RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15051
(1065 letters)
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 255 bits (652), Expect = 1e-75
Identities = 75/489 (15%), Positives = 157/489 (32%), Gaps = 126/489 (25%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
++WW +Y+I + G G+L G + ++DYL L V+
Sbjct: 9 AQKWWHTGALYRI--GDLQAFQGHGAGNLAG---------------LKGRLDYLSSLKVK 51
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
L L P + D+ ++ ++ +FG+ EDFD L++ K
Sbjct: 52 GLVLGPIHKNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKS-------------- 95
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ I L+ G +W V
Sbjct: 96 -------IRVI-----------LDLTPNYRGENSW-------------------FSTQVD 118
Query: 733 NHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQ 792
++ D W G G + +++ S + +++ +
Sbjct: 119 TVATKVKDA-------------LEFWLQA--GVDGFQVRDIENLKDAS-SFLAEWQNITK 162
Query: 793 SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAY 852
F ++I S L+++ + L + ++ + S + +++V Y
Sbjct: 163 GFSEDRLLIAGTNSSDLQQILSLLESNK----DLLLTSSYLSD--SGSTGEHTKSLVTQY 216
Query: 853 LKSLPSGKWSSWMVGGHSITRIATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELGMESPI 911
L + + W SW + R+ T + P L+ ++ LPGT V GDE+G+++
Sbjct: 217 LNATGNR-WCSWSLSQA---RLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAA 272
Query: 912 LRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQ 971
L + P W++ +P + +
Sbjct: 273 LPGQPMEAP--------------------VMLWDESSFP-------DIPG-AVSANMTVK 304
Query: 972 AEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLII-NLN 1030
+ + S S+++ L+ R+ ++ GD+ + +F R +L++ N
Sbjct: 305 GQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFG 364
Query: 1031 SRTETVDLS 1039
+ L
Sbjct: 365 DVGLSAGLQ 373
Score = 63.2 bits (154), Expect = 2e-10
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
++WW +Y+I + G G+L G R YL +L +
Sbjct: 9 AQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLS-SLKVK 51
Score = 38.2 bits (89), Expect = 0.012
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPR 375
LEFWL+ GVDGF + + L + SF E +
Sbjct: 127 ALEFWLQAGVDGFQVRDIENLKDASSFLAEWQ 158
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 225 bits (577), Expect = 4e-65
Identities = 52/382 (13%), Positives = 114/382 (29%), Gaps = 90/382 (23%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPN-------- 771
H +G+K++++ +H+ H WF K+ + Y +YYVW +
Sbjct: 80 HDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANK--ETDLDERREWDGEKIW 137
Query: 772 --------------------NW-----------------------------KHINITSRE 782
N+ KH+ T +
Sbjct: 138 HPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQ 197
Query: 783 VMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNA 842
+R K + + + E ++ V ++ +N++ +
Sbjct: 198 NVRFWKYFLSDLKG--IFLAEIWAE-ARMVDEHGR-----IFGYMLNFDTSHCIKEAVWK 249
Query: 843 KDLENVVNAYLKS-LPSGKWSSWMVGGHSITRIATRY---SPDLVDAMNMLTLLLPGTAV 898
++ ++ + ++ + H ++R+A+ S + + + LPG +
Sbjct: 250 ENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPL 309
Query: 899 TFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958
F GDELGM K Y K + PF WN+ W
Sbjct: 310 VFYGDELGM-------------------KGVYQKPNTEVVLDPFPWNESMCVEGQTFWKW 350
Query: 959 LPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTE 1018
+ + ++ + +K+ S S T R + + + + + +
Sbjct: 351 PAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDRAKLEFLCKEDKFLVYRLYD 410
Query: 1019 GSTSVYLIINLNSRTETVDLSD 1040
S+ + NL+ +
Sbjct: 411 DQHSLKVFHNLSGEEVVFEGVK 432
Score = 138 bits (349), Expect = 7e-35
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFY 620
+ YQI V SF+D N DG+GD R G+ + YLKELG++ +WL P +
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFR---------------GLKNAVSYLKELGIDFVWLMPVF 46
Query: 621 SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
S + GYD+ + ++G+ +F E+++ H G
Sbjct: 47 SSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSG 83
Score = 57.2 bits (139), Expect = 2e-08
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 32 VIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ YQI V SF+D N DG+GD RG ++ YL+ LG+D
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRG--LKNAVSYLK-ELGID 38
Score = 37.9 bits (89), Expect = 0.015
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYE 366
++ L GVDGF D+ + +
Sbjct: 171 LVLHLLDMGVDGFRFDAAKHMRD 193
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 175 bits (447), Expect = 3e-47
Identities = 68/398 (17%), Positives = 116/398 (29%), Gaps = 116/398 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKH---------------DWFI---------------KSAQKI 749
H+ G+K++++ NH+S +H D+++
Sbjct: 92 HQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHY 151
Query: 750 DPYTNYY-----------------V----------WKD-GLNG----------KPGTPPN 771
P T Y V W G++G P
Sbjct: 152 SP-TGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDK 210
Query: 772 N---WKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT---QGTH 825
N W+ R+ + K V ++ E + S E VA Y+ G
Sbjct: 211 NFTWWEKF----RQEIEEVKPV--------YLVGEVWDIS-ETVAPYFKYGFDSTFNFKL 257
Query: 826 LSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD 884
K +++ Y + + G + + H RI + D
Sbjct: 258 AEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNK 317
Query: 885 A--MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942
A + L LPG + G+E+GM Q + R PF
Sbjct: 318 ARVAASIYLTLPGNPFIYYGEEIGMR-------GQGP---------------HEVIREPF 355
Query: 943 QWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002
QW + G + W P N + + E+K S + Y+ L R + G
Sbjct: 356 QWYNGSGEGET---YWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKI 412
Query: 1003 KISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+I V R +Y+ NL +R + ++
Sbjct: 413 EIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVAS 450
Score = 141 bits (359), Expect = 6e-36
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 24/111 (21%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKE------- 608
+ K+ Y+I V SF DS+ DGIGDL+ GIIEK+DYL +
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLK---------------GIIEKLDYLNDGDPETIA 45
Query: 609 -LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV +WL P + P+ GYD++++ ++ D+GT+EDF +LV+ H +G
Sbjct: 46 DLGVNGIWLMPIFKSPSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95
Score = 67.6 bits (166), Expect = 1e-11
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRG 54
+ K+ Y+I V SF DS+ DGIGDL+G
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKG 28
Score = 41.5 bits (98), Expect = 0.002
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 28/74 (37%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
I ++WLK+GVDGF +D + ++ + + +
Sbjct: 182 IAKYWLKQGVDGFRLDGAMHIFPPAQY----------------------------DKNFT 213
Query: 404 MLYKWRTLVEKFGN 417
K+R +E+
Sbjct: 214 WWEKFRQEIEEVKP 227
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 157 bits (399), Expect = 2e-40
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 15/119 (12%)
Query: 540 STASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGI 599
S + WWK V YQI SFKD+N+DGIGD+RG I
Sbjct: 3 SLNQDIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRG---------------I 47
Query: 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
IEK+DYLK LG++ +W+ P Y PN D GYDISN+ ++ K++GTMEDFD LV + +
Sbjct: 48 IEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106
Score = 131 bits (332), Expect = 6e-32
Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 30/278 (10%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+ E + L++ ++++ + ++ + ++ S + +++
Sbjct: 262 VATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIIS 321
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAGD 903
++ W+++ + H R + + D A+ +TL T + G
Sbjct: 322 KMDVTVGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGS 381
Query: 904 ELGME-SPILRYEDQRDPEG----------YIFGKDNYLKVC----RDGSRVPFQWNDQE 948
ELGM P + + D E +L RD SR PFQWND
Sbjct: 382 ELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTL 441
Query: 949 NAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-ISTP 1007
NAGF++ K W ++PNY +NA+ E+ + S + YK + LR A+ G Y+ ++
Sbjct: 442 NAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVYGAYQDLNPQ 501
Query: 1008 NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
+N V+ TRT G+ +++N L
Sbjct: 502 DNTVYAYTRTLGNERYLVVVNFKEYPVRYTLPANDAIE 539
Score = 78.7 bits (195), Expect = 4e-15
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNWK 774
+ M+++++ V NH+S++H WFI+S K +PY +YY W+D GK PPNN+
Sbjct: 103 KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRD---GKDNQPPNNYP 155
Score = 70.7 bits (174), Expect = 1e-12
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 11 STASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGL 68
S + WWK V YQI SFKD+N+DGIGD+RG + ++ YL+ +LG+
Sbjct: 3 SLNQDIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRG--IIEKLDYLK-SLGI 59
Query: 69 D 69
D
Sbjct: 60 D 60
Score = 40.2 bits (95), Expect = 0.004
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+L FWL +GV G D+V + F N + YT P +
Sbjct: 198 MLRFWLDKGVSGMRFDTVATYSKIPGFPNL---------TPEQQKNFAEQYT-MGPNIHR 247
Query: 404 ML 405
+
Sbjct: 248 YI 249
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 156 bits (398), Expect = 2e-40
Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K WWK V YQI SF D+N DGIGDLRG IIEK+DYL ELGV+
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRG---------------IIEKLDYLVELGVD 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+ P Y PN D GYDIS++ + +FGTM+DFDEL+ H +G
Sbjct: 47 IVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92
Score = 131 bits (332), Expect = 4e-32
Identities = 62/296 (20%), Positives = 118/296 (39%), Gaps = 34/296 (11%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN---KFGATS-NAKDLENVVNAYL 853
+M + EA ++++ ++ G + ++ +E + + S + + L+ + +
Sbjct: 251 IMTVGEANGVTVDEAEQWVGE-ENGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQ 309
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDELGM 907
K L + W++ + H + R + + D A+ L + GT + G E+GM
Sbjct: 310 KGLENRGWNALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGM 369
Query: 908 E-SPILRYEDQRDPEGYIFGKDNY-------------LKVC----RDGSRVPFQWNDQEN 949
D RD Y + + RD SR P QW+ N
Sbjct: 370 TNVRFDDIRDYRDVSA----LRLYELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASN 425
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
AGF+ W+ V+ NY T+N +AE++ S +S Y+ + LR + G Y + N+
Sbjct: 426 AGFTTGTPWIKVNENYRTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTYDLLLENH 485
Query: 1010 -YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
++ TRT G +++NL+ R D+A+ V + +
Sbjct: 486 PSIYAYTRTLGRDRALVVVNLSDRPSLYRYDGFRLQSSDLALSNYPVRPHKNATRF 541
Score = 78.7 bits (195), Expect = 4e-15
Identities = 24/56 (42%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
HR G+K++++ V NH+S++H WFI+S + + +P ++Y+W+D GK G PNNW+
Sbjct: 89 HRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRD---GKDGREPNNWE 141
Score = 69.9 bits (172), Expect = 2e-12
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+K WWK V YQI SF D+N DGIGDLRG + ++ YL LG+D
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRG--IIEKLDYLV-ELGVD 46
Score = 44.1 bits (105), Expect = 2e-04
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
++ +WL +G+DGF +D++ + + + P P ++QP E
Sbjct: 184 MVNWWLDKGIDGFRIDAISHIKKKPGLPDLP-------NPKGLKYVPSFAGHMNQPGIME 236
Query: 404 ML 405
L
Sbjct: 237 YL 238
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 156 bits (397), Expect = 2e-40
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
QK WW +YQI SF D+N DGIGDL+G I K+DYL++LGV
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKG---------------ITSKLDYLQKLGVM 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WL+P Y P D GYDI+N+ + FG M D D L+ +G
Sbjct: 47 AIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Score = 122 bits (309), Expect = 4e-29
Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 34/298 (11%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS---NAKDLENV 848
L+ + E + + E +Y + Q H+ + ++ N L+ +
Sbjct: 231 LLTVGETWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTI 290
Query: 849 VNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFA 901
N + L G+ W+S H + R+ + + A+ +L L+ GT +
Sbjct: 291 FNKWQTELELGQGWNSLFWNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQ 350
Query: 902 GDELGME-SPILRYEDQRDPEGYIF-------GKD------NYLKVCRDGSRVPFQWNDQ 947
G+E+GM P + D E + GK + + RD +R P QW+
Sbjct: 351 GEEIGMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDAS 410
Query: 948 ENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006
+NAGFS A K+WLPV+PNY +N QA K S + Y+ L LR + + D+++
Sbjct: 411 QNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLP 470
Query: 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
+ VF R +++N++ + E +++ + + I ++ ++ LA+ KL
Sbjct: 471 TADKVFAYLRKVREERYLIVVNVSDQEEVLEID---VDKQETLISNTNESAALANHKL 525
Score = 70.6 bits (174), Expect = 1e-12
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
G+KI+++ V NH+S++H WFI++ +YY+W D PN+ +
Sbjct: 89 KMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCD--------QPNDLE 136
Score = 70.3 bits (173), Expect = 2e-12
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
QK WW +YQI SF D+N DGIGDL+G + + YL+ LG+
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKG--ITSKLDYLQ-KLGVM 46
Score = 36.7 bits (86), Expect = 0.037
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 344 ILEFWLKRGVDGFGMDSVL---KLYEHESFANEPRL 376
