BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15057
(151 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 117/149 (78%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
DSLR + +LNIL+RSDGS + +QG+T V AS+ GPVE K+Q ++K+ VE+ FRP+SG
Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHFRPRSG 67
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ V DRL E++I++T ESALLT LHPRT+V + IQE+QD+G L++C INA CLALI+SG
Sbjct: 68 MGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVACAINAVCLALIDSG 127
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
I M+Y++AAV +++++ + LD +++++
Sbjct: 128 IEMKYLVAAVHSVLDEEGGITLDPDELRA 156
>gi|405978848|gb|EKC43209.1| Exosome complex exonuclease RRP46 [Crassostrea gigas]
Length = 215
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 112/146 (76%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+L S L LSR DG SQG T V +++YGP E K+ K ++DKA+++V+++PKSGL
Sbjct: 8 LRQLSSTLGDLSRPDGDATVSQGDTCVTSAVYGPGEVKVTKELLDKATIDVVYKPKSGLP 67
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++L E I+++CE+ +L LHPR+S+ +T+QE+Q++GSLLSCCIN+ C+AL++SG+S
Sbjct: 68 GCAEKLLERTIRNSCETVILGNLHPRSSISITVQEIQNRGSLLSCCINSTCMALLDSGVS 127
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
MRY++AAVSC IND +I+D N +Q
Sbjct: 128 MRYLMAAVSCAINDNGSIIMDPNTLQ 153
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| AAEL006819-PA [Aedes aegypti]
Length = 217
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 117/149 (78%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+SLR + +LN+L+RSDGS + +QG+T VVAS+ GP+E K+Q ++K+ +++ F+P+SG
Sbjct: 8 NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYFKPRSG 67
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ V DRL ES+IK+T ESA+LT LHPRT++ + +QE+QDQG L++C INA CLAL+NSG
Sbjct: 68 MGSVNDRLLESLIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVACAINAVCLALMNSG 127
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
I M++++AAV ++ + +++LD + +QS
Sbjct: 128 IEMKFLVAAVHSVLREDGDIVLDPDALQS 156
>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
morsitans morsitans]
Length = 245
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 112/147 (76%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L +LN L+R+DGS +F QG T V+ASM GPVE K+Q IDKA V+ I+RPK+GL
Sbjct: 20 LRTLNCELNPLTRTDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKAHVDCIYRPKAGLP 79
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++D+++E++IK TCE+ALL+ LHPRT + + +QEL D+G L +C INAAC+AL+ G+
Sbjct: 80 TIRDKIRETMIKDTCEAALLSALHPRTLISIQLQELDDRGGLDACAINAACMALLIGGVP 139
Query: 124 MRYILAAVSCIINDKNEVILDANQIQS 150
M++ +AAV C+++ E++LD +Q+Q+
Sbjct: 140 MKFTVAAVHCVVDKNGEIVLDPDQLQA 166
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 116/143 (81%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+S+R LK + ++LSR+DGSV+FSQG TVV+AS+YGP+EAKIQK + D+ +E+ ++PK+G
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKTG 65
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ V +R KE +IK+TC +LT LHPRT+V +T+QE+QD G+LL+ INA CLAL++SG
Sbjct: 66 MPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAASINAVCLALLDSG 125
Query: 122 ISMRYILAAVSCIINDKNEVILD 144
+ ++ ++AAV+C+++ K+ +ILD
Sbjct: 126 LPLQCLVAAVTCLVDKKDRIILD 148
>gi|357620682|gb|EHJ72793.1| exosome complex exonuclease RRP46 [Danaus plexippus]
Length = 205
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 109/146 (74%), Gaps = 2/146 (1%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+K +LN LSRSDGS I SQG+TVV S+ GP++ K I+KA++E++F K G V
Sbjct: 1 MKCELNFLSRSDGSAILSQGETVVTVSVNGPLDIKTTSQSIEKATLEILFSSKGGKPSVA 60
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
DR KE+VI+ TCE+A+L L+PRT + +TIQEL+D G LLSC IN ACLAL+NSGIS+ +
Sbjct: 61 DRFKENVIRQTCETAILGCLYPRTGITITIQELEDYGGLLSCAINCACLALLNSGISLHH 120
Query: 127 ILAAVSCIINDKNEVILDAN--QIQS 150
++AAVSCI+++ ++L+ + Q+QS
Sbjct: 121 VVAAVSCIVDETGNIVLEPSYQQVQS 146
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + +LN LS DGS + QG T VVA +YGP+EAK QK I DKASVEV + P G +
Sbjct: 12 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V DR+ E IK TCE+A++ HP T++ + IQEL+D G +L+C INAACLALIN+GI
Sbjct: 72 KVDDRMTEMYIKETCEAAIIVTFHPATAICINIQELEDSGGILACTINAACLALINAGIP 131
Query: 124 MRYILAAVSCIINDKNE-VILDANQIQ 149
M++ +AAV+C+I + E ++LD + Q
Sbjct: 132 MKFTIAAVNCMIQEGTENIVLDPDTTQ 158
>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
Length = 220
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + ++N+LSRSDGS +F QG T ++A + GP+EAK QK D+ S+EV + P G +
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTYTPLKGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V DRL E+ IK TCESA+L HP T V + +QE+QD G LL+C INA+CLALINSG+S
Sbjct: 72 KVDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAINASCLALINSGLS 131
Query: 124 MRYILAAVSCII-NDKNEVILDANQIQ 149
MR+ +AA+SC+I + ++I+D + Q
Sbjct: 132 MRFTVAAISCMIEKETGDIIMDPDSSQ 158
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + +LN LS DGS + QG T VVA +YGP+EAK QK I DKASVEV + P G +
Sbjct: 12 LRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V DR+ E IK TCE+A++ HP T++ + +QEL+D G +L+C INAACLALIN+GI
Sbjct: 72 KVDDRMTEMYIKETCEAAIIVTFHPATAICINVQELEDSGGILACTINAACLALINAGIP 131
Query: 124 MRYILAAVSCIINDKNE-VILDANQIQ 149
M++ +AAV+C+I + E +I+D + Q
Sbjct: 132 MKFTIAAVNCMIQEGTENIIVDPDTTQ 158
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + +LN LS DGS + QG T VVA +YGP+EAK QK I DKAS+EV + P G +
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASIEVSYIPVKGPA 74
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ DR+ E IK TCE+A++ HP T++ + IQE++D G +L+C INAACLALIN+GI
Sbjct: 75 KIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLALINAGIP 134
Query: 124 MRYILAAVSCIIND-KNEVILDANQIQ 149
M++ +AAV+C+I + N +ILD + Q
Sbjct: 135 MKFTIAAVNCMIQEGTNNIILDPDSTQ 161
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + +LN LS DGS + QG T VA +YGP+EAK+QK I DKAS+EV + P G +
Sbjct: 21 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSYIPVKGPA 80
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ DR+ E IK TCE+A++ HP T++ + IQE++D G +L+C INAACLALIN+GI
Sbjct: 81 KIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLALINAGIP 140
Query: 124 MRYILAAVSCIIND-KNEVILDANQIQ 149
M++ +AAV+C+I + N +ILD + Q
Sbjct: 141 MKFTIAAVNCMIQEGTNNIILDPDSTQ 167
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + ++N+LSRSDGS +F QG T +VA + GP+E K QK DK S+EV + P +G +
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTYTPLTGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V DRL E+ I+ +CESA+L LHP T + + +QE+QD G LL+C INA+CLALINSG+S
Sbjct: 72 KVDDRLIETYIRESCESAILVSLHPNTMICINLQEVQDSGGLLACAINASCLALINSGLS 131
Query: 124 MRYILAAVSCII-NDKNEVILDANQIQ 149
M++ +AAVSC+I + ++I+D + Q
Sbjct: 132 MKFTIAAVSCMIEKETGKIIMDPDNTQ 158
>gi|345489938|ref|XP_003426267.1| PREDICTED: exosome complex component RRP46-like [Nasonia
vitripennis]
Length = 216
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 104/150 (69%), Gaps = 3/150 (2%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR L +LN LS DGS +F QG T V+A +YGPVEAK+QK +KA+VE F P G
Sbjct: 7 SLRPLNCELNYLSVPDGSTMFMQGDTSVLAGVYGPVEAKLQKMFHNKATVEATFGPIKGP 66
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ DR E ++ TCE A+LT LHP +V + IQELQD G LL+C INAACLALINS I
Sbjct: 67 PSIDDRFVELYVRDTCEGAILTSLHPAATVSINIQELQDCGGLLACSINAACLALINSSI 126
Query: 123 SMRYILAAVSCIINDKN--EVILDANQIQS 150
+M++ AAV C+I DKN ++++D + IQ+
Sbjct: 127 AMKFTFAAVCCMI-DKNSGDIVIDPSLIQT 155
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + ++N LS DGS + QG T V+A +YGPVEAK QK I DKA VEV + P G +
Sbjct: 12 LRPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKMIYDKAFVEVSYTPIKGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V DR+ E IK TCE+A++ HP T++ + IQEL+D G LL+C INAACLALIN+ I
Sbjct: 72 KVDDRMTEMYIKETCETAIIVTFHPATAICINIQELEDSGGLLACIINAACLALINAAIP 131
Query: 124 MRYILAAVSCIINDKNE-VILDANQIQ 149
M++ +AAVSC+I + + +ILD + Q
Sbjct: 132 MKFTIAAVSCMIEESTDNIILDPDNTQ 158
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 108/149 (72%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LRE++ + N LSR DGSV++SQG TVV+A++ GPVE K Q ID + +E +RPK+G
Sbjct: 14 DKLREMRCEFNPLSRCDGSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGSYLECNYRPKAG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++ESVI+ E A+L +PR+ + + IQEL+D+GS+ +C +NAACLA+I G
Sbjct: 74 LPQVKERIRESVIQDVLELAVLGESYPRSKMSVQIQELEDRGSIDACAVNAACLAMIIGG 133
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ M+Y AAV CIIN+ E ILD +Q ++
Sbjct: 134 LPMKYSFAAVQCIINEDGEYILDPDQRET 162
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C +N ++LD Q
Sbjct: 147 PMRALFCGVTCALNSDGTLVLDPTAKQ 173
>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
Length = 211
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 106/143 (74%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M LR + S L +L+R DG+V F+QG T ++A++YGP E KI + I+D+A+VEVI++PKS
Sbjct: 1 MTDLRPMTSDLGVLTRPDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIYKPKS 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
GL +RL E I++T E+ +L LHPR+ + +T+QELQD GSLL+C +NAACLAL+++
Sbjct: 61 GLPGCSERLHERYIRNTVETVILASLHPRSCISVTVQELQDSGSLLACSVNAACLALLDA 120
Query: 121 GISMRYILAAVSCIINDKNEVIL 143
++M+Y++A V II+ + +L
Sbjct: 121 CVNMKYLIAGVYVIIDREGNTVL 143
>gi|73947485|ref|XP_852838.1| PREDICTED: exosome complex component RRP46 [Canis lupus familiaris]
Length = 235
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C +N ++LD Q
Sbjct: 147 PMRALFCGVTCALNSDGTLVLDPTAKQ 173
>gi|403305478|ref|XP_003943292.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP46,
partial [Saimiri boliviensis boliviensis]
Length = 238
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 102/147 (69%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 60 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 119
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+A+L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 120 PGVAEKSRERLIRNTCEAAVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACIALVDAGV 179
