ |+||++
T Consensus 205 -----~~~~y-------~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vi--------lD~-------V~nH~~----------- 246 (633)
T PRK12313 205 -----QLTGY-------FAPTSRYGTPEDFMYLVDALHQNGIGVI--------LDW-------VPGHFP----------- 246 (633)
T ss_pred -----CCcCc-------CcCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC-----------
Confidence 66666 677779999999999997 799999999 777 777764
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccC
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
..+... ..++|.. . +++.+.. ..+
T Consensus 247 -----------------------------~~~~~~-----------~~~~~~~-~--~~~~~~~------------~~~- 270 (633)
T PRK12313 247 -----------------------------KDDDGL-----------AYFDGTP-L--YEYQDPR------------RAE- 270 (633)
T ss_pred -----------------------------CCcccc-----------cccCCCc-c--eeecCCC------------CCc-
Confidence 111100 0000100 0 0000000 000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
...+ ..++||+.||+|| ++|+++
T Consensus 271 ---------~~~w---------------------~~~~~n~~~~~vr---------------------------~~l~~~ 293 (633)
T PRK12313 271 ---------NPDW---------------------GALNFDLGKNEVR---------------------------SFLISS 293 (633)
T ss_pred ---------CCCC---------------------CCcccCCCCHHHH---------------------------HHHHHH
Confidence 0001 2358999999997 789999
Q ss_pred HHHHHHc-CCCeeeecCccccc-cCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCC
Q psy15051 345 LEFWLKR-GVDGFGMDSVLKLY-EHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSAD 421 (1065)
Q Consensus 345 l~~Wl~~-GvDGfRlDav~~l~-~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~ 421 (1065)
++||++. ||||||+|+|+++. ++.+ .+.+..+...| ...+ .+.++|++++++.+.+ +|+..+|
T Consensus 294 ~~~W~~~~~iDG~R~D~~~~~~~~d~~-~~~~~~~~~~~------------~~~~-~~~~~fl~~~~~~v~~~~p~~~li 359 (633)
T PRK12313 294 ALFWLDEYHLDGLRVDAVSNMLYLDYD-EEGEWTPNKYG------------GREN-LEAIYFLQKLNEVVYLEHPDVLMI 359 (633)
T ss_pred HHHHHHHhCCcEEEEcChhhhhhcccc-cccCcCCcccC------------CCCC-cHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999975 99999999998665 4433 32222111110 1223 3789999999987765 5999999
Q ss_pred CCCC
Q psy15051 422 RQPS 425 (1065)
Q Consensus 422 ~~~~ 425 (1065)
+|..
T Consensus 360 aE~~ 363 (633)
T PRK12313 360 AEES 363 (633)
T ss_pred EECC
Confidence 9964
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=3e-25 Score=271.37 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=96.2
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCccccc--CCCCCCCCCCCCC
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENA--GFSKAKSWLPVHP 963 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~--gFs~~~~wl~~~~ 963 (1065)
..++.||+||+|+||||+|+|+.+. .||+ ||+|++|+..... .....
T Consensus 706 q~lLqlT~PGVPdIYqG~E~wd~sl-------vDPD----------------NRRpvd~~~r~~~L~~l~~~-------- 754 (879)
T PRK14511 706 QTLLKLTSPGVPDVYQGTELWDFSL-------VDPD----------------NRRPVDFAARAAALARLDEG-------- 754 (879)
T ss_pred HHHHHHCcCCCCcccCcccchhccC-------CCCC----------------CCCCCChHHHHHHHhhcccc--------
Confidence 3589999999999999999999986 3666 8999999853210 00000
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccC----CcEEEEEEEcCCcEEEEEEECCCC------
Q psy15051 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPN----NYVFILTRTEGSTSVYLIINLNSR------ 1032 (1065)
Q Consensus 964 ~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~----~~viaf~R~~~~~~vlVv~N~s~~------ 1032 (1065)
.......+....+.++++|+++|+++|+| ..|++..+..+ ++++||.|..+++.++||+|....
T Consensus 755 -----~~~~~~~dg~~kl~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~~~~~~vvvv~R~~~~l~~~~ 829 (879)
T PRK14511 755 -----AELLPWDDGRIKLLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGGGGGRALTVAPRLPAGLLGAG 829 (879)
T ss_pred -----cccccCCcchHHHHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEecCCceEEEEeccccccccccC
Confidence 00000112234678999999999999999 57999999864 689999999888999999988653
Q ss_pred ---cEEEEcCCCccCCCcEEEEEccC
Q psy15051 1033 ---TETVDLSDCIENGGDVAIFTSSV 1055 (1065)
Q Consensus 1033 ---~~~v~l~~~~~~~~~~~v~~~s~ 1055 (1065)
..+|.|+.. ..++.++-++++.
T Consensus 830 ~W~dt~v~LP~~-~~~~~w~d~lTG~ 854 (879)
T PRK14511 830 GWGDTRLVLPEI-LSGGRWRDLLTGE 854 (879)
T ss_pred CcCCeEEeCCCc-cCCCceeEeccCC
Confidence 457777741 1345677777654
No 46
>PLN03244 alpha-amylase; Provisional
Probab=99.93 E-value=4.3e-24 Score=253.71 Aligned_cols=304 Identities=16% Similarity=0.230 Sum_probs=184.4
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC
Q psy15051 631 ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG 710 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
+++||+|+++|||++|||+||++|
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~a-------------------------------------------------------- 450 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEA-------------------------------------------------------- 450 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHH--------------------------------------------------------
Confidence 789999999999999999999999
Q ss_pred cccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHH
Q psy15051 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQK 788 (1065)
Q Consensus 711 ~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~ 788 (1065)
|++||+||||+|+||++.+.........+.+ ..||. . +..|. ...|+. +|+.+++|+++|.
T Consensus 451 ---------H~~GI~VILDvV~NH~~~d~~~GL~~fDGt~--~~Yf~-~-~~~g~----~~~WGs~~fnyg~~EVr~FLL 513 (872)
T PLN03244 451 ---------HGLGLLVFLDIVHSYAAADEMVGLSLFDGSN--DCYFH-T-GKRGH----HKHWGTRMFKYGDLDVLHFLI 513 (872)
T ss_pred ---------HHCCCEEEEEecCccCCCccccchhhcCCCc--cceec-c-CCCCc----cCCCCCceecCCCHHHHHHHH
Confidence 6677777777777777765432111111111 01222 1 11122 234554 6777777777777
Q ss_pred HH---------------------------------------------------------HHhcCCceEEEeecCCCChHH
Q psy15051 789 DV---------------------------------------------------------VQSFPLILMIITEAYSPSLEK 811 (1065)
Q Consensus 789 ~~---------------------------------------------------------lk~~~~~~~ligE~~~~~~~~ 811 (1065)
+. |++..|++++|||..+..|..
T Consensus 514 sna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~v 593 (872)
T PLN03244 514 SNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGL 593 (872)
T ss_pred HHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCc
Confidence 66 333456899999998875655
Q ss_pred HhhhccCCCCccccccccHHHHHHh----hc----CCChHHHHHHHHHHhhcCCCCCcccccccCCCh-----hhHhhhc
Q psy15051 812 VAKYYGTGDTQGTHLSVNYEIMNKF----GA----TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSI-----TRIATRY 878 (1065)
Q Consensus 812 ~~~y~~~~~~~~~d~~~~~~~~~~~----~~----~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~-----~Rl~s~~ 878 (1065)
....... ..|||+.++..+++.. +. .++...+...+. ...........|.||||+ .+++..+
T Consensus 594 t~Pv~~G--GLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~---~nrr~~ek~~aYsESHDqaLvGdKTlaf~l 668 (872)
T PLN03244 594 CEPTSQG--GLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI---ANKEYADKMLSYAENHNQSISGGRSFAEIL 668 (872)
T ss_pred cccCCCC--CCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh---cccCCcceEEEEecccceeccccchHHhhh
Confidence 4443332 3678888887755533 21 122222222221 111112233459999999 2233222
Q ss_pred -----------------CHHHHHHHHHHHHhCCCeE-EEEcccccCccCCCCccCCCCCccccccccccccccccCCCCC
Q psy15051 879 -----------------SPDLVDAMNMLTLLLPGTA-VTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRV 940 (1065)
Q Consensus 879 -----------------~~~~~kla~~ll~tlpGiP-~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~ 940 (1065)
+....|++.++++++||.| ++|||+|+|..... +|..-++ ..+.. -.
T Consensus 669 ~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~-dfPr~gN------------~~s~~--~a 733 (872)
T PLN03244 669 FGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERI-EFPMPSN------------NFSFS--LA 733 (872)
T ss_pred cccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchhe-eccccCC------------Ccccc--cc
Confidence 1113466667889999987 79999999997642 1100000 00000 01
Q ss_pred cCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEE--ccCCcEEEEEEEc
Q psy15051 941 PFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS--TPNNYVFILTRTE 1018 (1065)
Q Consensus 941 ~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l--~~~~~viaf~R~~ 1018 (1065)
..+|+-.. ....+.+.+++|+|++|++++++|..|..-.. ..+++|+||.|.
T Consensus 734 rrdW~Lld-------------------------~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~- 787 (872)
T PLN03244 734 NRCWDLLE-------------------------NEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG- 787 (872)
T ss_pred ccCccccC-------------------------ChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-
Confidence 23555321 01135688999999999999999975543222 235679999996
Q ss_pred CCcEEEEEEECCCC----cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1019 GSTSVYLIINLNSR----TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1019 ~~~~vlVv~N~s~~----~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.. ...|.++ .+|.++++++|+...++
T Consensus 788 ---~LLfVfNF~P~~sy~dYrIGVp----~~G~Y~eILNSD~~~FG 826 (872)
T PLN03244 788 ---PFLFIFNFHPSNSYEGYDVGVE----EAGEYQIILNSDETKYG 826 (872)
T ss_pred ---CEEEEEeCCCCCCccCCEECCC----CCCeEEEEEeCChhhhC
Confidence 59999999974 2334444 46999999999887655
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.92 E-value=5.2e-25 Score=269.31 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=141.4
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~v 106 (1065)
+..+|||+++++|+++ |+|+||+++| |||| +||||+||++|. +.++. ..|||
T Consensus 137 ~~~~iYe~hv~~~~~~-----g~~~~i~~~l~dyl~-~LGvt~i~L~Pi----------------~e~~~~~~wGY---- 190 (613)
T TIGR01515 137 KPVSIYELHLGSWRHG-----LSYRELADQLIPYVK-ELGFTHIELLPV----------------AEHPFDGSWGY---- 190 (613)
T ss_pred CCceEEEEehhhccCC-----CCHHHHHHHHHHHHH-HcCCCEEEECCc----------------ccCCCCCCCCC----
Confidence 4579999999999764 9999999996 9999 999995555554 44432 36999
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|+++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 191 ----~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~Vi--------lD~-------V~NH~~------------ 232 (613)
T TIGR01515 191 ----QVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVI--------LDW-------VPGHFP------------ 232 (613)
T ss_pred ----CcccC-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccCcC------------
Confidence 66666 667779999999999997 699999999 776 777764
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCC
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYP 265 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1065)
+.+..+ ..+++. + .++..+.. ...
T Consensus 233 ----------------------------~~~~~~-----------~~~~~~-~--~y~~~~~~------------~~~-- 256 (613)
T TIGR01515 233 ----------------------------KDDHGL-----------AEFDGT-P--LYEHKDPR------------DGE-- 256 (613)
T ss_pred ----------------------------Cccchh-----------hccCCC-c--ceeccCCc------------cCc--
Confidence 111111 000010 0 00000000 000
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL 345 (1065)
Q Consensus 266 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (1065)
+ +. -..++||+.||+|| ++|++++
T Consensus 257 ---------~-----------------~~---w~~~~~~~~~~~Vr---------------------------~~l~~~~ 280 (613)
T TIGR01515 257 ---------H-----------------WD---WGTLIFDYGRPEVR---------------------------NFLVANA 280 (613)
T ss_pred ---------C-----------------CC---CCCceecCCCHHHH---------------------------HHHHHHH
Confidence 0 00 13468999999997 8899999
Q ss_pred HHHHHc-CCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCC
Q psy15051 346 EFWLKR-GVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADR 422 (1065)
Q Consensus 346 ~~Wl~~-GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~ 422 (1065)
+||++. ||||||+|+|++|.. +.+-.+ |....+. ..+...++.++|++++|+.+.+. |+..+|+
T Consensus 281 ~~W~~ey~iDG~R~D~v~~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 281 LYWAEFYHIDGLRVDAVASMLYLDYSRDE--------GEWSPNE-----DGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred HHHHHHhCCcEEEEcCHHHhhhhcccccc--------ccccccc-----cCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 999975 999999999987753 111000 1000010 01445678999999999988765 9999999
Q ss_pred CCC
Q psy15051 423 QPS 425 (1065)
Q Consensus 423 ~~~ 425 (1065)
|..
T Consensus 348 E~~ 350 (613)
T TIGR01515 348 EES 350 (613)
T ss_pred EeC
Confidence 953
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.92 E-value=5.9e-25 Score=262.72 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=81.7
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecc
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNH 109 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~ 109 (1065)
..||.|.|=-..- .+...++||++|||||+ +||||+||++|+.++.. ...+|||. +.||
T Consensus 3 ~~~~~q~f~w~~~----~~~~~~~~I~~kldyl~-~LGvtaIwl~P~~~~~~--------------~~~~hgY~--~~D~ 61 (479)
T PRK09441 3 NGTMMQYFEWYLP----NDGKLWNRLAERAPELA-EAGITAVWLPPAYKGTS--------------GGYDVGYG--VYDL 61 (479)
T ss_pred CceEEEEEEeccC----CCccHHHHHHHHHHHHH-HcCCCEEEeCCCccCCC--------------CCCCCCCC--eecc
Confidence 4567776542221 11246779999999999 99999555555444321 13457885 8888
Q ss_pred cccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcccc
Q psy15051 110 EQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFL 188 (1065)
Q Consensus 110 ~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~ 188 (1065)
+++.+|-++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ -...|+|
T Consensus 62 ~~~~~~~~~----~~id~~fGt~~dl~~Li~~~H~~Gi~vi--------~D~-------V~NH~~--------~~~~~~~ 114 (479)
T PRK09441 62 FDLGEFDQK----GTVRTKYGTKEELLNAIDALHENGIKVY--------ADV-------VLNHKA--------GADEKET 114 (479)
T ss_pred ccccccccc----CCcCcCcCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc--------CCCccee
Confidence 888875111 379999999999999997 699999999 998 999986 1134578
Q ss_pred ccC
Q psy15051 189 FQG 191 (1065)
Q Consensus 189 f~~ 191 (1065)
|+.
T Consensus 115 ~~~ 117 (479)
T PRK09441 115 FRV 117 (479)
T ss_pred eee
Confidence 863
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.92 E-value=3.5e-25 Score=275.65 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=80.5
Q ss_pred cccceEEEecccccCc-CCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 29 KNTVIYQILVPSFKDS-NNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~-~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
+..+|||||+++|+++ ++++.|+|+||++|| |||| +||||+||++|. +..+. ..|||
T Consensus 240 ~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk-~LGv~~i~L~Pi----------------~e~~~~~~~GY--- 299 (726)
T PRK05402 240 APISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVK-EMGFTHVELLPI----------------AEHPFDGSWGY--- 299 (726)
T ss_pred CCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHH-HcCCCEEEECCc----------------ccCCCCCCCCC---
Confidence 4679999999999987 666789999999996 9999 999995555554 44332 36899
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|+|+|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 300 -----~~~~y-------~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vi--------lD~-------V~NH~~ 341 (726)
T PRK05402 300 -----QPTGY-------YAPTSRFGTPDDFRYFVDACHQAGIGVI--------LDW-------VPAHFP 341 (726)
T ss_pred -----CcccC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC
Confidence 66666 677779999999999997 799999999 776 777763
No 50
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.92 E-value=3.2e-25 Score=267.01 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=77.1
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc-ccccCcccee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA-VKTWSRRWIV 106 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~gy~~~v 106 (1065)
|+++|||||++++|.+ .|||+||+++||||| +||||+||++|+.+ .+ ..+|||
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~-~LGv~~i~L~Pi~~----------------~~~~~~~GY---- 144 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLA-DLGITAIELMPVAQ----------------FPGTRGWGY---- 144 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHH-HcCCCEEEeCcccc----------------CCCCCCCCC----
Confidence 7899999999999976 399999999999999 99999555555444 33 246899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|+++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 145 ----~~~~~-------~~~~~~~G~~~e~k~lV~~aH~~Gi~Vi--------lD~-------V~NH~~ 186 (542)
T TIGR02402 145 ----DGVLP-------YAPHNAYGGPDDLKALVDAAHGLGLGVI--------LDV-------VYNHFG 186 (542)
T ss_pred ----CccCc-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCCCC
Confidence 55555 566779999999999998 799999999 776 777753
No 51
>KOG0470|consensus
Probab=99.92 E-value=1.9e-24 Score=252.98 Aligned_cols=91 Identities=30% Similarity=0.494 Sum_probs=74.6
Q ss_pred cceEEEEecccccCcCCCC--CCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC--CCCCCcCCC
Q psy15051 559 NTVIYQILVPSFKDSNNDG--IGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN--GDIGYDISN 633 (1065)
Q Consensus 559 ~~vIYei~v~~F~d~~~d~--~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~--~~~GY~~~d 633 (1065)
+.+|||+|||.|+...+.. .|.++ |.++| |++||+||+|||+||||+++.+ ..|||.|++
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~---------------~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~n 293 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYL---------------GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTN 293 (757)
T ss_pred heEEEEEeeccccCCCCccccccchh---------------hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeE
Confidence 7899999999998765421 22255 88899 9999999999999999999953 259999999
Q ss_pred CcccCCCCCCHH------HHHHHHHHHHhcCCceeec
Q psy15051 634 HTEVGKDFGTME------DFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 634 y~~idp~~Gt~e------dfk~LV~~aH~~Gi~VIlD 664 (1065)
||++-.+|||.+ |||+||++||..||-|+||
T Consensus 294 FFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLD 330 (757)
T KOG0470|consen 294 FFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLD 330 (757)
T ss_pred eecccccccCCCcccchHHHHHHHHHHhhCCcEEehh
Confidence 999999999999 9999999994444433333
No 52
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.92 E-value=1.3e-24 Score=263.72 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=146.2
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
++..+|||||+++|+.+.+.+.++++|++++ |+||| +||||.|+++|..+ .+. ..|||
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk-~LGvt~I~LmPi~e----------------~~~~~~wGY--- 303 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQ-QLGFTHIELLPITE----------------HPFGGSWGY--- 303 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHH-HcCCCEEEECcccc----------------CCCCCCCCC---
Confidence 3568999999999998766678899999999 59999 99999555555443 332 46999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++..| ++++|+||+.+||++||+ +|++||+|| +|+ |+||++
T Consensus 304 -----~~~~~-------~a~~~~~G~~~dfk~lV~~~H~~Gi~VI--------lD~-------V~nH~~----------- 345 (730)
T PRK12568 304 -----QPLGL-------YAPTARHGSPDGFAQFVDACHRAGIGVI--------LDW-------VSAHFP----------- 345 (730)
T ss_pred -----CCCcC-------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccCC-----------
Confidence 66666 677889999999999998 699999999 777 777764
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCC-CCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcccc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPH-LPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1065)
+. +.+ ..++|. ..|.... +....