++ FW+ +G+ GF MD + K+ +N P+L
Sbjct: 179 MMNFWIDKGIGGFRMDVIDMIGKIPAQHIVSNGPKL 214
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 156 bits (397), Expect = 3e-40
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K+WWK +V+YQI SF DSN DGIGDLRG II K+DYLKELG++
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG---------------IISKLDYLKELGID 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WL+P Y PN D GYDIS++ ++ +FGTMED+DEL+ +H +
Sbjct: 47 VIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERN 92
Score = 128 bits (323), Expect = 6e-31
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+M + E + E+ Y G Q H+ ++ K+ + L+ +
Sbjct: 250 IMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLT 309
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDE 904
+ K+L W+S H R+ +R+ D + + + ++ GT + G+E
Sbjct: 310 KWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEE 369
Query: 905 LGME-SPILRYEDQRDPEGYIFGKDNYLKVC------------------RDGSRVPFQWN 945
+GM ++ RD E + Y + RD +R P QW+
Sbjct: 370 IGMTNVRFESIDEYRDIET----LNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWD 425
Query: 946 DQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS 1005
DQ +AGF+ + W+ V+PNY +N + + K S + YK L LR + V G Y +
Sbjct: 426 DQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLI 485
Query: 1006 TPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGG 1046
NN +F RT G + +I N + +L + I
Sbjct: 486 LENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISYSE 527
Score = 78.3 bits (194), Expect = 5e-15
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNWK 774
H MK++++ V NH+S++H+WFI+S + K + Y +YY+W+ GK G PNNW
Sbjct: 89 HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRP---GKEGKEPNNWG 141
Score = 69.1 bits (170), Expect = 3e-12
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+K+WWK +V+YQI SF DSN DGIGDLRG + + YL+ LG+D
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG--IISKLDYLK-ELGID 46
Score = 41.4 bits (98), Expect = 0.002
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+++FWL++G+DGF MD + + + E + + H + ++ P ++
Sbjct: 184 MMKFWLEKGIDGFRMDVINFISKEEGLPTVE--------TEEEGYVSGHKHFMNGPNIHK 235
Query: 404 ML 405
L
Sbjct: 236 YL 237
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 156 bits (396), Expect = 4e-40
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
WWK+ V YQ+ SFKD+N DGIGD +G + EK+DYLK LG++
Sbjct: 3 GAPWWKSAVFYQVYPRSFKDTNGDGIGDFKG---------------LTEKLDYLKGLGID 47
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+ P Y+ PN D GYDIS++ EV K++GTMEDFD L+ + +G
Sbjct: 48 AIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
Score = 131 bits (332), Expect = 5e-32
Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 29/277 (10%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATSNAKDLENVVNA 851
+ E + L +V + + + + + D ++
Sbjct: 249 AVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDK 308
Query: 852 YLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAGDE 904
W+++ +G H R + + D A+ +TL GT F GDE
Sbjct: 309 VDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDE 368
Query: 905 LGME-SPILRYEDQRDPEG----------YIFGKDNYLKVC----RDGSRVPFQWNDQEN 949
LGM P +D D E + L RD +R PFQW+D N
Sbjct: 369 LGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSAN 428
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
AGF+ K WL V+PNY +NA E S YS Y++L ++R + A+ G Y+ P+N
Sbjct: 429 AGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSN 488
Query: 1010 -YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
V+ TR++ + +++N + + L D +
Sbjct: 489 ADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIA 525
Score = 78.7 bits (195), Expect = 3e-15
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
+ GM+++V+ V NHSS++H+WF S A K +PY +YY W+D GK G PNN+
Sbjct: 90 KKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRD---GKDGHEPNNYP 142
Score = 69.5 bits (171), Expect = 3e-12
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
WWK+ V YQ+ SFKD+N DGIGD +G + ++ YL+ LG+D
Sbjct: 3 GAPWWKSAVFYQVYPRSFKDTNGDGIGDFKG--LTEKLDYLK-GLGID 47
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+L FWL +GV G D+V + F + + YT P +
Sbjct: 185 MLRFWLDKGVSGMRFDTVATYSKTPGFPDL---------TPEQMKNFAEAYT-QGPNLHR 234
Query: 404 ML 405
L
Sbjct: 235 YL 236
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 156 bits (396), Expect = 5e-40
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+ +WWK YQI SFKDSN+DG GD++G I K++Y+KELG +
Sbjct: 11 EPKWWKEATFYQIYPASFKDSNDDGWGDMKG---------------IASKLEYIKELGAD 55
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W++PFY P D+GYDI+N+ +V +GT ED L++ H G
Sbjct: 56 AIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101
Score = 107 bits (269), Expect = 5e-24
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 40/288 (13%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+M + E S E Y +H V + ++ KD + +
Sbjct: 272 IMTVGEMQHASDETKRLYTSASRHELSELFNFSHTDVGTSPLFRYNLVPFELKDWKIALA 331
Query: 851 AYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAG 902
+ + WS+ + H R TR+ D +++L L GT + G
Sbjct: 332 ELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQG 391
Query: 903 DELGME----SPILRYED--------------QRDPEGYIFGKDNYLKVCRDGSRVPFQW 944
ELG P+ +YED + E + + RD +R P QW
Sbjct: 392 QELGQINFKNWPVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQW 451
Query: 945 NDQE-NAGFSK--AKSWLPVHPNYWT-LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM- 999
+ +E NAGFS AK W ++ ++ +N + E K S + +K+ R + +
Sbjct: 452 SREEPNAGFSGPSAKPWFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVY 511
Query: 1000 -GDYKISTPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
D++ +N +F T+ + +++ +N +S + + +
Sbjct: 512 GYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDDSSF 559
Score = 74.9 bits (185), Expect = 6e-14
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGK---PGTPPNNWK 774
H+ GMK + + V NH S++H+WF +S + K +P +++ W+ PPNNWK
Sbjct: 98 HKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWK 156
Score = 69.2 bits (170), Expect = 4e-12
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ +WWK YQI SFKDSN+DG GD++G + + Y++ LG D
Sbjct: 11 EPKWWKEATFYQIYPASFKDSNDDGWGDMKG--IASKLEYIK-ELGAD 55
Score = 43.0 bits (102), Expect = 6e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+ +WL GVDGF +D + + P + + + YT++ P +E
Sbjct: 200 AVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDK------NSTWQSSDPYTLNGPRIHE 253
Query: 404 ML 405
Sbjct: 254 FH 255
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 153 bits (388), Expect = 1e-38
Identities = 104/531 (19%), Positives = 185/531 (34%), Gaps = 123/531 (23%)
Query: 555 EWWKNTVIYQILVPSFK--DSNNDGIGDLRGKNVRKRY-----LELTLGLGIIEKIDYLK 607
W+ TV YQI + SF D NND ++ R+ L GI++ ID+L+
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLA-----GIMKHIDHLE 275
Query: 608 ELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS---- 663
+LGVET++LTP +S + YD ++ + K GTMEDF++LV+++HS+ I
Sbjct: 276 DLGVETIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSRK---IKIVLD 331
Query: 664 -------------QKQTKNRSHQLYCHMYMYAICADK--FAIHSVYLNPVYAGSGNQNWR 708
K + + Y M+ + K + Y++ S
Sbjct: 332 ITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKL 391
Query: 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKH--DWFIKSAQKIDPYTNYYVW-KDGLNG- 764
+N E + ++ +F NH N D+FI + W G++G
Sbjct: 392 DYFRNNKPFYEAFFNIWLMAKF--NH-DNPRTVDYFIDITKF---------WIDKGIDGF 439
Query: 765 ----KPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGD 820
G + K + + D +++ E + + +
Sbjct: 440 RIDVAMGIHYSWMKQYY---EYIKNTYPDF--------LVLGELAENPRIYMDYFDSAMN 488
Query: 821 TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRY 878
+ I + + NV P K S +G H + RI +
Sbjct: 489 YYLRKAILELLIYKRIDLNEFISRINNVYAYI----PHYKALSLYNMLGSHDVPRIKSMV 544
Query: 879 S-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDG 937
L+ M +L LPG+ V + GDE+G+ E RDP
Sbjct: 545 QNNKLLKLMYVLIFALPGSPVIYYGDEIGL-------EGGRDP----------------D 581
Query: 938 SRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997
+R P W+ Y K L + + ++
Sbjct: 582 NRRPMIWD---------------------------RGNWDLELYEHIKKLIRIYKSCRSM 614
Query: 998 RMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDV 1048
R G + + + + + R + + ++N++S+ +VDL + D+
Sbjct: 615 RHGYFLVENLGSNLLFIKRWINNEEIIFLLNVSSKDISVDLKKLGKYSFDI 665
Score = 42.1 bits (99), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 26 EWWKNTVIYQILVPSFK--DSNNDGIGDLRGKNVRKR 60
W+ TV YQI + SF D NND ++ R+
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREY 257
Score = 29.7 bits (67), Expect = 6.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 341 LLCILEFWLKRGVDGFGMD 359
+ I +FW+ +G+DGF +D
Sbjct: 424 FIDITKFWIDKGIDGFRID 442
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 149 bits (379), Expect = 8e-38
Identities = 80/513 (15%), Positives = 164/513 (31%), Gaps = 84/513 (16%)
Query: 554 KEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKEL 609
+ + IYQI+ F + + ND + +R + R+ G G I+ +DY+ L
Sbjct: 101 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGL 160
Query: 610 GVETLWLTPFYSGPNGDI---GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666
G LW TP GY ++H + +G+ EDF L +G + Q
Sbjct: 161 GFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG-MGLIQDV 219
Query: 667 TKNRSHQLYCHMYMYAICA-DKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMK 725
+ H H +M + D ++ + Q+ A + E+ ++
Sbjct: 220 VLS--HIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADS-ENFTKGWFVE 276
Query: 726 ILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG-----KPGTPPNNWKHINITS 780
+ + N ++ ++ +++ GL+G + +
Sbjct: 277 GMPDL--NQTNPLVANYLIQNNI------WWIEYAGLSGLRIDTYGYSDGAFLTEY---T 325
Query: 781 REVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQ----GTHL-SV-NYEIMN 834
R +M + ++ + +S + VA + G +HL S+ ++ +++
Sbjct: 326 RRLMAEYPRLN--------MVGQEWSTRVPVVA-RWQRGKANFDGYTSHLPSLMDFPLVD 376
Query: 835 K----FGATSNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNM 888
T L V + + + G H + R+ + D
Sbjct: 377 AMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMN 436
Query: 889 LTLLL--PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWND 946
L L+ P ++GDE+ M S + + + D R P W
Sbjct: 437 LVFLMTMPRIPQFYSGDEILMTSTV---KGRDDAS------------YR--RDFPGGWAG 479
Query: 947 QENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006
+ FS A + + + + L R + G
Sbjct: 480 DKANAFSGAGLT----------------SQQRAAQDLVRKLANWRKNQPVIHNGRLMHFG 523
Query: 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039
P ++ R + + +N N + T+ +
Sbjct: 524 PEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTA 556
Score = 34.8 bits (80), Expect = 0.17
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 25 KEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRK 59
+ + IYQI+ F + + ND + +R + R+
Sbjct: 101 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRR 137
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 148 bits (376), Expect = 4e-37
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 16/120 (13%)
Query: 539 LSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLG 598
+ + L++ E + + YQ+L+ SF DS+ DG GDL G
Sbjct: 17 VEGQWTALTASPDTWDETKRADISYQLLLYSFADSDGDGYGDLN---------------G 61
Query: 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ +K+DYL +LGV+ LWL+P + + GYD++++T+V GT DFD LV H++G
Sbjct: 62 VTQKLDYLNQLGVKALWLSPIHPCMS-YHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG 120
Score = 133 bits (336), Expect = 3e-32
Identities = 51/273 (18%), Positives = 83/273 (30%), Gaps = 40/273 (14%)
Query: 781 REVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI---MNKFG 837
E M + +I E S +KVA YY G S Y + +N
Sbjct: 387 YEDMNAYYKQKGHTDDF-YMIGEVLSE-YDKVAPYYK-GLPALFEFSFWYRLEWGINNST 443
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDA--MNMLTLLLPG 895
AKD+ + Y S + + H R +++ + L G
Sbjct: 444 GCYFAKDILSYQQKYAN-YRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSAG 502
Query: 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955
+ G+ELG+ G + R P W D ++
Sbjct: 503 HPYIYYGEELGLYGTK--------DNG------------DEYVRSPMLWGDSYTTNYTDK 542
Query: 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNY----- 1010
V N T+ Q S ++Y LT LR T A+ G+ + N
Sbjct: 543 T-DATVSKNVKTVADQQADTH--SLLNIYFSLTRLRNTYPALAEGNMTKHSVYNESQEKD 599
Query: 1011 ---VFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+ T+ + + +I N + L+D
Sbjct: 600 YKPIAAWYMTKDNEKLLVIHNFGGTAMQLPLTD 632
Score = 72.5 bits (178), Expect = 4e-13
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLN---GKPGTPPNNWK 774
H G+KI +++V NH+ H WF +++ PY NYY + + +
Sbjct: 117 HNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQE 175
Score = 68.2 bits (167), Expect = 9e-12
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 10 LSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLG 67
+ + L++ E + + YQ+L+ SF DS+ DG GDL G V ++ YL LG
Sbjct: 17 VEGQWTALTASPDTWDETKRADISYQLLLYSFADSDGDGYGDLNG--VTQKLDYLN-QLG 73
Query: 68 LD 69
+
Sbjct: 74 VK 75
Score = 55.1 bits (133), Expect = 1e-07
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 720 HRAGMKILVEFVPNH-----SSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNW 773
++ V+F +SN W + + KD G P N
Sbjct: 250 GNNIYELTVDFESTWGLLIRTSNASFWPSGTKYGASSSSEKLALNKDFKLTNAG-NPANI 308
Score = 42.0 bits (99), Expect = 0.001
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFA-NEPRLPE 378
+ W+ RGVDG +D+V +Y E+ N L
Sbjct: 350 AAKGWIARGVDGLRLDAVKHIYHSETSEENPRFLKM 385