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 180 PMRALFCGVTCALDSDGSLVLDPTSKQ 206
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 31 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 90
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 91 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 150
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C +N ++LD Q
Sbjct: 151 PMRALFCGVTCALNSDGTLVLDPTAKQ 177
>gi|426242933|ref|XP_004015323.1| PREDICTED: exosome complex component RRP46 [Ovis aries]
Length = 235
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 102/147 (69%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E KI K I +KA++EVI RPK+GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLMLDPTAKQ 173
>gi|355686801|gb|AER98191.1| exosome component 5 [Mustela putorius furo]
Length = 236
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 29 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 88
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 89 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 148
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C +N ++LD Q
Sbjct: 149 PMRALFCGVTCALNADGTLVLDPTAKQ 175
>gi|395859609|ref|XP_003802126.1| PREDICTED: exosome complex component RRP46 [Otolemur garnettii]
Length = 235
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFMQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLVLDPTAKQ 173
>gi|410982976|ref|XP_003997820.1| PREDICTED: exosome complex component RRP46 [Felis catus]
Length = 235
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 102/147 (69%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ + ++LD Q
Sbjct: 147 PMRALFCGVTCALDSEGTLVLDPTAKQ 173
>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
Length = 220
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + ++N+LSRSDGS +F QG T ++ + GP+E + QK D+AS+EV + P G +
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTYTPLKGPA 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ DRL E+ IK TCESA+L HP T V + +QE+QD G LL+C INA+CLALINSG+S
Sbjct: 72 KIDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAINASCLALINSGLS 131
Query: 124 MRYILAAVSCII-NDKNEVILDANQIQ 149
+++ +AAVSC+I + +VI+D + Q
Sbjct: 132 LKFTIAAVSCMIEKETGQVIIDPDSSQ 158
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 60 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 119
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 120 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 179
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 180 PMRALFCGVACALDSDGTLVLDPTSKQ 206
>gi|344298319|ref|XP_003420841.1| PREDICTED: exosome complex component RRP46-like [Loxodonta
africana]
Length = 235
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 101/142 (71%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E KI K I +KA++EV+ RPK+GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVLLRPKTGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILD 144
MR + V+C ++ ++LD
Sbjct: 147 PMRALFCGVTCALDADGNLVLD 168
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 25 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 84
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 85 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGV 144
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 145 PMRALFCGVTCALDPDGNLVLDPTTKQ 171
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 69 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 128
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 129 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 188
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 189 PMRALFCGVTCALDSDGTLVLDPTSKQ 215
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
gi|397482601|ref|XP_003812509.1| PREDICTED: exosome complex component RRP46 [Pan paniscus]
gi|410210198|gb|JAA02318.1| exosome component 5 [Pan troglodytes]
gi|410248686|gb|JAA12310.1| exosome component 5 [Pan troglodytes]
gi|410287660|gb|JAA22430.1| exosome component 5 [Pan troglodytes]
Length = 235
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLVLDPTSKQ 173
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDPDGNLVLDPTTKQ 173
>gi|402905661|ref|XP_003915633.1| PREDICTED: exosome complex component RRP46 [Papio anubis]
Length = 260
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 52 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 111
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 112 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 171
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 172 PMRALFCGVTCALDSDGTLVLDPTSKQ 198
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 29 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 88
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 89 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 148
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 149 PMRALFCGVACALDSDGTLVLDPTSKQ 175
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVACALDSDGTLVLDPTSKQ 173
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVACALDSDGTLVLDPTSKQ 173
>gi|380814818|gb|AFE79283.1| exosome complex component RRP46 [Macaca mulatta]
gi|383414573|gb|AFH30500.1| exosome complex component RRP46 [Macaca mulatta]
Length = 235
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLVLDPTSKQ 173
>gi|149722162|ref|XP_001500390.1| PREDICTED: exosome complex component RRP46-like [Equus caballus]
Length = 235
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLMLDPTAKQ 173
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E ++++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGNLVLDPTTKQ 173
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E ++++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGNLVLDPTTKQ 173
>gi|426388821|ref|XP_004060830.1| PREDICTED: exosome complex component RRP46 [Gorilla gorilla
gorilla]
Length = 235
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + ++C ++ ++LD Q
Sbjct: 147 PMRALFCGITCALDSDGTLVLDPTSKQ 173
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 108/146 (73%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + + N+LSR DGS QG T V+A++YGP E K+ + IIDKA+++VIF+PK GL
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKIGLP 70
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++L+E ++++TCES +L +LHPR+ V + +Q +QD GSLLSCCINAAC+AL++S +
Sbjct: 71 GCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLSCCINAACMALVDSAVP 130
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+ +++AV+C + ++ ++LD + Q
Sbjct: 131 MKCLVSAVTCAVMEEGRIVLDPDSKQ 156
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E ++++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGNLVLDPTTKQ 173
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLVLDPTAKQ 173
>gi|431911571|gb|ELK13728.1| Exosome complex exonuclease RRP46 [Pteropus alecto]
Length = 231
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T ++A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 23 SLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 82
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 83 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 142
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 143 PMRALFCGVTCALDSDGTLVLDPTAKQ 169
>gi|348552426|ref|XP_003462029.1| PREDICTED: exosome complex component RRP46-like [Cavia porcellus]
Length = 240
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 100/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 32 SLRHFACEQNLLSRPDGSATFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 91
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+N AC+AL+++GI
Sbjct: 92 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNVACMALVDAGI 151
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 152 PMRALFCGVTCALDSDGTLVLDPTAKQ 178
>gi|347582673|ref|NP_001231590.1| exosome component 5 [Sus scrofa]
Length = 235
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR + N+LSR DGS F QG T V+A +YGP E K++K I +KA++EVI RPK GL
Sbjct: 27 TLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVRKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ +LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTFMLDPTAKQ 173
>gi|391224436|ref|NP_001038817.2| exosome complex exonuclease RRP46 [Danio rerio]
Length = 230
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 103/146 (70%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE S+ ++LSR DGS F QG T ++A +YGP E K+ K I D+A+VEV+ +PK GL
Sbjct: 22 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 81
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V++R +E ++ TCE+ALL LHPR+S+ + +Q + D GSLLSCC+NAAC+AL+++G+
Sbjct: 82 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 141
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M + +V+C I+ + ++I D Q
Sbjct: 142 MSRLFCSVTCAISKEGQIITDPTARQ 167
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 103/146 (70%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE S+ ++LSR DGS F QG T ++A +YGP E K+ K I D+A+VEV+ +PK GL
Sbjct: 10 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 69
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V++R +E ++ TCE+ALL LHPR+S+ + +Q + D GSLLSCC+NAAC+AL+++G+
Sbjct: 70 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 129
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M + +V+C I+ + ++I D Q
Sbjct: 130 MSRLFCSVTCAISKEGQIITDPTARQ 155
>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
pisum]
Length = 211
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 105/145 (72%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
LK QL L ++GS SQG++ V S+ GP E K K + D+A+V+V FR K+G V
Sbjct: 6 LKCQLGFLGNTEGSAYLSQGKSTVSVSVVGPFEPKASKCMYDRATVDVTFRRKTGSITVH 65
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
D++ E +++STCE AL+ +PRT++++T+QE+QD+G+LLS C+NA+C+ L+NSGI+M +
Sbjct: 66 DKMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLSTCLNASCMGLMNSGIAMHH 125
Query: 127 ILAAVSCIINDKNEVILDANQIQSN 151
+ AAVSC + +K E+IL+ ++ Q N
Sbjct: 126 LYAAVSCAVTEKEEIILNPDETQIN 150