T Consensus 346 -----------------------------~d~~~l------------~~fdg~----~~Ye~~d-----------~~~g~ 369 (730)
T PRK12568 346 -----------------------------DDAHGL------------AQFDGA----ALYEHAD-----------PREGM 369 (730)
T ss_pred -----------------------------cccccc------------ccCCCc----cccccCC-----------CcCCc
Confidence 11 000 000110 0000000 00000
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
+ ..+. .+ .+||.||+|| .+|++
T Consensus 370 ~----------~~W~--------------------~~-~~N~~~peVr---------------------------~~li~ 391 (730)
T PRK12568 370 H----------RDWN--------------------TL-IYNYGRPEVT---------------------------AYLLG 391 (730)
T ss_pred c----------CCCC--------------------Ce-ecccCCHHHH---------------------------HHHHH
Confidence 0 0111 11 5899999997 78999
Q ss_pred HHHHHHHc-CCCeeeecCccccccC-CCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccC
Q psy15051 344 ILEFWLKR-GVDGFGMDSVLKLYEH-ESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSA 420 (1065)
Q Consensus 344 ~l~~Wl~~-GvDGfRlDav~~l~~~-~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~ 420 (1065)
+++||++. ||||||+|||++|... .+-.+ |...+|... ...+.++++||+++++.+.+ +|+..+
T Consensus 392 ~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~--------g~w~pn~~g-----g~en~ea~~Fl~~ln~~v~~~~P~~~~ 458 (730)
T PRK12568 392 SALEWIEHYHLDGLRVDAVASMLYRDYGRAE--------GEWVPNAHG-----GRENLEAVAFLRQLNREIASQFPGVLT 458 (730)
T ss_pred HHHHHHHHhCceEEEEcCHhHhhhhcccccc--------ccccccccC-----CccChHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999965 9999999999988752 21111 111111111 33456899999999998875 599999
Q ss_pred CCCCC
Q psy15051 421 DRQPS 425 (1065)
Q Consensus 421 ~~~~~ 425 (1065)
|+|.+
T Consensus 459 IAEes 463 (730)
T PRK12568 459 IAEES 463 (730)
T ss_pred EEEcC
Confidence 99964
No 53
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.91 E-value=3.6e-24 Score=250.58 Aligned_cols=346 Identities=19% Similarity=0.268 Sum_probs=242.4
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhH-HHHHcCcCEEEeCCCCc-CCCCCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKID-YLKELGVETLWLTPFYS-GPNGDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLd-YLk~LGvnaI~L~PI~~-~~~~~~GY~~~dy~ 635 (1065)
++.|+.-.+.|++.+ |||+ ||+++|| ||++| |++|||+|+|+ ++..++||+|.||+
T Consensus 2 ~n~~~litY~Ds~~~------GdL~---------------gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~ 59 (495)
T PRK13840 2 KNKVQLITYADRLGD------GGLK---------------SLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHT 59 (495)
T ss_pred CCceEEEEeccCCCC------CCHh---------------HHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChh
Confidence 456788888888853 8999 9999999 59999 99999999994 56778999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
.|||+|||++||++|++
T Consensus 60 ~VDP~fGt~eDf~~L~~--------------------------------------------------------------- 76 (495)
T PRK13840 60 KVDPRLGDWDDVKALGK--------------------------------------------------------------- 76 (495)
T ss_pred hcCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence 99999999999999974
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC--CCC------------CCCCCCC-------
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL--NGK------------PGTPPNN------- 772 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~--dG~------------p~~~~~~------- 772 (1065)
||+||+|+|+||||.+|+||++++++ +++|.|||+|.+.. +|. |..+...
T Consensus 77 -------giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~ 149 (495)
T PRK13840 77 -------THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGK 149 (495)
T ss_pred -------CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCC
Confidence 35888889999999999999998643 78999999986521 110 0000111
Q ss_pred ----Ccc-------ccCCCHHHHHHHHHHHHh-------------------------------------cC-----CceE
Q psy15051 773 ----WKH-------INITSREVMRSQKDVVQS-------------------------------------FP-----LILM 799 (1065)
Q Consensus 773 ----W~~-------ln~~n~~v~~~l~~~lk~-------------------------------------~~-----~~~~ 799 (1065)
|.. ||+.||+|+++|.++++. ++ .+..
T Consensus 150 ~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ 229 (495)
T PRK13840 150 TRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGME 229 (495)
T ss_pred ceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCE
Confidence 221 999999999999999332 00 0456
Q ss_pred EEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhH
Q psy15051 800 IITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRI 874 (1065)
Q Consensus 800 ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl 874 (1065)
+++|.+.. ++.+. ...++++|+|.+...+.. ..+...+...+.. .|.... +|+.|||.-.+
T Consensus 230 ll~Ei~~y--------~~~~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~----~p~~~~--n~L~~HDgIgl 295 (495)
T PRK13840 230 VLVEIHSY--------YKTQIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI----RPRNAV--TVLDTHDGIGI 295 (495)
T ss_pred EEEeCccc--------cCccccccccccEEecchhhHHHHHHHHhCCchHHHHHHHh----CCCccE--EeeecCCCCCc
Confidence 78887653 21110 135889999998886533 2344444444443 466653 59999999877
Q ss_pred ----------hhhcCHH-HHHHHHHHHHhCCCeEEEEcccccCc----------cCCC-------------------Ccc
Q psy15051 875 ----------ATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELGM----------ESPI-------------------LRY 914 (1065)
Q Consensus 875 ----------~s~~~~~-~~kla~~ll~tlpGiP~IyyGdE~G~----------~~~~-------------------~~~ 914 (1065)
...++.+ +..+...+.-...|+++.+.|+.... .... ++.
T Consensus 296 ~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~ 375 (495)
T PRK13840 296 IDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQ 375 (495)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCcce
Confidence 2234433 44444555557789999998876211 1100 000
Q ss_pred -------CCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHH
Q psy15051 915 -------EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDL 987 (1065)
Q Consensus 915 -------~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~L 987 (1065)
-..+|-+.... ...+|+.||..++|+..+ ..-+.++++-+++|
T Consensus 376 iY~~~ll~~~ND~~~~~~-----t~~~R~inR~~~~~~~~~-------------------------~~l~~~v~~~l~~l 425 (495)
T PRK13840 376 VYYVGLLAGPNDMELLAR-----TNVGRDINRHYYSTAEID-------------------------EALERPVVKALNAL 425 (495)
T ss_pred eeechhhccCccHHHHHh-----cCCCcccCCCCCCHHHHH-------------------------HHHHHHHHHHHHHH
Confidence 00011111111 234677788887777532 11234599999999
Q ss_pred HHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 988 TTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 988 i~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
+++|+++||| .|++.....+++.++..|..+.....+.+|+.....++....
T Consensus 426 i~~R~~~~aF-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (495)
T PRK13840 426 IRFRNEHPAF-DGAFSYAADGDTSLTLSWTAGDSSASLTLDFAPKKGLITALD 477 (495)
T ss_pred HHHHhcCccc-CceEEEecCCCCeEEEEEecCCceEEEEEEcccceEEEEecc
Confidence 9999999999 699987777778899999988888899999988877777664
No 54
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.91 E-value=1.1e-24 Score=267.56 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=84.3
Q ss_pred hhcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTW 100 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (1065)
.|+++||||||||+|++.+++ ..|+|+||+++ |+||| +||||+||++|+.++..... ..-.....+|
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk-~LGvtaI~L~Pi~~~~~~~~------~~~~~~~~yw 224 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLK-KLGVTAVELLPVHAFIDDRH------LLEKGLRNYW 224 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHH-HcCCCEEEECCcccCCcccc------ccccCCCCcc
Confidence 468999999999999875443 46999999996 99999 99999888888777543100 0001112469
Q ss_pred CccceeecccccCCCcccccccccccccc---CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 101 SRRWIVVNHEQISRLPTRTVSSLNIICKY---FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 101 gy~~~v~d~~~v~~~~~~~~~~~~i~~~~---Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|| +..+| ++|+|+| |+++|||+||+ +|++||+|| +|+ |+||++
T Consensus 225 GY--------d~~~y-------~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI--------lDv-------V~NHt~ 271 (688)
T TIGR02100 225 GY--------NTLGF-------FAPEPRYLASGQVAEFKTMVRALHDAGIEVI--------LDV-------VYNHTA 271 (688)
T ss_pred Cc--------Ccccc-------cccChhhcCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcCCcc
Confidence 99 55555 5666688 67999999998 699999999 887 888875
No 55
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.91 E-value=2.6e-24 Score=250.30 Aligned_cols=346 Identities=18% Similarity=0.269 Sum_probs=226.7
Q ss_pred EecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCH
Q psy15051 565 ILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTM 644 (1065)
Q Consensus 565 i~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~ 644 (1065)
|.+.+|.|+++++.|||+ |+.++ ||++ ||++|||+|+|++++ ++||+|.||+.|||+|||+
T Consensus 3 v~lity~Ds~g~glgdl~---------------g~l~~--yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~ 63 (470)
T TIGR03852 3 AMLITYADSLGKNLKELN---------------KVLEN--YFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDW 63 (470)
T ss_pred ceEEEecCCCCCChhhHH---------------HHHHH--HHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCH
Confidence 456788888888899999 99988 9999 799999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCc
Q psy15051 645 EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGM 724 (1065)
Q Consensus 645 edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi 724 (1065)
+||++|++++
T Consensus 64 ~Df~~L~~~~---------------------------------------------------------------------- 73 (470)
T TIGR03852 64 SDVEALSEKY---------------------------------------------------------------------- 73 (470)
T ss_pred HHHHHHHHhh----------------------------------------------------------------------
Confidence 9999999876
Q ss_pred EEEEEeccCCCCCCchhhHhhhcc--CCCCCccee-----ecCCCC--C-----C-CC--CCCCCCc-----------c-
Q psy15051 725 KILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYV-----WKDGLN--G-----K-PG--TPPNNWK-----------H- 775 (1065)
Q Consensus 725 ~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~-----~~~~~d--G-----~-p~--~~~~~W~-----------~- 775 (1065)
+||+|+|+||||.+|+||++++++ +++|+|||+ |.++.. . + |+ .+...|. .
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 788899999999999999999865 789999998 443210 0 0 01 1111221 1
Q ss_pred ------ccCCCHHHHHHHHHHHHh-------------------------------------------cCCceEEEeecCC
Q psy15051 776 ------INITSREVMRSQKDVVQS-------------------------------------------FPLILMIITEAYS 806 (1065)
Q Consensus 776 ------ln~~n~~v~~~l~~~lk~-------------------------------------------~~~~~~ligE~~~ 806 (1065)
||+.||+|++++.++++. ..+++++|+|++.
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~ 233 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHE 233 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhh
Confidence 999999999999888322 1237889999964
Q ss_pred CChHHHhhhccCCCCccccccccHHHHHHhh---cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhh---hcCH
Q psy15051 807 PSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG---ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT---RYSP 880 (1065)
Q Consensus 807 ~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s---~~~~ 880 (1065)
. . .+... .....+++|+|.+...+- ...+...+...+. ..|...+ +|+.|||+--+.. .+..
T Consensus 234 ~----~-~~~~~-~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~----~~p~~~~--nfL~sHDgigl~~~~glL~~ 301 (470)
T TIGR03852 234 H----Y-TIQFK-IAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR----KSPMKQF--TTLDTHDGIGVVDVKDLLTD 301 (470)
T ss_pred h----c-ccccc-cccceeEEccCccchhhHHHhhccCHHHHHHHHH----hCcccce--EEeecCCCCCCccccccCCH
Confidence 2 1 12211 024678889988877553 2345555555544 4555555 4999999965532 3443
Q ss_pred HHH-HHHHHHHHhCCCeEEEEcccccCccCCC-CccC-----CC----------------CCcccc----ccccccccc-
Q psy15051 881 DLV-DAMNMLTLLLPGTAVTFAGDELGMESPI-LRYE-----DQ----------------RDPEGY----IFGKDNYLK- 932 (1065)
Q Consensus 881 ~~~-kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~-----~~----------------~Dp~~~----~~~~~~~~~- 932 (1065)
+.. .+...+.---+++-.+|-+.+.|-.... +... +. +-|.-+ --..+.+..
T Consensus 302 ~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~ 381 (470)
T TIGR03852 302 EEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELL 381 (470)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHH
Confidence 333 2333332233444444444433322110 0000 00 000000 000000000
Q ss_pred ----cccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccC-CCeEEEcc
Q psy15051 933 ----VCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM-GDYKISTP 1007 (1065)
Q Consensus 933 ----~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~-G~~~~l~~ 1007 (1065)
.+|+.+|.. -.++.++++.+.. +.+-+.+|+++|+++|||+. |++.....
T Consensus 382 ~rt~~~R~Inr~~---------------------~~~~~i~~~l~~~----v~~~L~~li~~R~~~~aF~~~g~~~~~~~ 436 (470)
T TIGR03852 382 EETKEGRNINRHY---------------------YTLEEIAEEVKRP----VVAKLLNLLRFRNTSKAFDLDGSIDIETP 436 (470)
T ss_pred HhcCCCCCCCCCC---------------------CCHHHHHHHHhhH----HHHHHHHHHHHHhhCcccCCCCceEecCC
Confidence 111111111 1345666666643 66666779999999999986 99986667
Q ss_pred CCcEEEEEEEcC--CcEEEEEEECCCCcEEE
Q psy15051 1008 NNYVFILTRTEG--STSVYLIINLNSRTETV 1036 (1065)
Q Consensus 1008 ~~~viaf~R~~~--~~~vlVv~N~s~~~~~v 1036 (1065)
++.++++.|... ++++.+++|++++++++
T Consensus 437 ~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 437 SENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred CCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 889999999844 78999999999998765
No 56
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.91 E-value=2.6e-24 Score=262.26 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=84.5
Q ss_pred hhcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc--cccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT--TAVK 98 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~--~~~~ 98 (1065)
-|+++||||+|+|+|+.++++ ..|+|+|++++ ||||| +||||+||++|..++... +... ....
T Consensus 147 ~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk-~LGvt~I~L~Pv~~~~~~--------~~~~~~g~~~ 217 (658)
T PRK03705 147 PWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLK-QLGITALELLPVAQFASE--------PRLQRMGLSN 217 (658)
T ss_pred CccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHH-HcCCCEEEecCcccCCCc--------cccccccccc
Confidence 478999999999999875543 35999999974 99999 999998888888875431 1111 1125
Q ss_pred ccCccceeecccccCCCccccccccccccccCcH-----HHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYM-----KKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHS 172 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~-----~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~ 172 (1065)
+||| ++.+| ++|+|+|||. ++||+||+ +|++||+|| +|+ |+||+
T Consensus 218 ywGY--------d~~~y-------fa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VI--------lDv-------V~NHt 267 (658)
T PRK03705 218 YWGY--------NPLAM-------FALDPAYASGPETALDEFRDAVKALHKAGIEVI--------LDV-------VFNHS 267 (658)
T ss_pred ccCc--------ccccc-------cccccccCCCCcchHHHHHHHHHHHHHCCCEEE--------EEE-------cccCc
Confidence 7999 55555 6666789984 79999998 699999999 888 88887
Q ss_pred c
Q psy15051 173 M 173 (1065)
Q Consensus 173 ~ 173 (1065)
+
T Consensus 268 ~ 268 (658)
T PRK03705 268 A 268 (658)
T ss_pred c
Confidence 5
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.91 E-value=4.3e-24 Score=259.95 Aligned_cols=214 Identities=15% Similarity=0.190 Sum_probs=145.6
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
+..+|||+|+++|+.......|+++|++++| +||| +||||+|+++|..+... ...|||
T Consensus 143 ~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk-~lG~t~velmPv~e~~~---------------~~~wGY----- 201 (639)
T PRK14706 143 QPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVT-YMGYTHVELLGVMEHPF---------------DGSWGY----- 201 (639)
T ss_pred CCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHH-HcCCCEEEccchhcCCC---------------CCCCCc-----
Confidence 4589999999999876444468999999997 9999 99999777777655211 246899
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
++.+| ++++++|||.+|||+||+ +|++||+|| +|+ |+||++
T Consensus 202 ---~~~~~-------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi--------lD~-------v~nH~~------------- 243 (639)
T PRK14706 202 ---QVTGY-------YAPTSRLGTPEDFKYLVNHLHGLGIGVI--------LDW-------VPGHFP------------- 243 (639)
T ss_pred ---Ccccc-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccC-------------
Confidence 55556 667779999999999997 799999999 776 777753
Q ss_pred ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCCC
Q psy15051 187 FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYPP 266 (1065)
Q Consensus 187 ~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1065)
+...++ ..++|.. . +++.+.. .. +
T Consensus 244 ---------------------------~~~~~l-----------~~~dg~~-~--y~~~~~~------------~g-~-- 267 (639)
T PRK14706 244 ---------------------------TDESGL-----------AHFDGGP-L--YEYADPR------------KG-Y-- 267 (639)
T ss_pred ---------------------------cchhhh-----------hccCCCc-c--eeccCCc------------CC-c--
Confidence 111111 0011100 0 0000000 00 0
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHH
Q psy15051 267 PHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILE 346 (1065)
Q Consensus 267 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 346 (1065)
-..+. ...+|+.||+|| ++|+++++
T Consensus 268 -------~~~w~---------------------~~~~~~~~~eVr---------------------------~~l~~~~~ 292 (639)
T PRK14706 268 -------HYDWN---------------------TYIFDYGRNEVV---------------------------MFLIGSAL 292 (639)
T ss_pred -------CCCCC---------------------CcccCCCCHHHH---------------------------HHHHHHHH
Confidence 00011 124789999997 78999999
Q ss_pred HHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCC
Q psy15051 347 FWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQP 424 (1065)
Q Consensus 347 ~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~ 424 (1065)
||++ .||||||+|||++|..-.. ...+..+ ++.. ...+.++++||+++++.+.+. |+..+|+|-
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~-~~~~~~~--------~~~g-----g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~ 358 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDF-SRTEWVP--------NIHG-----GRENLEAIAFLKRLNEVTHHMAPGCMMIAEE 358 (639)
T ss_pred HHHHHhCCCeEEEeeehheeeccc-Ccccccc--------cccC-----CcccHHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 9996 5999999999999865221 1011111 1111 456789999999999988775 999999997
Q ss_pred Cc
Q psy15051 425 SC 426 (1065)
Q Consensus 425 ~~ 426 (1065)
+.
T Consensus 359 ~~ 360 (639)
T PRK14706 359 ST 360 (639)
T ss_pred CC
Confidence 53
No 58
>PLN02960 alpha-amylase
Probab=99.90 E-value=1.7e-23 Score=253.60 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=145.9
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
.+++.++|||+|+++|.. ..+.|+|+|++++ |+||| +||||+|+++|..+... ...|||
T Consensus 391 ~~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk-~LGvt~IeLmPv~e~~~---------------~~swGY-- 450 (897)
T PLN02960 391 KVPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVK-KAGYNAIQLIGVQEHKD---------------YSSVGY-- 450 (897)
T ss_pred CCCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHH-HcCCCEEEECCcccCCC---------------CCCCCC--
Confidence 456788999999999863 3478999999987 99999 99999666666554211 235899
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| ++|+++|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 451 ------~~~~y-------fa~~~~yGtp~dfk~LVd~aH~~GI~VI--------LDv-------V~NH~~---------- 492 (897)
T PLN02960 451 ------KVTNF-------FAVSSRFGTPDDFKRLVDEAHGLGLLVF--------LDI-------VHSYAA---------- 492 (897)
T ss_pred ------CcccC-------CCcccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccC----------
Confidence 66666 667779999999999997 799999999 666 666654
Q ss_pred CccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcccc
Q psy15051 184 GQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1065)
+.+++. ...++|.. ..|+.... ..
T Consensus 493 ------------------------------~d~~~~----------L~~FDG~~---~~Yf~~~~------------~g- 516 (897)
T PLN02960 493 ------------------------------ADEMVG----------LSLFDGSN---DCYFHSGK------------RG- 516 (897)
T ss_pred ------------------------------Cccccc----------hhhcCCCc---cceeecCC------------CC-
Confidence 322211 01111110 01111000 00
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
.|..- ....+||.+|+|| .+|++
T Consensus 517 ----------~~~~W--------------------G~~~fNy~~~eVr---------------------------~fLls 539 (897)
T PLN02960 517 ----------HHKRW--------------------GTRMFKYGDHEVL---------------------------HFLLS 539 (897)
T ss_pred ----------ccCCC--------------------CCcccCCCCHHHH---------------------------HHHHH
Confidence 01000 1246899999997 78999
Q ss_pred HHHHHHH-cCCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccC
Q psy15051 344 ILEFWLK-RGVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSA 420 (1065)
Q Consensus 344 ~l~~Wl~-~GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~ 420 (1065)
+++||++ .||||||+|||..|.. +.++...+ | ++..+... ....++..||+++++.+.+ +|+.++
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~------G----~~~~~~n~--~~d~~Ai~fL~~lN~~v~~~~P~vil 607 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFT------G----DLDEYCNQ--YVDRDALIYLILANEMLHQLHPNIIT 607 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccC------C----cccccCCc--cCCchHHHHHHHHHHHHHhhCCCeEE
Confidence 9999996 5999999999988776 22221111 1 00111111 2457899999999987766 599999
Q ss_pred CCCCCc
Q psy15051 421 DRQPSC 426 (1065)
Q Consensus 421 ~~~~~~ 426 (1065)
|.|-+.
T Consensus 608 IAEdss 613 (897)
T PLN02960 608 IAEDAT 613 (897)
T ss_pred EEECCC
Confidence 999654
No 59
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.90 E-value=1.5e-23 Score=265.65 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=143.5
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
.+..+|||||+++|++. |++++++++ ||||| +||||.|+++|..+ .+. ..|||
T Consensus 745 ~~p~~IYEvHvgsf~~~-----~~~~~l~~~lldYlk-~LGvt~IeLmPv~e----------------~p~~~swGY--- 799 (1224)
T PRK14705 745 NSPMSVYEVHLGSWRLG-----LGYRELAKELVDYVK-WLGFTHVEFMPVAE----------------HPFGGSWGY--- 799 (1224)
T ss_pred cCCcEEEEEEecccccC-----CchHHHHHHHHHHHH-HhCCCEEEECcccc----------------CCCCCCCCC---
Confidence 35689999999999873 789999999 59999 99999666555544 332 46999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++++++|||++|||+||+ +|++||+|| +|+ |+||++
T Consensus 800 -----~~~~y-------~ap~~ryGt~~dfk~lVd~~H~~GI~VI--------LD~-------V~nH~~----------- 841 (1224)
T PRK14705 800 -----QVTSY-------FAPTSRFGHPDEFRFLVDSLHQAGIGVL--------LDW-------VPAHFP----------- 841 (1224)
T ss_pred -----Ccccc-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccCC-----------
Confidence 66666 677779999999999998 699999999 666 666643
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccC
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
.. .|+ ...++|..- ++..+.. ..