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 119 bits (301), Expect = 5e-28
Identities = 97/556 (17%), Positives = 169/556 (30%), Gaps = 133/556 (23%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGL--------------- 597
+W KN V+YQI F + + ND N +
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 187
Query: 598 ----GIIEKIDYLKE-LGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELV 651
GI +K+ Y+K+ LG L+L P F + N YD ++ V FG L+
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNH--KYDTQDYMAVDPAFGDNSTLQTLI 245
Query: 652 KLVHSKGKQ---KISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708
+HS + N H H + F ++ + + S + W
Sbjct: 246 NDIHSTANGPKGYLILDGVFN--HTGDSHPW--------FDKYNNFSSQGAYESQSSPWY 295
Query: 709 AGNQNRAESMEHR--AGMKILVEFVPNHSSNKHDWFIKSAQK------IDPYTN------ 754
+ G L + +S + I + ++P +
Sbjct: 296 NYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRL 355
Query: 755 ---YYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEK 811
YV +G NG T W V + II E + +
Sbjct: 356 DAAQYVDANGNNGSDVTNHQIWSEFR---NAVKGVNSNAA--------IIGEYWGNANPW 404
Query: 812 VAKYYGTGDT----QGTHLSVNYEIMNKFGATS----NAKDLENVVNAYLKSLPSGKWSS 863
A D G V+ I K + + ++ + + P+ S
Sbjct: 405 TA-QGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQS 463
Query: 864 WM--VGGHSITRIATRYSPDLVDAMNM---LTLLLPGTAVTFAGDELGMESPILRYEDQR 918
M + H ITR ATR D + + + GT + GDE GM+
Sbjct: 464 MMNFLSNHDITRFATRSGGD-LWKTYLALIFQMTYVGTPTIYYGDEYGMQG--------- 513
Query: 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKP 978
G D +R F W+ +
Sbjct: 514 -------GAD-------PDNRRSFDWS---------------------------QATPSN 532
Query: 979 SHYSVYKDLTTLRATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETV 1036
S ++ + L T+R A+R G + I+ N ++ R + + +++N +S + TV
Sbjct: 533 SAVALTQKLITIRNQYPALRTGSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTV 592
Query: 1037 DLSDCIENGGDVAIFT 1052
++ + + + T
Sbjct: 593 NVPVWQLSMPNGSTVT 608
Score = 33.2 bits (76), Expect = 0.48
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKN 56
+W KN V+YQI F + + ND N
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYN 160
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 115 bits (290), Expect = 3e-27
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGV 611
+ + +N +IY + V ++ ++ G+ G + + +K+LG
Sbjct: 5 DTQTQLRNEMIYSVFVRNYSEA-----GNFAG---------------VTADLQRIKDLGT 44
Query: 612 ETLWLTPFYSGPNGDI------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ LWL P + Y I ++ + ++GT+ DF L H G
Sbjct: 45 DILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97
Score = 105 bits (265), Expect = 4e-24
Identities = 41/365 (11%), Positives = 95/365 (26%), Gaps = 109/365 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHI--- 776
H GMK++++ V NH+S + ++ +G+ +W +
Sbjct: 94 HELGMKVMLDIVYNHTSPDSVLA-------TEHPEWFYHDA--DGQLTNKVGDWSDVKDL 144
Query: 777 NITSREVMRSQKDV------------------------------VQSFPLILMIITEAYS 806
+ E+ + Q D V + + + E+
Sbjct: 145 DYGHHELWQYQIDTLLYWSQFVDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAG 204
Query: 807 PSLEKVAKYYGTGDTQGTHLSV------NYEIMNK----FGATSNAKDLENVVNAYLKSL 856
+ + G + L +Y++ + S + +++ +
Sbjct: 205 SGFIEELRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATF 264
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLL--LPGTAVTFAGDELGMESPILRY 914
P + H R+ + +A+N LT + G + + G E E
Sbjct: 265 PGNYVKMRFLENHDNARMMSLMHSK-AEAVNNLTWIFMQRGIPLIYNGQEFLAE------ 317
Query: 915 EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
RD + +
Sbjct: 318 ------HQPSLF-------DRD----TMVADRHGDV------------------------ 336
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034
+ + L T++ +R DY+++ + +T ++ I L +
Sbjct: 337 ------TPLIQKLVTIKQLP-LLRAADYQLAVVEEGIVKITYRAAGEALTAWIPLKGQVT 389
Query: 1035 TVDLS 1039
V
Sbjct: 390 AVATK 394
Score = 42.3 bits (100), Expect = 6e-04
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 23 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ + +N +IY + V ++ ++ G+ G V ++ LG D
Sbjct: 5 DTQTQLRNEMIYSVFVRNYSEA-----GNFAG--VTADLQRIK-DLGTD 45
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 104 bits (261), Expect = 2e-23
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGI-------GDLRGKNVRKRYLELTLGLGIIEKIDYLKE 608
W++ YQI F + G + + TL G+ EK+ YL +
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTL-WGVAEKLPYLLD 61
Query: 609 LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGVE ++L P ++ + Y ++ +V G E L+++ H+ G
Sbjct: 62 LGVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG 110
Score = 67.0 bits (164), Expect = 1e-11
Identities = 58/389 (14%), Positives = 99/389 (25%), Gaps = 134/389 (34%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKDGLNGKPGTPPN-----N 772
H G++++++ V NH+ F + + PY ++Y K PN
Sbjct: 107 HAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWG 166
Query: 773 WKH---INITSREVMR-----SQK-----------DVVQSFPLI---------------- 797
+ + + V ++ DV P
Sbjct: 167 NPELPKLKVETPAVREYLLAVAEHWIRFGVDGWRLDVPNEIPDPTFWREFRQRVKGANPE 226
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-GATSNAKDLENVVNAYLKSL 856
I+ E + A ++ GD +NY + G ++
Sbjct: 227 AYIVGEIWEE-----ADFWLQGD--MFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGR 279
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDA-MNMLT------------------------- 890
+ H + + RY P++V A MN+LT
Sbjct: 280 IEPLQALAFS--HRLEDLFGRYRPEVVRAQMNLLTSHDTPRLLSLMRGSVERARLALALL 337
Query: 891 LLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWND-QEN 949
LLPG + G+E+GM G GKD +R W + +
Sbjct: 338 FLLPGNPTVYYGEEVGM-------------AG---GKD-------PENRGGMVWEEARWQ 374
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
K L LR A+R Y +
Sbjct: 375 KDL----------------------------RETVKRLARLRKEHPALRTAPYLRIYAQD 406
Query: 1010 YVFILTRTEGSTSVYLIINLNSRTETVDL 1038
R ++N + D
Sbjct: 407 GHLAFAR----GPYLAVVNASPHPFRQDF 431
Score = 36.1 bits (84), Expect = 0.054
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGD 51
W++ YQI F + G
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPA 27
Score = 30.4 bits (69), Expect = 4.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 341 LLCILEFWLKRGVDGFGMDSVLKLYEHE 368
LL + E W++ GVDG+ +D ++ +
Sbjct: 184 LLAVAEHWIRFGVDGWRLDVPNEIPDPT 211
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 102 bits (256), Expect = 1e-22
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
+W K +V+Y L + N+ G G +V T ++ + ++K LG + +
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF-FKMMLLLPFVKSLGADAI 137
Query: 615 WLTPFY-------SGPNGDIGYDISN--------HTEVGKDFGTMEDFDELVKLVHSKG 658
+L P G Y + N H + + F E+F V+ H G
Sbjct: 138 YLLPVSRMSDLFKKGDAPS-PYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195
Score = 62.2 bits (150), Expect = 6e-10
Identities = 24/242 (9%), Positives = 52/242 (21%), Gaps = 45/242 (18%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
++I E +K +K G G++ +
Sbjct: 409 FVMIAEELDMEKDKASKEAGYDVI--------------LGSSWYFAGRVEEIGKLPDIAE 454
Query: 858 SGKWSSWMVGG-HSITRIATRYSPDLVDAMN--MLTLLLPGTAVTFAGDELGMESPILRY 914
RIATR + + + L G E+G + P+
Sbjct: 455 ELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLG 514
Query: 915 EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
D + P + A F
Sbjct: 515 LDTDPNLRKVL--------------SPTDEFFGKLAFFDHY--------------VLHWD 546
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034
+ K L +R + + + + + + + + N+ +
Sbjct: 547 SPDRGVLNFIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEKNGQKIVIAANVGKEPK 606
Query: 1035 TV 1036
+
Sbjct: 607 EI 608
Score = 54.5 bits (130), Expect = 2e-07
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
H G++++++F+P ++ D + + +++ W TPP
Sbjct: 192 HILGIRVILDFIPRTAARDSDLIRE-------HPDWFYWIKVEELADYTPPRAE 238
Score = 45.6 bits (107), Expect = 8e-05
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL 66
+W K +V+Y L + N+ G G +V T
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF 119
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 100 bits (250), Expect = 5e-22
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGL-------GIIEKIDYLK 607
+W K+ V YQI F S L+ TL GI+E +DY++
Sbjct: 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQ 66
Query: 608 ELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LG+ ++ TP F S N Y ++ +V G E F EL+ H +
Sbjct: 67 NLGINAIYFTPIFQSASNH--RYHTHDYYQVDPMLGGNEAFKELLDAAHQRN 116
Score = 63.9 bits (156), Expect = 1e-10
Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 55/203 (27%)
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPGT 896
A + + L+ P + + + H R+ T D+ LL PG
Sbjct: 292 FAAEYATKIQEVLQLYPWEIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGA 351
Query: 897 AVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK 956
+ GDE+G+ G G D SR F N
Sbjct: 352 PSIYYGDEVGLP-------------G---GID-------PDSRRGFPLEANWNQEI---- 384
Query: 957 SWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR 1016
++ ++ L T+R T A+R GDY++ +++ R
Sbjct: 385 ------------------------FNTHRQLITIRQTYPALRTGDYQVLYAQGQLYLFAR 420
Query: 1017 TEGSTSVYLIINLNSRTETVDLS 1039
T G+ + + IN + + T ++
Sbjct: 421 TLGTEELIIAINAGTSSATANVD 443
Score = 45.4 bits (108), Expect = 8e-05
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKD-GLNGKPGTPPNNW 773
H+ +K++++ V NHSS +F + P+ N++ + L+ G P N+
Sbjct: 113 HQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANY 169
Score = 33.9 bits (78), Expect = 0.30
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGIGD 51
+W K+ V YQI F S +
Sbjct: 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQ 34
Score = 29.2 bits (66), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANE 373
I E+WLK G+DG+ +D V + F E
Sbjct: 195 IAEYWLKFGIDGWRLD-VPFEIKTPGFWQE 223
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 100 bits (250), Expect = 9e-22
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLR-GKNVRKRYLELTLG--LGIIEKIDYLKEL 609
EW K VIYQI F + + ND G + K+ R R+ G G+I+++ YL+EL
Sbjct: 126 EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEEL 185
Query: 610 GVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
GV L+ TP F S + YD +++ + FG + F LV H +G
Sbjct: 186 GVTALYFTPIFASPSHH--KYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Score = 79.7 bits (197), Expect = 2e-15
Identities = 58/384 (15%), Positives = 103/384 (26%), Gaps = 119/384 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGKPGTPPNN---WK 774
HR G+KI+++ V NH+ ++ F QK Y +++ +D + N
Sbjct: 230 HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDF-PVSKTSRTNYETFAV 288
Query: 775 HI------NITSREVMR-----SQK-----------DVVQSFPLILM------------- 799
+ + EV ++ DV
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPD 348
Query: 800 --IITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYEIMNKF-----GATSNAKDLENVVN 850
I+ E + + +G G SV NY +A+ + +
Sbjct: 349 ALIVGEIWHDA---------SGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELT 399
Query: 851 AYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLLL---PGTAVTFAGDEL 905
P + H R T + + L GT + + GDE+
Sbjct: 400 RARMLYPEQAAQGLWNLLDSHDTERFLTSCGGN-EAKFRLAVLFQMTYLGTPLIYYGDEI 458
Query: 906 GMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN-DQENAGFSKAKSWLPVHPN 964
GM D P W ++N G
Sbjct: 459 GMAG----------------ATD-------PDCLRPMIWEEKEQNRGL------------ 483
Query: 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI--STPNNYVFILTRTEGSTS 1022
+ YK+L LR ++ G+ + + ++ RT
Sbjct: 484 ----------------FEFYKELIRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQH 527
Query: 1023 VYLIINLNSRTETVDLSDCIENGG 1046
V +++N +TV L G
Sbjct: 528 VGVVLNNRGEKQTVLLQVPESGGK 551
Score = 33.5 bits (77), Expect = 0.37
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGIGDLR 53
EW K VIYQI F + + ND G +
Sbjct: 126 EWAKEAVIYQIFPERFANGDPSNDPPGTEQ 155
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 99.4 bits (248), Expect = 1e-21
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKELG 610
W K+ + YQI F + + ND G L + G G+I+ +D+L +LG
Sbjct: 126 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLG 185
Query: 611 VETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
V ++ TP F + N YD ++ ++ FG + +LV L H +G
Sbjct: 186 VNAVYFTPLFKATTNH--KYDTEDYFQIDPQFGDKDTLKKLVDLCHERG 232
Score = 65.5 bits (160), Expect = 5e-11
Identities = 59/386 (15%), Positives = 110/386 (28%), Gaps = 136/386 (35%)
Query: 720 HRAGMKILVEFVPNHSSNKH----------------DWFIKSAQKIDPY---TNYYVWK- 759
H G+++L++ V NHS DWF + ++ Y +
Sbjct: 229 HERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAF 288
Query: 760 -------------------------------DG--LNGKPGTPPNNWKHINITSREVMRS 786
DG L+ W+ R V ++
Sbjct: 289 EPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFR---RVVKQA 345
Query: 787 QKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYE----IMNKF-GAT 839
D I+ E + S + +G +V NY +++ F
Sbjct: 346 NPDAY--------ILGEVWHES---------SIWLEGDQFDAVMNYPFTNAVLDFFIHQI 388
Query: 840 SNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPG 895
++A+ ++ L P + H R+ T+ D + G
Sbjct: 389 ADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFG 448
Query: 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955
T + GDE+G++ G D G R +W+
Sbjct: 449 TPCIYYGDEVGLDG----------------GHD-------PGCRKCMEWD---------- 475
Query: 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP--NNYVFI 1013
E K ++ Y+ + LR A+R G +K T N+
Sbjct: 476 -----------------ETKHDKDLFAFYQTVIRLRQAHAALRTGTFKFLTAEKNSRQIA 518
Query: 1014 LTRTEGSTSVYLIINLNSRTETVDLS 1039
R + ++ +++N + T+ L
Sbjct: 519 YLREDDQDTILVVMNNDKAGHTLTLP 544