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 100/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVACALDSDGTLVLDPTSKQ 173
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 101/146 (69%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE + ++LSR DGS F QG T V+A +YGP E K+ + I +KA++EVI RPK+GL
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 76
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+Q++ E +I+ TCES ++ LHPRTS+ + +Q + D GSLLSCC+NAAC+ L+++G+
Sbjct: 77 AIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCLNAACMGLMDAGLP 136
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C +++ + LD N Q
Sbjct: 137 MRSLFCGVTCALDNDGNITLDPNDRQ 162
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 104/146 (71%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+L ++ + LSR DGS I +QG+TVV A +YGP E K + + +KA+VEV FR KSG
Sbjct: 9 LRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPAEVKQARELHEKATVEVFFRSKSGHQ 68
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
DRL E V++ST E+A+LT LHPR+ + LT QEL + G LL+CCINA+CLA+I++ +S
Sbjct: 69 SCSDRLTEKVVRSTLETAMLTALHPRSCISLTCQELHNDGGLLACCINASCLAVIDAAVS 128
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+ +AAV+ + + V+LD ++ Q
Sbjct: 129 MKCHIAAVTAALTQEGTVVLDPSRQQ 154
>gi|348543409|ref|XP_003459176.1| PREDICTED: exosome complex component RRP46-like [Oreochromis
niloticus]
Length = 219
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLRE + ++LSR DGS F QG T V+A +YGP E K+ K I D+A++EV+ +PK GL
Sbjct: 10 SLREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGL 69
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V++R +E ++ TCE++LL LHPR+S+ L +Q L D GSLLSCC+NAAC+AL+++G+
Sbjct: 70 PSVRERSQEQCVRETCEASLLLTLHPRSSLTLILQVLHDDGSLLSCCLNAACMALMDAGL 129
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
M + V+C I+ ++I D Q
Sbjct: 130 PMSCLFCGVTCAISTDGQIITDPTAAQ 156
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 101/143 (70%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE + ++LSR DGS F QG T V+A +YGP E K+ + I +KA++EVI RPK+GL
Sbjct: 19 LREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 78
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+Q++ +E +I+ TCES ++ LHPRTS+ + +Q + D GSLLSCC+NAAC+ L+++G+
Sbjct: 79 AIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMGLMDAGLP 138
Query: 124 MRYILAAVSCIINDKNEVILDAN 146
MR + V+C +++ + LD N
Sbjct: 139 MRALFCGVTCAMDNDGTITLDPN 161
>gi|444518498|gb|ELV12200.1| Exosome complex component RRP46 [Tupaia chinensis]
Length = 235
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 100/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NA C+AL+++G+
Sbjct: 87 PGVAEKTRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNATCMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
M+ + V+C ++ ++LD Q
Sbjct: 147 PMQALFCGVTCTLDSDGALVLDPTAKQ 173
>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
Length = 235
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 105/143 (73%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LRE++ + N LSRSDGSV++SQG TVV+A++ GP+E K Q I+ + +E +RPK+G
Sbjct: 12 DKLREMQCKFNPLSRSDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++E+ I+ E ALL+ +PR+ + L +QEL+D+GS +C +N+ACLAL+ G
Sbjct: 72 LPQVKERIREAAIRDVLELALLSEAYPRSKMSLQVQELEDRGSTDACALNSACLALLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILD 144
+ ++Y AAV CIIN++ E +LD
Sbjct: 132 LPLKYSFAAVHCIINEQGEFVLD 154
>gi|417397593|gb|JAA45830.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 235
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 102/147 (69%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T ++A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L +LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGVLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
M+ + V+C ++ ++LD Q
Sbjct: 147 PMQALFCGVTCALDADGTLMLDPTAKQ 173
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex component RRP46 isoform 1 [Nomascus
leucogenys]
gi|441654056|ref|XP_004091049.1| PREDICTED: exosome complex component RRP46 isoform 2 [Nomascus
leucogenys]
Length = 235
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 100/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK L
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIRL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGTLVLDPTSKQ 173
>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
Length = 226
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 104/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V+DR++E+ I+ E ALL HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 66 LPQVKDRIREAAIRDVLELALLAEAHPRSKMSVQIQELEDRGSIDACALNCACLAMLIGG 125
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ M+Y AAV CIIN++ E +LD +Q ++
Sbjct: 126 LPMKYSFAAVHCIINEQGEYVLDPDQSET 154
>gi|350538705|ref|NP_001232110.1| putative exosome component 5 [Taeniopygia guttata]
gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 99/148 (66%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR +L +LSR DGS F QG T V+A +YGP EAKI K + D+A+++V+ RPK GL
Sbjct: 17 LRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLP 76
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V +R +E +++ TCE+ +L +LHPRT++ L +Q L D GSLLSCC+NAAC+AL+++G+
Sbjct: 77 GVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLP 136
Query: 124 MRYILAAVSCIINDKNEVILDANQIQSN 151
+ + V+C + ++LD Q
Sbjct: 137 LSALFCGVTCALQPDGAILLDPTARQEQ 164
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 104/141 (73%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + + +L ++DGS F+QG T V+A+ YGPVE K+ K +ID+A++EVIFRPK G+
Sbjct: 15 LRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGIP 74
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++L E +I+++CE +LT LHPR S+ + +Q +Q+ GSLLSC +NAACLA++++G
Sbjct: 75 GCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVNAACLAMMDAGFP 134
Query: 124 MRYILAAVSCIINDKNEVILD 144
MR ++ ++C I +++E++LD
Sbjct: 135 MRCMMCGITCAITEQDELVLD 155
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|296477725|tpg|DAA19840.1| TPA: exosome component 5-like [Bos taurus]
Length = 242
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 7/154 (4%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E KI K I +KA++EVI RPK+GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-------LLSCCINAACL 115
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GS LL+CC+NAAC+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSKLNHCLWLLACCLNAACM 146
Query: 116 ALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AL+++G+ MR + V+C ++ ++LD Q
Sbjct: 147 ALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQ 180
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 100/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+ +YGP E K+ K I +KA++EVI +PK GL
Sbjct: 29 SLRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKIGL 88
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAACLAL+++G+
Sbjct: 89 PGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACCLNAACLALVDAGV 148
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
+R + V+C ++ ++LD Q
Sbjct: 149 PLRALFCGVTCALDLDGGLVLDPTAKQ 175
>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
Length = 234
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 107/149 (71%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LRE++ + N LSR DGSV++ QG TVV++++ GP+E K Q ID + +E +RPK+G
Sbjct: 13 DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLECNYRPKAG 72
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++E+ ++ E ALL+ +PR+ + L IQEL+D+GS+ +C +N+ACLA++ G
Sbjct: 73 LPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSACLAMLIGG 132
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++ AAV CIIN++ E ILD +Q ++
Sbjct: 133 LPLKCSFAAVHCIINEQGEYILDPDQRET 161
>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
Length = 233
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 103/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V DR++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++Y AAV IIN++ E +LD +Q ++
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSET 160
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 102/146 (69%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + N+LSR DGS + QG T V+ ++YGP E K K +DKA++EVIF+PK G+
Sbjct: 13 LRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPKVGIP 72
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ +E +I++TCE+ +LT LHPR+S+ + IQ + + GSLLSCC+N+ C+AL+++G+
Sbjct: 73 GCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVMHNAGSLLSCCVNSTCMALLDAGLP 132
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M ++AAV+C ++ ++ILD Q
Sbjct: 133 MSCLVAAVTCSLSCDGDIILDPTSQQ 158
>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
Length = 233
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 103/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V DR++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++Y AAV IIN++ E +LD +Q ++
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSET 160
>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
Length = 234
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 107/149 (71%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LRE++ + N LSR DGSV++ QG TVV++++ GPVE K Q ID + +E +RPK+G
Sbjct: 13 DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLECNYRPKAG 72
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++E+ ++ E ALL+ +PR+ + L IQEL+D+GS+ +C +N+ACLA++ G
Sbjct: 73 LPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSACLAMLIGG 132
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++ AAV CIIN++ + ILD +Q ++
Sbjct: 133 LPLKCSFAAVHCIINEEGDYILDPDQRET 161
>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
Length = 223
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 104/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D+LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 6 DTLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V DR++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 66 LPQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 125