T Consensus 842 -----------------------------~d-~~~----------l~~fdg~~~---y~~~d~~------------~g-- 864 (1224)
T PRK14705 842 -----------------------------KD-SWA----------LAQFDGQPL---YEHADPA------------LG-- 864 (1224)
T ss_pred -----------------------------cc-hhh----------hhhcCCCcc---cccCCcc------------cC--
Confidence 22 121 111111100 0000000 00
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
.| ++| ....+||.+|+|| .+|+++
T Consensus 865 ---------~~-----------------~~W---g~~~fn~~~~eVr---------------------------~fli~~ 888 (1224)
T PRK14705 865 ---------EH-----------------PDW---GTLIFDFGRTEVR---------------------------NFLVAN 888 (1224)
T ss_pred ---------CC-----------------CCC---CCceecCCCHHHH---------------------------HHHHHH
Confidence 00 011 1246899999997 789999
Q ss_pred HHHHHHc-CCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCC
Q psy15051 345 LEFWLKR-GVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSAD 421 (1065)
Q Consensus 345 l~~Wl~~-GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~ 421 (1065)
++||+++ ||||||+|+|++|.. +.+ .++ |.+.+|.++ ...+.++.+||+++++.+.+ +|+..+|
T Consensus 889 a~~Wl~eyhiDGfR~Dav~~mly~Dys--r~~------g~w~pn~~g-----g~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 889 ALYWLDEFHIDGLRVDAVASMLYLDYS--REE------GQWRPNRFG-----GRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred HHHHHHHhCCCcEEEeehhhhhhcccc--ccc------ccccccccC-----CccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999976 999999999998864 221 111 222222222 34568999999999988776 4999999
Q ss_pred CCCCc
Q psy15051 422 RQPSC 426 (1065)
Q Consensus 422 ~~~~~ 426 (1065)
+|.+-
T Consensus 956 AEest 960 (1224)
T PRK14705 956 AEEST 960 (1224)
T ss_pred EEcCC
Confidence 99644
No 60
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.88 E-value=5.3e-23 Score=251.86 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=83.4
Q ss_pred hcccceEEEecccccCcCCCC---cccccchhhh-----------hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccc
Q psy15051 28 WKNTVIYQILVPSFKDSNNDG---IGDLRGKNVR-----------KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL 93 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g---~Gdl~gi~~k-----------L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~ 93 (1065)
++++||||+|+|+|+..++++ .|+|+|++++ |+||| +||||+||++|+.++.... ...
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~-~LGvt~I~L~Pi~~~~~~~-------~~~ 196 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLK-ELGVTHVQLLPVFDFAGVD-------EED 196 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHH-HcCCCEEEeCCcccccccc-------ccc
Confidence 456899999999999776655 5888888876 99999 9999988888877644310 000
Q ss_pred cccccccCccceeecccccCCCccccccccccccccCc--HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCC
Q psy15051 94 TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPS 170 (1065)
Q Consensus 94 ~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~n 170 (1065)
......|||. ..||+.+++- +..+|.+|+ ++|||+||+ ||++||+|| +|+ |+|
T Consensus 197 ~~~~~~wGY~--~~~y~~~~~~-------y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi--------lDv-------V~N 252 (605)
T TIGR02104 197 PNNAYNWGYD--PLNYNVPEGS-------YSTNPYDPATRIRELKQMIQALHENGIRVI--------MDV-------VYN 252 (605)
T ss_pred CCCCCCCCCC--CccCCCcChh-------hhcCCCccchHHHHHHHHHHHHHHCCCEEE--------EEE-------EcC
Confidence 0111248884 6666666653 555666554 699999998 699999999 887 888
Q ss_pred Ccc
Q psy15051 171 HSM 173 (1065)
Q Consensus 171 H~~ 173 (1065)
|++
T Consensus 253 H~~ 255 (605)
T TIGR02104 253 HTY 255 (605)
T ss_pred Ccc
Confidence 874
No 61
>PLN00196 alpha-amylase; Provisional
Probab=99.87 E-value=5.3e-22 Score=231.54 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=72.1
Q ss_pred cccceEEEec-ccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILV-PSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~-~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
.+.|++|-|- .++.. ..|+++||++||+||+ +||||+||++| ++++ ..+|||
T Consensus 23 ~~~v~~Q~F~W~~~~~----~gg~~~~i~~kldyL~-~LGvtaIWL~P----------------~~~s-~s~hGY----- 75 (428)
T PLN00196 23 AGQVLFQGFNWESWKQ----NGGWYNFLMGKVDDIA-AAGITHVWLPP----------------PSHS-VSEQGY----- 75 (428)
T ss_pred CCCEEEEeeccCCCCC----CCcCHHHHHHHHHHHH-HcCCCEEEeCC----------------CCCC-CCCCCC-----
Confidence 4478888776 44432 2479999999999999 99999555444 4443 246898
Q ss_pred cccccCCCccccccccccc-cccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 108 NHEQISRLPTRTVSSLNII-CKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~-~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|| ++|||.+||++||+ ||++||+|| +|+ |+||++
T Consensus 76 ---~~~D~-------y~ld~~~fGt~~elk~Lv~~aH~~GIkVi--------lDv-------V~NH~~ 118 (428)
T PLN00196 76 ---MPGRL-------YDLDASKYGNEAQLKSLIEAFHGKGVQVI--------ADI-------VINHRT 118 (428)
T ss_pred ---Ccccc-------CCCCcccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CccCcc
Confidence 55555 5666 48999999999997 699999999 998 999986
No 62
>smart00642 Aamy Alpha-amylase domain.
Probab=99.87 E-value=1.6e-22 Score=207.45 Aligned_cols=76 Identities=54% Similarity=0.969 Sum_probs=73.9
Q ss_pred EEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---CCCCCcCCCCcccCCC
Q psy15051 564 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN---GDIGYDISNHTEVGKD 640 (1065)
Q Consensus 564 ei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~---~~~GY~~~dy~~idp~ 640 (1065)
||++++|.++++++.|||+ ||+++|+|||+||||+|||+||++++. .+|||++.||++++|+
T Consensus 1 qi~~~~F~~~~~~~~G~~~---------------gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQ---------------GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPR 65 (166)
T ss_pred CeeeccccCCCCCCCcCHH---------------HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcc
Confidence 6899999999999999999 999999999999999999999999986 6799999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15051 641 FGTMEDFDELVKLV 654 (1065)
Q Consensus 641 ~Gt~edfk~LV~~a 654 (1065)
|||++||++||++|
T Consensus 66 ~Gt~~d~~~lv~~~ 79 (166)
T smart00642 66 FGTMEDFKELVDAA 79 (166)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999999
No 63
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.87 E-value=6.2e-22 Score=235.12 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=75.7
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
|+..||||+|+.+|+. + ..-|++++.+++|+||| +||||+|-++|+.+.- .. ..|||
T Consensus 142 ~e~~vIYElHvGs~~~-~-~~~~~~e~a~~llpYl~-elG~T~IELMPv~e~p-----------~~----~sWGY----- 198 (628)
T COG0296 142 WEPIVIYELHVGSFTP-D-RFLGYFELAIELLPYLK-ELGITHIELMPVAEHP-----------GD----RSWGY----- 198 (628)
T ss_pred CCCceEEEEEeeeccC-C-CCcCHHHHHHHHhHHHH-HhCCCEEEEcccccCC-----------CC----CCCCC-----
Confidence 7799999999999998 4 66799999999999999 9999977777765532 22 46999
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
+..-| +++..+|||.+|||+||+ ||++||.||
T Consensus 199 ---q~~g~-------yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 199 ---QGTGY-------YAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred ---Cccee-------ccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 66665 677779999999999997 799999999
No 64
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.87 E-value=4.9e-22 Score=256.60 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=81.1
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhh------hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccC
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK------RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWS 101 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL------~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~g 101 (1065)
|++++|||+++++|+..+....|+++|+.++| +||| +||||+||++|+.++....- + + -.....+||
T Consensus 156 ~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk-~LGvt~I~L~Pi~~~~~~~~---~--~-~~g~~~yWG 228 (1221)
T PRK14510 156 WDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLK-KLGVSIVELNPIFASVDEHH---L--P-QLGLSNYWG 228 (1221)
T ss_pred cccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHH-HcCCCEEEeCCccccCcccc---c--c-cccCcCcCC
Confidence 68899999999999865443345555555555 5999 99999888888877543100 0 0 011235799
Q ss_pred ccceeecccccCCCccccccccccccccC--cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 102 RRWIVVNHEQISRLPTRTVSSLNIICKYF--YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 102 y~~~v~d~~~v~~~~~~~~~~~~i~~~~G--t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
| ++.+| ++|||+|| +.+|||+||+ +|++||+|| +|+ |+|||+
T Consensus 229 Y--------~~~~y-------fa~dp~yg~~~~~efk~lV~~~H~~GI~VI--------LDv-------V~NHt~ 273 (1221)
T PRK14510 229 Y--------NTVAF-------LAPDPRLAPGGEEEFAQAIKEAQSAGIAVI--------LDV-------VFNHTG 273 (1221)
T ss_pred C--------CCCCC-------CCcChhhccCcHHHHHHHHHHHHHCCCEEE--------EEE-------cccccc
Confidence 9 66666 67777999 9999999998 699999999 887 888875
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.86 E-value=1.1e-21 Score=247.55 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=82.5
Q ss_pred hcccceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeee-cccCccccc-cc-c
Q psy15051 28 WKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISF-WMNCPILTT-AV-K 98 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~-~~~~p~~~~-~~-~ 98 (1065)
++++||||+|+|+|+.... ...|+|+||+++|+||| +||||.||++|.++...+.-.- -...+.+.+ .. -
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLk-eLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQ-DLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHH-HcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 5689999999999984221 13699999999999999 9999999999987632210000 000000111 11 2
Q ss_pred ccCccceeecccccCCCccccccccccccccC--cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYF--YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~G--t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.|||. +.||+.+++. +..+|..| ++++||+||+ +|++||+|| ||| |+||++
T Consensus 528 nWGYd--p~~yfape~~-------Ygtdp~dp~~ri~EfK~LV~alH~~GI~VI--------LDV-------VyNHt~ 581 (1111)
T TIGR02102 528 NWGYD--PQNYFALSGM-------YSEDPKDPELRIAEFKNLINEIHKRGMGVI--------LDV-------VYNHTA 581 (1111)
T ss_pred ccCCC--cCcCcccccc-------cccCCcCccccHHHHHHHHHHHHHCCCEEE--------Eec-------cccccc
Confidence 48884 7777777654 44444332 3799999998 699999999 887 888864
No 66
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.86 E-value=2e-21 Score=236.37 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=77.0
Q ss_pred cccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
+..+|||++++.|+. ....|++++++++ |+||| +||||+|+++|..+... ...|||
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk-~LG~t~I~LmPi~e~~~---------------~~~wGY----- 284 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIK-ALGYNAVQLMAIQEHAY---------------YGSFGY----- 284 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHH-HcCCCEEEECCccccCC---------------CCCCCc-----
Confidence 467999999999853 3357999998765 99999 99999666666555221 246899
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++++++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 285 ---~~~~~-------fa~~~~~Gtp~dlk~LVd~aH~~GI~Vi--------lDv-------V~nH~~ 326 (758)
T PLN02447 285 ---HVTNF-------FAVSSRSGTPEDLKYLIDKAHSLGLRVL--------MDV-------VHSHAS 326 (758)
T ss_pred ---CcccC-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccc
Confidence 56666 666778999999999997 799999999 887 888865
No 67
>PLN02361 alpha-amylase
Probab=99.84 E-value=1.6e-20 Score=216.75 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=69.4
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecc
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNH 109 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~ 109 (1065)
..|++|-|--.-.+. .-+++|++||+||+ +||||+||++|+.+ + ..+|||
T Consensus 11 ~~v~lQ~F~W~~~~~-----~~w~~i~~kl~~l~-~lG~t~iwl~P~~~----------------~-~~~~GY------- 60 (401)
T PLN02361 11 REILLQAFNWESHKH-----DWWRNLEGKVPDLA-KSGFTSAWLPPPSQ----------------S-LAPEGY------- 60 (401)
T ss_pred CcEEEEEEeccCCcc-----HHHHHHHHHHHHHH-HcCCCEEEeCCCCc----------------C-CCCCCC-------
Confidence 467777764221111 36799999999999 99999555555444 3 235898
Q ss_pred cccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 110 EQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 110 ~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| +++|++|||.+||++||+ +|++||+|| +|+ |+||++
T Consensus 61 -~~~d~-------y~~~~~~Gt~~el~~li~~~h~~gi~vi--------~D~-------V~NH~~ 102 (401)
T PLN02361 61 -LPQNL-------YSLNSAYGSEHLLKSLLRKMKQYNVRAM--------ADI-------VINHRV 102 (401)
T ss_pred -Ccccc-------cccCcccCCHHHHHHHHHHHHHcCCEEE--------EEE-------cccccc
Confidence 66666 677779999999999998 699999999 998 999975
No 68
>PLN02784 alpha-amylase
Probab=99.82 E-value=5.1e-20 Score=222.53 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=77.6
Q ss_pred ccceEEEeccccc-CcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 30 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~-d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
....|+|+...|. ++..+|.. ++||+++|+||+ +||||.||++|..+ +. .++||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w-~~~I~ekldyL~-~LG~taIWLpP~~~----------------s~-s~~GY------ 552 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRW-YMELGEKAAELS-SLGFTVVWLPPPTE----------------SV-SPEGY------ 552 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCch-HHHHHHHHHHHH-HhCCCEEEeCCCCC----------------CC-CCCCc------
Confidence 5678999999998 87777655 899999999999 99999555555433 32 45798
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| +.++++|||.+||++||+ +|++||+|| +|| |+||++
T Consensus 553 --~p~D~-------y~lds~yGT~~ELk~LI~a~H~~GIkVI--------lDi-------ViNH~a 594 (894)
T PLN02784 553 --MPKDL-------YNLNSRYGTIDELKDLVKSFHEVGIKVL--------GDA-------VLNHRC 594 (894)
T ss_pred --Ccccc-------cccCcCcCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc
Confidence 56665 666678999999999998 699999999 998 999975
No 69
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.81 E-value=7.5e-20 Score=226.98 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=82.3
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh-------hhhhHhhhCCCCcCCCCCCCCCcceee--eccc-----
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR-------KRYLELTLGLDPCGSSMNTDSNTIYIS--FWMN----- 89 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k-------L~yl~~~LGv~~~~~~p~~~~~~~~~~--~~~~----- 89 (1065)
+++++|||+|+|.|+..+.. ..|+|.|++++ |.||+ +||||.|.+.|.+|..++--. -+..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~-eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLA-DAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHH-hCCCcEEEEcChhhcCccccccccccccccch
Confidence 56789999999999854433 45999999987 66666 779999999999886543100 0000
Q ss_pred ------Ccccc---------------------------------c-cccccCccceeecccccCCCcccccccccccccc
Q psy15051 90 ------CPILT---------------------------------T-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 90 ------~p~~~---------------------------------~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
.|... . ..-+|||+ ..+|+....- |..+|.
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYD--P~~y~aPegS-------Yatdp~- 398 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYD--PFHYTVPEGS-------YATDPE- 398 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC--CcccCCcChh-------hccCCC-
Confidence 00000 0 01258884 6666666642 566664
Q ss_pred Cc--HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FY--MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt--~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|. .++||+||+ +|++||+|| ||+ |+||++
T Consensus 399 g~~Ri~Efk~mV~alH~~Gi~VI--------lDV-------VyNHt~ 430 (898)
T TIGR02103 399 GPARIKEFREMVQALNKTGLNVV--------MDV-------VYNHTN 430 (898)
T ss_pred CchHHHHHHHHHHHHHHCCCEEE--------EEe-------eccccc
Confidence 43 689999998 699999999 887 888864
No 70
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.9e-19 Score=214.82 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=88.9
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc--ccccc
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT--TAVKT 99 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~--~~~~~ 99 (1065)
|.++||||+|+|.|+..+++ -.|++.|++++ |+||| +||||+|.+.|..+.... +... .-..+
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk-~LGvtaVeLLPV~~~~~~--------~~l~~~gl~n~ 239 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLK-DLGVTAVELLPVFDFYDE--------PHLDKSGLNNN 239 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHH-HhCCceEEEecceEEecc--------ccccccccccc
Confidence 89999999999999865443 34999999999 99999 999999999998774331 3332 23357
Q ss_pred cCccceeecccccCCCccccccccccccc-cCcHHHHHHHHHH-HhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 100 WSRRWIVVNHEQISRLPTRTVSSLNIICK-YFYMKKFKHRIDA-KNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 100 ~gy~~~v~d~~~v~~~~~~~~~~~~i~~~-~Gt~~df~~Li~a-h~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|||. ..+|....+- |.-+|. -+...+||+||++ |++||.|| +|| |+|||.
T Consensus 240 WGYd--P~~fFAp~~~-------Yss~p~p~~~i~EfK~mV~~lHkaGI~VI--------LDV-------VfNHTa 291 (697)
T COG1523 240 WGYD--PLNFFAPEGR-------YASNPEPATRIKEFKDMVKALHKAGIEVI--------LDV-------VFNHTA 291 (697)
T ss_pred cCCC--cccccCCCcc-------ccCCCCcchHHHHHHHHHHHHHHcCCEEE--------EEE-------eccCcc
Confidence 9995 7777777753 555554 3446799999985 99999999 998 999985
No 71
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.78 E-value=5.3e-19 Score=218.69 Aligned_cols=121 Identities=13% Similarity=0.142 Sum_probs=79.2
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh-------hhhhHhhhCCCCcCCCCCCCCCcceee--ec--ccCcc
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR-------KRYLELTLGLDPCGSSMNTDSNTIYIS--FW--MNCPI 92 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k-------L~yl~~~LGv~~~~~~p~~~~~~~~~~--~~--~~~p~ 92 (1065)
+.++||||+|+|.|+..+.. ..|+|.|++++ |+||+ +||||.|.+.|.++..++.-. -+ ..++.
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~Lk-elGVThVeLLPvfDf~tvdE~~~~~~~~~~~~ 415 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLA-DAGLTHVHLLPTFQFGSVDDEKENWKCVDPKE 415 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHH-HcCCCEEEeCCccccCCcccccccccccccch
Confidence 45789999999999865432 35999999987 55666 669999999999886543100 00 00000
Q ss_pred c------------------cccccccCccceeecccccCCCccccccccccccc-cCcHHHHHHHHH-HHhCCCEEEecc
Q psy15051 93 L------------------TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK-YFYMKKFKHRID-AKNDSLHLIDSV 152 (1065)
Q Consensus 93 ~------------------~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~-~Gt~~df~~Li~-ah~~gi~vi~~~ 152 (1065)
+ ....-+|||+ ..+|+....- |.-||. -....+||+||+ +|++||+||
T Consensus 416 l~~~~~~s~~~q~~v~~~~~~d~yNWGYD--P~~YfaPEgS-------YatdP~g~~RI~efk~mV~~lH~~GI~VI--- 483 (970)
T PLN02877 416 LEKLPPDSEEQQAAITAIQDDDGYNWGYN--PVLWGVPKGS-------YASNPDGPCRIIEFRKMVQALNRIGLRVV--- 483 (970)
T ss_pred hccccccchhhhhcccccccCCCCCCCCC--ccccCCCCcc-------cccCCCCcchHHHHHHHHHHHHHCCCEEE---
Confidence 0 0122568884 6666666632 333331 023678999998 699999999
Q ss_pred CCCcccccccccccCCCCCcc
Q psy15051 153 LGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 153 ~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
||+ |+||++
T Consensus 484 -----mDV-------VyNHt~ 492 (970)
T PLN02877 484 -----LDV-------VYNHLH 492 (970)
T ss_pred -----EEE-------CCcccc
Confidence 776 777764
No 72
>smart00642 Aamy Alpha-amylase domain.