Score = 32.3 bits (74), Expect = 1.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGIGDL 52
W K+ + YQI F + + ND G L
Sbjct: 126 AWVKDAIFYQIFPERFANGDTRNDPEGTL 154
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 98.2 bits (245), Expect = 4e-21
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKELG 610
+W K+TV YQI F + N G + G GII+ +DYL +LG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 611 VETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ ++LTP F S N YD +++ EV FG E L+ H KG
Sbjct: 190 ITGIYLTPIFRSPSNH--KYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Score = 74.3 bits (183), Expect = 1e-13
Identities = 59/388 (15%), Positives = 105/388 (27%), Gaps = 115/388 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---- 775
H G++++++ V NH + F + K + Y W T P
Sbjct: 233 HEKGIRVMLDAVFNHCGYEFAPF-QDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAF 291
Query: 776 ------INITSREVMR-----SQK------------DVVQSFPLILM------------- 799
+N + EV R + DV
Sbjct: 292 VPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPD 351
Query: 800 --IITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYEIMNKF-----GATSNAKDLENVVN 850
I+ E + + +G +V NY + +A+ N +
Sbjct: 352 VYILGEIWHDA---------MPWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMM 402
Query: 851 AYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPGTAVTFAGDELG 906
L S P+ + +G H +RI T D+ + G+ + GDE+G
Sbjct: 403 HVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIG 462
Query: 907 MESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYW 966
M G D R W+
Sbjct: 463 MTG----------------GND-------PECRKCMVWD--------------------- 478
Query: 967 TLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI--STPNNYVFILTRTEGSTSVY 1024
+ + K L LR ++R G+ + I +T+G +V
Sbjct: 479 ------PMQQNKELHQHVKQLIALRKQYRSLRRGEISFLHADDEMNYLIYKKTDGDETVL 532
Query: 1025 LIINLNSRTETVDLSDCIENGGDVAIFT 1052
+IIN + + + + V + T
Sbjct: 533 VIINRSDQKADIPIPLDARGTWLVNLLT 560
Score = 30.8 bits (70), Expect = 2.9
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGIGDL 52
+W K+TV YQI F + N G
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSR 158
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 97.7 bits (243), Expect = 6e-21
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 26/113 (23%)
Query: 550 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLK 607
R + +W + V Y F G L+G + E++DYL+
Sbjct: 84 RLLRPDWLQRPEMVGYVAYTDRF-------AGTLKG---------------VEERLDYLE 121
Query: 608 ELGVETLWLTPFYSG--PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV+ L L P D GY + ++ V D GTM+D L + + +G
Sbjct: 122 GLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRG 174
Score = 59.1 bits (143), Expect = 5e-09
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVW---KDGLNGKPGTPPNNW 773
G+ ++++ V NH + +H W K+ Y Y+ + G + T P +
Sbjct: 171 RGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIF 227
Score = 56.8 bits (137), Expect = 3e-08
Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 872 TRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931
+ + ++ + L G + + GDEL + ++Y
Sbjct: 473 DPGRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALL-------------------NDYA 513
Query: 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH-YSVYKDLTTL 990
+W + ++ A+ E + + + L +
Sbjct: 514 FEDVPEHAPDNRWVHRPQMDWALAERVR------------QEPSSPAGRVNTGLRHLLRV 561
Query: 991 RATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDV 1048
R + + + +P++ +L R + + N + T + + GD
Sbjct: 562 RRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGMVQVYNFSEETVMLPSHVLRDVLGDH 621
Query: 1049 AI 1050
Sbjct: 622 VQ 623
Score = 38.3 bits (89), Expect = 0.014
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 23/70 (32%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
I+ + RGV+ F +D++ + + G +QPE +
Sbjct: 274 IILYLANRGVEVFRLDAI------------AFIWKRLGTDC-----------QNQPEVHH 310
Query: 404 MLYKWRTLVE 413
+ R
Sbjct: 311 LTRALRAAAR 320
Score = 30.3 bits (68), Expect = 4.3
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 21 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
R + +W + V Y F G L+G R YLE LG+
Sbjct: 84 RLLRPDWLQRPEMVGYVAYTDRF-------AGTLKGVEERLDYLE-GLGVK 126
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 96.1 bits (239), Expect = 2e-20
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
W+ + + + G L+G + E++ YL+ELGV
Sbjct: 82 HAGWFGQPHML-----GYSAYADRFAGTLQG---------------VAERVPYLQELGVR 121
Query: 613 TLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L L PF G D G+ +S++ +V G+ +D L + G
Sbjct: 122 YLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAG 169
Score = 65.7 bits (160), Expect = 5e-11
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
AG+ + +FV NH+++ H W + Y +YY T P+ +
Sbjct: 166 REAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFA-----DRTVPDRY 214
Score = 44.5 bits (105), Expect = 2e-04
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 44/177 (24%)
Query: 875 ATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934
A + D + + + L +PG + + GDEL M ++
Sbjct: 466 ALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMV-------------------NDPGYRD 506
Query: 935 RDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH----YSVYKDLTTL 990
+ +W +H A++ S Y + L
Sbjct: 507 DPHRQHEGRW----------------LHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQ 550
Query: 991 RATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
RA GA+ I+ + VF LTR + S + N + + V+L+ +G
Sbjct: 551 RAALGALAADQALASIALNDPRVFALTRGD---SFIALHNFSDQLLDVELAAIGVDG 604
Score = 39.5 bits (92), Expect = 0.006
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 23/70 (32%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+ GV+ F +DS L + G ++Q E +
Sbjct: 265 AMLRLANLGVEAFRLDST------------AYLWKRIGTDC-----------MNQSEAHT 301
Query: 404 MLYKWRTLVE 413
+L R + +
Sbjct: 302 LLVALRAVTD 311
Score = 32.2 bits (73), Expect = 0.98
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
W+ + + + G L+G R YL+ LG+
Sbjct: 82 HAGWFGQPHML-----GYSAYADRFAGTLQGVAERVPYLQ-ELGVR 121
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 96.1 bits (239), Expect = 2e-20
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 555 EWWKNTVIYQILVPSFKD---SNNDGIGDLRGKNVRKRYLELTLG---LGIIEKIDYLKE 608
K VIYQI++ F D +NN+ + K ++ G G+ +K+ YLK+
Sbjct: 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQ 63
Query: 609 LGVETLWLTPFYSGPNGDI--------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV T+WL+P + GY + ++ + FG FD LV H G
Sbjct: 64 LGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNG 121
Score = 61.0 bits (148), Expect = 2e-09
Identities = 54/382 (14%), Positives = 100/382 (26%), Gaps = 120/382 (31%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQK--------------IDPYTNYYVWKDGLNGK 765
H+ G+K++V+FVPNHS+ A+ D Y+ ++
Sbjct: 118 HQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNW 177
Query: 766 PGTPPNNWKH-----------INITSREVMR------------------------SQKDV 790
WK+ ++ + + +
Sbjct: 178 DDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGF 237
Query: 791 VQSFPLILM------IITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GA 838
+S L ++ E Y + ++V ++++
Sbjct: 238 SKSLADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTF 297
Query: 839 TSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLLP 894
T DL N+VN + ++ H ++R + S + L
Sbjct: 298 TQTMYDLNNMVNQTGNEYK---YKENLITFIDNHDMSRFLSVNSNKANLHQALAFILTSR 354
Query: 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954
GT + G E M G D Y +R D
Sbjct: 355 GTPSIYYGTEQYMAG----------------GNDPY-------NRGMMPAFDTTTTA--- 388
Query: 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFIL 1014
+ L LR + A++ G NN V+I
Sbjct: 389 --------------------------FKEVSTLAGLRRNNAAIQYGTTTQRWINNDVYIY 422
Query: 1015 TRTEGSTSVYLIINLNSRTETV 1036
R + V + IN N+++
Sbjct: 423 ERKFFNDVVLVAINRNTQSSYS 444
Score = 34.0 bits (78), Expect = 0.29
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 26 EWWKNTVIYQILVPSFK--DSNNDGIGDLRG 54
K VIYQI++ F D+ N+ G
Sbjct: 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYG 34
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 93.8 bits (233), Expect = 9e-20
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 550 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLK 607
R N +W V V F GDL+G + +KI Y +
Sbjct: 86 RENNPDWILSNKQVGGVCYVDLFA-------GDLKG---------------LKDKIPYFQ 123
Query: 608 ELGVETLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
ELG+ L L P + P G D GY +S++ +V GT+ D E++ +H G
Sbjct: 124 ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Score = 60.2 bits (146), Expect = 2e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTN-YYVWKDGLNGKPGTPPNNWKHI 776
H AG+ +V+F+ NH+SN+H+W + A + N YY++ D P + I
Sbjct: 173 HEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRM--PDQYDRTLREI 228
Score = 46.0 bits (109), Expect = 6e-05
Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 39/159 (24%)
Query: 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQW 944
+ + L G + + GDE+G W
Sbjct: 470 LLYSIALSTGGLPLIYLGDEVGT-------------------------------LNDDDW 498
Query: 945 NDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH--YSVYKDLTTLRATSGAVRMGDY 1002
+ N W L AQ + + Y + + +R ++ G
Sbjct: 499 SQDSNKSDDSR--WAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGGRL 556
Query: 1003 -KISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+T N ++ R ++ N + +TV
Sbjct: 557 VTFNTNNKHIIGYIRNN---ALLAFGNFSEYPQTVTAHT 592
Score = 39.1 bits (91), Expect = 0.009
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 23/70 (32%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+ F GVD MD+V + + G + P+ +
Sbjct: 271 EMLFLANLGVDILRMDAV------------AFIWKQMGTSC-----------ENLPQAHA 307
Query: 404 MLYKWRTLVE 413
++ + ++
Sbjct: 308 LIRAFNAVMR 317
Score = 29.4 bits (66), Expect = 8.2
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 21 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
R N +W V V F GDL+G + Y LGL
Sbjct: 86 RENNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIPYF-QELGLT 128
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 93.2 bits (232), Expect = 2e-19
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
K Y++ F + I ++DY ELGV L+L+
Sbjct: 2 KLLSTYRLQPMKFSE--------------------------IRNRLDYFVELGVTHLYLS 35
Query: 618 PFY-SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P + P GYD+ ++ + + G E++ L+ SKG
Sbjct: 36 PVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKG 77
Score = 60.5 bits (147), Expect = 2e-09
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ----KIDPYTNYYVWKDGLNGKPGTPPNNW 773
G+ I+ + VPNH + H + + Y NY+ + + + P
Sbjct: 74 KSKGLGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEE--EEKIRIPILG 129
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 91.6 bits (228), Expect = 2e-19
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
W++ IY +L F ++ + ++Y T GII+K+DY++ +G
Sbjct: 4 ADWRSQSIYFLLTDRFARTDGSTTATCNTA----DQKYCGGTWQ-GIIDKLDYIQGMGFT 58
Query: 613 TLWLTPFYSGPNGDI-------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+TP + GY + + +++GT +D L +H +G
Sbjct: 59 AIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERG 111
Score = 56.6 bits (137), Expect = 3e-08
Identities = 52/375 (13%), Positives = 93/375 (24%), Gaps = 115/375 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP---------YTNYYVWKDGLNGKPGTPP 770
H GM ++V+ V NH P + ++D +
Sbjct: 108 HERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLG 167
Query: 771 NNWKH---INITSREVMR----SQK-------------DVVQSFPLILM----------I 800
+N ++ T V D V+
Sbjct: 168 DNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYC 227
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GATSNAKDLENVVNAYLK 854
I E Y D V NY I + + DL N++N
Sbjct: 228 IGEVLDGDPAYTCPYQNVMD------GVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS 281
Query: 855 SLPSGKWSSWMV---GGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGMES 909
P S+ + H R A+ Y+ D+ A N+ ++ G + +AG E
Sbjct: 282 DCP---DSTLLGTFVENHDNPRFAS-YTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAG 337
Query: 910 PILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLN 969
G D +R +
Sbjct: 338 ----------------GND-------PANREATWLS------------------------ 350
Query: 970 AQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK----ISTPNNYVFILTRT-EGSTSVY 1024
T Y + +R + + G ++ + + +GS V
Sbjct: 351 ---GYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVT 407
Query: 1025 LIINLNSRTETVDLS 1039
++ N + ++ LS
Sbjct: 408 ILSNKGASGDSYTLS 422
Score = 34.2 bits (79), Expect = 0.23
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 24/72 (33%)
Query: 26 EWWKNTVIYQILVPSFKDSN--NDGI----------GDLRGKNVRKRYLELTLGLDPCGS 73
W++ IY +L F ++ G +G + Y++ +G
Sbjct: 4 ADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQ-GMGF----- 57
Query: 74 SMNTDSNTIYIS 85
I+I+
Sbjct: 58 ------TAIWIT 63
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 91.4 bits (227), Expect = 6e-19
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 25/126 (19%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRY------LELTLGLGIIEKID 604
K + + V+YQI+V F D N N+ G L + GII KI+
Sbjct: 5 NKVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQ-----GIINKIN 59
Query: 605 --YLKELGVETLWLTPFYSGPNGDI----------GYDISNHTEVGKDFGTMEDFDELVK 652
YL ++GV +W++ + GY + + FGT+ DF LV
Sbjct: 60 DGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVD 119
Query: 653 LVHSKG 658
H+KG