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++Y AAV IIN++ E +LD +Q ++
Sbjct: 126 LPLKYSFAAVHAIINEQGEYVLDPDQSET 154
>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
Length = 227
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 104/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 66 LPQVKERIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 125
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++ AAV CIIN++ E +LD +Q ++
Sbjct: 126 LPLKCSFAAVHCIINEQGEYVLDPDQSET 154
>gi|443689973|gb|ELT92240.1| hypothetical protein CAPTEDRAFT_152902 [Capitella teleta]
Length = 218
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 105/146 (71%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR++ +L+ LS+ DGS + QG + +A++YGP + +I K ++D+A+++++++PK+GL
Sbjct: 12 LRKMLGELSRLSQPDGSAMLCQGTSTSLAAVYGPRDVRISKELVDRATMDIVYKPKTGLP 71
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
R E +I+STCE+ +L HPRTS+ + +QE+QD GS LSCC+NA LAL+++ +
Sbjct: 72 GNDARFLERIIRSTCENMILVKQHPRTSIDVIVQEMQDSGSYLSCCLNAVTLALLDACLP 131
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
++Y +AAV+CIIN + E+ LD + Q
Sbjct: 132 LKYTVAAVTCIINREGELHLDPTKSQ 157
>gi|410910298|ref|XP_003968627.1| PREDICTED: exosome complex component RRP46-like [Takifugu rubripes]
Length = 219
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 99/147 (67%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR+ + ++LSR DGS F QG T V+A +YGP E K+ K I D+A++EV+ +PK GL
Sbjct: 10 TLRDFSCEQSLLSRPDGSSSFMQGDTSVLAGVYGPAEVKVSKEIYDRATLEVLIQPKVGL 69
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V++R +E ++ TCE++LL LHPR+S+ L +Q L D GSLLSC +NAAC+AL+++G+
Sbjct: 70 PSVKERSQEQNVRETCEASLLLSLHPRSSLTLVLQVLHDDGSLLSCFLNAACMALMDAGL 129
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
M + V+C I E+I D Q
Sbjct: 130 PMSCLFCGVTCAIAVDGEIITDPTAAQ 156
>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
Length = 223
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 104/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
++LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 6 ETLRQMNCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V DR++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 66 LPQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 125
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++Y AAV IIN++ E +LD +Q ++
Sbjct: 126 LPLKYSFAAVHAIINEQGEYVLDPDQSET 154
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 101/141 (71%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+RE++ L L + DGSV S GQT V++++YGPVE K+ K I DKA++ I +PK G+S
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMS 60
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V++++ E ++ TCE A++ LHPR+++ + +Q + D GSLLSC INAACL+L+++G+
Sbjct: 61 AVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLINAACLSLVHAGLP 120
Query: 124 MRYILAAVSCIINDKNEVILD 144
MR ++ +V C + + +E ++D
Sbjct: 121 MRNMIVSVCCAVTNNDEYLVD 141
>gi|363746058|ref|XP_003643513.1| PREDICTED: exosome complex component RRP46-like, partial [Gallus
gallus]
Length = 173
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 94/147 (63%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + +LSR DGS F QG T V+A +YGP E K + D A+VEV+ RPK GL
Sbjct: 11 SLRPFSCEQGLLSRPDGSATFVQGDTSVLAGLYGPAEVKGSRESPDGATVEVLLRPKVGL 70
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V +R +E +++ T E+ LL LHPRTS+ + +Q L D GSLL+CC+NAAC+ L+++G+
Sbjct: 71 PGVAERSREQLLRRTFEAVLLGSLHPRTSITVVLQVLSDAGSLLACCLNAACMGLLDAGL 130
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
+ + V+C ++ ++ILD Q
Sbjct: 131 PLSSLFCGVTCALDPHGDIILDPTARQ 157
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 96/151 (63%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ SLR + + +LSR DGS + QG T V+A +YGP E K+ K I DKA++EV+ RPK
Sbjct: 13 LPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKV 72
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
GL V +R +E +IK TCE+ +L LHPR+S+ + +Q + D GSLL+ C+NAAC+ L+++
Sbjct: 73 GLPGVYERSREQMIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDA 132
Query: 121 GISMRYILAAVSCIINDKNEVILDANQIQSN 151
G+ M + V+C ++ LD Q
Sbjct: 133 GLPMGSLFCGVTCALDADGNFTLDPTAKQEK 163
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 96/129 (74%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + +L+ LSR DGS +F+ G T+ ++++YGP E + QK + + A+VEV+F+ K+G+
Sbjct: 6 MRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGVP 65
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ D++KE + + C++A+L+ HPRTS+ + +QE+QD G LL+C +N+ACLAL+N+GI
Sbjct: 66 SISDKIKEVSLNNICKTAILSSQHPRTSISIIVQEMQDYGGLLACSVNSACLALLNAGIP 125
Query: 124 MRYILAAVS 132
++Y+ AA S
Sbjct: 126 LKYVFAADS 134
>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
Length = 234
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 104/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR + + N LSR DGSV++SQG +VV++++ GPVE K Q ID + +E +RPK+G
Sbjct: 12 DQLRRMHCEFNPLSRCDGSVMYSQGASVVISAVLGPVEVKSQNLSIDGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++RL+E+ IK + +L+ +PR+ + + +QEL+D+GS+ +C +N+ACLA++ G
Sbjct: 72 LPQVKERLREAAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDACAVNSACLAMLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++ AAV CII+++ + +LD + ++
Sbjct: 132 LPLKCSFAAVHCIIDEQGDYVLDPDHSET 160
>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex component RRP46 [Callithrix jacchus]
Length = 179
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 86/122 (70%)
Query: 23 FSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESAL 82
G T V+A +YGP E K+ K I +KA++EVI RPK GL V ++ +E +I++TCE+ +
Sbjct: 21 LGSGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVV 80
Query: 83 LTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVI 142
L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+ MR + V+C ++ ++
Sbjct: 81 LGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 140
Query: 143 LD 144
LD
Sbjct: 141 LD 142
>gi|427786901|gb|JAA58902.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 231
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 100/146 (68%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+L ++ + LSR DGS I +QG+TVV A +YGPVE K + +KA+VEV FR KSG
Sbjct: 14 LRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSGQQ 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
DR+ E VI+ST E+A+LT LHPR+ + LT QE + G LL+C INAACLA I++ +S
Sbjct: 74 SCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEFHNNGGLLACAINAACLAAIDAAVS 133
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+ +AAV+ I + ++LD + Q
Sbjct: 134 MKCHIAAVTAAITNTGIIVLDPDGQQ 159
>gi|427786915|gb|JAA58909.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 226
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 100/146 (68%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+L ++ + LSR DGS I +QG+TVV A +YGPVE K + +KA+VEV FR KSG
Sbjct: 9 LRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSGQQ 68
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
DR+ E VI+ST E+A+LT LHPR+ + LT QE + G LL+C INAACLA I++ +S
Sbjct: 69 SCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEFHNNGGLLACAINAACLAAIDAAVS 128
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+ +AAV+ I + ++LD + Q
Sbjct: 129 MKCHIAAVTAAITNTGIIVLDPDGQQ 154
>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
Length = 240
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 105/146 (71%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LRE+ + N LSR DGSV++SQG TVV+A++ GP+E K Q I+ + +E +RPK+G
Sbjct: 12 DKLREMHCKFNALSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V++R++E+ I+ E ALL+ +PR + + +QEL+D+GS+ +C +NAACLA++ G
Sbjct: 72 LPQVKERIREAAIRDVLELALLSEAYPRAKMSVQVQELEDRGSIDACALNAACLAMLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
+ ++Y AAV CIIN++ E +LD +Q
Sbjct: 132 LPLKYSFAAVHCIINEQGEFVLDPDQ 157
>gi|390370164|ref|XP_793149.3| PREDICTED: exosome complex component RRP46-like [Strongylocentrotus
purpuratus]
Length = 191
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 92/126 (73%)
Query: 26 GQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTM 85
G T V+A++YGP + K K ++DKA+V V ++PK G+S V+++ E +I++TCE+ LLT
Sbjct: 6 GDTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGVREKALERMIRNTCETVLLTT 65
Query: 86 LHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDA 145
L PR+SV + +QE+QD G+LL+C INAACLA+IN+GI M+ +AA C++ E+I+D
Sbjct: 66 LFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVAASCCMMGKDEELIMDP 125
Query: 146 NQIQSN 151
+ Q+
Sbjct: 126 TKEQTK 131
>gi|354499539|ref|XP_003511866.1| PREDICTED: exosome complex component RRP46-like [Cricetulus
griseus]
Length = 279
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 89/130 (68%)
Query: 20 SVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCE 79
S + ++ T V+A +YGP E K+ K I +KA++EVI RPK GL V ++ +E +I++TCE
Sbjct: 99 SALRTRRDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE 158
Query: 80 SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKN 139
+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+ MR + VSC ++
Sbjct: 159 AVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVSCALDSDG 218
Query: 140 EVILDANQIQ 149
++L Q
Sbjct: 219 NLVLGPTTKQ 228
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 94/139 (67%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFV 65
+ + ++N L +DGS +SQG+T V+ ++YGP + K K IDKA VEV FRPK G V
Sbjct: 18 KFQCEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTV 77
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
++ E ++ CE+A++ LHPRT+ + +Q +QDQGSLLSC INA C+AL ++G+SM+
Sbjct: 78 NEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMK 137
Query: 126 YILAAVSCIINDKNEVILD 144
++ AV+ + ++E L+
Sbjct: 138 HLPVAVTVALRKESESELE 156
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 100/150 (66%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R ++S+L +L+++DGS FS + V+A++YGPVE +K I KA+VEV+F P SG
Sbjct: 10 NQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKISKATVEVVFTPDSG 69
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q + +ES+I++ ES ++TMLHPRT + + IQ GS++SC INAACLAL+++G
Sbjct: 70 NQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDGSIVSCSINAACLALLDAG 129
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQSN 151
I + ++A++S N ++ LD + N
Sbjct: 130 IELNSLIASISLSFNSDGQIYLDPTMKEEN 159
>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
Length = 269
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + + NILSRSD S SQG T V+ S GP E K++ + A +EV +R +GL
Sbjct: 6 SLRRMICETNILSRSDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYRSNAGL 65
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+Q+RL ES+IK + + + PR++V + +QE+ D+G LL+CCINA CLALI GI
Sbjct: 66 EDIQNRLVESLIKRSFVRVVASTAFPRSAVYVFVQEMTDKGGLLACCINATCLALITGGI 125
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
+ + +AAV CII++ +ILD + Q
Sbjct: 126 ELNFTVAAVHCIIDEDGNMILDPDSKQ 152
>gi|449510334|ref|XP_002198831.2| PREDICTED: exosome complex component RRP46-like, partial
[Taeniopygia guttata]
Length = 208
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 87/132 (65%)
Query: 20 SVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCE 79
S G T V+A +YGP EAKI K + D+A+++V+ RPK GL V +R +E +++ TCE
Sbjct: 17 SPALCPGDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLPGVLERSREQLLQQTCE 76
Query: 80 SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKN 139
+ +L +LHPRT++ L +Q L D GSLLSCC+NAAC+AL+++G+ + + V+C +
Sbjct: 77 AVVLGVLHPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLPLSALFCGVTCALQPDG 136
Query: 140 EVILDANQIQSN 151
++LD Q
Sbjct: 137 AILLDPTARQEQ 148
>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
Length = 239
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 105/147 (71%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE+ + N LSR DGSV++SQG TVV+A++ GP+E K Q I+ + +E +RPK+GL
Sbjct: 14 LREMHCKFNPLSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAGLP 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V++R++E+ I+ E ALL+ +PR + L +QEL+D+GS+ +C +NAACLA++ G+
Sbjct: 74 QVKERIREAAIRDVLELALLSEAYPRAKMSLQVQELEDRGSIDACALNAACLAMLIGGLP 133
Query: 124 MRYILAAVSCIINDKNEVILDANQIQS 150
++Y AAV CIIN+K + ILD + ++
Sbjct: 134 LKYSFAAVHCIINEKGDFILDPEESET 160
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 91/132 (68%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LREL + +LSR+DGS FSQ T + ++YGP E K K ++DKA+V+ +FRPK+G
Sbjct: 11 NQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSKELLDKATVQTVFRPKTG 70
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L+ V D + E++++ E + +PRTS+ + +Q + D G+LL+C +N+A +ALI++G
Sbjct: 71 LAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHDDGALLACALNSASMALIDAG 130
Query: 122 ISMRYILAAVSC 133
+ M +LAAV+C
Sbjct: 131 VPMSAVLAAVTC 142
>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
tropicalis]
Length = 181
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 84/116 (72%)
Query: 31 VASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRT 90
+A +YGP E K+ + I +KA++EVI RPK+GL +Q++ +E +I+ TCES ++ LHPRT
Sbjct: 1 MAGVYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRT 60
Query: 91 SVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
S+ + +Q + D GSLLSCC+NAAC+ L+++G+ MR + V+C +++ + LD N
Sbjct: 61 SITIVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRALFCGVTCAMDNDGTITLDPN 116
>gi|442750019|gb|JAA67169.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 223
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 101/146 (69%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+L + + +SR DGS + + G+TV+ A +YGP+E + + + +KA+VEV +R K+G
Sbjct: 9 LRKLAVKFDNVSRPDGSALLAHGETVIQAGVYGPIEVRQARELAEKATVEVFYRSKTGHQ 68
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
DRL E V++ST E+ +L LHPRT + +++QEL + GSLL+CCINAACLA +++ I+
Sbjct: 69 NCSDRLVEKVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAVDAAIA 128
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+ +AAVS I ++LD N+ Q
Sbjct: 129 MKCQVAAVSAAITHTGIIVLDPNKKQ 154
>gi|270010733|gb|EFA07181.1| hypothetical protein TcasGA2_TC010182 [Tribolium castaneum]
Length = 175
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 4 LRELKS--QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +LKS +L ILSR DGSV+FSQ +T VVA +YGPVE+K K +++KA VE FRPKSG
Sbjct: 1 MSKLKSSCKLGILSRPDGSVLFSQDETTVVAGVYGPVESKANKALVEKACVEAHFRPKSG 60
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
L V+DRL ES+I++ CE+A+ T ++PRTSV++ IQE+Q+ G +
Sbjct: 61 LPGVKDRLNESIIRNVCEAAIATAMYPRTSVVVVIQEMQNNGQV 104
>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
carolinensis]
Length = 262
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 39/188 (20%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ SLR + + +LSR DGS + QG T V+A +YGP E K+ K I DKA++EV+ RPK
Sbjct: 13 LPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKV 72
Query: 61 GLSFVQ---------------------------------------DRLKESVIKSTCESA 81
GL +Q +R +E +IK TCE+
Sbjct: 73 GLPGLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSREQMIKKTCEAV 132
Query: 82 LLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEV 141
+L LHPR+S+ + +Q + D GSLL+ C+NAAC+ L+++G+ M + V+C ++
Sbjct: 133 VLGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADGNF 192
Query: 142 ILDANQIQ 149
LD Q
Sbjct: 193 TLDPTAKQ 200
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 92/146 (63%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L ++L R+ GS ++QG+T V+A++YGP + +KAS+EVI++P +G
Sbjct: 12 NQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEVIWKPNTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
DR E ++K T ES + ++P T+ + +Q + D G+LL C INAAC AL+++G
Sbjct: 72 HVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I +R++ A+ C + D N +ILD ++
Sbjct: 132 IPLRHLAVAICCSVTDNNSIILDPSK 157
>gi|395751236|ref|XP_002829311.2| PREDICTED: exosome complex component RRP46, partial [Pongo abelii]
Length = 207
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 22/144 (15%)
Query: 28 TVVVASMYGPVEAKIQKTIIDKASVEVIFRPK-----------SGLSF-----------V 65
T V+A +YGP E K+ K I +KA++EVI RPK SGL+F V
Sbjct: 2 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPAGVSGWQSGLAFFPLESSIIPAGV 61
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+ MR
Sbjct: 62 AEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMR 121
Query: 126 YILAAVSCIINDKNEVILDANQIQ 149
+ V+C ++ ++LD Q
Sbjct: 122 ALFCGVTCALDSDGTLMLDPTSKQ 145
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 95/141 (67%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + + +LSR+DGS F+ G++ V+ S+YGP ++ + +D A ++V+F P SG+S
Sbjct: 27 LRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKLDHAHIQVVFSPVSGIS 86
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
Q+R E I+ E+ +L+ LHPRT++ +T+Q L D GS+LS INAA LALI++GI
Sbjct: 87 GTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQVLFDDGSILSTAINAAVLALIDAGIP 146
Query: 124 MRYILAAVSCIINDKNEVILD 144
+ +AV+C+I+ + ++LD
Sbjct: 147 LSKTCSAVTCMISKEGVLLLD 167
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKASVEVIFRPKSGL 62
LR ++S+ ++L+++DGS FSQ +T V+A++YGP+E +K I K+ VEV F P G
Sbjct: 18 LRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILKSYVEVTFTPALGN 77
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ D+ KE ++K+ ES +LT LHPRT V + IQ D GS++SC INAACLAL+++GI
Sbjct: 78 TTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSDDGSIVSCSINAACLALLDAGI 137
Query: 123 SMRYILAAVSCIINDKNE 140
M ++ +++ + D +E
Sbjct: 138 EMNGLIGSITLMNEDDDE 155
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 14 NQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q+R E +K T +S L +HP T+ + +Q + D GSL+SC INA+C AL +G
Sbjct: 74 QIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASCAALAFAG 133
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+SC + D VILD ++ +
Sbjct: 134 IPMKHLAVAISCGVMDNGVVILDTSRAE 161
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIFRPKS 60
+ +R ++S+ +L+++DGS FSQG++ V+A++YGP++ K +K I K+ V+V F P +
Sbjct: 92 NQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVDVSFTPAT 151
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
G + D+ +E ++++ ES +LT+LHPRT + + +Q + GS++SC INA CLAL+++
Sbjct: 152 GNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGSIISCAINACCLALLDA 211
Query: 121 GISMRYILAAVSCIINDKNEVILDANQIQSN 151
GI + ++++++ N++ LD Q + N
Sbjct: 212 GIELNCLISSITLSFTHDNQIYLDPTQKEEN 242
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 14 NQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q+R E +K T +S L +HP T+ + +Q + D GSL+SC INA+C AL +G
Sbjct: 74 QIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASCAALAFAG 133
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+SC + D VILD ++ +
Sbjct: 134 IPMKHLAVAISCGVMDNGVVILDTSRAE 161
>gi|432906534|ref|XP_004077577.1| PREDICTED: exosome complex component RRP46-like [Oryzias latipes]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLRE + ++LSR DGS F QG T V+A +YGP E K+ K I D+A++EV+ +PK GL
Sbjct: 10 SLREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGL 69
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V++R +E ++ TCE ALL LHPR+S+ L +Q L D GSLLS C + L L+ S
Sbjct: 70 PSVRERSQEQCVRETCEEALLLTLHPRSSLTLVLQVLHDDGSLLS-CYHTPDLTLLESRA 128
Query: 123 SMRYIL 128
M + +
Sbjct: 129 LMTFAI 134
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKASVEVIFRPKS 60
+S+R ++S+ L+++DGS FSQ ++ V+A++YGP+E +K I K+ VEV F P
Sbjct: 14 NSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAF 73
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
G + D+ KE +IK+ ES +LT L+PRT + + +Q D GS++SC INAACLAL+++
Sbjct: 74 GNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDA 133
Query: 121 GISMRYILAAVSCIINDKNEVILDANQIQSN 151
GI M +L +V+ N+ + +D + + N
Sbjct: 134 GIEMNGLLGSVTLCFNNDGSIYVDPSTEEEN 164
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L ++L R+ GS ++QG+T V+A++YGP + +KAS+EVI++P +G
Sbjct: 12 NQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEVIWKPNTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
DR E ++K T ES + ++P T+ + + + D G+LL C INAAC AL+++G