Probab=99.73 E-value=3.6e-18 Score=175.35 Aligned_cols=92 Identities=32% Similarity=0.449 Sum_probs=79.1
Q ss_pred EEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc---cccCccceeecccc
Q psy15051 35 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV---KTWSRRWIVVNHEQ 111 (1065)
Q Consensus 35 qi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~---~~~gy~~~v~d~~~ 111 (1065)
||+|+||.++++++.|||+||+++|+||+ +|||+.||++ |+++++. .++|| +
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~-~lG~~~I~l~----------------Pi~~~~~~~~~~~gY--------~ 55 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLK-DLGVTAIWLS----------------PIFESPQGYPSYHGY--------D 55 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHH-HCCCCEEEEC----------------cceeCCCCCCCCCCc--------C
Confidence 79999999999999999999999999999 9999944444 5555554 67888 5
Q ss_pred cCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 112 ISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 112 v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 56 ~~d~-------~~i~~~~Gt~~d~~~lv~~~h~~Gi~vi--------lD~-------V~NH~~ 96 (166)
T smart00642 56 ISDY-------KQIDPRFGTMEDFKELVDAAHARGIKVI--------LDV-------VINHTS 96 (166)
T ss_pred cccc-------CCCCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC
Confidence 5555 566668999999999997 799999999 998 999987
No 73
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.67 E-value=1.4e-16 Score=195.24 Aligned_cols=90 Identities=24% Similarity=0.187 Sum_probs=70.6
Q ss_pred cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccc
Q psy15051 49 IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIIC 127 (1065)
Q Consensus 49 ~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~ 127 (1065)
.|+|++++++|+||+ +|||+.||++ |++.+ +..+||| ++.+| +.|||
T Consensus 12 ~~tf~~~~~~L~YL~-~LGv~~V~ls----------------Pi~~a~~gs~hGY--------dv~D~-------~~idp 59 (825)
T TIGR02401 12 GFTFDDAAALLPYLK-SLGVSHLYLS----------------PILTAVPGSTHGY--------DVVDH-------SEINP 59 (825)
T ss_pred CCCHHHHHHhhHHHH-HcCCCEEEeC----------------cCccCCCCCCCCC--------CCCCC-------CCcCC
Confidence 389999999999999 9999944444 55543 3457999 56665 66667
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCC
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
+||++++|++|++ +|++||+|| +|| |+||++.. ..+|+||++.
T Consensus 60 ~lGt~edf~~Lv~aah~~Gm~vI--------lDi-------VpNH~a~~-------~~~n~wf~dv 103 (825)
T TIGR02401 60 ELGGEEGLRRLSEAARARGLGLI--------VDI-------VPNHMAVH-------LEQNPWWWDV 103 (825)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccccc-------cccChHHHHH
Confidence 9999999999998 699999999 998 99998611 1246888753
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.67 E-value=1.3e-16 Score=206.73 Aligned_cols=96 Identities=23% Similarity=0.577 Sum_probs=88.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcC-CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~-~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
+++++|+|||+|||++|||+||+++ +..+|||++.||+.|||+|||.++|++||++|
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a---------------------- 816 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL---------------------- 816 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH----------------------
Confidence 9999999999999999999999996 45679999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC---CCchhhHhhhcc--CCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS---NKHDWFIKSAQK--IDP 751 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts---~~~~wf~~~~~~--~~~ 751 (1065)
|++||+||+|+|+||++ .+|+||.+.... .++
T Consensus 817 -------------------------------------------h~~Gi~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~ 853 (1693)
T PRK14507 817 -------------------------------------------KAHGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASP 853 (1693)
T ss_pred -------------------------------------------HHCCCEEEEEecccccCCCccCCHHHHHHHHhCCCCC
Confidence 99999999999999998 579999998753 789
Q ss_pred CCcceee
Q psy15051 752 YTNYYVW 758 (1065)
Q Consensus 752 ~~d~y~~ 758 (1065)
|.+||.+
T Consensus 854 y~~~Fdi 860 (1693)
T PRK14507 854 AADAFDI 860 (1693)
T ss_pred ccCeeee
Confidence 9999953
No 75
>KOG0470|consensus
Probab=99.64 E-value=3.2e-16 Score=184.60 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=80.1
Q ss_pred ccceEEEecccccCcCCCC--cccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 30 NTVIYQILVPSFKDSNNDG--IGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g--~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
+.+|||.+||.|+...+.. .|-++|+++| |+||| .||+|+|.++|..+.+.. ...|||. |
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK-~LG~NaiqLmpi~Ef~~~--------------~~s~GY~--~ 291 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLK-KLGYNAIQLMPIFEFGHY--------------YASWGYQ--V 291 (757)
T ss_pred heEEEEEeeccccCCCCccccccchhhhhhhhhhHHH-HhCccceEEeehhhhhhh--------------hhccCcc--e
Confidence 7899999999998665443 2229999999 99999 999998777777665421 1358985 6
Q ss_pred ecccccCCCccccccccccccccCcHH------HHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMK------KFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~------df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++|..... +|||.+ |||.||+ ||..||-|+ +|| |.||++
T Consensus 292 ~nFFapss-------------rYgt~~s~~ri~efK~lVd~aHs~GI~Vl--------LDV-------V~sHaa 337 (757)
T KOG0470|consen 292 TNFFAPSS-------------RYGTPESPCRINEFKELVDKAHSLGIEVL--------LDV-------VHSHAA 337 (757)
T ss_pred eEeecccc-------------cccCCCcccchHHHHHHHHHHhhCCcEEe--------hhh-------hhhhcc
Confidence 66666665 789999 9999997 799999999 898 999986
No 76
>PLN03244 alpha-amylase; Provisional
Probab=99.53 E-value=4.6e-14 Score=169.07 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=63.0
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCcccccc-CCCCCCCCCCCc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYE-HESFANEPRLPE 378 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~-~~~~~d~p~~~~ 378 (1065)
..+|+.+|+|+ ..|+++++||++ .||||||+|+|..|.. +.+. .+..
T Consensus 499 ~~fnyg~~EVr---------------------------~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~--~~f~-- 547 (872)
T PLN03244 499 RMFKYGDLDVL---------------------------HFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF--ASFN-- 547 (872)
T ss_pred ceecCCCHHHH---------------------------HHHHHHHHHHHHHhCcCcceeecchhheeecccc--cccc--
Confidence 35799999997 789999999995 5999999999988876 3221 0100
Q ss_pred CCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCc
Q psy15051 379 AAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSC 426 (1065)
Q Consensus 379 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~ 426 (1065)
.++..+.+.+ ...++..||+.+++++.+. |+.++|.|-+.
T Consensus 548 ------g~~~~y~n~~--~d~dAv~fL~laN~~ih~~~P~~itIAEDsS 588 (872)
T PLN03244 548 ------GDLDDYCNQY--VDKDALMYLILANEILHALHPKIITIAEDAT 588 (872)
T ss_pred ------CCcccccccc--CCchHHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 0122222222 3578999999999987765 99999999643
No 77
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.8e-13 Score=160.63 Aligned_cols=95 Identities=28% Similarity=0.678 Sum_probs=83.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
.....||||++|||+|+|++|||... ...|||+|+|+..|+|.+|+.+.|.+||+++
T Consensus 20 ~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaal---------------------- 77 (889)
T COG3280 20 DARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAAL---------------------- 77 (889)
T ss_pred HHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHH----------------------
Confidence 66778999999999999999999984 3359999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC---CCchhhHhhhcc--CCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS---NKHDWFIKSAQK--IDP 751 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts---~~~~wf~~~~~~--~~~ 751 (1065)
|++||.+|+|+||||++ ..++|+.+.+.. ++.
T Consensus 78 -------------------------------------------k~~GlGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ 114 (889)
T COG3280 78 -------------------------------------------KSRGLGLIVDIVPNHMAVGGHENPWWWDVLENGRDSA 114 (889)
T ss_pred -------------------------------------------HhcCCceEEEecccchhcccccChHHHHHHHhCcCcc
Confidence 88888888999999986 447888887753 777
Q ss_pred CCccee
Q psy15051 752 YTNYYV 757 (1065)
Q Consensus 752 ~~d~y~ 757 (1065)
|.+||-
T Consensus 115 ya~yFD 120 (889)
T COG3280 115 YANYFD 120 (889)
T ss_pred chhhcc
Confidence 888873
No 78
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.33 E-value=1.9e-12 Score=163.48 Aligned_cols=82 Identities=21% Similarity=0.419 Sum_probs=76.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCC----CCHHHHHHHHHHHHhcCCceeecccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDF----GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQ 673 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~----Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~ 673 (1065)
...++|+|||+||+|.||||||++-....+.|++.||+.|||.| |+.+||++||+++
T Consensus 133 ~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~------------------- 193 (1464)
T TIGR01531 133 EWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKL------------------- 193 (1464)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHH-------------------
Confidence 88999999999999999999999776555999999999999999 4899999999999
Q ss_pred cccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhc-CcEEEEEeccCCCCCCchhhHh
Q psy15051 674 LYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRA-GMKILVEFVPNHSSNKHDWFIK 744 (1065)
Q Consensus 674 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-Gi~vIlDvV~NHts~~~~wf~~ 744 (1065)
|++ ||++|+|+|+|||+.+|+|+.+
T Consensus 194 ----------------------------------------------h~~~Gm~~ilDvV~NHTa~ds~Wl~e 219 (1464)
T TIGR01531 194 ----------------------------------------------HRDWNVLSITDIVFNHTANNSPWLLE 219 (1464)
T ss_pred ----------------------------------------------HHhcCCEEEEEeeecccccCCHHHHh
Confidence 775 9999999999999999999986
No 79
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.15 E-value=2.3e-11 Score=150.31 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK 128 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~ 128 (1065)
++|++++++|+||+ +|||+.||++ |++++ +..+||| ++.+| ..|||+
T Consensus 17 ~tf~~~~~~l~YL~-~LGis~IyLs----------------Pi~~a~~gs~hGY--------dv~D~-------~~idp~ 64 (879)
T PRK14511 17 FTFDDAAELVPYFA-DLGVSHLYLS----------------PILAARPGSTHGY--------DVVDH-------TRINPE 64 (879)
T ss_pred CCHHHHHHHhHHHH-HcCCCEEEEC----------------cCccCCCCCCCCC--------CcCCC-------CCcCCC
Confidence 79999999999999 9999944444 55544 3457999 55555 666668
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccC
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQG 191 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~ 191 (1065)
||+.++|++||+ +|++||+|| +|| |+||++. .+ .+|+||++
T Consensus 65 lGt~e~f~~Lv~aah~~Gi~VI--------lDi-------V~NH~~~----~~---~~n~ww~d 106 (879)
T PRK14511 65 LGGEEGLRRLAAALRAHGMGLI--------LDI-------VPNHMAV----GG---PDNPWWWD 106 (879)
T ss_pred CCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccccC----cC---ccCHHHHH
Confidence 999999999998 699999999 998 9999861 11 26788865
No 80
>KOG2212|consensus
Probab=99.11 E-value=1.7e-09 Score=117.30 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHcCcCEEEeCCCCcCCCC-----CC--CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 604 DYLKELGVETLWLTPFYSGPNG-----DI--GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 604 dYLk~LGvnaI~L~PI~~~~~~-----~~--GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
..|.--|+.+|+.+|+.|+... .| .|.|..| .++.+=|.+|||+.||++|.+-|.|+++|+|++||.
T Consensus 48 ~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~ 121 (504)
T KOG2212|consen 48 RFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMC 121 (504)
T ss_pred hhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhc
Confidence 3777799999999999998422 22 5999998 689999999999999999988888888888876654
No 81
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.07 E-value=7.2e-11 Score=154.20 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=72.6
Q ss_pred cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccc
Q psy15051 49 IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIIC 127 (1065)
Q Consensus 49 ~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~ 127 (1065)
.++|++++++|+||+ +|||+ .+|++ |++++ +..+||| +|.+| +.|||
T Consensus 754 ~~tf~~~~~~l~Yl~-~LGv~---------------~i~ls-Pi~~a~~gs~hGY--------dv~D~-------~~idp 801 (1693)
T PRK14507 754 DFTFADAEAILPYLA-ALGIS---------------HVYAS-PILKARPGSTHGY--------DIVDH-------SQINP 801 (1693)
T ss_pred CCCHHHHHHHhHHHH-HcCCC---------------EEEEC-CCcCCCCCCCCCC--------CCCCC-------CccCc
Confidence 389999999999999 99999 44444 66653 4568999 56665 66667
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCC
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
+||+++||++|++ +|++||+|| +|| |+||++.. ..+|+||++.
T Consensus 802 ~lG~~edf~~Lv~~ah~~Gi~vi--------lDi-------V~NH~~~~-------~~~n~w~~dv 845 (1693)
T PRK14507 802 EIGGEEGFERFCAALKAHGLGQL--------LDI-------VPNHMGVG-------GADNPWWLDV 845 (1693)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccCCC-------ccCCHHHHHH
Confidence 9999999999998 699999999 998 99998611 2578899764
No 82
>KOG2212|consensus
Probab=98.66 E-value=4e-07 Score=99.29 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccccccCchhhhc-ccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc
Q psy15051 17 LSSVRCNQKEWWK-NTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT 94 (1065)
Q Consensus 17 ~~~~~~~~~~w~~-~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~ 94 (1065)
...-....+.||+ ...|-.+|---+ ..|..+. .+|. --|+..+..||..++-.. . |.+
T Consensus 14 ~~~~aq~~t~~~~~R~tmVHLFEWKW-----------~DiA~ECE~FL~-p~G~~gVQVSP~nEn~~~--~-----~~~- 73 (504)
T KOG2212|consen 14 YNFWAQYSTNTQQGRTTIVHLFEWKW-----------VDIALECERFLA-PKGFGGVQVSPPNENVAI--H-----NPF- 73 (504)
T ss_pred HHHHhhcCchhhcCcceEEEEEEeeh-----------HHHHHHHHhhcC-cCCcceeeecCcchhhhh--c-----CCC-
Confidence 3333344567887 455656655444 3566665 4776 888888999998886431 0 111
Q ss_pred ccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 95 TAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 95 ~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|.| -..| .-.|++++.+-|..|+|+.+|+ +.+-|.|++ +|| |+||-+
T Consensus 74 -------rPW-------WeRY---QPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiy--------VDv-------v~NHM~ 121 (504)
T KOG2212|consen 74 -------RPW-------WERY---QPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIY--------VDA-------VINHMC 121 (504)
T ss_pred -------CCc-------eeec---ccceEEeeccCCCHHHHHHHHHHhhccceEEE--------ehh-------hhhhhc
Confidence 111 1111 1123788889999999999997 799999999 898 999954
No 83
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.51 E-value=6.7e-08 Score=123.26 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|.|....++|+||+ +||++ ++|++ |++..+...+.| +|.|| .+|||.|
T Consensus 129 G~~~~w~~~L~~ik-~lGyN---------------~Ihft-PI~~~G~SnS~Y--------si~Dy-------l~idP~~ 176 (1464)
T TIGR01531 129 GPLSEWEPRLRVAK-EKGYN---------------MIHFT-PLQELGGSNSCY--------SLYDQ-------LQLNQHF 176 (1464)
T ss_pred CCHHHHHHHHHHHH-HcCCC---------------EEEeC-CCccCCCCCCCc--------cccch-------hhcChhh
Confidence 99999999999999 99999 55555 666444456777 55555 5555678
Q ss_pred ----CcHHHHHHHHH-HHhC-CCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCc
Q psy15051 130 ----FYMKKFKHRID-AKND-SLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV 194 (1065)
Q Consensus 130 ----Gt~~df~~Li~-ah~~-gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~ 194 (1065)
|+.+||++||+ +|++ ||++| +|+ |+|||+ ..|+||++-|.
T Consensus 177 ~~~~~~~~d~~~lV~~~h~~~Gm~~i--------lDv-------V~NHTa----------~ds~Wl~eHPE 222 (1464)
T TIGR01531 177 KSQKDGKNDVQALVEKLHRDWNVLSI--------TDI-------VFNHTA----------NNSPWLLEHPE 222 (1464)
T ss_pred cccCCcHHHHHHHHHHHHHhcCCEEE--------EEe-------eecccc----------cCCHHHHhChH
Confidence 59999999997 6886 99999 998 999976 78888887554
No 84
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.48 E-value=5.6e-07 Score=82.78 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccccCCCeEEEc----cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCc
Q psy15051 983 VYKDLTTLRATSGAVRMGDYKIST----PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSG 1058 (1065)
Q Consensus 983 ~~r~Li~LRk~~paL~~G~~~~l~----~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~ 1058 (1065)
+||+||+|||++|+|+.|++..+. .++.++++.|..+++.++|++|+|+++++++ .....+++.++....
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~~~~~~------~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDEPVTVP------EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-EEEE------TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCCcEEcc------CCCCCeEEEcCCCcc
Confidence 699999999999999999887665 2456888888889999999999999999998 235567777765543
No 85
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.47 E-value=4.7e-07 Score=104.52 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=76.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCC------HHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGT------MEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt------~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
...++|..++++|+|.|+++|+.+-+.....|.+.|...+||.+.. .++++++|.+++
T Consensus 23 ~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~---------------- 86 (423)
T PF14701_consen 23 DWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAE---------------- 86 (423)
T ss_pred HHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHH----------------
Confidence 7799999999999999999999999876688999999999999843 479999999992
Q ss_pred cccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh
Q psy15051 672 HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK 744 (1065)
Q Consensus 672 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~ 744 (1065)
++.||..|.|+|.|||+.+++|..+
T Consensus 87 ------------------------------------------------~~~~ll~~~DvV~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 87 ------------------------------------------------KKYGLLSMTDVVLNHTANNSPWLRE 111 (423)
T ss_pred ------------------------------------------------HHcCceEEEEEeeccCcCCChHHHh
Confidence 6889999999999999999999987
No 86
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=3.7e-07 Score=108.62 Aligned_cols=76 Identities=28% Similarity=0.301 Sum_probs=60.5
Q ss_pred cccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccccc
Q psy15051 51 DLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 51 dl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
+|.....-||||+ +|||..+|.| |+++. +...|||+ |+|++.| +|.+
T Consensus 17 tF~~A~~~l~yl~-~LGIShLY~S----------------PIftA~pGStHGYD--VvD~t~I-------------nPeL 64 (889)
T COG3280 17 TFADARALLDYLA-DLGISHLYLS----------------PIFTARPGSTHGYD--VVDPTEI-------------NPEL 64 (889)
T ss_pred CHHHHHHhhHHHH-hcCchheecc----------------chhhcCCCCCCCcc--CCCcccc-------------Chhh
Confidence 6778888899999 9999955555 45443 34579994 5555554 5599
Q ss_pred CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|+.+.|..|++ +|.+||.+| +|| ||||-.
T Consensus 65 GG~egl~rLvaalk~~GlGlI--------~DI-------VPNHMa 94 (889)
T COG3280 65 GGEEGLERLVAALKSRGLGLI--------VDI-------VPNHMA 94 (889)
T ss_pred cChHHHHHHHHHHHhcCCceE--------EEe-------cccchh
Confidence 99999999998 599999999 999 999964
No 87
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.00 E-value=0.00021 Score=84.46 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcccccC----CC-eEEEccCCcEEEEE-EEcC--------CcEEEEEEECCCCcEEEEcCCCccC-
Q psy15051 980 HYSVYKDLTTLRATSGAVRM----GD-YKISTPNNYVFILT-RTEG--------STSVYLIINLNSRTETVDLSDCIEN- 1044 (1065)
Q Consensus 980 l~~~~r~Li~LRk~~paL~~----G~-~~~l~~~~~viaf~-R~~~--------~~~vlVv~N~s~~~~~v~l~~~~~~- 1044 (1065)
..++-..|-++|+++|-|+. ++ |..+..++.++-|. |+.. .+++++|.|.+.++.+|++.+...+
T Consensus 700 q~~fnlaLR~fR~~~PWLr~NL~~~Drf~~i~~~~~TlfyglR~~P~~~d~~~~~~~v~~v~hMgG~p~tv~l~dwL~ld 779 (811)
T PF14872_consen 700 QTAFNLALRQFRRAHPWLRHNLRGGDRFNRISDDGRTLFYGLRTNPQEEDTSEDPEQVAMVAHMGGEPMTVTLGDWLQLD 779 (811)
T ss_pred HHHHHHHHHHHhhcCchhhhcccccccccccCCCCeEEEEEecCCCCcccccCCCccEEEEEecCCCceEecHHHhhhhh
Confidence 44677899999999998853 33 34344444444343 4432 3689999999999999998876532
Q ss_pred CCcEEEEEccCC
Q psy15051 1045 GGDVAIFTSSVN 1056 (1065)
Q Consensus 1045 ~~~~~v~~~s~~ 1056 (1065)
-.+|++.+.|.-
T Consensus 780 ~~~W~~aiasPg 791 (811)
T PF14872_consen 780 LSEWQVAIASPG 791 (811)
T ss_pred hhhheEeecCCC
Confidence 356777776643
No 88
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=97.14 E-value=0.0032 Score=74.80 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccc
Q psy15051 300 QPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLK 363 (1065)
Q Consensus 300 q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~ 363 (1065)
.-|||+.||-|| .-++++-|-=++.|+||+|+|-+.=
T Consensus 356 GQdlnhq~P~VR---------------------------AILLEmQRRK~n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 356 GQDLNHQNPVVR---------------------------AILLEMQRRKINTGADGIRVDGGQD 392 (811)
T ss_pred cccccccChHHH---------------------------HHHHHHHHhhcccCCceeEeccccc
Confidence 359999999998 4467777776788999999997643
No 89
>KOG3625|consensus
Probab=97.11 E-value=0.00039 Score=84.34 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=75.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCC------CHHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFG------TMEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~G------t~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
....+|.-+|+-|.|.|+++|+.+-+.....|...|-..+++.+. +.||.++||+.+|
T Consensus 143 eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~---------------- 206 (1521)
T KOG3625|consen 143 EWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLK---------------- 206 (1521)
T ss_pred hhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHH----------------
Confidence 459999999999999999999999876557899999999999996 7899999999993
Q ss_pred cccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhh
Q psy15051 672 HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKS 745 (1065)
Q Consensus 672 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~ 745 (1065)
++-+|--|-|+|+|||+.+++|..+-
T Consensus 207 ------------------------------------------------rewnvlsi~DvV~NHtAnns~WlleH 232 (1521)
T KOG3625|consen 207 ------------------------------------------------REWNVLSITDVVYNHTANNSKWLLEH 232 (1521)
T ss_pred ------------------------------------------------hhcCeeeeehhhhhccccCCchhHhC
Confidence 56689999999999999999998773
No 90
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.63 E-value=0.0026 Score=76.18 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=50.5
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCCCC--------CCCCcCCCCccc----CCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGPNG--------DIGYDISNHTEV----GKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~--------~~GY~~~dy~~i----dp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
.-|.+..+-+|++|||..||-|-+-+... .-||+-+|-|.+ .-.||+.+||+.-|+++|+.||+||.|
T Consensus 587 ~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~GiqviaD 666 (809)
T PF02324_consen 587 VVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIAD 666 (809)
T ss_dssp HHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhhh
Confidence 45777889999999999999998886432 269999987665 567999999999999999999999999
Q ss_pred ccc
Q psy15051 665 KQT 667 (1065)
Q Consensus 665 vv~ 667 (1065)
+|+
T Consensus 667 wVp 669 (809)
T PF02324_consen 667 WVP 669 (809)
T ss_dssp E-T
T ss_pred hch
Confidence 998
No 91
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.02 E-value=0.098 Score=51.97 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=47.0
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-+++||++|+++|-+.-=- .+.+-|.|+..-..+|.++ .+-|+++|++||++||+|+.=+.+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~---h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKC---HGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHhCCCEEEEEccc---ccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 345789999999999774311 1112366777778899998 788899999998877777765554
No 92
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=95.34 E-value=0.018 Score=69.34 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred hcccceEEEecccccCcCCC-CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc--------
Q psy15051 28 WKNTVIYQILVPSFKDSNND-GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK-------- 98 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~-g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~-------- 98 (1065)
....||||=|- -|++-... -.-+-+=|.+..+-+| ++||| ++||. |.|+|...