Sbjct: 120 AAHAKG 125
Score = 65.6 bits (160), Expect = 6e-11
Identities = 53/386 (13%), Positives = 95/386 (24%), Gaps = 131/386 (33%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFI---------KSAQKIDPYTNYYVWKDGLNGKPGTPP 770
H G+K++++F PNH+S + + + YTN NG
Sbjct: 122 HAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSS 181
Query: 771 NNW-------------------------------------------KHINITS----REV 783
KH+ +
Sbjct: 182 LEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWIDMGIDGIRMDAVKHMPFGWQKSLMDE 241
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ + + V E + E A + + G S+ ++ K
Sbjct: 242 IDNYRPVF--------TFGEWFLSENEVDANNHYFANESGM--SLLDFRFGQKLRQVLRN 291
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLL 893
+ N ++ + V H + R P VD + L
Sbjct: 292 NSDNWYGFNQMIQDTASAYD---EVLDQVTFIDNHDMDRFMIDGGDPRKVDMALAVLLTS 348
Query: 894 PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953
G + G E M DP +N R ++
Sbjct: 349 RGVPNIYYGTEQYMTG-------NGDP-------NN---------RKMMSSFNKNT---- 381
Query: 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFI 1013
Y V + L++LR + A+ GD + N V++
Sbjct: 382 -------------RA------------YQVIQKLSSLRRNNPALAYGDTEQRWINGDVYV 416
Query: 1014 LTRTEGSTSVYLIINLNSRTETVDLS 1039
R G V + +N +S +
Sbjct: 417 YERQFGKDVVLVAVNRSSSSNYSITG 442
Score = 34.0 bits (78), Expect = 0.28
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 24 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKN 56
K + + V+YQI+V F D N N+ G L
Sbjct: 5 NKVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSG 39
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 91.0 bits (226), Expect = 7e-19
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLR---GKNVRKRY---LELTLGLGIIEKID 604
K+ + VIYQI F D N N+ G N+R + GII KI+
Sbjct: 8 NKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQ-----GIINKIN 62
Query: 605 --YLKELGVETLWLTPFYSGPNGDI-----------GYDISNHTEVGKDFGTMEDFDELV 651
YL +GV +W++ I GY + + +GT+ DF L+
Sbjct: 63 DGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLI 122
Query: 652 KLVHSKG 658
H+K
Sbjct: 123 AAAHAKN 129
Score = 62.2 bits (151), Expect = 6e-10
Identities = 50/378 (13%), Positives = 85/378 (22%), Gaps = 131/378 (34%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPY-------------TNYYVWKDGLNGKP 766
H +K++++F PNH+S A+ Y N + G +
Sbjct: 126 HAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFST 185
Query: 767 GTPPNNW---------------------------------------KHINITS----REV 783
KH+
Sbjct: 186 TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMNAVKHMPFGWQKSFMAA 245
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ + K V + + E + + + G S+ ++ K
Sbjct: 246 VNNYKPVF--------TFGQWFLGVNEVSPENHKFANESGM--SLLDFRFAQKVRQVFRD 295
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLL 893
T N L+ ++ V H + R + ++ TL
Sbjct: 296 NTDNMYGLKAMLEGSAADYA---QVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTS 352
Query: 894 PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953
G + G E M G D +R
Sbjct: 353 RGVPAIYYGTEQYMSG----------------GTDPD-------NRARIPSFSTSTT--- 386
Query: 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFI 1013
Y V + L LR + A+ G + NN V I
Sbjct: 387 --------------------------AYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLI 420
Query: 1014 LTRTEGSTSVYLIINLNS 1031
R GS + +N N
Sbjct: 421 YERKFGSNVAVVAVNRNL 438
Score = 34.4 bits (79), Expect = 0.23
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 24 QKEWWKNTVIYQILVPSFKDSN--NDGIGDL 52
K+ + VIYQI F D N N+ G
Sbjct: 8 NKQNFSTDVIYQIFTDRFSDGNPANNPTGAA 38
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 90.0 bits (223), Expect = 2e-18
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 598 GIIEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHS 656
+I+ + Y +LGV L+L+P + P + GYD+ +H+ + + G +++ L++ H+
Sbjct: 18 DVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHT 77
Query: 657 KG 658
G
Sbjct: 78 IG 79
Score = 48.4 bits (115), Expect = 1e-05
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFI-KSAQKIDPYTNYYVWKDGLNGKPG----TPPNNWK 774
H G+ I+ + VPNH + + + + YY + D +
Sbjct: 76 HTIGLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLD 135
Query: 775 HI 776
+
Sbjct: 136 TV 137
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 88.7 bits (220), Expect = 4e-18
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLR---GKNVRKRY---LELTLGLGIIEKID 604
+ VIYQI+ F D N N+ GDL +++K + + GII KI+
Sbjct: 8 NVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQ-----GIINKIN 62
Query: 605 --YLKELGVETLWLTPFYSGPNGDI------------GYDISNHTEVGKDFGTMEDFDEL 650
YL +GV +W+ + GY + FG+ DF L
Sbjct: 63 DGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNL 122
Query: 651 VKLVHSKG 658
+ H+
Sbjct: 123 INTAHAHN 130
Score = 66.4 bits (162), Expect = 3e-11
Identities = 56/385 (14%), Positives = 95/385 (24%), Gaps = 130/385 (33%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPY-------------TNYYVWKDGLNGKP 766
H +K++++F PNH+S + A+ Y Y+ G +
Sbjct: 127 HAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSS 186
Query: 767 GTPPNNW---------------------------------------KHINITS----REV 783
KH+ +
Sbjct: 187 YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMDS 246
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ S + V E + + E + G S+ ++ K
Sbjct: 247 ILSYRPVF--------TFGEWFLGTNEIDVNNTYFANESGM--SLLDFRFSQKVRQVFRD 296
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYSPDLVDAMNMLTLLLP 894
T L++++ + + + MV H + R S V+ TL
Sbjct: 297 NTDTMYGLDSMIQSTASDYN---FINDMVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSR 353
Query: 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954
G + G E M DP N R +
Sbjct: 354 GVPAIYYGTEQYMTG-------NGDP-------YN---------RAMMTSFNTSTT---- 386
Query: 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFIL 1014
Y+V K L LR ++ A+ G + NN V+I
Sbjct: 387 -------------------------AYNVIKKLAPLRKSNPAIAYGTTQQRWINNDVYIY 421
Query: 1015 TRTEGSTSVYLIINLNSRTETVDLS 1039
R G+ + IN N T
Sbjct: 422 ERKFGNNVALVAINRNLSTSYNITG 446
Score = 34.1 bits (78), Expect = 0.30
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 24 QKEWWKNTVIYQILVPSFKDSN--NDGIGDL 52
+ VIYQI+ F D N N+ GDL
Sbjct: 8 NVVNYSTDVIYQIVTDRFVDGNTSNNPTGDL 38
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 85.2 bits (211), Expect = 2e-17
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
W+ IY +L F ++N + Y + GII+ +DY++ +G +W+
Sbjct: 6 WRTQSIYFLLTDRFGRTDNST--TATCNTGNEIYCGGSWQ-GIIDHLDYIEGMGFTAIWI 62
Query: 617 TPFYSGPNGDI-------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+P D GY +V +FGT ++ L +H++G
Sbjct: 63 SPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111
Score = 54.0 bits (130), Expect = 2e-07
Identities = 54/374 (14%), Positives = 97/374 (25%), Gaps = 113/374 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP------YTNYYVWKDGLNGKPGTPPNNW 773
H GM ++V+ VP+H + DP + Y + D N + W
Sbjct: 108 HARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDN--LTMVEDCW 165
Query: 774 KH--------INITSREVMR----SQK-------------DVVQSFPLILM--------- 799
+ ++ T V D V
Sbjct: 166 EGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGV 225
Query: 800 -IITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GATSNAKDLENVVNAY 852
+ E + + Y D V NY I + ++ + +L N++ +
Sbjct: 226 YCVGEIDNGNPASDCPYQKVLD------GVLNYPIYWQLLYAFESSSGSISNLYNMIKSV 279
Query: 853 LKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGMESP 910
+ H R A Y+ D A N+L+ + G + +AG+E
Sbjct: 280 ASDCSDPTLLGNFIENHDNPRFAK-YTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAG- 337
Query: 911 ILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970
GK Y +R +
Sbjct: 338 ---------------GKVPY-------NREATWLS------------------------- 350
Query: 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-----ISTPNNYVFILTRTEGSTSVYL 1025
T Y+ +R + A T +N + + T GS + +
Sbjct: 351 --GYDTSAELYTWIATTNAIRKLAIAADSAYITYANDAFYTDSNTIAMAKGTSGSQVITV 408
Query: 1026 IINLNSRTETVDLS 1039
+ N S + L+
Sbjct: 409 LSNKGSSGSSYTLT 422
Score = 29.7 bits (67), Expect = 6.2
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 24/70 (34%)
Query: 28 WKNTVIYQILVPSFKDSN--NDGI----------GDLRGKNVRKRYLELTLGLDPCGSSM 75
W+ IY +L F ++ G +G Y+E +G
Sbjct: 6 WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIE-GMGF------- 57
Query: 76 NTDSNTIYIS 85
I+IS
Sbjct: 58 ----TAIWIS 63
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 86.1 bits (213), Expect = 3e-17
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 36/126 (28%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
++E Y+ S + + G R ++ + +G +
Sbjct: 225 ERERALYGAWYEFFPRSE-GTPHTPHGTFRT---------------AARRLPAIAAMGFD 268
Query: 613 TLWLTPFYS-------GPNG-------------DIGYDISNHTEVGKDFGTMEDFDELVK 652
++L P + G N IG H + GT++DFD V
Sbjct: 269 VVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVT 328
Query: 653 LVHSKG 658
G
Sbjct: 329 EAGKLG 334
Score = 78.4 bits (193), Expect = 6e-15
Identities = 53/363 (14%), Positives = 103/363 (28%), Gaps = 100/363 (27%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWK-DGLNGKPGTPPNNWK---H 775
+ G++I ++F S + H W K + ++ + DG PP ++
Sbjct: 331 GKLGLEIALDFALQCSPD-HPWVHK-------HPEWFHHRPDGTIAHAENPPKKYQDIYP 382
Query: 776 INITS---------REVMR---------------SQKDVVQSFPLI---------LMIIT 802
I + ++R K V +I ++ +
Sbjct: 383 IAFDADPDGLATETVRILRHWMDHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLA 442
Query: 803 EAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWS 862
EA++ T G S Y ++L + S
Sbjct: 443 EAFTR-----PAMMATLAQIGFQQSYTYFTWRN-----TKQELTEYLTELSGEAASYMRP 492
Query: 863 SWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPE 921
++ I ++ + +L L T ++G EL +P+
Sbjct: 493 NFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPL---------- 542
Query: 922 GYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHY 981
G + YL P W G +
Sbjct: 543 --REGSEEYLD-SEKYQLKPRDWTRAAREGT--------------------------TIA 573
Query: 982 SVYKDLTTLRATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINL---NSRTETV 1036
+ L T+R + A+R T V ++ +GS +V +++NL +++ TV
Sbjct: 574 PLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATV 633
Query: 1037 DLS 1039
L
Sbjct: 634 SLD 636
Score = 37.6 bits (87), Expect = 0.026
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRG 54
++E Y+ S + + G R
Sbjct: 225 ERERALYGAWYEFFPRSE-GTPHTPHGTFRT 254
Score = 30.7 bits (69), Expect = 3.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 344 ILEFWLKRGVDGFGMD 359
IL W+ GV F +D
Sbjct: 399 ILRHWMDHGVRIFRVD 414
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 82.2 bits (203), Expect = 3e-16
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 559 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTP 618
N + Q F+ D + + + L LG+ LWL P
Sbjct: 5 NGTMMQ----YFEWYLPDDGTLWTK---------------VANEANNLSSLGITALWLPP 45
Query: 619 FY-SGPNGDIGYDIS---------NHTEVGKDFGTMEDFDELVKLVHSKG 658
Y D+GY + V +GT + + ++ H+ G
Sbjct: 46 AYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAG 95
Score = 46.4 bits (110), Expect = 5e-05
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 720 HRAGMKILVEFVPNHS--SNKHDWFIKS-------AQKIDPYTNYYVWKD----GLNGKP 766
H AGM++ + V +H ++ +W Q+I W G
Sbjct: 92 HAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTY 151
Query: 767 GTPPNNWKHINIT 779
+ W H +
Sbjct: 152 SSFKWRWYHFDGV 164
Score = 46.0 bits (109), Expect = 6e-05
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
L + E +S + K+ Y T GT + + NKF S + ++ +L
Sbjct: 259 LFTVGEYWSYDINKLHNY--IMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLM 316
Query: 858 SGKWSSWM--VGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGM 907
+ + + V H S A + G F GD G+
Sbjct: 317 KDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGI 372
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 80.2 bits (198), Expect = 9e-16
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q F+ + NDG + + ++L ++G+ +W+
Sbjct: 2 NGTLMQ----YFEWYTPNDG-QHWKR---------------LQNDAEHLSDIGITAVWIP 41
Query: 618 PFY-SGPNGDIGYDIS---------NHTEVGKDFGTMEDFDELVKLVHSKG 658
P Y D GY V +GT + + + +HS+
Sbjct: 42 PAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRN 92
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF---GATSNAKDLENVVNAYLK 854
+ + E + + K+ Y + + + D+ +++ +
Sbjct: 256 MFTVAEYWQNNAGKLENYLNKTS--FNQSVFDVPLHFNLQAASSQGGGYDMRRLLDGTVV 313
Query: 855 SLPSGKWSSWMVGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGM 907
S K + V H + S A + G F GD G
Sbjct: 314 SRHPEKAVT-FVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGT 369
Score = 42.5 bits (100), Expect = 7e-04
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP---------YTNYYVWKDGLNGKPGTPP 770
H +++ + V NH + +A +++P W D G
Sbjct: 89 HSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTY 148
Query: 771 NNWK 774
+++K
Sbjct: 149 SDFK 152
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 75.2 bits (185), Expect = 3e-14
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 563 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS 621
+Q+L F +S G ++ K+D + GV +WL P
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNM---------------MMGKVDDIAAAGVTHVWLPPPSH 45
Query: 622 GPNGDIGYDISNHTEVGKD-FGTMEDFDELVKLVHSKG 658
+ + GY ++ +G + L+ +H KG
Sbjct: 46 SVSNE-GYMPGRLYDIDASKYGNAAELKSLIGALHGKG 82
Score = 36.6 bits (85), Expect = 0.044
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 22/102 (21%)
Query: 690 IHSVYLNPVYAGSGN-----QNWRAGNQNRAESME---------HRAGMKILVEFVPNHS 735