Sbjct: 72 HVGQADREYEMILKKTLESICIRTIYPNTTTSVIV--VHDDGALLPCAINAACAALVDAG 129
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I +R++ A+ C + D N +ILD ++
Sbjct: 130 IPLRHLAVAICCSVTDNNSIILDPSK 155
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 90/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS +SQG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 12 NQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRKGENPEKASIEVVWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
S Q++ E +K T +S L +HP T+ + +Q + D GSLL C INA+C AL+ +G
Sbjct: 72 QSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQVMGDDGSLLPCAINASCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + VILD ++ +
Sbjct: 132 IPLKHLAVAIGCGVLGNGAVILDTSKAE 159
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 94/148 (63%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L N+L+R+ GS +SQG T V+A++YGP + +KAS+EVI++PK+G
Sbjct: 12 NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+R E ++K T +S + +P T+ + +Q + D G+LL C INA+C AL+++G
Sbjct: 72 QIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+SC +++ VILD +I+
Sbjct: 132 IPLKHLAVAISCCLSENGYVILDPTKIE 159
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 94/148 (63%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L N+L+R+ GS +SQG T V+A++YGP + +KAS+EVI++PK+G
Sbjct: 12 NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+R E ++K T +S + +P T+ + +Q + D G+LL C INA+C AL+++G
Sbjct: 72 QIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+SC +++ VILD +I+
Sbjct: 132 IPLKHLAVAISCCLSENGYVILDPTKIE 159
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 90/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L NIL R GS +SQG T V+A++YGP + +KA EVI++PK+G
Sbjct: 12 NQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T +S + ++P T+ + IQ + D GSLL C INAAC AL+++G
Sbjct: 72 QIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+ C + D ++LD N+++
Sbjct: 132 IPMKHLAVAICCCLADNGYLVLDPNKLE 159
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 13 NQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTG 72
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q+R E +K T +S L +HP T+ + +Q + D GSLL C INA+C AL +G
Sbjct: 73 QIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPCAINASCAALAFAG 132
Query: 122 ISMRYILAAVSCIINDKNEVILD 144
I M+++ A+ C + D VILD
Sbjct: 133 IPMKHLAVAICCGVMDNGAVILD 155
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 90/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L NIL R GS +SQG T V+A++YGP + +KA EVI++PKSG
Sbjct: 12 NQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T +S + ++P T+ + IQ + D GSLL C INAAC AL+++G
Sbjct: 72 QIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+ C + + ++LD N+++
Sbjct: 132 IPMKHLAVAICCCLAENGYLVLDPNKLE 159
>gi|347967317|ref|XP_308011.5| AGAP002177-PA [Anopheles gambiae str. PEST]
gi|333466351|gb|EAA03766.5| AGAP002177-PA [Anopheles gambiae str. PEST]
Length = 226
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 89/147 (60%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR + + N+LSRSD S SQG T V+ + GP E K + + +EV +R +G
Sbjct: 14 NLRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQYRSNAGQ 73
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+Q RL ES+IK + + T R++V + +QE+ D+G LL+C INA+CLALI SG+
Sbjct: 74 EDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSINASCLALITSGV 133
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
+ + +AAV CI+ + +ILD + Q
Sbjct: 134 ELNFTVAAVHCIMTEDGAMILDPDHKQ 160
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L +IL R+ GS ++QG+T V+A++YGP + +KAS+EVI++PK+G
Sbjct: 12 NQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T ES + ++P T+ + +Q + D G+LL C INAAC AL+++G
Sbjct: 72 QIGKMEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I ++++ A+ C + D +ILD +
Sbjct: 132 IPLKHLAVAICCSVTDSGCIILDPTK 157
>gi|384498296|gb|EIE88787.1| hypothetical protein RO3G_13498 [Rhizopus delemar RA 99-880]
Length = 246
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 20/165 (12%)
Query: 5 RELKSQLNILSRSDGSVIFS-------------------QGQTVVVASMYGPVEAKIQKT 45
R L + NILSR+DGS F +G T V+ S+ GPVE +++
Sbjct: 15 RTLSASQNILSRADGSAKFEFGIKRNQTYCYLHAYICLQKGTTSVICSVSGPVEVQMRDE 74
Query: 46 IIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
+D+A+VEVI RP G+ +++L E+ +++T E +L + PRT + +T+Q ++D GS+
Sbjct: 75 KLDEATVEVIVRPAKGVRATKEKLIENTLRTTFEPIILGGMMPRTLIQITVQVIKDDGSV 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQ 149
L+ INA LAL+++GI ++Y+ AAV+C+ ++K EV+LD ++
Sbjct: 135 LAASINAIALALLDAGIPLKYMAAAVTCMFDNKTCEVVLDPTAVE 179
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L +IL R+ GS ++QG+T V+A++YGP + +KAS+EVI++PK+G
Sbjct: 12 NQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T ES + ++P T+ + +Q + D G+LL C INAAC AL+++G
Sbjct: 72 QIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACTALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I ++++ A+ C + D +ILD +
Sbjct: 132 IPLKHLAVAICCSVTDSGCIILDPTK 157
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 91/146 (62%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L +IL RS GS ++QG+T V+A++YGP + +KAS+EVI++PK+G
Sbjct: 12 NQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T ES + ++P T+ + +Q + D G+LL C INAAC AL+++G
Sbjct: 72 QIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I ++++ A+ C + D +ILD +
Sbjct: 132 IPLKHLAVAICCSVTDSGCIILDPTK 157
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 14 NQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + D GSLL C INA+C AL+ +G
Sbjct: 74 QIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAINASCAALVFAG 133
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+ C + VILD ++ +
Sbjct: 134 IPMKHLAVAIGCGVLPDGSVILDTSKAE 161
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + + GSLL C INA C AL+ +G
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + EVILD N+ +
Sbjct: 132 IPLKHLAVAIGCGVLEDGEVILDTNKAE 159
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + + GSLL C INA C AL+ +G
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + EVILD N+ +
Sbjct: 132 IPLKHLAVAIGCGVLEDGEVILDTNKAE 159
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 93/148 (62%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L N+L+R+ GS + QG T V+A++YGP + +KA +EVI++PK+G
Sbjct: 12 NQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKACIEVIWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T ++ + ++P T+ + +Q + D G+LL+C INAAC AL+++G
Sbjct: 72 QIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDGALLTCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+ C +++ VILD +++
Sbjct: 132 IPMKHLAVAICCCLSESGYVILDPTKLE 159
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + + GSLL C INA C AL+ +G
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + EVILD N+ +
Sbjct: 132 IPLKHLAVAIGCGVLEDGEVILDTNKAE 159
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 90/146 (61%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L N+L R+ GS +SQG T V+A++YGP + +KA +EVI++PK+G
Sbjct: 14 LRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVIWKPKTGQI 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ E ++K T +S + L+P T+ + +Q + D G+LL C INAAC AL+++GI
Sbjct: 74 GKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAINAACAALVDAGIP 133
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+++ A+ C + + VILD +++
Sbjct: 134 MKHLAVAICCCLAEGGYVILDPTKLE 159
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L N+L R+ GS +SQG T V A++YGP + +KA VEVI++PK+G
Sbjct: 14 LRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKACVEVIWKPKTGQI 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+R E ++K T +S + L+P T+ + +Q + D G+LL C INAAC AL+++ I
Sbjct: 74 GKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCAINAACAALVDARIP 133
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
M+++ A+ C + D VILD +++
Sbjct: 134 MKHLAVAICCCLADVGYVILDPTKLE 159
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 89/146 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L ++L R+ GS ++QG+T V A++YGP + +KAS+EV ++P +G
Sbjct: 12 NQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKKNENPEKASIEVTWKPNTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T ES + ++P T+ + +Q + D G+LL C INAAC AL+++G
Sbjct: 72 QIGQVEKGYEMILKRTLESICIRSIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQ 147
I +R++ A+ C + D + +ILD +
Sbjct: 132 IPLRHLAVAICCSVADNSCIILDPTK 157
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR+++ +L +L ++DGSV FSQG T V+ S+ GP + +K D+A ++V+F+P+ +
Sbjct: 17 LRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKG--DQAIIDVMFQPRDKKA 74
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+++ E +I+ T E+ +LT ++PRT + ++IQ +Q G LLS +NAA LAL+++G++
Sbjct: 75 SEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDGCLLSASLNAASLALLDAGVA 134
Query: 124 MRYILAAVSCIINDKNEVILDANQIQSN 151
M+ L + SC + + +LD +I+ +
Sbjct: 135 MKTTLVSSSCSYLNSGDCLLDPTRIEQD 162
>gi|198433182|ref|XP_002130561.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
intestinalis]
Length = 193
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 74/108 (68%)
Query: 33 SMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSV 92
++YGP + K K IDKA VEV FRPK G V ++ E ++ CE+A++ LHPRT+
Sbjct: 3 AVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVNEKYLERFVQGVCENAIMLALHPRTAF 62
Query: 93 ILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNE 140
+ +Q +QDQGSLLSC INA C+AL ++G+SM+++ AV+ + ++E
Sbjct: 63 AIIVQIMQDQGSLLSCAINAVCVALQDAGVSMKHLPVAVTVALRKESE 110
>gi|440796320|gb|ELR17429.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 236
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 94/160 (58%), Gaps = 22/160 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR + S+L +L++ DGS ++ G++ VV ++YGP+E K + I+D+A+++V + P SG
Sbjct: 12 NQLRAVTSELGLLNKPDGSAKYTAGKSAVVVAVYGPIEVKHRDEILDRATIKVHWSPSSG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++R KE ++ + ++A++ LHPRT + + +Q +L+ INA CLAL+++G
Sbjct: 72 TGGPEEREKEMIVANVVQNAIIATLHPRTLIEIVVQ-------MLAAAINATCLALVDAG 124