T Consensus 562 LDSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk-~wGIT---------------sFemA-PQY~Ss~D~tFLDSii 623 (809)
T PF02324_consen 562 LDSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFK-SWGIT---------------SFEMA-PQYRSSTDGTFLDSII 623 (809)
T ss_dssp HHT-EEEE----TTB---SSGGGSHHHHHHHTHHHHH-HTTEE---------------EEE-----S-B--SSSSHHHHT
T ss_pred hhcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHH-hcCcc---------------eeeeC-cceecCCCCcchhhHh
Confidence 34678998653 23322111 1133455777789999 99999 55555 65554322
Q ss_pred ccCccceeecccccCCCccccccccccccccCcHHHHHHHHHH-HhCCCEEE
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDA-KNDSLHLI 149 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~a-h~~gi~vi 149 (1065)
.-||+ ..|=+++- ..-..+||+.+||+.-|+| |+.||+||
T Consensus 624 qNGYA--FtDRYDLg---------~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 624 QNGYA--FTDRYDLG---------MSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp T-SSS--BS-TT-SS---------SSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred hcCcc--ccchhhhc---------CCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 24775 33433333 3446689999999999997 99999999
No 93
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=95.14 E-value=0.022 Score=66.61 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=57.7
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|.|..-.++|..++ ++|.+-|+.+|...-+ ..+..|. |.|+..+++-+. -+..=
T Consensus 19 G~~~~W~~~l~~~~-~~GYNmIHftPlq~~G----------------~S~S~YS--I~Dql~~~~~~~-------~~~~~ 72 (423)
T PF14701_consen 19 GPFSDWEKHLKVIS-EKGYNMIHFTPLQERG----------------ESNSPYS--IYDQLKFDPDFF-------PPGKE 72 (423)
T ss_pred CCHhHHHHHHHHHH-HcCCcEEEecccccCC----------------CCCCCcc--ccchhhcChhhc-------CCCcc
Confidence 89999999999999 9999955555544433 2334453 666666664210 00111
Q ss_pred CcHHHHHHHHH-H-HhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FYMKKFKHRID-A-KNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt~~df~~Li~-a-h~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.++++++++|. + ++.||..| .|| |.|||+
T Consensus 73 ~~~~~v~~~v~~~~~~~~ll~~--------~Dv-------V~NHtA 103 (423)
T PF14701_consen 73 STFEDVKEFVKEAEKKYGLLSM--------TDV-------VLNHTA 103 (423)
T ss_pred ccHHHHHHHHHHHHHHcCceEE--------EEE-------eeccCc
Confidence 34689999996 4 78999999 998 999986
No 94
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=94.93 E-value=0.025 Score=57.93 Aligned_cols=63 Identities=14% Similarity=0.326 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHhcccccCCCe-------EEEcc----CCcEEEEEEEcC----------CcEEEEEEECCCCcEEEE
Q psy15051 979 SHYSVYKDLTTLRATSGAVRMGDY-------KISTP----NNYVFILTRTEG----------STSVYLIINLNSRTETVD 1037 (1065)
Q Consensus 979 ~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~----~~~viaf~R~~~----------~~~vlVv~N~s~~~~~v~ 1037 (1065)
...++|+.|++||+++|.|+.++- .+... .+++|++.-.++ -+.++||+|.+.++++++
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~~ 121 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTFT 121 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEEE
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEEE
Confidence 467899999999999999988763 33332 358999998863 257999999999999999
Q ss_pred cCCC
Q psy15051 1038 LSDC 1041 (1065)
Q Consensus 1038 l~~~ 1041 (1065)
++.+
T Consensus 122 ~~~~ 125 (168)
T PF11852_consen 122 VPGL 125 (168)
T ss_dssp TGGG
T ss_pred cCCc
Confidence 9864
No 95
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=94.26 E-value=0.084 Score=47.40 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=31.6
Q ss_pred EEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCcc
Q psy15051 1004 ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIE 1043 (1065)
Q Consensus 1004 ~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~ 1043 (1065)
...+.++||+|.|..+++.++|++|.+++++++++....+
T Consensus 4 hf~P~~gvYvYfR~~~~~tVmVilN~n~~~~~ldl~ry~E 43 (78)
T PF10438_consen 4 HFAPQDGVYVYFRYYDGKTVMVILNKNDKEQTLDLKRYAE 43 (78)
T ss_dssp E---BTTEEEEEEEESSEEEEEEEE-SSS-EEEEGGGGHH
T ss_pred eECccCCEEEEEEEcCCCEEEEEEcCCCCCeEEcHHHHHH
Confidence 3456788999999999999999999999999999986653
No 96
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.89 E-value=0.33 Score=55.48 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHc-CCCeeeecCcccc
Q psy15051 302 HCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKR-GVDGFGMDSVLKL 364 (1065)
Q Consensus 302 dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l 364 (1065)
=||-.+|+|| ++|+++++=-+++ .|||+-+|=.-+.
T Consensus 130 ~lnP~~PeVr---------------------------~~i~~~v~Eiv~~YdvDGIhlDdy~yp 166 (311)
T PF02638_consen 130 WLNPGHPEVR---------------------------DYIIDIVKEIVKNYDVDGIHLDDYFYP 166 (311)
T ss_pred EECCCCHHHH---------------------------HHHHHHHHHHHhcCCCCeEEecccccc
Confidence 4788999998 7889988888864 9999999954443
No 97
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=93.84 E-value=0.064 Score=49.80 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred cCCcEEEEEEEc--CCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1007 PNNYVFILTRTE--GSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1007 ~~~~viaf~R~~--~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+++|+||.|.. ++ .+|||+||+++....+..-...-++.++.+++|+...++
T Consensus 7 ~~~~v~af~R~~~~~~-~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~ 61 (95)
T PF02806_consen 7 NENNVIAFERKDKGDD-RVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYG 61 (95)
T ss_dssp ESSSEEEEEETTTETT-EEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEE
T ss_pred CCCCEEEEEEcCCCCC-EEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEEC
Confidence 467899999984 44 899999999983333332222236888888888665544
No 98
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=91.73 E-value=0.92 Score=51.69 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhcCCce---eecccccccccccccchhhhhhccccccccccccCccccCCCCCCCcc---Ccccc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQK---ISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA---GNQNR 714 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~V---IlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 714 (1065)
|.+.++++++++++.++||-+ ++|........ .....|+. ++...
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~-----------------------------~~~f~~d~~~FPd~~~ 70 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQ-----------------------------WCDFEFDPDRFPDPEG 70 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCc-----------------------------ceeeEECcccCCCHHH
Confidence 367899999999999999875 33432210000 00111111 12234
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDV 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~ 790 (1065)
.....|++|+++++-+.| +++.+++.|.+..+ .+|++... +|.+. ....|.. +|+.||++++++.+.
T Consensus 71 ~i~~l~~~G~~~~~~~~P-~i~~~~~~~~e~~~-----~g~~v~~~--~g~~~-~~~~w~g~~~~~Dftnp~a~~w~~~~ 141 (308)
T cd06593 71 MLSRLKEKGFKVCLWINP-YIAQKSPLFKEAAE-----KGYLVKKP--DGSVW-QWDLWQPGMGIIDFTNPDACKWYKDK 141 (308)
T ss_pred HHHHHHHCCCeEEEEecC-CCCCCchhHHHHHH-----CCeEEECC--CCCee-eecccCCCcccccCCCHHHHHHHHHH
Confidence 444469999999999887 67767777777652 35565432 23311 1122333 999999999999988
Q ss_pred HHhc
Q psy15051 791 VQSF 794 (1065)
Q Consensus 791 lk~~ 794 (1065)
++++
T Consensus 142 ~~~~ 145 (308)
T cd06593 142 LKPL 145 (308)
T ss_pred HHHH
Confidence 8763
No 99
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.26 E-value=0.6 Score=46.45 Aligned_cols=24 Identities=0% Similarity=-0.027 Sum_probs=19.8
Q ss_pred cccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 125 IICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 125 i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
..|.++ -+=|+++|+ ||++||+|+
T Consensus 37 ~hp~L~-~Dllge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 37 RHPGLK-RDLLGEQVEACHERGIRVP 61 (132)
T ss_pred CCCCCC-cCHHHHHHHHHHHCCCEEE
Confidence 356677 677799998 699999998
No 100
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=1.6 Score=51.29 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CCCcccccchhhhhhhhHhhhCCCCcCCCCCCC
Q psy15051 46 NDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTD 78 (1065)
Q Consensus 46 ~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~ 78 (1065)
..+..+=..+...|+.|+ .||+|++|+.-..+
T Consensus 57 ~~v~~~~~el~~~ld~l~-~ln~NTv~~qV~~~ 88 (418)
T COG1649 57 SRVLFQRQELKDILDDLQ-KLNFNTVYPQVWND 88 (418)
T ss_pred CcccccHHHHHHHHHHHH-HcCCceeEEEEecC
Confidence 334455566777799999 99999666544333
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=86.68 E-value=4.1 Score=46.40 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=34.6
Q ss_pred cHHhhhHHHHHcCc--CEEEeCCCCcCCCCCCCCcCCCCcccCC-CCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGV--ETLWLTPFYSGPNGDIGYDISNHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGv--naI~L~PI~~~~~~~~GY~~~dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.|.+.++.++++|| +.|+|=-=+... . .+| ..|+ +|- +.++||+++|++|+|+++=+.
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~----g~f-~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETC---Y----GDF-DFDPTKFP---DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCcccc---C----Ccc-ccChhhCC---CHHHHHHHHHHCCCeEEEEEC
Confidence 67778888899884 577764322111 1 122 3443 554 478999999666665555443
No 102
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=86.30 E-value=0.9 Score=50.34 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=40.9
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCC--C--CCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKD--F--GTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~--~--Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
..+.++.+|++|+|+|-|.--.+... ..+|. + ...+.|+++|+.|+++||+||+|+-.
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~-----------~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ-----------EPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS-----------TTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc-----------CCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 46779999999999999864332111 11111 2 23689999999999999999999654
No 103
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=86.13 E-value=3.1 Score=47.54 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=39.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCC-CCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGD-IGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~-~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.+.|+.|+++|+|+|.+-=-.....-| .-+.+..-+......+ +.+=|+.+|++|||+||+|..=+
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE
Confidence 78889999999999999874221110000 0111111111111111 25679999999999999776443
No 104
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.76 E-value=5.6 Score=45.33 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCcccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKL 364 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l 364 (1065)
.-+||.||+++ +...+.++.+++.|||||-+|....+
T Consensus 125 ~~~Dftnp~a~---------------------------~w~~~~~~~~~~~Gid~~~~D~~e~~ 161 (308)
T cd06593 125 GIIDFTNPDAC---------------------------KWYKDKLKPLLDMGVDCFKTDFGERI 161 (308)
T ss_pred ccccCCCHHHH---------------------------HHHHHHHHHHHHhCCcEEecCCCCCC
Confidence 34689999997 56777788888999999999976554
No 105
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=81.69 E-value=8.5 Score=44.75 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=40.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-------CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-------DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-------~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-||.+..+++|.+++-= .+ ...|.+.+..|=.+.. .|=|.+|+++||+-|.++||.||-.+.+
T Consensus 19 ~ik~~Id~ma~~KlN~lh~Hl-tD--d~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 19 SIKRTIDAMAYNKLNVLHWHI-TD--SQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred HHHHHHHHHHHhCCcEEEEeE-Ec--CCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC
Confidence 677888999999999988730 00 0012222222211111 1117999999999996666666666555
No 106
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=81.14 E-value=1.7 Score=52.80 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=42.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCH
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTM 644 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~ 644 (1065)
++.+-++.+++.|++.|+|+|+.....++.+|.+.+=++.||-|=++
T Consensus 28 dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l 74 (497)
T PRK14508 28 GAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDL 74 (497)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCh
Confidence 88999999999999999999999987666799999999999888554
No 107
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=79.25 E-value=4.1 Score=42.17 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=46.2
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCC--CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIG--YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~G--Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-..+.+.++|++|+++|.|.= +++.+ +.+..++.-.-..+..+-+..+.++|.++||+|++-+-+
T Consensus 21 ~W~~~~~~m~~~GidtlIlq~-----~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQW-----TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEEE-----eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 447889999999999998761 11122 334444222222366788999999999999999999776
No 108
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=77.57 E-value=8.9 Score=45.28 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhccc-ccCCCeEEEccC--CcEEEEEEE--cCCcEEEEEEECCCC
Q psy15051 981 YSVYKDLTTLRATSGA-VRMGDYKISTPN--NYVFILTRT--EGSTSVYLIINLNSR 1032 (1065)
Q Consensus 981 ~~~~r~Li~LRk~~pa-L~~G~~~~l~~~--~~viaf~R~--~~~~~vlVv~N~s~~ 1032 (1065)
.+.+++.+++.|+... ++.|++..+... ....++... .+.+.+++++.....
T Consensus 322 ~~~~~~~ia~YK~~r~li~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~~~~~ 378 (394)
T PF02065_consen 322 LAAVKEQIAFYKSIRPLIQSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFRLLSS 378 (394)
T ss_dssp HHHHHHHHHHHHHCHHHHHHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEETSS-
T ss_pred HHHHHHHHHHHHhHHHHhcCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEEcccC
Confidence 4577888888887643 467888777542 244455433 455667767766543
No 109
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.26 E-value=3 Score=47.51 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCcc
Q psy15051 300 QPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVL 362 (1065)
Q Consensus 300 q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~ 362 (1065)
..-+|+.||+++ +...+.++..+ +.|||||-+|..-
T Consensus 129 ~~~~Dftnp~a~---------------------------~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 129 AAVLDFTNPEAV---------------------------DWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred cceEeCCCHHHH---------------------------HHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 345789999997 66778888887 7899999999744
No 110
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=77.10 E-value=11 Score=43.16 Aligned_cols=117 Identities=12% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC---cccchhh
Q psy15051 641 FGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG---NQNRAES 717 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 717 (1065)
|.+.++++++++...++||-+ |++..+..+.. .+ ......|+.. +-....+
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~--d~i~lD~~~~~---------------~~---------~~~~f~~d~~~FPdp~~mi~ 73 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPL--DVIVQDWFYWP---------------KQ---------GWGEWKFDPERFPDPKAMVR 73 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCc--cEEEEechhhc---------------CC---------CceeEEEChhhCCCHHHHHH
Confidence 358999999999999999865 33331100000 00 0012222211 2234444
Q ss_pred hhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHHHHh
Q psy15051 718 MEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDVVQS 793 (1065)
Q Consensus 718 ~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~lk~ 793 (1065)
..|++|++|++-+.| +++..++.|.+...+ ++++.... |.+. ...|.. +|+.||+++++..+.+++
T Consensus 74 ~L~~~G~kv~~~i~P-~v~~~~~~y~e~~~~-----g~~v~~~~--g~~~--~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 74 ELHEMNAELMISIWP-TFGPETENYKEMDEK-----GYLIKTDR--GPRV--TMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHHHCCCEEEEEecC-CcCCCChhHHHHHHC-----CEEEEcCC--CCee--eeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 469999999996654 456667777776633 45554432 2211 122333 999999999988777654
No 111
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=77.03 E-value=14 Score=42.56 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccC---------C---CCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVG---------K---DFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~id---------p---~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
-|.+-||.+...++|.++|--. +. ..|......|-.+. . .+=|.+|+++||+-|.++||.||-.+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLt-D~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLT-DD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEee-cC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 6778899999999999988431 10 01222222221111 1 12278999999999977788777777
Q ss_pred cc
Q psy15051 666 QT 667 (1065)
Q Consensus 666 v~ 667 (1065)
.+
T Consensus 96 D~ 97 (329)
T cd06568 96 DM 97 (329)
T ss_pred CC
Confidence 66
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=76.43 E-value=7.1 Score=44.44 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=41.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccC-----------CCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVG-----------KDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~id-----------p~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-|.+-||.+..+++|.++|-=- ++ ..|.+....|-.+- ..+=|.+|+++||+-|.++||.||-.+.
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~-D~--~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD 93 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLT-DD--QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEID 93 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeee-cC--CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEecc
Confidence 6778899999999999977311 10 00222222221111 1122689999999999777777766666
Q ss_pred c
Q psy15051 667 T 667 (1065)
Q Consensus 667 ~ 667 (1065)
+
T Consensus 94 ~ 94 (303)
T cd02742 94 M 94 (303)
T ss_pred c
Confidence 5
No 113
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.07 E-value=15 Score=42.92 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=40.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCC---------CCcCCC--CCCCCcCCCC-------cccCC--CCCCHHHHHHHHHHHHhc
Q psy15051 598 GIIEKIDYLKELGVETLWLTP---------FYSGPN--GDIGYDISNH-------TEVGK--DFGTMEDFDELVKLVHSK 657 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~P---------I~~~~~--~~~GY~~~dy-------~~idp--~~Gt~edfk~LV~~aH~~ 657 (1065)
-|.+-||.+..+++|.++|-- +-..|. ..-+|...+. ....+ .+=|.+|+++||+-|.++
T Consensus 19 ~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 98 (357)
T cd06563 19 EVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAER 98 (357)
T ss_pred HHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHHHc
Confidence 577789999999999998842 100110 0001111110 01111 112689999999999777
Q ss_pred CCceeecccc
Q psy15051 658 GKQKISQKQT 667 (1065)
Q Consensus 658 Gi~VIlDvv~ 667 (1065)
||+||-.+.+
T Consensus 99 gI~VIPEID~ 108 (357)
T cd06563 99 GITVIPEIDM 108 (357)
T ss_pred CCEEEEecCC
Confidence 7766666655
No 114
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=73.44 E-value=6.3 Score=43.75 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.8
Q ss_pred HhhhHHHHHcCcCEEEeC
Q psy15051 600 IEKIDYLKELGVETLWLT 617 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~ 617 (1065)
.+.|.-||+-|||.|-|-
T Consensus 66 qD~~~iLK~~GvNyvRlR 83 (403)
T COG3867 66 QDALQILKNHGVNYVRLR 83 (403)
T ss_pred HHHHHHHHHcCcCeEEEE
Confidence 446889999999998763
No 115
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=73.35 E-value=7.1 Score=49.37 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC----CCCCCCCcCCCCcccCCCCCCHHHHHH
Q psy15051 574 NNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG----PNGDIGYDISNHTEVGKDFGTMEDFDE 649 (1065)
Q Consensus 574 ~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~----~~~~~GY~~~dy~~idp~~Gt~edfk~ 649 (1065)
.+-|+|||. .+.+-++.+++.|.+.+.|+|+... +..+..|.+.+=+.+||-|=.++++-+
T Consensus 157 ~~~GIGDfg---------------dl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e 221 (695)
T PRK11052 157 HNWGIGDFG---------------DLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVED 221 (695)
T ss_pred CCCCeecHH---------------HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhh
Confidence 355789999 8899999999999999999999853 344578999999999999988777766
Q ss_pred HH
Q psy15051 650 LV 651 (1065)
Q Consensus 650 LV 651 (1065)
+.