+ V+L P N + ++ + H G++ + + V NH
Sbjct: 35 VTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHR 94
Query: 736 SNKHDWFIKSAQKIDP--------YTNYYVWKDGLNGKPGTP 769
+ + + + + +D GT
Sbjct: 95 CADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTA 136
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 73.4 bits (180), Expect = 2e-13
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 26/118 (22%)
Query: 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGV 611
+++ + + + + E+ L E G
Sbjct: 120 EVNHTILQAFYWEMNTGEYATEHPEEANLWNL---------------LAERAPELAEAGF 164
Query: 612 ETLWLTPFYSG--PNGDIGYDISN---------HTEVGKDFGTMEDFDELVKLVHSKG 658
+WL P G D+GY + V +GT + + + +H+
Sbjct: 165 TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNND 222
Score = 45.3 bits (107), Expect = 9e-05
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 720 HRAGMKILVEFVPNHSS--NKHDWFIKSAQKID-PYTNYYVWKD----GLNGKPGTPPNN 772
H +K+ + V NH + + + D P W G NG+ N
Sbjct: 219 HNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWN 278
Query: 773 WKHINIT 779
+ + T
Sbjct: 279 GQCFDGT 285
Score = 41.1 bits (96), Expect = 0.002
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKFGATSNAKDLENVVNAYLKSL 856
+ + EA+ ++ + + L V ++ + + F N + ++ NA L +
Sbjct: 375 VFFVGEAWVEDVDDLKGF--LDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNS 432
Query: 857 PSGKWSSWMV---GGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGME 908
P + + V H R Y+ + A + G + D E
Sbjct: 433 P--GYENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWE 489
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 73.7 bits (180), Expect = 2e-13
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 31/120 (25%)
Query: 553 QKEWWKNTVIYQI--LVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELG 610
Q + V+++ +F + I + +D E G
Sbjct: 604 QNAALDSRVMFEGFSNFQAFATKKEEYTNV-----------------VIAKNVDKFAEWG 646
Query: 611 VETLWLTPFYSGPNG--------DIGYDISNHTEVGKD----FGTMEDFDELVKLVHSKG 658
V + P Y GY ++ ++G +GT +D + +K +HSKG
Sbjct: 647 VTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKG 706
Score = 45.2 bits (106), Expect = 1e-04
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY----VWKDGLNGKPGTPPNNWK 774
H G+K++ ++VP+ + + +A ++D Y + + + +
Sbjct: 703 HSKGIKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQ 761
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 71.8 bits (176), Expect = 5e-13
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 564 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS-G 622
++ + ++ D G G ++ + + + + + + + PF++
Sbjct: 4 KVQLITYADRL--GDGTIKS---------------MTDILRTRFDGVYDGVHILPFFTPF 46
Query: 623 PNGDIGYDISNHTEVGKDFGTMEDFDELVK 652
D G+D +HT+V + G+ +D EL K
Sbjct: 47 DGADAGFDPIDHTKVDERLGSWDDVAELSK 76
Score = 44.4 bits (105), Expect = 2e-04
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 723 GMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKD 760
I+V+ + NH S + F K + Y ++
Sbjct: 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMS 116
Score = 32.9 bits (75), Expect = 0.70
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 23/73 (31%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
I + V +D+V + AG P+T++
Sbjct: 177 IFDQMAASHVSYIRLDAV------------GYGAKEAGTSCFMT-----------PKTFK 213
Query: 404 MLYKWRTLVEKFG 416
++ + R K G
Sbjct: 214 LISRLREEGVKRG 226
Score = 29.0 bits (65), Expect = 8.9
Identities = 26/238 (10%), Positives = 59/238 (24%), Gaps = 56/238 (23%)
Query: 815 YYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT-- 872
T D G + ++ +D++N+VN + ++ ++
Sbjct: 285 VLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLY 344
Query: 873 RIATRYSPDL------VDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFG 926
++ + Y L A + LPG + L ++ D E
Sbjct: 345 QVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGALAGKN---------DMELLRKT 395
Query: 927 KDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKD 986
+ RD +R + + ++ ++
Sbjct: 396 NNG-----RDINRHYYSTAE---------------------IDENLKRPV----VKALNA 425
Query: 987 LTTLRAT----SGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
L R G + + + R E S + L + +
Sbjct: 426 LAKFRNELDAFDGTFSY----TTDDDTSISFTWRGETSQAT-LTFEPKRGLGVDNTTP 478
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 68.8 bits (168), Expect = 4e-12
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q ++ NDG + + L + G+ +W+
Sbjct: 4 NGTMMQ----YYEWHLENDG-QHWNR---------------LHDDAAALSDAGITAIWIP 43
Query: 618 PFY-SGPNGDIGYDISNHTEVGK---------DFGTMEDFDELVKLVHSKG 658
P Y D+GY + ++G+ +GT + + + S
Sbjct: 44 PAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSND 94
Score = 41.0 bits (96), Expect = 0.002
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 8/117 (6%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGT--HLSVNYEIMNKFGATSNAKDLENVVNAYLKS 855
L ++ E + + + Y + + + + +NY + D+ N++ L
Sbjct: 256 LFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRAS-QQGGSYDMRNILRGSLVE 314
Query: 856 LPSGKWSSWMVGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGME 908
+ V H + S A + G F GD G+
Sbjct: 315 AHPMHAVT-FVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIP 370
Score = 40.6 bits (95), Expect = 0.002
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 13/73 (17%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKD-------------GLNGKP 766
+ + + V NH A +++P + G N
Sbjct: 91 KSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAY 150
Query: 767 GTPPNNWKHINIT 779
W H N
Sbjct: 151 SDFKWRWFHFNGV 163
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 68.0 bits (166), Expect = 7e-12
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q F+ NDG + LK G+ +W+
Sbjct: 6 NGTMMQ----YFEWYLPNDG-NHWNR---------------LNSDASNLKSKGITAVWIP 45
Query: 618 PFYSGPNG-DIGYDISNHTEVGK---------DFGTMEDFDELVKLVHSKG 658
P + G + D+GY + ++G+ +GT V + + G
Sbjct: 46 PAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNG 96
Score = 39.5 bits (92), Expect = 0.006
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP----------YTNYYVWKDGLNGKPGTP 769
G+++ + V NH + A +++P YT + G+ T
Sbjct: 93 KNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTH 152
Query: 770 PN---NWKHINIT 779
+ W H +
Sbjct: 153 SSFKWRWYHFDGV 165
Score = 39.1 bits (91), Expect = 0.006
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAK---DLENVVNAYLK 854
+ + E + L + Y + H + + S + D+ N+ N +
Sbjct: 261 MFAVAEFWKNDLGAIENYLQKTN--WNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVV 318
Query: 855 SLPSGKWSSWMVGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGM 907
+ V H S A + G F GD G+
Sbjct: 319 QRHPSHAVT-FVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGI 374
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 60.6 bits (147), Expect = 1e-09
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDI----------GYDISNHTEVGKDFGTMEDF 647
+ + + + G + +P G+ Y +++ + GT ++F
Sbjct: 18 TLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEF 77
Query: 648 DELVKLVHSKG 658
E+ G
Sbjct: 78 KEMCAAAEEYG 88
Score = 42.5 bits (100), Expect = 6e-04
Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 52/232 (22%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ----------KIDPYTNYY-VWKDGLNGKP-- 766
G+K++V+ V NH++ + + +I +++ + V ++ L G
Sbjct: 85 EEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDW 144
Query: 767 --GTPP---------NNW-------------KHINITSREVMRSQKDVVQSFP--LILMI 800
KHI + +
Sbjct: 145 NTQNTQVQSYLKRFLERALNDGADGFRFDAAKHIELPDDGSY--GSQFWPNITNTSAEFQ 202
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK 860
E S + A Y D T + + I + + + N+ + Y + + K
Sbjct: 203 YGEILQDSASRDAAYANYMDV--TASNYGHSIRSAL--KNRNLGVSNISH-YASDVSADK 257
Query: 861 WSSWMVGGHSITRIATRYSPDLVD-----AMNMLTLLLPGTAVTFAGDELGM 907
+W V H S + D ++ T + F+ E G
Sbjct: 258 LVTW-VESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGG 308
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 58.3 bits (141), Expect = 8e-09
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDI--------GYDISNHTEVGK---DFGTMED 646
I KI E G+ +WL P G +G +D+ + + G FG+ E+
Sbjct: 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEE 88
Query: 647 FDELVKLVHSKG 658
L++ H+ G
Sbjct: 89 LVRLIQTAHAYG 100
Score = 35.2 bits (81), Expect = 0.10
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHIN 777
H G+K++ + V NH + + +P+ Y W D G N+ +
Sbjct: 97 HAYGIKVIADVVINHRAGGDLEW-------NPFVGDYTWTDFSKVASGKYTANYLDFH 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 4e-08
Identities = 92/686 (13%), Positives = 174/686 (25%), Gaps = 296/686 (43%)
Query: 97 VKTWSRRWIVVNH-----------------EQI-----SRLPTRT---------VSSLNI 125
+ +S R + ++H Q+ LP T + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 126 ICKY--FYMKKF-KHRIDAKNDSLHLI-----DSVLGVPTVDIESLFSTKPPSHSMCLTD 177
+ K+ + ++ + L+L + L DI +L + + L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIHALAAKLLQENDTTLVK 118
Query: 178 SKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGL-PSTSRPDIE-- 234
+K + +Y+ R + K P S L + + +
Sbjct: 119 TKELIK--------------NYITARIMAKRPFDKKS-------NSALFRAVGEGNAQLV 157
Query: 235 ----GEGPSSEKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLP 290
G+G +++ Y+ + L+ L + Y L + ++ TL
Sbjct: 158 AIFGGQG-NTDDYFEE----------LRDLYQTYHV--LVGDLIKFSAETLSELIRTTLD 204
Query: 291 SPPDYPRVHQPHCAVPNPKVLMVPNAD-IAWNP-SCQTTVVDCQMFCYEIT--------- 339
+ + + + NP P+ D + P SC V Q+ Y +T
Sbjct: 205 AEKVFTQGLNILEWLENPS--NTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPG 261
Query: 340 --------LLLC-------------------------ILE--FWLKRGV----------- 353
+ F++ GV
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSL 319
Query: 354 ----------DGFG----MDSV--LKLYEHESFANE--PRLPEAAGRPDSDPTAYDHIY- 394
+ G M S+ L + + + N+ LP +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-----------KQVEI 368
Query: 395 ----TIDQ------PETYEMLYKWRTLVEKFG-----NQS----ADRQPSCADKF-AI-- 432
P++ LY + K +QS ++R+ +++F +
Sbjct: 369 SLVNGAKNLVVSGPPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 433 --HSVYLNPVYA------GSGNQNWRAGNQNRAESMEHRADLLHQVVSHFIYCGI-VDDT 483
HS L P N ++ A D+ I V DT
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNA------------KDI-----------QIPVYDT 462
Query: 484 SALMVMNERRLSTIASRTMAAMSLGFIVMVTPWTIQEVVAACTGSKMNWVALLVLLSTAS 543
+ L R ++ IV I+ V W A+
Sbjct: 463 F-----DGSDL-----RVLSGSISERIV---DCIIRLPV--------KWETTTQF--KAT 499
Query: 544 SVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI 603
+L F G+G L +N G+ +I
Sbjct: 500 HIL----------------------DFGPGGASGLGVLTHRNKDGT------GVRVIV-- 529
Query: 604 DYLKELGVETLWLTPFYSGPNGDIGY 629
TL P+ D G+
Sbjct: 530 -------AGTL-----DINPDDDYGF 543
Score = 55.1 bits (132), Expect = 1e-07
Identities = 93/525 (17%), Positives = 151/525 (28%), Gaps = 215/525 (40%)
Query: 627 IGYDISNHTEVGKDFGTMEDFDELVKL--------------VHSKGKQKISQKQTKNRSH 672
+GY +S+ E K + FD+++ L +H+ + + + T
Sbjct: 65 LGY-VSSLVEPSK----VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 673 QLYCHMYMYAICADKFAIH----SVYLNPVYAGS-------GNQNWRAGNQNR--AESME 719
+ Y+ A K S V G+ G Q GN + E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTDDYFEE--- 172
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP-----------YT---NYYVWKDGLNGK 765
L + + D SA+ + +T N W L
Sbjct: 173 -------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENP 222
Query: 766 PGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTH 825
TP ++ + S + S PLI + ++A Y T G
Sbjct: 223 SNTPDKDY----LLSIPI---------SCPLI----------GVIQLAHYVVTAKLLGFT 259
Query: 826 LSVNYEIMNKF-GATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD 884
E+ + GAT +++ +V A + + W S+ V
Sbjct: 260 PG---ELRSYLKGATGHSQG---LVTAVAIAE-TDSWESF-----------------FVS 295
Query: 885 AMNMLTLLL----------PGTAVTFA-------GDELGMESPIL--------------R 913
+T+L P T++ + +E G+ SP+L
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-GVPSPMLSISNLTQEQVQDYVN 354
Query: 914 YEDQRDPEG---YIF---GKDNY--------L--------KVCR----DGSRVPFQWNDQ 947
+ P G I G N L K D SR+PF +
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF---SE 411
Query: 948 ENAGFSKAKSWLPVHPNYWTLNAQAEKKTKP--SHY------SVYKDLTTLRATSGAVRM 999
FS +LPV P SH + KDL + A
Sbjct: 412 RKLKFS--NRFLPV--------------ASPFHSHLLVPASDLINKDLVKNNVSFNA--- 452
Query: 1000 GDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETV--DLSDCI 1042
D +I P V+ T GS +L + ++ + DCI
Sbjct: 453 KDIQI--P---VY-DTFD-GS-------DLRVLSGSISERIVDCI 483
Score = 52.0 bits (124), Expect = 1e-06
Identities = 88/582 (15%), Positives = 160/582 (27%), Gaps = 209/582 (35%)
Query: 270 SMTLPH---QYSMSMPP-----------RHSMTLPSPPDYPRVHQPHCAVPN--PKVLMV 313
+TL H ++ + +P + + LP P + K L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 314 PNADIAWNPSCQTTVVDCQMFCYEITLLLCILEF---WLKRGVD------GFGMDS---- 360
++ + + Q V L LC+ EF +L G D ++
Sbjct: 68 VSSLVEPSKVGQFDQV----------LNLCLTEFENCYL-EGNDIHALAAKLLQENDTTL 116
Query: 361 -----VLKLY-EHESFANEP-------RLPEAAGRPDSDPTAYDHIYTI--DQ--PETY- 402
++K Y A P L A G ++ + I Q + Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA------QLVAIFGGQGNTDDYF 170
Query: 403 -EM--LYK-WRTLVEKFGNQSAD------RQPSCADKFAIHSVYLNPVYAGSGNQNWRAG 452
E+ LY+ + LV SA+ R A+K + + W
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI---------LEW--- 218
Query: 453 NQNRAESMEHRAD------LLHQVVS----------HF-IYCGIVDDTSALMVMNERRLS 495
+E+ ++ LL +S H+ + ++ T + S
Sbjct: 219 -------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL------RS 265
Query: 496 TIASRTMAAMSLGFIVMVTPWTIQEVVAACTGSKMNWVALLVLLSTASSVLSS--VRCNQ 553
+ T + L V A +W + V + A +VL VRC +