Query: 122 ISMRY---------------ILAAVSCIINDKNEVILDAN 146
I ++Y +A+V+C I +LD +
Sbjct: 125 IPLKYRPAHPTLDFALELLSWIASVTCAIAQNGVFVLDPD 164
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIFRPKS 60
+ LR +L L+R+DGS F+QGQT V+A++YGP + +K ++ A+VEV P
Sbjct: 34 NQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHY 93
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
GL+ ++ KE +K+ E+A+ PRT + + Q +D G L++C +NAA LA+IN+
Sbjct: 94 GLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNGGLMACLMNAASLAVINA 153
Query: 121 GISMRYILAAVS 132
GI M+Y+ VS
Sbjct: 154 GIDMKYVPLTVS 165
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 95/146 (65%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L +L+R+ GS +SQ T V+A++YGP A ++K ++A +EV++R KSGLS
Sbjct: 28 LRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIEVVWRAKSGLS 87
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ E V++ + E +LT LHP T++ + +Q + D GSLL+C +NAAC AL+++GI
Sbjct: 88 GSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACAMNAACAALVDAGIP 147
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ +L+AVSC + +V LD + +
Sbjct: 148 LNGLLSAVSCGVTHDGQVFLDPTKPE 173
>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
Length = 247
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 100/143 (69%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L + ++L R+DGS ++Q + V+A++YGP +AK QK ++A VEV+++P++GL
Sbjct: 24 LRTLVCERSVLDRADGSAKWTQEGSSVLAAVYGPRQAKPQKEDAEQAVVEVVYKPRAGLQ 83
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+DR E ++ E + ++PRTS+++ +Q LQ G++LSC +NAAC AL+++GI+
Sbjct: 84 GHEDRTFELEVRGILEGVIPLGMYPRTSIMVVLQVLQGDGAVLSCALNAACAALVDAGIA 143
Query: 124 MRYILAAVSCIINDKNEVILDAN 146
M + A+V+C++ ++ ++LD++
Sbjct: 144 MTSMYASVTCVLTEEERLLLDSD 166
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 87/138 (63%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
+IL RS GS ++Q +T V+A++YGP + KAS++VI++PK+G ++ E
Sbjct: 24 SILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPKKASIKVIWKPKTGQIGKVEKEYE 83
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAV 131
++K T ES + ++P T+ ++ +Q + D G LL C INAAC+AL+++ I +++++ A+
Sbjct: 84 MILKRTLESICIRTIYPNTTTLVIVQIVHDDGVLLPCAINAACVALVDARIPLKHLVVAI 143
Query: 132 SCIINDKNEVILDANQIQ 149
C I D +ILD + Q
Sbjct: 144 CCSITDSGCIILDPTKDQ 161
>gi|417396273|gb|JAA45170.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 151
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 65/92 (70%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T ++A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVIL 94
V ++ +E +I++TCE+ +L +LHPRTS+ +
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGVLHPRTSITV 118
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 88/146 (60%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + +L L R+DGS QG+T VVA++YGP+EA+ + + D+ V+V RP G +
Sbjct: 18 IRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRNELPDRTFVDVSIRPFQGYT 77
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
RL+E +K ++ + T + PR+ V + IQ +++ GSL++ INA L+L+++GI
Sbjct: 78 TDYLRLRERELKEIFDATIATEIQPRSCVTIVIQIIENDGSLMAAVINACMLSLLSAGIP 137
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
++ A+ + K+ V+LD ++
Sbjct: 138 CHWLAASCTVSYRGKDGVLLDPTLVE 163
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 14/154 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP----K 59
LR ++ L +L + DGS FS G + V+A++YGP + + + D+++VEV + +
Sbjct: 14 LRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEVAWHSAPDNE 73
Query: 60 SGLSFVQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQGSLLSCCINAACLAL 117
G + +Q L E V+ + L +H PR+++ + IQEL + G +L+C INA CLAL
Sbjct: 74 QGAA-LQSHLTEFVVNA------LASIHDFPRSAIRVVIQELNNDGGMLACAINATCLAL 126
Query: 118 INSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+++GIS+ + AA SC + D ++ILD I+ N
Sbjct: 127 MDAGISLTAMFAAASCAVVD-GQLILDPTLIEQN 159
>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
Length = 168
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 4 LRELKSQLNILSRSDGSVIFSQG--QTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+R++K++ N L R++GS + QG ++VV+A++YGP + + +K +DK ++EV +RP G
Sbjct: 1 MRQMKTERNPLQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEVCWRPPFG 60
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L D E ++ T E +LT +PR + + +Q + G++ +C +NA C AL+++G
Sbjct: 61 LQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAVEACAMNATCHALMDAG 120
Query: 122 ISMRYILAAVSCII 135
+ M L A + I
Sbjct: 121 VEMFGTLVAATVAI 134
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 94/145 (64%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
R L + +L R+DGS ++Q + V+A++YGP +AK+QK ++A VEV+F+P++GL
Sbjct: 3 RTLVCERAVLDRADGSAKWTQEGSSVLAAVYGPRQAKLQKEDAERAVVEVVFKPRAGLQG 62
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+DR E I+ E + + PRTSV++ +Q LQD G LSC +NAA AL+++G+ +
Sbjct: 63 HEDRSLELEIRGILEGVIPLGMFPRTSVMVVLQVLQDDGGALSCALNAAAAALVDAGVPL 122
Query: 125 RYILAAVSCIINDKNEVILDANQIQ 149
+ ++VSC++ ++LD + ++
Sbjct: 123 NSMFSSVSCVLTSDRRLVLDPDALE 147
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 91/148 (61%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L NIL+R+ GS +SQG T V+A++YGP + +KA +EV+++PK+G
Sbjct: 12 NQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T +S L ++P T+ + IQ + D G+LL C INAAC AL+++
Sbjct: 72 QIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAINAACAALVDAA 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + VILD +++
Sbjct: 132 IPLKHLAVAICCCLTESGYVILDPTKVE 159
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 91/148 (61%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L NIL+R+ GS +SQG T V+A++YGP + +KA +EV+++PK+G
Sbjct: 14 NQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T +S L ++P T+ + IQ + D G+LL C INAAC AL+++
Sbjct: 74 QIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAINAACAALVDAA 133
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + VILD +++
Sbjct: 134 IPLKHLAVAICCCLTESGYVILDPTKVE 161
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKASVEVIFRPKS 60
+ +R L ++ IL+R+DGS F QG T V+A++YGP AK ++ + A+++V F+P+S
Sbjct: 12 NQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPES 71
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
G++ D E++++ + E +L +PRT V + IQ + D G++LS +NAA +AL+N+
Sbjct: 72 GITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNA 131
Query: 121 GISMRYILAAVSCIIN---DKNEVILD 144
G+ M + +V+C I V+LD
Sbjct: 132 GVEMTGMALSVTCCITATVSGRSVLLD 158
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 14/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R L ++ +L+R+DGS + QG T + ++YGP E+ QK++ D+AS++ F S
Sbjct: 20 NEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIKCEF-AMSS 78
Query: 62 LSFVQDRLKE----------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
S + ++K ++IK ES +LT L PR+ + + +Q LQ G L S IN
Sbjct: 79 FSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQSDGGLKSAAIN 138
Query: 112 AACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
A LA+I++GI MR Y+ A + I + ++D N ++
Sbjct: 139 AVTLAMIDAGIPMRDYVCACSATFI--EGSALMDLNHME 175
>gi|213409001|ref|XP_002175271.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
gi|212003318|gb|EEB08978.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
Length = 214
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
+++ ILS+SDGS + Q T V+ S+ GP+E K + I ++A+ E++ P SG+S ++R
Sbjct: 2 NKIGILSQSDGSSDWKQRDTRVLCSVNGPIEVKPRSEIPNRATFELLVSPISGVSGTKER 61
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSCCINAACLALINSGISMRYI 127
S I S E A+L+ +PRT + + +Q ++ D+ LL+ INA LA +++GI+M+Y+
Sbjct: 62 FLASRILSVLEDAVLSTNYPRTLIQVNVQIVEGDENDLLAAAINATVLAFLDAGIAMKYM 121
Query: 128 LAAVSCIINDKNEVILDANQI 148
A+SC + E + N +
Sbjct: 122 PCAISCAWKNPKETQANENAM 142
>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
gi|29336579|sp|O42894.1|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
Length = 226
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
+++ ILSRSDGS + QG V+ + GP++ KI+ ++KA+VEV+ +P SG++ ++
Sbjct: 2 NRIGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEK 61
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-LLSCCINAACLALINSGISMRYI 127
+ S I E A+ +PRT + ++IQ +++ G+ L+ IN A LAL+++GIS++YI
Sbjct: 62 MISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYI 121
Query: 128 LAAVSCIINDK 138
A++C +K
Sbjct: 122 PCAINCHWKNK 132
>gi|453089972|gb|EMF18012.1| hypothetical protein SEPMUDRAFT_15620, partial [Mycosphaerella
populorum SO2202]
Length = 197
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 12/149 (8%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L+R+DGS +FS V+A + GPV+ + + + D+A++EV RP SG+ ++R E+V
Sbjct: 10 LARADGSTVFSDDLYTVIAGVNGPVDVQRRDELPDQAAIEVNLRPTSGVGGPRERWLETV 69
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQG----------SLLSCCINAACLALINSGIS 123
I+S +S +L +HPRT + +T+Q ++ S L +NAA +AL++ G+
Sbjct: 70 IQSVLKSIVLVHMHPRTLIQVTLQITKEPATKFRKTTTDISTLPALLNAAFIALVDGGLP 129
Query: 124 MRYILAAVSCIINDKNEVIL--DANQIQS 150
M ++AV ++ E IL +AN IQ+
Sbjct: 130 MATTMSAVLAVVATNGETILSPNANAIQN 158
>gi|452989450|gb|EME89205.1| hypothetical protein MYCFIDRAFT_111815, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 199
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
LSR+DGS +FS G ++A + GPVE + + + ++A++EV FRP SG+ ++R E +
Sbjct: 11 LSRADGSSVFSDGLYTIIAGVNGPVEVQRRDELPEEAAIEVNFRPSSGVGGPRERWLEGI 70
Query: 74 IKSTCESALLTMLHPRTSVILTIQ---ELQDQG-------SLLSCCINAACLALINSGIS 123
++ S LL LHPRT T+Q + Q Q ++L INA+ A I+ G+
Sbjct: 71 MQKVLRSILLVHLHPRTLFQFTVQVSNQPQTQFRKTTGDIAILPALINASLTAAIDGGVP 130
Query: 124 MRYILAAVSCIINDKNEVILDANQ 147
+ +AV ++ D +V++D ++
Sbjct: 131 LATTTSAVLAVVTDSGKVVVDPSE 154
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 10/158 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC-----CINAACL- 115
Q++ E +K T +S L +HP T+ + +Q + + GS+ C I + CL
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSVSFCRNVLLSIVSGCLL 131
Query: 116 ----ALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+L+ +GI ++++ A+ C + + EVILD N+ +