T Consensus 222 ~~ 223 (695)
T PRK11052 222 FQ 223 (695)
T ss_pred hh
Confidence 54
No 116
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.46 E-value=20 Score=41.07 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCCce---eecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCc---ccc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQK---ISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN---QNR 714 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~V---IlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 714 (1065)
|-+.+++.++|++..++||.+ ++|... +.... -.....+..|+... -..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w-----------~~~~~--------------~~~~~~~f~wd~~~FPdp~~ 74 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYW-----------FGKDI--------------DKGHMGNLDWDRKAFPDPAG 74 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechh-----------hcCcc--------------cCCceeeeEeccccCCCHHH
Confidence 347899999999999999863 233211 00000 00001122232111 133
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDV 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~ 790 (1065)
+....|++|++|++-+.+ ++..+++.+.+...+ .+++.+ ..+|.+. ....|.. +|+.||++++++.+.
T Consensus 75 mi~~L~~~G~k~~~~v~P-~v~~~~~~y~e~~~~-----g~l~~~-~~~~~~~-~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 75 MIADLAKKGVKTIVITEP-FVLKNSKNWGEAVKA-----GALLKK-DQGGVPT-LFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred HHHHHHHcCCcEEEEEcC-cccCCchhHHHHHhC-----CCEEEE-CCCCCEe-eeeccCCCccccCCCCHHHHHHHHHH
Confidence 444459999999998765 445566777776533 343322 2222211 1122322 899999999999888
Q ss_pred HHhc
Q psy15051 791 VQSF 794 (1065)
Q Consensus 791 lk~~ 794 (1065)
++++
T Consensus 147 ~~~~ 150 (317)
T cd06598 147 YKKL 150 (317)
T ss_pred HHHh
Confidence 7764
No 117
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=70.24 E-value=4.9 Score=45.43 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=28.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.....++++|+||+|+|-+-- |||..- -+++..+.+ +.||.||+|+-.
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~------------------vdp~~n-Hd~CM~~~~---~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS------------------VDPSKN-HDECMSAFA---DAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES---------------------TTS---HHHHHHHH---HTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEEE------------------eCCCCC-HHHHHHHHH---hCCCEEEEecCC
Confidence 446678899999999997754 333331 144444444 459999999886
No 118
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=70.13 E-value=5.5 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=16.3
Q ss_pred EEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1011 VFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1011 viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
|-+-.|..++..+++++|+++++++++|+.
T Consensus 2 Vev~~R~~~~~~y~F~~N~s~~~~~v~l~~ 31 (58)
T PF08533_consen 2 VEVTVRENDGGRYLFLLNFSDEPQTVTLPE 31 (58)
T ss_dssp EEEEE----ETTEEEEEE-SSS-EE----T
T ss_pred eEEEEEEcCCCEEEEEEECCCCCEEEEcCC
Confidence 345567778889999999999999999853
No 119
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=70.10 E-value=6.5 Score=45.24 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=37.2
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-++.||+.|+|+|-|=- +..|.. .-+-+.++..+|.++++++||+|+||+=+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 5678999999999997742 222211 44556899999999999999999999776
No 120
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=69.65 E-value=6.5 Score=46.44 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=29.2
Q ss_pred CCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCcccccc
Q psy15051 299 HQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKLYE 366 (1065)
Q Consensus 299 ~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l~~ 366 (1065)
.|--||++||+|+ +++.+.+.-.+ +.|||.|.+|....+..
T Consensus 156 ~~~vLD~~~pev~---------------------------~~l~~~i~~ll~~~gidYiK~D~n~~~~~ 197 (394)
T PF02065_consen 156 NQYVLDLSNPEVR---------------------------DYLFEVIDRLLREWGIDYIKWDFNRDITE 197 (394)
T ss_dssp TBEEB-TTSHHHH---------------------------HHHHHHHHHHHHHTT-SEEEEE-TS-TTS
T ss_pred cceEEcCCCHHHH---------------------------HHHHHHHHHHHHhcCCCEEEeccccCCCC
Confidence 4455999999997 78888776655 56999999999887754
No 121
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=69.39 E-value=4.8 Score=49.12 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=35.4
Q ss_pred CCCCCCC-CCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCcccCCCCCCHHHHH
Q psy15051 575 NDGIGDL-RGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHTEVGKDFGTMEDFD 648 (1065)
Q Consensus 575 ~d~~Gdl-~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~~idp~~Gt~edfk 648 (1065)
+-|+||| . .+.+-++.+++.|++.++|.|+++... ..++|.+.+=+++||-|=+++++.
T Consensus 11 ~~GIGDfg~---------------dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~ 71 (496)
T PF02446_consen 11 SWGIGDFGD---------------DLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALP 71 (496)
T ss_dssp --SS--SSH---------------HHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHH
T ss_pred CCceecHHH---------------HHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhh
Confidence 3478999 6 889999999999999999999998754 335999999999999996655443
No 122
>smart00632 Aamy_C Aamy_C domain.
Probab=69.20 E-value=14 Score=33.31 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCC-CcEEEEEc
Q psy15051 1008 NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG-GDVAIFTS 1053 (1065)
Q Consensus 1008 ~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~-~~~~v~~~ 1053 (1065)
++++|+|.| +++.+|++|.+...+++.+... +| |.+..+++
T Consensus 7 ~~~~laF~R---g~~g~VaiN~~~~~~~~~~~t~--lp~G~Y~d~l~ 48 (81)
T smart00632 7 GDNQIAFER---GSKGFVAINRSDSDLTITLQTS--LPAGTYCDVIS 48 (81)
T ss_pred CCeEEEEEC---CCeEEEEEECCCCceEEEEeec--CCCcceEEEec
Confidence 345999999 3778999999988877776532 34 55555555
No 123
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.99 E-value=6.2 Score=46.56 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=39.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCC-------CCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGD-------IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~-------~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
.+.+.|+.|+.||||+|+..=.....+-| .++. .-...++ +.-+=+..+|++|||+||+|+-=
T Consensus 65 el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~---~g~DpLa~~I~~AHkr~l~v~aW 134 (418)
T COG1649 65 ELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVD---PGYDPLAFVIAEAHKRGLEVHAW 134 (418)
T ss_pred HHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCC---CCCChHHHHHHHHHhcCCeeeec
Confidence 78999999999999999875322221110 1111 0001122 23366889999999999987643
No 124
>PRK10658 putative alpha-glucosidase; Provisional
Probab=67.16 E-value=22 Score=45.04 Aligned_cols=117 Identities=14% Similarity=0.249 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCc---ccchhhhh
Q psy15051 643 TMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN---QNRAESME 719 (1065)
Q Consensus 643 t~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 719 (1065)
+.+++.++++++.++||-+ |++..+ +. |++.. ......|+... -..+....
T Consensus 281 ~e~~v~~~~~~~r~~~iP~--d~i~lD------~~-w~~~~-----------------~~~~f~wd~~~FPdp~~mi~~L 334 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPL--HVFHFD------CF-WMKEF-----------------QWCDFEWDPRTFPDPEGMLKRL 334 (665)
T ss_pred CHHHHHHHHHHHHHcCCCc--eEEEEc------hh-hhcCC-----------------ceeeeEEChhhCCCHHHHHHHH
Confidence 4788999999999999963 333211 11 11000 00112222111 12333445
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHHHHhc
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDVVQSF 794 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~lk~~ 794 (1065)
|++|+++++-+.| +++.+++.|.+..++ +|++... +|.+ .....|.. +|+.||+++++..+.++++
T Consensus 335 ~~~G~k~~~~i~P-~i~~~s~~f~e~~~~-----gy~vk~~--~G~~-~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l 404 (665)
T PRK10658 335 KAKGLKICVWINP-YIAQKSPLFKEGKEK-----GYLLKRP--DGSV-WQWDKWQPGMAIVDFTNPDACKWYADKLKGL 404 (665)
T ss_pred HHCCCEEEEeccC-CcCCCchHHHHHHHC-----CeEEECC--CCCE-eeeeecCCCceeecCCCHHHHHHHHHHHHHH
Confidence 9999999998766 456677888887643 4565432 3431 11123443 9999999999998887764
No 125
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=66.77 E-value=28 Score=40.07 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=40.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcc----------------------cCCCCCCHHHHHHHHHHHH
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE----------------------VGKDFGTMEDFDELVKLVH 655 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~----------------------idp~~Gt~edfk~LV~~aH 655 (1065)
-|.+-|+.+..+++|.++|-= -+ .|++....+-. ....+=|.+|+|+||+-|.
T Consensus 18 ~ik~~id~ma~~K~N~lhlHl-tD----~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 18 FLKDIIKTMSWYKMNDLQLHL-ND----NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred HHHHHHHHHHHcCCceEEEee-cC----CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 577788999999999998820 00 11111111100 1111227999999999997
Q ss_pred hcCCceeecccc
Q psy15051 656 SKGKQKISQKQT 667 (1065)
Q Consensus 656 ~~Gi~VIlDvv~ 667 (1065)
++||.||-.+.+
T Consensus 93 ~rgI~vIPEID~ 104 (326)
T cd06564 93 DRGVNIIPEIDS 104 (326)
T ss_pred HcCCeEeccCCC
Confidence 777777666665
No 126
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=65.77 E-value=9 Score=44.25 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=38.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC----------CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK----------DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp----------~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-|+.+..++.|.++|--- +. . .|.+....|-.+.. .+=|.+|+++||+-|+++||+||-.+.+
T Consensus 19 ~ik~~id~ma~~k~N~lhlhl~-D~-~-~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~ 95 (351)
T PF00728_consen 19 TIKRLIDQMAYYKLNVLHLHLS-DD-Q-GFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDT 95 (351)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEE-SS-T-CB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEEe-cC-C-CCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccC
Confidence 6788899999999999988421 11 0 01111111111000 0225899999999996666666665554
No 127
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=65.14 E-value=21 Score=41.39 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC---cccchh
Q psy15051 640 DFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG---NQNRAE 716 (1065)
Q Consensus 640 ~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 716 (1065)
.|.+.+++++++++..++||-+=. +..+. .++ .......|+.. +-..+.
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~--i~lD~------~~~--------------------~~~~~f~~d~~~FPdp~~mi 70 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDV--IWLDI------EHT--------------------DGKRYFTWDKKKFPDPEKMQ 70 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceE--EEECh------HHh--------------------CCCCceEeCcccCCCHHHHH
Confidence 356799999999999999986422 21110 000 00011222211 223344
Q ss_pred hhhhhcCcEEEEEeccCCCCC-CchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHHH
Q psy15051 717 SMEHRAGMKILVEFVPNHSSN-KHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDVV 791 (1065)
Q Consensus 717 ~~~H~~Gi~vIlDvV~NHts~-~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~l 791 (1065)
...|++|++|++-+.|--... ..+-+.+..+. .+++... +|.+. ....|.+ +|+.||+++++..+.+
T Consensus 71 ~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~-----g~~vk~~--~g~~~-~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 71 EKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK-----GYLVKNS--DGGDF-EGWCWPGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred HHHHHCCCEEEEEecCceecCCCCHHHHHHHHC-----CeEEECC--CCCEE-EEEECCCCcCCccCCChhHHHHHHHHH
Confidence 445999999999986543322 24667765532 4554332 22210 0112222 8999999999999988
Q ss_pred Hhc
Q psy15051 792 QSF 794 (1065)
Q Consensus 792 k~~ 794 (1065)
++.
T Consensus 143 ~~~ 145 (339)
T cd06603 143 SYD 145 (339)
T ss_pred HHH
Confidence 774
No 128
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=64.48 E-value=9 Score=45.53 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcc-cCCCCCCH---HHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE-VGKDFGTM---EDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~-idp~~Gt~---edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-+.++|+.|+|+|-|. +||+..-.+. .+|.+=.. .-+.+.|+.|.++||+|++|+-.
T Consensus 76 ~~~~~~ik~~G~n~VRiP---------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~ 138 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIP---------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHG 138 (407)
T ss_pred hhHHHHHHHcCCcEEEcc---------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecc
Confidence 667899999999999874 4555531111 56776422 35667799999999999999665
No 129
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.44 E-value=11 Score=41.21 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=38.6
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~ 668 (1065)
+.+-|+++|+||+++|.|+- |. .+. +.++..+||+.++++|++|+-.+=.+
T Consensus 73 ~~~Yl~~~k~lGf~~IEiS~---------G~--~~i--------~~~~~~rlI~~~~~~g~~v~~EvG~K 123 (237)
T TIGR03849 73 FDEYLNECDELGFEAVEISD---------GS--MEI--------SLEERCNLIERAKDNGFMVLSEVGKK 123 (237)
T ss_pred HHHHHHHHHHcCCCEEEEcC---------Cc--cCC--------CHHHHHHHHHHHHhCCCeEecccccc
Confidence 34446699999999999974 21 111 15889999999999999999886653
No 130
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=61.64 E-value=8.1 Score=44.91 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.9
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|=|.+|+++||+ |.++||.|| |-+| +|-|+.
T Consensus 66 ~YT~~di~eiv~yA~~rgI~vI------PEID--------~PGH~~ 97 (348)
T cd06562 66 VYTPEDVKEIVEYARLRGIRVI------PEID--------TPGHTG 97 (348)
T ss_pred eECHHHHHHHHHHHHHcCCEEE------Eecc--------CchhhH
Confidence 459999999999 999999999 7788 688864
No 131
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.62 E-value=58 Score=37.30 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=40.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccC-----CCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVG-----KDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~id-----p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-||.+..+++|.+++-= .+. ..|.+....|=.+- ..+=|.+|+++||+-|.++||.||-.+.+
T Consensus 19 ~ik~~Id~ma~~KlN~lh~Hl-tDd--~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHL-TDD--QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEE-ecC--CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecC
Confidence 677889999999999777631 010 01222222221110 11237899999999996666666666555
No 132
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=61.15 E-value=38 Score=39.21 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCcc---Ccc--cc
Q psy15051 640 DFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA---GNQ--NR 714 (1065)
Q Consensus 640 ~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 714 (1065)
.|.+.++++++++...++||-+=. +..+ ..|+. ......|+. .+. ..
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~--i~lD------~~~~~--------------------~~~~f~~d~~~FPdp~~~~ 70 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDV--QWND------IDYMD--------------------RRRDFTLDPVRFPGLKMPE 70 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcce--EEEC------ccccc--------------------CccceecccccCCCccHHH
Confidence 345789999999999999986422 2111 00000 001112221 122 33
Q ss_pred hhhhhhhcCcEEEEEeccCCCCC----CchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSN----KHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRS 786 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~----~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~ 786 (1065)
+....|++|+||++-+.+.-.-. ..+-+.+... .++++... +|.+. ....|.+ +|+.||+++++
T Consensus 71 mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~-----~g~~v~~~--~g~~~-~~~~w~g~~~~~Dftnp~a~~w 142 (339)
T cd06602 71 FVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLE-----MDVFIKND--DGSPY-IGKVWPGYTVFPDFLNPNTQEW 142 (339)
T ss_pred HHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHH-----CCeEEECC--CCCEE-EEEeCCCCCcCcCCCCHHHHHH
Confidence 34445999999999876543322 3455666553 24555432 23311 1122222 89999999999
Q ss_pred HHHHHHhc
Q psy15051 787 QKDVVQSF 794 (1065)
Q Consensus 787 l~~~lk~~ 794 (1065)
..+.++++
T Consensus 143 w~~~~~~~ 150 (339)
T cd06602 143 WTDEIKDF 150 (339)
T ss_pred HHHHHHHH
Confidence 98887763
No 133
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=60.96 E-value=26 Score=40.10 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=43.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcc--cCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE--VGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~--idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.|+.|++-|+|+|-|- ++...+.-.|....-.+ +...-....|+++|++++|++||++|.=+|.
T Consensus 14 ~~~~~~~~i~~t~lNavVID--vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~ 83 (316)
T PF13200_consen 14 RLDKLLDLIKRTELNAVVID--VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV 83 (316)
T ss_pred HHHHHHHHHHhcCCceEEEE--EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE
Confidence 56778899999999999552 12222112233222111 1111122579999999999999999888776
No 134
>PLN02950 4-alpha-glucanotransferase
Probab=59.73 E-value=15 Score=47.90 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=57.0
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-C---C-CC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-G---D-IG 628 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~---~-~G 628 (1065)
+.|-.-.|+-+++ +.....+-|+|||. ++.+-+|.+++.|.+.|+|+|+.+... + + .+
T Consensus 257 ~~~R~~Gi~~~l~--SLrS~~s~GIGDf~---------------dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsP 319 (909)
T PLN02950 257 MPWRGAGVAVPVF--SIRSEEDVGVGEFL---------------DLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYP 319 (909)
T ss_pred CCccceEEEEecc--cCCCCCCCCeeCHH---------------HHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCC
Confidence 3344444544433 22222234689999 999999999999999999999988642 1 2 38
Q ss_pred CcCCCCcccCCCCCCHHHHHH
Q psy15051 629 YDISNHTEVGKDFGTMEDFDE 649 (1065)
Q Consensus 629 Y~~~dy~~idp~~Gt~edfk~ 649 (1065)
|.+.+=++.||-|=+++++-+
T Consensus 320 Ys~~S~falNPlyI~l~~l~~ 340 (909)
T PLN02950 320 YSSLSVFALHPLYLRVQALSE 340 (909)
T ss_pred cCcccccccChhhcCHHHHHh
Confidence 999999999999988766643
No 135
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=59.58 E-value=5.1 Score=45.99 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=36.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcC--CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSG--PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~--~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
-..+.|..+|++|+|+|..-=.... +.. | .-||. ...|+++|++.|+++||.|||-.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g--~~df~-------g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--G--QFDFT-------GNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--T--B---S-------GGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--C--ccccc-------chhhHHHHHHHHHHcCcEEEecc
Confidence 4588999999999999976321111 111 1 33332 24899999999999999999873
No 136
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=59.46 E-value=54 Score=37.60 Aligned_cols=28 Identities=18% Similarity=-0.014 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCeeeecCccccc
Q psy15051 338 ITLLLCILEFWLKRGVDGFGMDSVLKLY 365 (1065)
Q Consensus 338 ~~~~~~~l~~Wl~~GvDGfRlDav~~l~ 365 (1065)
+++++++++--++.|+|.+-+|=|.|=-
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCC
Confidence 3899999999999999999999888764
No 137
>PLN02635 disproportionating enzyme
Probab=58.44 E-value=16 Score=44.87 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=51.3
Q ss_pred EEEEecccccCcCCCCCCCCCCcccchhhhccccccc-HHhhhHHHHHcCcCEEEeCCCCcCCC----CCCCCcCCCCcc
Q psy15051 562 IYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLG-IIEKIDYLKELGVETLWLTPFYSGPN----GDIGYDISNHTE 636 (1065)
Q Consensus 562 IYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~G-l~~kLdYLk~LGvnaI~L~PI~~~~~----~~~GY~~~dy~~ 636 (1065)
---+++-++. .+-|+|||. . ..+-++.+++.|.+.++|+|+..... ++.+|.+.+=++
T Consensus 31 Gvll~l~SLp--s~~GIGDfg---------------~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa 93 (538)
T PLN02635 31 GILLHPTSLP--GPYGIGDLG---------------DEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANC 93 (538)
T ss_pred EEEEccccCC--CCCCCcchH---------------HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccc
Confidence 3345555554 235688987 4 34789999999999999999988633 567899999889
Q ss_pred cCCCCCCHHHH
Q psy15051 637 VGKDFGTMEDF 647 (1065)
Q Consensus 637 idp~~Gt~edf 647 (1065)
.||-|=+++++
T Consensus 94 ~NPlyI~le~L 104 (538)
T PLN02635 94 GNTLLISLEEL 104 (538)
T ss_pred cChhhcCHHhh
Confidence 99888665544
No 138
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.12 E-value=28 Score=39.94 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=34.5
Q ss_pred cHHhhhHHHHHcCc--CEEEeCCCCcCCCCCCCCcCCCCcccCC-CCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGV--ETLWLTPFYSGPNGDIGYDISNHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGv--naI~L~PI~~~~~~~~GY~~~dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.+-++.+++.|| ++|||-+=+.... |- -..-+..|+ +|- +.++||+++|++|+||++-+.
T Consensus 30 ~v~~~~~~~r~~~iP~d~i~ld~~~~~~~---~~-~~~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 30 ALLEFIDKCREHDIPCDSFHLSSGYTSIE---GG-KRYVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred HHHHHHHHHHHcCCCeeEEEEeccccccC---CC-ceeeeecCcccCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 45666778888775 7888753111110 00 001133443 443 677999999666666665443
No 139
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=58.06 E-value=11 Score=41.46 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNR 670 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~ 670 (1065)
.+.+-|+++|+|||++|.++= |.- +. +.++..++|+.+.+.|++|+-.+=.+++
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSd---------Gti--~l--------~~~~r~~~I~~~~~~Gf~v~~EvG~K~~ 138 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISD---------GTI--DL--------PEEERLRLIRKAKEEGFKVLSEVGKKDP 138 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE-----------SSS-------------HHHHHHHHHHHCCTTSEEEEEES-SSH
T ss_pred hHHHHHHHHHHcCCCEEEecC---------Cce--eC--------CHHHHHHHHHHHHHCCCEEeecccCCCc
Confidence 456678999999999999973 211 11 1588999999999999999988766443
No 140
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=57.89 E-value=25 Score=40.35 Aligned_cols=65 Identities=22% Similarity=0.446 Sum_probs=38.6
Q ss_pred cHHhhhHHHHHcCc--CEEEeCCCCcC-CCCCCCCcC-CCCcccCC-CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGV--ETLWLTPFYSG-PNGDIGYDI-SNHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGv--naI~L~PI~~~-~~~~~GY~~-~dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.++.+++.|| ++|||- .... ....+||.. .+ +..|+ +| .+.++||+++|++|++|++-+..