Sbjct: 266 YLKGATGHSQGL-------------VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 554 KEWWKNTVIYQILVPS-FKDSNNDGIGD----LRGKNVRKRYLELTLGLGIIEKIDYL-K 607
L PS +DS + G L N+ + ++ + ++
Sbjct: 313 ------AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--------DYVNKTNS 358
Query: 608 ELGVETLWLTPFYSGPNGDIGYDIS--NHTEVGKD-F---GTMEDFDELVKLVHS-KGKQ 660
L P + IS N G G + L + K
Sbjct: 359 HL--------P----AGKQVE--ISLVN----GAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 661 KISQKQTKNRSHQLYCHM------------YMY----AICAD----KFAIHSVYLN-PVY 699
+ Q + +L + I D + ++ + PVY
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 700 AGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDW 741
+ R + + +E + I+ V W
Sbjct: 461 DTFDGSDLRVLSGSISERI---VDC-IIRLPV--------KW 490
Score = 50.4 bits (120), Expect = 4e-06
Identities = 45/242 (18%), Positives = 66/242 (27%), Gaps = 102/242 (42%)
Query: 544 SVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL-----GLG 598
S+L V N L F G +GK +R+ Y + G
Sbjct: 1660 SILDIVINNPVN----------LTIHF--------GGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE---------------------- 636
EKI KE+ + T + G + + T+
Sbjct: 1702 KTEKI--FKEINEHSTSYT--FRSEKGLL-----SATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 637 --VGKDF---------------GTMEDFDELVKLVHSKGK--QKISQKQTKNRSHQLYCH 677
F M + LV++V +G Q + RS
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRS------ 1805
Query: 678 MYMYAICADKFAIHSVYLNP--VYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHS 735
Y + A +NP V A + Q E + R G LVE V N+
Sbjct: 1806 --NYGMIA---------INPGRVAASFS----QEALQYVVERVGKRTGW--LVEIV-NY- 1846
Query: 736 SN 737
N
Sbjct: 1847 -N 1847
Score = 46.2 bits (109), Expect = 7e-05
Identities = 70/417 (16%), Positives = 124/417 (29%), Gaps = 137/417 (32%)
Query: 596 GLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKL-- 653
G G + DY +EL L+ T Y GD+ I E EL++
Sbjct: 162 GQGNTD--DYFEEL--RDLYQT--YHVLVGDL---IKFSAET---------LSELIRTTL 203
Query: 654 ----VHSKGKQKISQKQTKNRSH------------------QLYCHMYMYAICADKFAIH 691
V ++G + + + + QL H Y + A
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AH---YVVTAKLLGFT 259
Query: 692 SVYLNPVYAG-SGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDW--FIKSAQK 748
L G +G H G ++ + W F S +K
Sbjct: 260 PGELRSYLKGATG----------------HSQG--LVTAVAIAETD---SWESFFVSVRK 298
Query: 749 IDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSP- 807
+ G+ P + ++ ++ + + P SP
Sbjct: 299 ---AITVLFFI-GVRCYEAYP-----NTSLPP-SILEDSLENNEGVP----------SPM 338
Query: 808 ------SLEKVAKYYGTGDTQGTHLSVNYEI----MNKFGA-----TSNAKDLENVVNAY 852
+ E+V Y + +HL ++ +N GA + + L +
Sbjct: 339 LSISNLTQEQVQDYV---NKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQSLYGLNLTL 393
Query: 853 LK-SLPSGKWSSWM-------VGGHSITRIATRY-SPDLVDAMNMLTLLLPGTAVTFAGD 903
K PSG S + + +A+ + S LV A +++ L V+F
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 904 ELGMESPILRY-----EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955
++ + P+ Y D R G I ++ R+P +W E KA
Sbjct: 454 DIQI--PV--YDTFDGSDLRVLSGSISE-----RIVDCIIRLPVKW---ETTTQFKA 498
Score = 32.7 bits (74), Expect = 0.86
Identities = 50/294 (17%), Positives = 84/294 (28%), Gaps = 117/294 (39%)
Query: 3 WVALLVLLSTASSVLSS--VRCNQKEWWKNTVIYQILVPSF-KDSNNDGIGD----LRGK 55
W + V + A +VL VRC + L PS +DS + G L
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYE------AYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 56 NVRKRYLELTLGLDPCGSSMNT---DSNTIYISFWMNCP---ILT------TAVKTWSRR 103
N+ + ++ + + N+ + IS +N +++ + R+
Sbjct: 343 NLTQEQVQDYV------NKTNSHLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKK--FKHR---IDAKNDSLHLIDSVLGVPTV 158
+ SR+P F +K F +R + +
Sbjct: 396 AKAPSGLDQSRIP-------------FSERKLKFSNRFLPVAS----------------- 425
Query: 159 DIESLFSTKPPSHSMCLTDSKHQCQ----GQNFLFQGR----PVNLMSY--VLGRELRKH 208
P HS L + N F + PV Y G +LR
Sbjct: 426 ----------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV----YDTFDGSDLRVL 471
Query: 209 PPHSTPHL-------P------------HVCC--P---SGLPS-TSRPDIEGEG 237
+ + P H+ P SGL T R + +G G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR-NKDGTG 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 6e-07
Identities = 71/606 (11%), Positives = 150/606 (24%), Gaps = 225/606 (37%)
Query: 340 LLLCILEFWLKRGVDGFGMDSVLKL-YE--HESFANEPRLP--------EAAGRPDSDPT 388
L L + V F ++ VL++ Y+ E R P E R +D
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 389 AYDHIYTIDQPETYEMLYKWRTLVEK--------------FGNQS--ADRQPSCADKFAI 432
+ Y + + + Y L R + + G D C + +
Sbjct: 125 VFAK-YNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWVALD---VCLS-YKV 176
Query: 433 HSVYLNPVYAGSGNQNW-RAGNQNRAES-MEHRADLLHQ--------------------- 469
++ W N N E+ +E LL+Q
Sbjct: 177 QCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 470 ----------------------------VVSHF-IYCGIVDDTSALMVMNERRLSTIASR 500
+ F + C I+ T V + +T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 501 TMAAMSLGFIVMVTPWTIQEVVAACTGSK-------MNWVALLVLLSTASSVLSSVRCNQ 553
++ S+ TP ++ ++ + + L S + S+R
Sbjct: 290 SLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL----SIIAESIRDGL 341
Query: 554 KEW--WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL---GLGIIEKIDYLKE 608
W WK + + L RK + L++ I +
Sbjct: 342 ATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----- 391
Query: 609 LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668
+ +W D +V +H + K++
Sbjct: 392 --LSLIWFDVIK------------------------SDVMVVVNKLHKYSLVEKQPKEST 425
Query: 669 NRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILV 728
+Y + + +++A+H ++ +
Sbjct: 426 ISIPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSD--------------------- 462
Query: 729 EFVPNHSSNKHDWFI-------KSAQKIDPYTNYYV---W------KDGLNGKPGTPPNN 772
+ +P + I + +++ + ++ + D N
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 773 W--------KHI--NITSRE----------------VMRSQ-KDVVQSFPLILM-----I 800
+I N E ++ S+ D+++ + LM I
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEAI 579
Query: 801 ITEAYS 806
EA+
Sbjct: 580 FEEAHK 585
Score = 44.1 bits (103), Expect = 3e-04
Identities = 63/439 (14%), Positives = 100/439 (22%), Gaps = 162/439 (36%)
Query: 131 YMKKFKHRIDAKN--DSLHLI------DSVLGVPTVDIES-----LFSTKPPSHSMCLTD 177
+ F D K+ D I D ++ + +K +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 178 SKHQCQGQNFLF-------QGRPVNLMSYVLGRE-LRKHPPHSTPHLPHVCCP------- 222
+ FL + + Y+ R+ L + +V
Sbjct: 85 EVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLR 141
Query: 223 SGLPS-TSRPDI-----EGEGPS--------SEK---------YWGDILERTVSSNSLQA 259
L ++ G G + S K +W ++ L+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 260 LQRVY--------PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHC-----AVP 306
LQ++ HS + + S+ L S P Y C V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKP-YEN-----CLLVLLNVQ 254
Query: 307 NPKVLMVPNADIAWNPSCQ---TT----VVDCQMFCYEITLLLCILEFWLKRGVDGFGMD 359
N K A+N SC+ TT V D L D
Sbjct: 255 NAKAWN------AFNLSCKILLTTRFKQVTDFLSAATTT-------HISLDHHSMTLTPD 301
Query: 360 SVLKLYEHESFAN-----EPRLPEAA-----------GRPDSDPTA----YDHIYTIDQ- 398
V L LP D A + H D+
Sbjct: 302 EVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKL 355
Query: 399 ------------PETYEMLYK-------------------W--------RTLVEKFGNQS 419
P Y ++ W +V K S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 420 -ADRQPSCADKFAIHSVYL 437
++QP +I S+YL
Sbjct: 416 LVEKQP-KESTISIPSIYL 433
Score = 38.7 bits (89), Expect = 0.013
Identities = 66/467 (14%), Positives = 134/467 (28%), Gaps = 155/467 (33%)
Query: 626 DIGY-DISNHTEVGKDFGTMEDFD-----ELVKLVHSKGKQK--ISQKQTKNRSHQLYCH 677
Y DI + E F +++FD ++ K + SK + I K + + +L+
Sbjct: 15 QYQYKDILSVFE--DAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-- 68
Query: 678 MYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVE-------- 729
+ + + + + ++ V N + + + E + ++ +E
Sbjct: 69 ---WTLLSKQEEMVQKFVEEVLRI--NYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 730 ---FVPNH-SSNKHDWFIKSA-QKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVM 784
F + S + ++ A ++ P V ++G G+ K + +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP--AKNV---LIDGVLGSG----KTW-VAL-DVC 171
Query: 785 RSQKDVVQSFPL-IL-MIITEAYSPS--LEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS 840
S K V I + + SP LE + K + N+ + +S
Sbjct: 172 LSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-------YQIDPNWTSRSDH--SS 221
Query: 841 NAKDLENVVNAYLKSLPSGK------------WSSWMV---GGHSITRIATRYSP--DLV 883
N K + + A L+ L K ++ + TR+ D +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 884 DAMNMLTLLLPGTAVTFAGDE--------LGME-----------SPIL------------ 912
A + L ++T DE L +P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 913 -RYE------------------DQRDPEGYIFGKDNY--LKVCRDGSRVPFQ-----WND 946
++ + +P Y + + L V + +P W D
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 947 ------QENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDL 987
S + EK+ K S S+ +
Sbjct: 399 VIKSDVMVVVNKLHKYSLV-------------EKQPKESTISIP-SI 431
Score = 37.5 bits (86), Expect = 0.025
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 37/188 (19%)
Query: 879 SPDLVDAMNML--TLLLPGTAVT--FAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934
S D V L TLL + F + L + + Y F
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----------RIN---YKFLMSPIKTEQ 102
Query: 935 RDGSRVPFQWNDQENAGFSKAKSWLPVH----PNYWTLNAQAEKKTKPSHY-SVY----- 984
R S + + +Q + ++ + + + Y L QA + +P+ +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGS 161
Query: 985 -KDLTTLRATSGAVRMGDYKI-STPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCI 1042
K T + YK+ + +F L ++ ++ L +D +
Sbjct: 162 GK--TWV--ALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 1043 ENGGDVAI 1050
+ I
Sbjct: 216 RSDHSSNI 223
Score = 37.5 bits (86), Expect = 0.026
Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 66/267 (24%)
Query: 5 ALLVLLSTASS-VLSS--VRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRY 61
LLVLL+ ++ ++ + C +IL+ + D + ++ +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSC------------KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 62 LELTLGLDPCGSSMNTDSNTIYISFWMNCP-----------------ILTTAVKTWSRRW 104
+TL D + ++ + +++C I+ +++ W
Sbjct: 294 HSMTLTPD--------EVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLI-DSVLGVPTVDIESL 163
H +L T SSLN++ Y K F L + S +PT+ + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--------RLSVFPPSAH-IPTILLSLI 395
Query: 164 FSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLG--RELRKHPPHSTP-H---LP 217
+ S M + + H + L + +P + EL+ + H +
Sbjct: 396 WFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 218 HVCCPSGLPSTSRPDIEGEGPSSEKYW 244
H P S P ++Y+
Sbjct: 452 HYNIPKTFDSDDLIP-----PYLDQYF 473
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 50.1 bits (119), Expect = 3e-06
Identities = 8/96 (8%), Positives = 25/96 (26%), Gaps = 24/96 (25%)
Query: 572 DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDI---- 627
+ + D + ++ + G +W+ + +
Sbjct: 26 NVVREAPNDWYN--------------ILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSK 71
Query: 628 -----GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
GY + + G+ +G+ + + G
Sbjct: 72 SGGGEGYFWHDFNKNGR-YGSDAQLRQAASALGGAG 106
Score = 33.5 bits (76), Expect = 0.40
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKD 760
AG+K+L + VPNH + + +I+ W++
Sbjct: 103 GGAGVKVLYDVVPNHMNRGYPDK-----EINLPAGQGFWRN 138
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 40.6 bits (95), Expect = 0.003
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 555 EWWKNTVIYQILVPSF-KDSNNDGIG-DLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+ ++ VIY+ V F D + DG + G + EK+DYL++LGV
Sbjct: 263 KGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGT-----FA------AFSEKLDYLQKLGVT 311
Query: 613 TLWLTPFYS 621
+ L P S
Sbjct: 312 HIQLLPVLS 320
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 40.1 bits (93), Expect = 0.004
Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 21/175 (12%)
Query: 599 IIEKIDYLKELGVETLWLTPFYSGPNG--------DIGYDISNHTEVGKD----FGTMED 646
I + D K G+ T L P Y+ D GY ++ ++G +G+ ED
Sbjct: 688 IAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDED 747
Query: 647 FDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYL-NPVYAGSGNQ 705
++ +H G Q I+ Q+Y A+ + H
Sbjct: 748 LRNALQALHKAGLQAIADWVPD----QIYNLPGKEAVTVTRSDDHGTTWEVSPIKNVVYI 803
Query: 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKD 760
G + G + L + + + IDP W
Sbjct: 804 TNTIGGGEYQKKY----GGEFLDTLQKEYPQLFSQVYPVTQTTIDPSVKIKEWSA 854
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 39.7 bits (93), Expect = 0.005
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
K+ VIY++ V F + + RG Y G K YL LGV +
Sbjct: 176 QKDDVIYEVHVRGFTEQDTSIPAQYRGT-----YY------GAGLKASYLASLGVTAVEF 224
Query: 617 TP 618
P
Sbjct: 225 LP 226
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 38.9 bits (90), Expect = 0.007
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 598 GIIEKID-YLKELGVETLWLTPFYSGPNGDI--GYDISNHTEVGKDFGTMEDFDELVKLV 654
+ ++ + YL G + ++P G E+ G F ++V
Sbjct: 15 DVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRC 74
Query: 655 HSKG 658
+ G
Sbjct: 75 SAAG 78
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 39.0 bits (90), Expect = 0.008
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 598 GIIEKID-YLKELGVETLWLTPFYSGPNGDI----GYDISNHTEVGKDFGTMEDFDELVK 652
I ++ + +L+ G + ++P D + G F ++ +