T Consensus 24 ~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~F---Pdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 24 KVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERY---PGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred HHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhC---CCHHHHHHHHHHCCCEEEEEecC
Confidence 66777888888654 778885 3211 111123321 12 24444 34 35789999997777777776554
No 141
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.54 E-value=24 Score=42.53 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=46.0
Q ss_pred cHHhhhHHHHHcCcCEEEeC-------C--CCcCC-----CCCCCCcCCCCcccCCCCC-------------CHHHHHHH
Q psy15051 598 GIIEKIDYLKELGVETLWLT-------P--FYSGP-----NGDIGYDISNHTEVGKDFG-------------TMEDFDEL 650 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~-------P--I~~~~-----~~~~GY~~~dy~~idp~~G-------------t~edfk~L 650 (1065)
-|.+-||.+...++|.++|- | |-..| ..+.++...+...+.|.+| |.+|+++|
T Consensus 23 ~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~ei 102 (445)
T cd06569 23 TVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYIEI 102 (445)
T ss_pred HHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHHHHH
Confidence 67778888999999988873 1 11111 1112222222222222222 78999999
Q ss_pred HHHHHhcCCceeecccc
Q psy15051 651 VKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 651 V~~aH~~Gi~VIlDvv~ 667 (1065)
|+-|+++||.||-.+.+
T Consensus 103 v~yA~~rgI~VIPEID~ 119 (445)
T cd06569 103 LKYAKARHIEVIPEIDM 119 (445)
T ss_pred HHHHHHcCCEEEEccCC
Confidence 99999999999999988
No 142
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.37 E-value=17 Score=41.69 Aligned_cols=31 Identities=19% Similarity=0.651 Sum_probs=26.9
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+=|.+|+++|++ |.++||+|| |-+| +|-|+.
T Consensus 64 ~yT~~di~elv~yA~~rgI~vI------PEId--------~PGH~~ 95 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVV------PEID--------VPGHAS 95 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEE------Eeec--------CccchH
Confidence 468999999999 999999999 7788 678863
No 143
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=54.07 E-value=19 Score=45.68 Aligned_cols=76 Identities=17% Similarity=0.356 Sum_probs=55.5
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-CC---C-CCCc
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-NG---D-IGYD 630 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~---~-~GY~ 630 (1065)
|....|+-+++ +.....+-|+|||. .+.+-+|.+++.|.+.|+|+|+.... .+ + .+|.
T Consensus 59 ~R~aGill~l~--SLrS~~s~GIGDfg---------------dL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYs 121 (745)
T PLN03236 59 WKGSGMALPVF--SLRSAESVGAGDFG---------------DLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYS 121 (745)
T ss_pred hhhheeeeccc--cCCCCCCCCcccHH---------------HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcC
Confidence 44444543433 23233345689998 78999999999999999999998864 22 3 4899
Q ss_pred CCCCcccCCCCCCHHHHH
Q psy15051 631 ISNHTEVGKDFGTMEDFD 648 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk 648 (1065)
+.+=++.||-|=+++.+.
T Consensus 122 p~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 122 SLSVHALHPLYLKLKELV 139 (745)
T ss_pred cccccccChHHcCHHHhh
Confidence 999999999997766553
No 144
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=53.41 E-value=14 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=27.2
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.+=|.+|+++|++ |.++||.|| |-+| +|-|+.
T Consensus 70 ~~YT~~di~elv~yA~~rgI~vI------PEiD--------~PGH~~ 102 (329)
T cd06568 70 GYYTQEDYKDIVAYAAERHITVV------PEID--------MPGHTN 102 (329)
T ss_pred CcCCHHHHHHHHHHHHHcCCEEE------EecC--------CcHHHH
Confidence 3568999999999 999999999 7788 677763
No 145
>PRK10426 alpha-glucosidase; Provisional
Probab=53.20 E-value=71 Score=40.33 Aligned_cols=65 Identities=20% Similarity=0.405 Sum_probs=36.6
Q ss_pred cHHhhhHHHHHcC--cCEEEeCCCCcC-CCCCCCCcCC-CCcccCC-CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELG--VETLWLTPFYSG-PNGDIGYDIS-NHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LG--vnaI~L~PI~~~-~~~~~GY~~~-dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.++.+++.| +++|||-- ... ....+|.... || ..|+ +| .+.++||+++|++|+|+++=+..
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~~-~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P 291 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWNW-KWDSERY---PQLDSRIKQLNEEGIQFLGYINP 291 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEec-ccccccccccccccccc-eEChhhC---CCHHHHHHHHHHCCCEEEEEEcC
Confidence 4667778888877 68899941 111 0001221111 22 2232 23 35788999997777777666554
No 146
>PLN02635 disproportionating enzyme
Probab=53.06 E-value=95 Score=38.30 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.1
Q ss_pred CCCcccccchh-hhhhhhHhhhCCC
Q psy15051 46 NDGIGDLRGKN-VRKRYLELTLGLD 69 (1065)
Q Consensus 46 ~~g~Gdl~gi~-~kL~yl~~~LGv~ 69 (1065)
.-|||||-... .-++.++ +.|.+
T Consensus 42 ~~GIGDfg~~a~~fvd~la-~~G~~ 65 (538)
T PLN02635 42 PYGIGDLGDEAFRFLDWLA-STGCS 65 (538)
T ss_pred CCCCcchHHHHHHHHHHHH-HcCCC
Confidence 46899998766 5689999 99988
No 147
>PLN03059 beta-galactosidase; Provisional
Probab=51.56 E-value=19 Score=46.16 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC---CCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK---DFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp---~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
..++|.-+|++|+|+|..==+ | ++-.+.| .|....|+.++++.|++.||.||+=
T Consensus 61 W~d~L~k~Ka~GlNtV~tYV~-------W-----n~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 61 WPDLIQKAKDGGLDVIQTYVF-------W-----NGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHHcCCCeEEEEec-------c-----cccCCCCCeeeccchHHHHHHHHHHHHcCCEEEec
Confidence 478899999999999964211 1 1111111 2355899999999999999999986
No 148
>KOG3625|consensus
Probab=50.60 E-value=13 Score=47.01 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=50.5
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|-|..-..+|.-.| +-|.+-|..+|..+ -......|. +.|.-.+++-| .+.+.+
T Consensus 139 Gpl~eWeprL~va~-e~gYNmIHfTPlqe----------------lG~S~S~YS--l~dql~~~~~~------~~~~~k- 192 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAK-ESGYNMIHFTPLQE----------------LGLSRSCYS--LADQLELNPDF------SRPNRK- 192 (1521)
T ss_pred CChhhhhHHHHHHH-HcCCceEeeeeHHH----------------hccCCCccc--hHhhhhcChhh------hccCCC-
Confidence 55566667788888 88888555555444 222334453 55555555210 111111
Q ss_pred CcHHHHHHHHH-HH-hCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FYMKKFKHRID-AK-NDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt~~df~~Li~-ah-~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
-++||.++||+ .| +-+|--| -|| |.|||+
T Consensus 193 ~s~eDV~~lV~~l~rewnvlsi--------~Dv-------V~NHtA 223 (1521)
T KOG3625|consen 193 YSFEDVGQLVEKLKREWNVLSI--------TDV-------VYNHTA 223 (1521)
T ss_pred CCHHHHHHHHHHHHhhcCeeee--------ehh-------hhhccc
Confidence 17999999997 43 4477667 888 999997
No 149
>PRK10658 putative alpha-glucosidase; Provisional
Probab=49.53 E-value=16 Score=46.11 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCc
Q psy15051 302 HCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSV 361 (1065)
Q Consensus 302 dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav 361 (1065)
=+||.||++| +...+.++..++.|||||-.|.-
T Consensus 385 ~~Dftnp~ar---------------------------~W~~~~~~~l~d~Gvdgfw~D~g 417 (665)
T PRK10658 385 IVDFTNPDAC---------------------------KWYADKLKGLLDMGVDCFKTDFG 417 (665)
T ss_pred eecCCCHHHH---------------------------HHHHHHHHHHHhcCCcEEEecCC
Confidence 4689999997 55667777778999999999954
No 150
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.28 E-value=20 Score=41.17 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=17.8
Q ss_pred HHHHHHH-HHHHHcCCCeeeecCccc
Q psy15051 339 TLLLCIL-EFWLKRGVDGFGMDSVLK 363 (1065)
Q Consensus 339 ~~~~~~l-~~Wl~~GvDGfRlDav~~ 363 (1065)
+...+.+ +..++.|||||=+|.-..
T Consensus 144 ~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 144 EWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 4455655 555678999999996554
No 151
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=47.61 E-value=25 Score=41.22 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=39.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCC--HHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGT--MEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt--~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-+.+.|+-+|++|+|+|-|..+.=. .++|.=|. .+.+.++|+.|+++||+|||-+..
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~-------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWS-------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT 69 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHH-------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT
T ss_pred HHHHHHHHHHHcCCCEEEEEEechh-------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEecc
Confidence 4578899999999999998765211 22222221 366999999999999999997654
No 152
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=47.44 E-value=20 Score=33.37 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=27.2
Q ss_pred EccCCcEEEEEEEcCCcEEEEEE-ECCC---CcEEEEcCC-CccCCCcEEEEEccCC
Q psy15051 1005 STPNNYVFILTRTEGSTSVYLII-NLNS---RTETVDLSD-CIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1005 l~~~~~viaf~R~~~~~~vlVv~-N~s~---~~~~v~l~~-~~~~~~~~~v~~~s~~ 1056 (1065)
++.+++.+||.|-..+.++|+|+ |.+. ...+++++. .+.....+..+++...
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~ 58 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTS 58 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEE
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCE
Confidence 45677899999986555555555 5544 366777773 3344455555555443
No 153
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=46.67 E-value=82 Score=36.44 Aligned_cols=117 Identities=14% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC---cccchhhh
Q psy15051 642 GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG---NQNRAESM 718 (1065)
Q Consensus 642 Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 718 (1065)
-+.+++++++++..++||-+ |++..+.. |+ + ......|+.. +-..+...
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~--d~i~lD~~------~~---------~-----------~~~~f~~d~~~fPdp~~m~~~ 72 (339)
T cd06604 21 YPEEEVREIADEFRERDIPC--DAIYLDID------YM---------D-----------GYRVFTWDKERFPDPKELIKE 72 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCc--ceEEECch------hh---------C-----------CCCceeeccccCCCHHHHHHH
Confidence 37899999999999999965 44431100 00 0 0011122211 12334444
Q ss_pred hhhcCcEEEEEeccCCC-CCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHHHHh
Q psy15051 719 EHRAGMKILVEFVPNHS-SNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDVVQS 793 (1065)
Q Consensus 719 ~H~~Gi~vIlDvV~NHt-s~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~lk~ 793 (1065)
.|++|+++++-+.+.-. ....+.+.+..++ ++++... +|.+ .....|.+ +|+.||+++++..+.+++
T Consensus 73 l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~-----g~~v~~~--~g~~-~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06604 73 LHEQGFKVVTIIDPGVKVDPGYDVYEEGLEN-----DYFVKDP--DGEL-YIGRVWPGLSAFPDFTNPKVREWWGSLYKK 144 (339)
T ss_pred HHHCCCEEEEEEeCceeCCCCChHHHHHHHC-----CeEEECC--CCCE-EEEEecCCCccccCCCChHHHHHHHHHHHH
Confidence 59999999987655221 1234566665532 4555432 2331 11122322 899999999999888776
Q ss_pred c
Q psy15051 794 F 794 (1065)
Q Consensus 794 ~ 794 (1065)
+
T Consensus 145 ~ 145 (339)
T cd06604 145 F 145 (339)
T ss_pred H
Confidence 4
No 154
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=46.51 E-value=18 Score=41.42 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHH-HHcCCCeeeecCccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFW-LKRGVDGFGMDSVLK 363 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W-l~~GvDGfRlDav~~ 363 (1065)
.-+||.||+++ +...+.++.. .+.|||||=+|+-.+
T Consensus 131 ~~~Dftnp~a~---------------------------~ww~~~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 131 GVLDLTNPAAR---------------------------DWFKQVIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred eeeecCCHHHH---------------------------HHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 34789999997 4455555544 578999999997543
No 155
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=45.87 E-value=39 Score=40.45 Aligned_cols=59 Identities=19% Similarity=0.403 Sum_probs=32.2
Q ss_pred cHHhhhHHHHHcCc--CEEEeCCCCcCCCCCCCCcCCCCcccCC-CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGV--ETLWLTPFYSGPNGDIGYDISNHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGv--naI~L~PI~~~~~~~~GY~~~dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+-++.+++.|| ++|+|-.-+..... +| ..|+ +| .+.++|++.+|++|+++++-+..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~-------~f-~~d~~~F---Pd~~~~~~~l~~~G~~~~~~~~P 105 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYG-------DF-TWDPERF---PDPKQMIDELHDQGIKVVLWVHP 105 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTB-------TT--B-TTTT---TTHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHHHcCCCccceecccccccccc-------cc-ccccccc---cchHHHHHhHhhCCcEEEEEeec
Confidence 55677777777554 56666443222111 22 3343 33 38899999997777766666554
No 156
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=45.57 E-value=35 Score=39.38 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=17.1
Q ss_pred cCcHHHHHHHHH-HHhCCCEEE
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
+-+.++..++.+ |++.||+|+
T Consensus 54 ~~~~~~~~~~akrak~~Gm~vl 75 (332)
T PF07745_consen 54 YNDLEDVIALAKRAKAAGMKVL 75 (332)
T ss_dssp TTSHHHHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHHHHCCCeEE
Confidence 467888888886 799999999
No 157
>KOG1065|consensus
Probab=44.22 E-value=1.3e+02 Score=38.48 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=81.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCc---eeeccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQ---KISQKQTKNRSHQL 674 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~---VIlDvv~~~~~~~~ 674 (1065)
++.+. |++-+|-=++ ++|+..-|..---.|++..++|..|+...+.||- .+.|++. |....
T Consensus 278 ~vvqQ--y~q~iG~P~m------------~pYWslGf~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDy--Md~yk 341 (805)
T KOG1065|consen 278 GVVQQ--YLQLIGRPAM------------PPYWSLGFQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDY--MDGYK 341 (805)
T ss_pred HHHHH--HHHHhCCccC------------CchhhccceecccccccHHHHHHHHHHHHHcCCCcceeeeehhh--hhccc
Confidence 55554 8888775433 4555555554444678899999999999999996 3344443 11111
Q ss_pred ccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc-hhhHhhhccCCCCC
Q psy15051 675 YCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH-DWFIKSAQKIDPYT 753 (1065)
Q Consensus 675 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~-~wf~~~~~~~~~~~ 753 (1065)
+. ..+..|-.....+.+.+ |++|+|+|+=+-|+-..... .-+.+..+ .
T Consensus 342 DF-------------------------Tvd~~~fp~~~~fv~~L-h~~G~kyvliidP~is~~~~y~~y~~g~~-----~ 390 (805)
T KOG1065|consen 342 DF-------------------------TVDKVWFPDLKDFVDDL-HARGFKYVLIIDPFISTNSSYGPYDRGVA-----K 390 (805)
T ss_pred ce-------------------------eeccccCcchHHHHHHH-HhCCCeEEEEeCCccccCccchhhhhhhh-----h
Confidence 10 11111111122233333 99999988776543221111 11222211 1
Q ss_pred cceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHHHHhcCC
Q psy15051 754 NYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDVVQSFPL 796 (1065)
Q Consensus 754 d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~lk~~~~ 796 (1065)
+.++.. ..|.+.....-|.+ +++.||.+..+..+.++.+..
T Consensus 391 ~v~I~~--~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~ 435 (805)
T KOG1065|consen 391 DVLIKN--REGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHD 435 (805)
T ss_pred ceeeec--ccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcc
Confidence 222221 23442223444554 899999999999999987654
No 158
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=43.73 E-value=34 Score=38.69 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=35.5
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCC----CCCCCcC--------CCCcccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPN----GDIGYDI--------SNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~----~~~GY~~--------~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
..-|+.+|+-|||.|++.=+.+... +-.|+.+ .|+..++|.| -+.+.+.|+.|.++||.+.|=
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~lv 107 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAALV 107 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEEEE
Confidence 3448889999999999965544321 1123333 3666677665 678999999999999988543
No 159
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=43.47 E-value=1.1e+02 Score=35.25 Aligned_cols=115 Identities=10% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhcCCce---eecccccccccccccchhhhhhccccccccccccCccccCCCCCCCcc---Ccccc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQK---ISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA---GNQNR 714 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~V---IlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 714 (1065)
|.+.++++++++...+++|-+ ++|... + + ......|+. .+-..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~-----------~---------~-----------~~~~f~~d~~~FPdp~~ 68 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHY-----------M---------D-----------SYRLFTWDPYRFPEPKK 68 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhh-----------h---------C-----------CCCceeechhcCCCHHH
Confidence 467899999999999998853 223211 0 0 001122221 12233
Q ss_pred hhhhhhhcCcEEEEEeccCCCC-CCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSS-NKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKD 789 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts-~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~ 789 (1065)
.....|++|+++++-+.|--.. ...+-|.+..+ .++++... +|.+. ....|.+ +|+.||+++++..+
T Consensus 69 ~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~-----~~~~v~~~--~g~~~-~~~~w~G~~~~~Dftnp~a~~ww~~ 140 (317)
T cd06600 69 LIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMD-----KGKFCEIE--SGELF-VGKMWPGTTVYPDFTNPDTREWWAG 140 (317)
T ss_pred HHHHHHHCCCEEEEEeeccccCCCCChHHHHHHH-----CCEEEECC--CCCeE-EEeecCCCccccCCCChHHHHHHHH
Confidence 4444599999999977554321 22344555442 24555432 22211 1122332 89999999999998
Q ss_pred HHHhc
Q psy15051 790 VVQSF 794 (1065)
Q Consensus 790 ~lk~~ 794 (1065)
.++++
T Consensus 141 ~~~~~ 145 (317)
T cd06600 141 LFSEW 145 (317)
T ss_pred HHHHH
Confidence 88774
No 160
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.78 E-value=43 Score=38.15 Aligned_cols=61 Identities=25% Similarity=0.233 Sum_probs=43.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCC--CCcCCCCCCCCcCCCCcccC--CCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTP--FYSGPNGDIGYDISNHTEVG--KDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~P--I~~~~~~~~GY~~~dy~~id--p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-++.++.+|+|.++|-= -|+. .++-.+- ...=|.+|+++|++-|.++||.||=.+.+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~---------~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~ 82 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPY---------EGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQT 82 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceec---------CCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCC
Confidence 578889999999999998821 1111 1111111 11226899999999999999999998877
No 161
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.47 E-value=71 Score=37.04 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCceeecccc
Q psy15051 645 EDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 645 edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.++||+++|++|+||++=+..
T Consensus 85 Pdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 85 PNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred CCHHHHHHHHHHCCCEEEEEecC
Confidence 37899999998888888875554
No 162
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=41.64 E-value=25 Score=45.15 Aligned_cols=38 Identities=24% Similarity=0.093 Sum_probs=29.7
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH-HHHHHHHHcCCCeeeecCccccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL-CILEFWLKRGVDGFGMDSVLKLY 365 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Wl~~GvDGfRlDav~~l~ 365 (1065)
.=+||.||++| +.-. +...++++.|||||=.|+--...
T Consensus 380 a~~DFtnp~~r---------------------------~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 380 AFPDFTNPDAR---------------------------EWWASDKKKNLLDLGVDGFWNDMNEPEP 418 (772)
T ss_pred cccCCCCHHHH---------------------------HHHHHHHHhHHHhcCccEEEccCCCCcc
Confidence 44689999997 4555 57788999999999998765543
No 163
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.44 E-value=30 Score=39.71 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH-HHHHHcCCCeeeecCcccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL-EFWLKRGVDGFGMDSVLKL 364 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Wl~~GvDGfRlDav~~l 364 (1065)
.-+||.||+.+ +...+.+ +..++.|||||=+|.-...
T Consensus 124 ~~~Dftnp~a~---------------------------~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 124 RFYDATNPEAR---------------------------EYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred cccCCCCHHHH---------------------------HHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 45789999996 4444433 4566889999999988643
No 164
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.06 E-value=37 Score=32.88 Aligned_cols=42 Identities=29% Similarity=0.516 Sum_probs=30.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
-+.+-++.+.++|+.++|+.|= ++-+++++.|++.||+++-.
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 4567789999999999999982 55678888888999998855
No 165
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=39.87 E-value=1.1e+02 Score=37.40 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=38.4
Q ss_pred hhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCC
Q psy15051 588 KRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGK 659 (1065)
Q Consensus 588 ~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi 659 (1065)
+.|.+.|+ +.|.+.++-.|+.||.-..|===+...-++.-=+.-|++.....|++ -+..||++.|++|+
T Consensus 301 a~Yfd~t~-e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPs--giE~li~~I~e~Gl 369 (687)
T COG3345 301 AYYFDFTE-EEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS--GIEELIEAIAENGL 369 (687)
T ss_pred eeeecCCH-HHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecchhhccc--cHHHHHHHHHHcCC
Confidence 44445554 47889999999999877655211111000000123455665566644 24567777766666
No 166
>TIGR03356 BGL beta-galactosidase.
Probab=39.34 E-value=40 Score=40.38 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=41.4
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCC-CC-----CHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKD-FG-----TMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~-~G-----t~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-..+.|+-||+||++++-++=- +..|.|. -| ..+-++++|++|.++||++|+++.
T Consensus 55 ~y~eDi~l~~~~G~~~~R~si~--------------Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 55 RYEEDVALMKELGVDAYRFSIA--------------WPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred hHHHHHHHHHHcCCCeEEcccc--------------hhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 6678899999999999977522 2223332 12 356788999999999999999965
No 167
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=37.53 E-value=1.2e+02 Score=25.16 Aligned_cols=38 Identities=8% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEc
Q psy15051 1000 GDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDL 1038 (1065)
Q Consensus 1000 G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l 1038 (1065)
|.|+.+.. .+++.|+...+++.++++.|.+.++..++-
T Consensus 1 g~f~nls~-~dlv~ysyek~g~k~viaanvgke~ke~sg 38 (64)
T PF09083_consen 1 GKFKNLSN-KDLVMYSYEKNGQKIVIAANVGKEPKEISG 38 (64)
T ss_dssp SEEEE--B-TTEEEEEEEETTEEEEEEEE-SSS-EEEEE
T ss_pred Cccccccc-cceEEEEeecCCcEEEEEeccCCCcccccC
Confidence 34555543 457778888888999999999999887764
No 168
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=37.36 E-value=58 Score=35.08 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=38.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~ 668 (1065)
.+.+-|.+.++||+++|.|+- |.-+. +.++.++||+.+-+.|..|.-.+=.+
T Consensus 91 kvdeyl~e~~~lGfe~iEIS~---------G~i~m----------~~eek~~lIe~a~d~Gf~vlsEvGkk 142 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEISN---------GTIPM----------STEEKCRLIERAVDEGFMVLSEVGKK 142 (258)
T ss_pred cHHHHHHHHHHcCccEEEecC---------Ceeec----------chHHHHHHHHHHHhcccEEehhhccc
Confidence 345568899999999999863 21111 25899999999999999888776653
No 169
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.11 E-value=71 Score=37.76 Aligned_cols=65 Identities=20% Similarity=0.047 Sum_probs=46.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceee
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS 663 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIl 663 (1065)
.-.+-++-+|+.|+..|-|+--++..-.-|.=..++|..++... ..+=+++|+++|+++||++-+
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE
Confidence 44556789999999999888765532111222345666666555 347899999999999999988
No 170
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=34.28 E-value=70 Score=35.94 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.1
Q ss_pred CcHHHHHHHHH----HHhCCCEEE
Q psy15051 130 FYMKKFKHRID----AKNDSLHLI 149 (1065)
Q Consensus 130 Gt~~df~~Li~----ah~~gi~vi 149 (1065)
|...|++..++ |++.||||+
T Consensus 98 gGnnD~~k~ieiakRAk~~GmKVl 121 (403)
T COG3867 98 GGNNDLKKAIEIAKRAKNLGMKVL 121 (403)
T ss_pred CCcchHHHHHHHHHHHHhcCcEEE
Confidence 66667776663 578899999
No 171
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.82 E-value=29 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=27.4
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.+=|.+|+++|++ |.++||.|| |-+| +|-|+.
T Consensus 67 ~~yT~~di~elv~yA~~rgI~vi------PEiD--------~PGH~~ 99 (303)
T cd02742 67 GFYTYAQLKDIIEYAAARGIEVI------PEID--------MPGHST 99 (303)
T ss_pred CeECHHHHHHHHHHHHHcCCEEE------Eecc--------chHHHH
Confidence 3568999999999 899999999 7788 688864
No 172
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=32.28 E-value=35 Score=40.76 Aligned_cols=61 Identities=23% Similarity=0.416 Sum_probs=46.6
Q ss_pred ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC
Q psy15051 560 TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK 639 (1065)
Q Consensus 560 ~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp 639 (1065)
..-|+|++|+|.. | -+.|-||++|-|++| .||.
T Consensus 412 eaG~~IyIDDFGT------G--------------------YSnL~YLq~L~VDaL---------------------KIDK 444 (524)
T COG4943 412 EAGHEIYIDDFGT------G--------------------YSNLHYLQSLPVDAL---------------------KIDK 444 (524)
T ss_pred hcCCeEEEccCcC------c--------------------chhHHHHhhCCccce---------------------eccH
Confidence 4578999999954 2 344779999988888 5565
Q ss_pred CC----CC----HHHHHHHHHHHHhcCCceeecccc
Q psy15051 640 DF----GT----MEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 640 ~~----Gt----~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+| |+ .--+.++|+-||..||++|..-|-
T Consensus 445 sFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVE 480 (524)
T COG4943 445 SFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVE 480 (524)
T ss_pred HHHHhhccCcccchhHHHHHHHHHHcCCcEEeeccc
Confidence 55 33 336789999999999999999775
No 173
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.74 E-value=35 Score=39.84 Aligned_cols=32 Identities=19% Similarity=0.576 Sum_probs=27.4
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.+=|.+|+++|++ |.++||+|| |-+| +|-|+.
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VI------PEID--------~PGH~~ 113 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVI------PEID--------MPGHAL 113 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEE------EecC--------CchhHH
Confidence 3558999999998 899999999 7788 688863
No 174
>PTZ00445 p36-lilke protein; Provisional
Probab=31.40 E-value=74 Score=34.33 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=39.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCC-----CCCCCcCCCCcccCCCCCC--HHHHHHHHHHHHhcCCceeec
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPN-----GDIGYDISNHTEVGKDFGT--MEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~-----~~~GY~~~dy~~idp~~Gt--~edfk~LV~~aH~~Gi~VIlD 664 (1065)
....-.+.|++.||.+|-+ +... ..-||+-.+ +-+..+++ .++|++|+.++.+.||+|++-
T Consensus 30 ~~~~~v~~L~~~GIk~Va~----D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIAS----DFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred HHHHHHHHHHHcCCeEEEe----cchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 3344457899999999943 3321 012554443 33344432 367999999999999999864
No 175
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.35 E-value=93 Score=33.60 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcC--CCCcccCCCCCCHHHHHHHHHHHHhcCCceee
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDI--SNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS 663 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~--~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIl 663 (1065)
+.+-.+.|+++|+..|.|+|.+..... .|.- .+|..-+-.-=+.++++++.+.+.++|++|++
T Consensus 147 i~~ia~~l~~l~~~~~~llpyh~~g~~--Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 147 MQQALDVLIPLGIKQIHLLPFHQYGEP--KYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHcCCceEEEecCCccchh--HHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 444456888899999999997775432 1111 11111111122578899999999999999864
No 176
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=31.28 E-value=33 Score=39.57 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+=|.+|+++||+ |+++||+|| |-+| +|-|+.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VI------Peid--------~PGH~~ 100 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVI------PEID--------TPGHAE 100 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEE------EEEE--------ESSS-H
T ss_pred cCCHHHHHHHHHHHHHcCCcee------eecc--------CchHHH
Confidence 678999999998 899999999 7788 678864
No 177
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.58 E-value=55 Score=37.28 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.2
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCc
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHS 172 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~ 172 (1065)
..=|.+|+++|++ |.++||.|| |-+| .|-|+
T Consensus 55 ~~yT~~ei~ei~~yA~~~gI~vI------Peid--------~pGH~ 86 (301)
T cd06565 55 GAYTKEEIREIDDYAAELGIEVI------PLIQ--------TLGHL 86 (301)
T ss_pred CCcCHHHHHHHHHHHHHcCCEEE------ecCC--------CHHHH
Confidence 3458999999998 899999999 7787 57774
No 178
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.88 E-value=39 Score=39.21 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCcccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKL 364 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l 364 (1065)
.-+||.||+++ +...+.++.++ +.|||||-+|+...+
T Consensus 152 ~~~Dftnp~a~---------------------------~Ww~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 152 LMLDFTNPEAA---------------------------QWWMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred eeecCCCHHHH---------------------------HHHHHHHHHHHHhcCCcEEEecCCCcc
Confidence 35789999997 56677888888 479999999977543
No 179
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=29.58 E-value=57 Score=37.91 Aligned_cols=66 Identities=12% Similarity=-0.073 Sum_probs=40.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
.-.+-.+-+|++|+..|-|+--++.+-.-|.=..++|..++..+ ..+=+++|+++|+|+|||+.+=
T Consensus 92 D~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~Y 157 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGLY 157 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEEE
Confidence 44556789999999999998765542111222344555555333 3477899999999999999884
No 180
>KOG0496|consensus
Probab=29.20 E-value=70 Score=39.72 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=40.6
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.|...|++|+++|.--=+.. .+. -.+- .-.|...-|+.+||+.+|+.|+.|+|=.=
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~He---p~~g-----~y~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHE---PSPG-----KYDFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-ccc---CCCC-----cccccchhHHHHHHHHHHHCCeEEEecCC
Confidence 7788999999999997532211 110 0001 11356788999999999999999999743
No 181
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.98 E-value=38 Score=39.02 Aligned_cols=32 Identities=38% Similarity=0.785 Sum_probs=27.5
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.+=|.+|+++|++ |.++||.|| |-+| +|-|+.
T Consensus 77 ~~YT~~di~eiv~yA~~rgI~vI------PEID--------~PGH~~ 109 (326)
T cd06564 77 GYYTKEEFKELIAYAKDRGVNII------PEID--------SPGHSL 109 (326)
T ss_pred CcccHHHHHHHHHHHHHcCCeEe------ccCC--------CcHHHH
Confidence 4569999999999 899999999 7788 688863
No 182
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.21 E-value=1.1e+02 Score=34.34 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=38.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCC-cCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGY-DISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY-~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
....-+|+-+++|+..|.+ +..-..+++ ...|+..+.+. .++++||+-|+++|++|+|=+-.
T Consensus 33 ~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeC
Confidence 6677799999999999988 221110111 35566666655 89999999999999988876443
No 183
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.60 E-value=3.4e+02 Score=30.62 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcCCc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQ 660 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~ 660 (1065)
|.+.++++++++++.++||-
T Consensus 21 y~s~~ev~~v~~~~r~~~iP 40 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNIP 40 (292)
T ss_pred CCCHHHHHHHHHHHHHhCCC
Confidence 45789999999999999985
No 184
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.50 E-value=1.3e+02 Score=38.91 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=34.9
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHH
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDV 790 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~ 790 (1065)
|++|+|+|.=+-| +...+++.|+++..+ .|++.... |. ......|.. +|+.||++|++..+.
T Consensus 331 ~~~Gikl~~~i~P-~i~~d~~~~~e~~~~-----Gy~~k~~~--g~-~~~~~~w~~~~a~~DFtnp~~r~Ww~~~ 396 (772)
T COG1501 331 HEKGIKLIVIINP-YIKQDSPLFKEAIEK-----GYFVKDPD--GE-IYQADFWPGNSAFPDFTNPDAREWWASD 396 (772)
T ss_pred HhcCceEEEEecc-ccccCCchHHHHHHC-----CeEEECCC--CC-EeeecccCCcccccCCCCHHHHHHHHHH
Confidence 4444444443333 233345677776532 45553332 44 233445654 999999999999953
No 185
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=27.18 E-value=1.9e+02 Score=27.80 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=41.4
Q ss_pred hcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceee
Q psy15051 591 LELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS 663 (1065)
Q Consensus 591 ~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIl 663 (1065)
|||.-|+++..++..|++-|+++|+|..=...... +| .--..++++++|++. .|+.||.
T Consensus 46 CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~-~~-----------~CP~~~~~~~~I~~~--~gi~VV~ 104 (107)
T PF08821_consen 46 CGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNP-HG-----------PCPHIDEIKKIIEEK--FGIEVVE 104 (107)
T ss_pred CCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCC-CC-----------CCCCHHHHHHHHHHH--hCCCEee
Confidence 55554568999999999999999999876654331 11 112267888887776 2887764
No 186
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.13 E-value=67 Score=35.57 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCCceeecccccccccccccc---hhhhhhccccccccccccCccccCCCCCCCccCcccchhhh
Q psy15051 642 GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCH---MYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESM 718 (1065)
Q Consensus 642 Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1065)
...+..+.+++.+|+.|+++.+|=. |... -+.+.++.|.++++.-+............ -..-....
T Consensus 133 ~~~~~~~~~l~~L~~~G~~ialDDF-------GtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~----iv~~iv~l 201 (256)
T COG2200 133 DDLDTALALLRQLRELGVRIALDDF-------GTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQA----IVRAIVAL 201 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEECC-------CCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHH----HHHHHHHH
Confidence 3456899999999999999999932 2222 45566788888888876655554333220 11223445
Q ss_pred hhhcCcEEEEEec
Q psy15051 719 EHRAGMKILVEFV 731 (1065)
Q Consensus 719 ~H~~Gi~vIlDvV 731 (1065)
+|+.|++||...|
T Consensus 202 a~~l~~~vvaEGV 214 (256)
T COG2200 202 AHKLGLTVVAEGV 214 (256)
T ss_pred HHHCCCEEEEeec
Confidence 7999999999987
No 187
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=26.94 E-value=84 Score=35.99 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=45.5
Q ss_pred HhhhHHHHHcCcC-EEEeCCCCcCCCCCCCCcCCCC-cccCCCCCCHHHHHHHHHHHHhcCCceeeccccc
Q psy15051 600 IEKIDYLKELGVE-TLWLTPFYSGPNGDIGYDISNH-TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668 (1065)
Q Consensus 600 ~~kLdYLk~LGvn-aI~L~PI~~~~~~~~GY~~~dy-~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~ 668 (1065)
.++|..+++.|++ .|.|-. ++. +..-. ..++..+ |.+++.+.++.+|+.||+|..++.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~------~d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETA------NDRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcC------CHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6788899999998 687754 221 12222 1456666 88999999999999999999999883
No 188
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.92 E-value=48 Score=39.93 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=26.6
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+=|.+|+++||+ |++|||.|| |-+| +|-|+.
T Consensus 93 ~YT~~di~eiv~yA~~rgI~VI------PEID--------~PGH~~ 124 (445)
T cd06569 93 YYSRADYIEILKYAKARHIEVI------PEID--------MPGHAR 124 (445)
T ss_pred ccCHHHHHHHHHHHHHcCCEEE------EccC--------CchhHH
Confidence 448999999999 999999999 7788 677863
No 189
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=24.65 E-value=1.8e+02 Score=33.99 Aligned_cols=19 Identities=11% Similarity=0.224 Sum_probs=14.9
Q ss_pred cCcHHHHHHHHH-HHhCCCEEE
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
||+.+ ++|+. ||++|+||+
T Consensus 62 ~~~~~--~~~~~~A~~~~v~v~ 81 (358)
T cd02875 62 FGDID--DELLCYAHSKGVRLV 81 (358)
T ss_pred cCCCC--HHHHHHHHHcCCEEE
Confidence 45554 48886 899999999
No 190
>PRK01060 endonuclease IV; Provisional
Probab=23.96 E-value=1.8e+02 Score=32.23 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=37.2
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCce
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQK 661 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~V 661 (1065)
++.+.|+.++++|+++|+|.+-- + +.+. +..-+.+++++|-+.+.+.|+++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~--p---~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGN--P---QQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCC--C---CCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 77899999999999999996521 1 1111 11236788888888898999984
No 191
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=52 Score=37.63 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=35.2
Q ss_pred hhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+-|+-..+.|++-|..+=....... + +-.+-|++|++.||+.|++||.|+-.
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~~~~~~~-~--------------~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLLIPEEDA-E--------------LYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHcCccceeeecccCCchH-H--------------HHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 3344455689999865422222111 1 12467999999999999999999876
No 192
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.82 E-value=1.2e+02 Score=35.46 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=44.2
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCc-eeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQ-KISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~-VIlDvv~ 667 (1065)
.++|..|+++|++.|.|.. .. .+..-+..+ .+-.+.++..+.|+.+++.|+. |-+|+.+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-qS-------~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-QS-------FRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-cc-------CChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 6789999999999998764 11 122222334 4556789999999999999996 6789888
No 193
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.40 E-value=1.7e+02 Score=32.37 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=37.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceee
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS 663 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIl 663 (1065)
-+.+.|+.++++|+++|.|.+.... . ...+.++ +.++++++.+.+.+.||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~-~---~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD-E---RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc-c---ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 5688999999999999999642110 0 0111111 356788888888888998874
No 194
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=22.29 E-value=3.5e+02 Score=35.90 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHhcCCce---eecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC---cccc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQK---ISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG---NQNR 714 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~V---IlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 714 (1065)
|.+.++++++++++.++||-+ .+|...- . ....+.|+.. +-..
T Consensus 197 Y~sq~eV~eva~~fre~~IP~DvIwlDidYm--~-----------------------------g~~~FTwD~~rFPdP~~ 245 (978)
T PLN02763 197 YESAKRVAEIARTFREKKIPCDVVWMDIDYM--D-----------------------------GFRCFTFDKERFPDPKG 245 (978)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEehhhh--c-----------------------------CCCceeECcccCCCHHH
Confidence 346799999999999999853 3343220 0 0001122211 1123
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCc--hhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKH--DWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQK 788 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~--~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~ 788 (1065)
+....|++|++++.=+.| ++..+. .-+.+.. ..++|+... +|.|. ....|.+ .|+.||+++++..
T Consensus 246 mv~~Lh~~G~kvv~iidP-gI~~d~gY~~y~eg~-----~~~~fvk~~--~G~~y-~G~vWpG~~~fpDFTnP~ar~WW~ 316 (978)
T PLN02763 246 LADDLHSIGFKAIWMLDP-GIKAEEGYFVYDSGC-----ENDVWIQTA--DGKPF-VGEVWPGPCVFPDFTNKKTRSWWA 316 (978)
T ss_pred HHHHHHHCCCEEEEEEcC-CCccCCCCHHHHhHh-----hcCeeEECC--CCCee-EeeecCCCccccCCCCHHHHHHHH
Confidence 333459999998876544 232222 2233332 224555432 34321 1233443 7999999999998
Q ss_pred HHHHhc
Q psy15051 789 DVVQSF 794 (1065)
Q Consensus 789 ~~lk~~ 794 (1065)
+.++.+
T Consensus 317 ~~~k~l 322 (978)
T PLN02763 317 NLVKDF 322 (978)
T ss_pred HHHHHH
Confidence 887764
No 195
>PRK15452 putative protease; Provisional
Probab=22.22 E-value=1.6e+02 Score=35.62 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=37.1
Q ss_pred HhhhHHHHHcCcCEEEeCC-CCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 600 IEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~P-I~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.++|...-+.|+++|++-. -|.... ...+| +.+++++.|+.||++|.+|.+-+
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~-----~~~~f--------~~edl~eav~~ah~~g~kvyvt~ 66 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRV-----RNNEF--------NHENLALGINEAHALGKKFYVVV 66 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhh-----hccCC--------CHHHHHHHHHHHHHcCCEEEEEe
Confidence 5566667778999999943 122111 01233 46899999999999999998863
No 196
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.17 E-value=1.2e+02 Score=37.12 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=44.7
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCC-ceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGK-QKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi-~VIlDvv~ 667 (1065)
.++|..||+.|++.|.|.|= + .+..-+..+ .+-.|.++..+.++.+++.|+ .|-+|+++
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQ--S------~~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~ 328 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQ--T------MNDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLII 328 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCC--c------CCHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 67899999999999998761 1 112222234 334678999999999999999 67799988
No 197
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.27 E-value=1.2e+02 Score=36.24 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=42.1
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCcee-ecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKI-SQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VI-lDvv~ 667 (1065)
.++|..++++|++.|.|.- ... +..-...+.... +.++..+.|+.+++.|+.+| +|+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGv-QS~-------~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~ 200 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV-QSF-------HDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIY 200 (430)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC-------CHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 6789999999999998753 111 111122233332 67899999999999999865 89887
No 198
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.10 E-value=77 Score=37.06 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=34.3
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
..+-|.-.+++|++.|+.+= ..+.. +..+ ..+.|++|++.||+.||+||+|+-.
T Consensus 16 ~~~yi~~a~~~Gf~~iFTSL--~ipe~----~~~~---------~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 16 NKAYIEKAAKYGFKRIFTSL--HIPED----DPED---------YLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHHCCCCEEECCC--CcCCC----CHHH---------HHHHHHHHHHHHHHCCCEEEEECCH
Confidence 34445555669999997751 11111 0111 1589999999999999999999887
Done!