Sbjct: 23 DIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTR 82
Query: 653 LVHSKG 658
+ G
Sbjct: 83 RCNDAG 88
Score = 32.8 bits (74), Expect = 0.68
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 706 NWRAGNQNRAESME---HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL 762
N R+G+++ M + AG++I V+ V NH + + + NY G
Sbjct: 68 NTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGS 127
Query: 763 NG-KPGTPPNNW 773
NN+
Sbjct: 128 GDFHSPCEVNNY 139
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 38.0 bits (89), Expect = 0.020
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
W +T+IY+ V + + ++RG Y LG I+YLK+LG+ L L
Sbjct: 148 WGSTIIYEAHVKGLTYLHPEIPVEIRGT-----YK----ALGHPVMINYLKQLGITALEL 198
Query: 617 TP 618
P
Sbjct: 199 LP 200
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.025
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 22/39 (56%)
Query: 349 LKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDP 387
LK+ + + LKLY DS P
Sbjct: 22 LKK------LQASLKLYA----------------DDSAP 38
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 37.4 bits (87), Expect = 0.031
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 555 EWWKNTVIYQILVPSFKD-SNNDGIGD----LRGKNVRKRYLELTLGLGIIEKIDYLKEL 609
+ ++ VIY+ V +D +++ I G + IEK+DYLK+L
Sbjct: 147 KTREDAVIYEAHV---RDFTSDPAIAKDLTKPFGT-----FE------AFIEKLDYLKDL 192
Query: 610 GV 611
GV
Sbjct: 193 GV 194
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 36.5 bits (85), Expect = 0.051
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETL 614
K+TVIY++ V F D ++RG Y G+ + I YLK+LG+ T+
Sbjct: 171 LKDTVIYEVHVKGFTKLRLDLPENIRGT-----YE------GLASEQMISYLKDLGITTV 219
Query: 615 WLTP 618
L P
Sbjct: 220 ELMP 223
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 36.8 bits (85), Expect = 0.052
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 555 EWWKNTVIYQILVPSFKD-SNNDGIGD----LRGKNVRKRYLELTLGLGIIEKIDYLKEL 609
+ ++ VIY+ V +D +++ I G + IEK+DYLK+L
Sbjct: 454 KTREDAVIYEAHV---RDFTSDPAIAKDLTKPFGT-----FE------AFIEKLDYLKDL 499
Query: 610 GV 611
GV
Sbjct: 500 GV 501
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 36.1 bits (84), Expect = 0.060
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 32/126 (25%)
Query: 541 TASSVLSSVRC-NQKEWWKN--TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGL 597
S ++ + N + + K +IY+I V +F G G
Sbjct: 80 GPSQIIQESKEFNNETFLKKEDLIIYEIHVGTFTPE-----GTFEG-------------- 120
Query: 598 GIIEKIDYLKELG---VETLWLTPFYSGPNGDI--GYDISNHTEVGKDFGTMEDFDELVK 652
+I K+DYLK+LG +E + + F G GYD V +G E F +LV
Sbjct: 121 -VIRKLDYLKDLGITAIEIMPIAQF----PGKRDWGYDGVYLYAVQNSYGGPEGFRKLVD 175
Query: 653 LVHSKG 658
H KG
Sbjct: 176 EAHKKG 181
Score = 31.9 bits (73), Expect = 1.2
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 30/169 (17%)
Query: 873 RIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLK 932
RI + L LL P + F G+E G E+P + D D + ++
Sbjct: 387 RIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSK--------LIQ 438
Query: 933 VCRDGSRVPFQW--NDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTL 990
R+G + + Q+ + F+ +K + W ++ +S YK L +
Sbjct: 439 GVREGRKKENGQDTDPQDESTFNASK------LS-WKIDE--------EIFSFYKILIKM 483
Query: 991 RATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039
R + N++ I + + + + V S
Sbjct: 484 RKELSIACDRRVNVVNGENWLII-----KGREYFSLYVFSKSSIEVKYS 527
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 35.9 bits (83), Expect = 0.081
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT-LGLGIIEKIDYLKELGVETLW 615
+ + IY++ + F + D RG + +E + L + G+ +
Sbjct: 250 FSDITIYELHIRDFSAHDGTVDSDSRGG-----FRAFAYQASAGMEHLRKLSDAGLTHVH 304
Query: 616 LTPFY 620
L P +
Sbjct: 305 LLPSF 309
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 35.0 bits (81), Expect = 0.16
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIG-DLRGKNVRKRYLELT-----LGLGIIEKIDYLKELG 610
+ VIY+ + F S ++ G +GK YL LT G + Y+KELG
Sbjct: 212 PVDAVIYETHLRDF--SIHENSGMINKGK-----YLALTETDTQTANGSSSGLAYVKELG 264
Query: 611 VETLWLTPFY 620
V + L P
Sbjct: 265 VTHVELLPVN 274
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 34.6 bits (80), Expect = 0.19
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 35/130 (26%)
Query: 540 STASSV--LSSVRCNQKEW----WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLEL 593
+ S V S W W+ V+Y++ +F G R
Sbjct: 111 NGPSYVVDPGSYTWRNTGWKGSRWEQAVVYEMHTGTFTPE-----GTFRA---------- 155
Query: 594 TLGLGIIEKIDYLKELG---VETLWLTPFYSGPNGDI--GYDISNHTEVGKDFGTMEDFD 648
I K+ YL ELG +E + + F G+ GYD +GT +DF
Sbjct: 156 -----AIAKLPYLAELGVTVIEVMPVAQF----GGERGWGYDGVLLYAPHSAYGTPDDFK 206
Query: 649 ELVKLVHSKG 658
+ H G
Sbjct: 207 AFIDAAHGYG 216
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 34.4 bits (78), Expect = 0.21
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNH------TEVGKDFGTMEDFDELVKLV 654
E YL G + ++P ++ G +F ++V
Sbjct: 27 ECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRC 86
Query: 655 HSKG 658
++ G
Sbjct: 87 NNVG 90
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP:
f.1.1.1
Length = 204
Score = 32.8 bits (74), Expect = 0.35
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 827 SVNYEIMNK--------FGATSNAKDLENVVNAYLKSLPSGKWS-------SWMVGGHSI 871
V+ + M F +E V ++ +G W SW++ G +
Sbjct: 88 HVDAQDMANKLGNLSKAFKVADVVMKVEKVREKSIEGYETGNWGPLMLEVESWVLSGIAS 147
Query: 872 TRIATRYSPDLVDAMNMLTLLLPGTAVTFAG 902
+ +S L+L +P AV AG
Sbjct: 148 SVALGIFS--ATLGAYALSLGVPAIAVGIAG 176
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 33.1 bits (76), Expect = 0.61
Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 25/184 (13%)
Query: 879 SPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGS 938
+ L L LP T + F G E +P + D G + +G
Sbjct: 418 TLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELG---------QAVSEGR 468
Query: 939 RVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQA----EKKTKPSHYSV---YKDLTTLR 991
+ +E GFS P + ++ H Y+DL LR
Sbjct: 469 K-------KEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHARTLRLYRDLLRLR 521
Query: 992 ATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVA 1049
+ + + + V + G+ L+ NL T V
Sbjct: 522 REDPVLHNRQRENLTTGHDGDVLWVRTVTGAGERVLLWNLGQDTRAVAEVKLPFTVPRRL 581
Query: 1050 IFTS 1053
+ +
Sbjct: 582 LLHT 585
Score = 31.5 bits (72), Expect = 1.5
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 35/129 (27%)
Query: 541 TASSV--LSSVRCNQKEW----WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT 594
+ V + +W + V Y++ V +F E T
Sbjct: 102 GEAEVVDFGTFDWTDADWHGIKLADCVFYEVHVGTFTP-------------------EGT 142
Query: 595 LGLGIIEKIDYLKELG---VETLWLTPFYSGPNGDI--GYDISNHTEVGKDFGTMEDFDE 649
EK+ YLKELG ++ + L F +G GYD + +G ED
Sbjct: 143 YR-AAAEKLPYLKELGVTAIQVMPLAAF----DGQRGWGYDGAAFYAPYAPYGRPEDLMA 197
Query: 650 LVKLVHSKG 658
LV H G
Sbjct: 198 LVDAAHRLG 206
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP:
b.18.1.3 b.77.2.1 f.1.3.1
Length = 584
Score = 32.5 bits (73), Expect = 0.93
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 747 QKIDPYTNY--YVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFP 795
+ YT++ + GL+ G+ +W + N RE+ + D++ FP
Sbjct: 174 KLTQEYTDHCVKWYNVGLDKLRGSSYESWVNFNRYRREMTLTVLDLIALFP 224
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 32.1 bits (73), Expect = 1.1
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL-----GLGIIEKIDYLKELGV 611
+ VIY+ V F N G+ +GK YL T + ID LKELG+
Sbjct: 430 PVDEVIYEAHVRDFSIDANSGM-KNKGK-----YLAFTEHGTKGPDHVKTGIDSLKELGI 483
Query: 612 ETLWLTPFY 620
T+ L P
Sbjct: 484 TTVQLQPVE 492
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 32.1 bits (72), Expect = 1.2
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 747 QKIDPYTNY--YVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFP 795
+ I YT+Y + GL G +W N RE+ + D+V F
Sbjct: 170 RLIGNYTDYAVRWYNTGLERVWGPDSRDWVRYNQFRRELTLTVLDIVALFS 220
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 31.2 bits (70), Expect = 2.1
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 599 IIEKIDYLKELGVETLWLTPFYSGPNG--------DIGYDISNHTEVGKD----FGTMED 646
I + D G+ + + P Y D GY ++ ++G + +GT D
Sbjct: 855 IAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTKYGTDGD 914
Query: 647 FDELVKLVHSKG 658
++ +H
Sbjct: 915 LRATIQALHHAN 926
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 31.0 bits (69), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 747 QKIDPYTNY--YVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFP 795
+ YT++ + GLNG G+ + W N RE+ + D++ FP
Sbjct: 172 KLTQQYTDHCVNWYNVGLNGLRGSTYDAWVKFNRFRREMTLTVLDLIVLFP 222
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Length = 184
Score = 29.6 bits (66), Expect = 3.8
Identities = 8/84 (9%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFI 1013
+ + + + T + KP ++ + A +++ + + + +
Sbjct: 60 QVTNSMTRGKHCSTWSYTLIPTNKPGQFTRDNRGSGPGADKENIQVIE---TDYVKFALV 116
Query: 1014 LTRTEGSTSVYLIINLNSRTETVD 1037
L+ + S ++L R +
Sbjct: 117 LSLRQASNQNITRVSLLGRDWKIT 140
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane
interactions, toxin structure, voltage-gated channel,
membrane protein; 2.50A {Escherichia coli}
Length = 191
Score = 29.7 bits (66), Expect = 4.3
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 827 SVNYEIMNK--------FGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT--RIAT 876
SV Y+ K T + +VV+ LK +G W + +
Sbjct: 87 SVKYDDWAKHLDQFAKYLKITGHVSFGYDVVSDILKIKDTGDWKPLFLTLEKKAADAGVS 146
Query: 877 RYSPDLVDAMNMLTLLLPGTAVTFA 901
L + TL + G A+
Sbjct: 147 YVVALLFSLLAGTTLGIWGIAIVTG 171
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 30.0 bits (67), Expect = 4.3
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 488 VMNERRLST-----IASRTMAAMSLGFIVMVTPWTIQEVVAACTGSKM--NWVALLVLLS 540
V L + S A +++G + + P+ I C +++L+
Sbjct: 56 VWLNSNLQNVTNYFVVSLAAADIAVGVLAI--PFAITISTGFCAACHGCLFIACFVLVLT 113
Query: 541 TAS 543
+S
Sbjct: 114 QSS 116
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A
{Escherichia coli K12} SCOP: f.1.1.1
Length = 321
Score = 29.9 bits (66), Expect = 4.3
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 827 SVNYEIMNK--------FGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT--RIAT 876
VN + M F A +E + ++ +G W ++ S +
Sbjct: 206 QVNAKDMANKIGNLGKAFKVADLAIKVEKIREKSIEGYNTGNWGPLLLEVESWIIGGVVA 265
Query: 877 RYSPDLVDAMNMLTLL--LPGTAVTFAG 902
+ L A+ + L TA+ G
Sbjct: 266 GVAISLFGAVLSFLPISGLAVTALGVIG 293
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 29.8 bits (66), Expect = 4.5
Identities = 19/149 (12%), Positives = 32/149 (21%), Gaps = 12/149 (8%)
Query: 98 KTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPT 157
K+ +R+ V+ + P R N K I L ++
Sbjct: 20 KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIP-----LESCFNINKRAD 74
Query: 158 VDIESLFSTKPPSHSMCLT--DSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPH 215
+ L + + Q L Q G +
Sbjct: 75 SKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA-----KGHHDGAAALGAGGG 129
Query: 216 LPHVCCPSGLPSTSRPDIEGEGPSSEKYW 244
SGL G+ P +
Sbjct: 130 GGSCSGSSGLGEAGEDLSYGDVPPGPAFK 158
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 28.7 bits (64), Expect = 5.1
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 94 TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVL 153
K W +R+ V+ Q+S+ F M ++ + + L L +
Sbjct: 19 KNVWKRWKKRFFVLV--QVSQY-------------TFAMCSYREKKAEPQELLQLDGYTV 63
Query: 154 GV--PTVDIES---LFSTKPPSHSMCL-TDSKHQCQ 183
P +E F+ ++ +D +
Sbjct: 64 DYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRI 99
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 30.0 bits (67), Expect = 5.2
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT-LGLGIIEKIDYLKELGVETLW 615
I++ + + +LRGK YL LT +++ + L GV +
Sbjct: 421 LAKMTIHESHIRDLSAWDQTVPAELRGK-----YLALTAQESNMVQHLKQLSASGVTHIE 475
Query: 616 LTPFY 620
L P +
Sbjct: 476 LLPVF 480
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 29.7 bits (66), Expect = 6.6
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 488 VMNERRLST-----IASRTMAAMSLGFIVMVTPWTIQEVVAACTGSKM--NWVALLVLLS 540
V L + S A +++G + + P+ I C +++L+
Sbjct: 46 VWLNSNLQNVTNYFVVSLAAADIAVGVLAI--PFAITISTGFCAACHGCLFIACFVLVLT 103
Query: 541 TAS 543
+S
Sbjct: 104 QSS 106
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 29.4 bits (65), Expect = 7.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 747 QKIDPYTNY--YVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFP 795
I Y+++ ++ GL+ G+ W N RE+ S D++ FP
Sbjct: 173 SLIAQYSDHCVQWYRTGLDRLKGSNAKQWVEYNRFRREMTLSVLDIMTLFP 223
>3d2o_A UPF0343 protein NGO0387; bimodular tunnel fold, tunneling fold,
folate biosynthesis, GTP cyclohydrolase, metalloenzyme,
manganese; 2.04A {Neisseria gonorrhoeae} PDB: 3d1t_A
Length = 257
Score = 28.7 bits (64), Expect = 9.9
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 820 DTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATR 877
+ +GTH+S +M + + L + + L S + + A
Sbjct: 54 EQKGTHMSRFVALMEQHTEVLDFAQLHRLTAEMVALLDSRAGKISVSFPFFRKKTAPV 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.414
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,451,689
Number of extensions: 986635
Number of successful extensions: 2521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2349
Number of HSP's successfully gapped: 242
Length of query: 1065
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 962
Effective length of database: 3,825,930
Effective search space: 3680544660
Effective search space used: 3680544660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.1 bits)