Sbjct: 132 DYEHSLVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAE 169
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 12/140 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ------KTIID-KASVEVIF 56
+R +K +LN+ SR+DGS + QG T V+A++YGP E K + + II+ + S+
Sbjct: 23 IRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFS 82
Query: 57 RPKSGLSFVQDRLKES---VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ F +DR VI+ T ES +LT L+PRT + + +Q LQ G CINAA
Sbjct: 83 TGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAA 142
Query: 114 CLALINSGISMRYILAAVSC 133
LAL+++GI M+ + VSC
Sbjct: 143 TLALLDAGIPMKDFV--VSC 160
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 20/161 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ--KTIIDKASVEVIF----- 56
+R+L L + +++DGS +G TVV+A++YGP E + K + D+A V F
Sbjct: 22 MRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVKALHDRAVVNCQFSAATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP+ V+ L ++ T E+A+LT L+PR + + ++ LQ GS+LS
Sbjct: 82 STAERKRRPRGDTKSVEMTLH---LQQTFETAILTKLYPRCQIDIFVEVLQADGSILSVA 138
Query: 110 INAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
INAA +AL+++GI +R Y+ A + + ND +LD N ++
Sbjct: 139 INAATMALVDAGIGLRDYVCACSAGVFNDA--ALLDLNNLE 177
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 17/145 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFR-- 57
+ +R+LK ++ +++R+DGS +F G T V+A++YGP V+ K Q+ ++A V +R
Sbjct: 18 NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMA 77
Query: 58 ----------PKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
PK + L VI+ T E+++LT L PR+ + + +Q LQ G S
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMPRSQIDIYVQVLQADGGTRS 134
Query: 108 CCINAACLALINSGISMRYILAAVS 132
CINAA LAL ++GI MR I+ + S
Sbjct: 135 ACINAATLALADAGIPMRDIVTSCS 159
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R+L++Q+ +S++DGS +F G T V+A++YGP E + + + IID+A V + +
Sbjct: 19 MRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALVRCEY---TMA 75
Query: 63 SF-VQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F DR+++ VI+ T E +LT L PR+ + + +Q LQ G S CI
Sbjct: 76 NFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQSN 151
NAA LAL ++GI MR ++ SC N +LD N ++ +
Sbjct: 136 NAATLALADAGIPMRDLV--TSCSAGYLNSTPLLDLNYVEDS 175
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKS 60
+ LR + Q+ + +R+DGS + QG T ++A++YGP E + ++I D+A V+ F S
Sbjct: 20 NELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIVKCEF-ATS 78
Query: 61 GLSFVQDRLKE------------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S + + ++ +++K ES + T L+PR+ + + IQ LQ G L +
Sbjct: 79 SFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQSDGGLKAA 138
Query: 109 CINAACLALINSGISMRYILAAV--SCIINDKNEVILDANQIQ 149
INA+ LALI++GISM+ + AV SCI +LD N I+
Sbjct: 139 AINASTLALIDAGISMKDFVCAVSTSCI---DGVAVLDLNHIE 178
>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
Length = 222
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I ST +A+ L P T++ +T+ +QD GS+ + IN AC AL+++G+
Sbjct: 65 --KFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ V I+ K+E+I+D Q
Sbjct: 123 FETVFCGV-LIVRVKDELIIDPTAKQ 147
>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
Length = 214
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDGHASKANEEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I+ST A+ L P T++ +TI +QD GS+ + IN AC AL+++G+
Sbjct: 65 --KFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ V ++ K+E+I+D Q
Sbjct: 123 FEAVFCGV-LVVRLKDELIIDPTTKQ 147
>gi|17531759|ref|NP_496284.1| Protein CRN-5 [Caenorhabditis elegans]
gi|3874232|emb|CAA90109.1| Protein CRN-5 [Caenorhabditis elegans]
gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
Length = 214
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I ST +A+ L P T++ +T+ +QD GS+ + IN AC AL+++G+
Sbjct: 65 --KFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ V I+ K+E+I+D Q
Sbjct: 123 FETVFCGV-LIVRVKDELIIDPTAKQ 147
>gi|341888955|gb|EGT44890.1| hypothetical protein CAEBREN_12233 [Caenorhabditis brenneri]
Length = 214
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+RE++ +L+ L +DGS FSQG T V AS GP + + + ++++ +R G +
Sbjct: 5 IREMRCELSFLKNADGSACFSQGSTCVWASCSGPGDVHASRANEEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I+ST A+ L P T++ +TI +QD GS+ + IN+AC AL+++G+
Sbjct: 65 --KFNVLNNIIQSTMSKAINLELFPHTAITVTIHGIQDDGSMGAAAINSACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ + I+ K+E+I+D Q
Sbjct: 123 FETVFCGIQ-IVRVKDELIIDPTAKQ 147
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 17/145 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFR-- 57
+ +R+LK ++ I++R+DGS +F G T V+A++YGP V+ K Q+ ++A V +R
Sbjct: 18 NEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMA 77
Query: 58 ----------PKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
PK + L VI+ T E+++LT L P + + + +Q LQ G S
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134
Query: 108 CCINAACLALINSGISMRYILAAVS 132
CINAA LAL ++GI MR I+ + S
Sbjct: 135 ACINAATLALADAGIPMRDIVTSCS 159
>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
Length = 214
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I+ST A+ L P T +++TI +QD GS+ + +N AC AL+++G+
Sbjct: 65 --KFSVLNNIIQSTLAKAINLELFPHTGLVVTIHGIQDDGSMGAVSLNGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ V I+ K+E+I+D Q
Sbjct: 123 FETVFCGV-LIVRVKDELIIDPTAKQ 147
>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
Length = 214
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I+ST A+ L P T++ +TI +QD GS+ + IN AC AL+++G+
Sbjct: 65 --KFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ V ++ K+E+I+D Q
Sbjct: 123 FEAVFCGV-LVVRVKDELIIDPTAKQ 147
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFRPK 59
+ +R+LK ++ +++R+DGS +F G T V+A++YGP V+ K Q+ A V +R
Sbjct: 18 NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDALVRCEYR-M 76
Query: 60 SGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ S R K VI+ T E+++LT L PR+ + + +Q LQ G + C
Sbjct: 77 ADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADGGTRAAC 136
Query: 110 INAACLALINSGISMRYILAAVS 132
INAA LAL ++GI MR I+ + S
Sbjct: 137 INAATLALADAGIPMRDIVTSCS 159
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ---KTIIDKASVEVIF---- 56
LR ++ + + +++DGS QG T V+A++YGP EA + +DK + F
Sbjct: 22 LRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCFINCEFSQAM 81
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
R K + + + IK T E+A+ T L+PR+ + + +Q L GSL C+N
Sbjct: 82 FSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSDGSLYCACVN 141
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LALI++GI+M+ + A S + K ++D N ++
Sbjct: 142 AATLALIDAGIAMKDYVCACSASLT-KETSLIDINHVE 178
>gi|363748182|ref|XP_003644309.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887941|gb|AET37492.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
Length = 220
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
+++L DGS + T ++ S+ GP+E K ++ I ++E+IFRP SG S +++L
Sbjct: 3 ISVLEHVDGSSQYWTPTTSLICSVSGPIEPKARQEIPQHLAIEIIFRPASGPSTTREKLL 62
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL----LSCCINAACLALINSGISMRY 126
E I++ + T LHPR +T Q L+ G L+ INAA LALI++GI ++
Sbjct: 63 EERIRAAVTPMVETFLHPRQLCQITFQALKSVGQYSHMELNSAINAAFLALIDAGIPLKS 122
Query: 127 ILAAVSCIINDKNEVIL--DANQIQS 150
+ +V+ +++ + D N++Q+
Sbjct: 123 VFTSVTVSVDEDGRKFVNPDVNRLQT 148
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 17/159 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-------------KIQKTIIDKA 50
LRE+++++ +S+++GS +F G T V+A++YGP E + + T+ + +
Sbjct: 19 LREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFS 78
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + + +PK + L VI+ T E +LT L PR+ + + +Q LQ G S CI
Sbjct: 79 TGDRMRKPKGDRRSTEISL---VIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
NAA LAL ++GI MR I+ + S + N +LD N ++
Sbjct: 136 NAATLALADAGIPMRDIVTSCSAGYLNSN-ALLDLNYVE 173
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 19/146 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFR-- 57
+ +R+LK ++ +++R+DGS +F G T V+A++YGP V+ K Q+ +A V +R
Sbjct: 18 NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMA 77
Query: 58 ----------PKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
PK + L VI+ T E+++LT L P + + + +Q LQ G S
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
CINAA LAL ++GI MR I A SC
Sbjct: 135 ACINAATLALADAGIPMRDI--ATSC 158
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R+LK ++ ++SR+DGS +F G T V+A++YGP E + + ++ V +
Sbjct: 18 NEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQQVNSKEALVRCEYRMA 77
Query: 62 LSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR ++ VI+ T E+++LT L P + + + +Q LQ G S CI
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIFVQVLQADGGTRSACI 137
Query: 111 NAACLALINSGISMRYILAAVSC 133
NAA LAL ++GI MR I+ + S
Sbjct: 138 NAATLALADAGIPMRDIVTSCSA 160
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 16/134 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R+L +QL ++ ++DGS IF G T V+A++YGP E + + + + D+A V + S
Sbjct: 19 MRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALVRCEY---SMA 75
Query: 63 SF-VQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F DR + S VI+ T E+ +LT L PRT + + +Q LQ G S CI
Sbjct: 76 NFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISM 124
NAA LAL ++GI M
Sbjct: 136 NAATLALADAGIPM 149
>gi|71018123|ref|XP_759292.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
gi|46099142|gb|EAK84375.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
Length = 332
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 35/168 (20%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L ++ IL+RSD S FS G VVAS+ GP E +I+ + D+A+++VI++P+ G+
Sbjct: 21 ALRSLSAEFGILARSDASASFSFGPVNVVASVSGPTEVRIRDELTDRATLDVIYQPQHGV 80
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL------QDQGSLL---------- 106
+ + R + + S LL HPR+ + L +Q L Q G L
Sbjct: 81 AGIPARAVSDALTTAFSSVLLLHHHPRSLIQLVLQTLSSPSLPQSAGQPLQTDTGDNHRH 140
Query: 107 -------------------SCCINAACLALINSGISMRYILAAVSCII 135
+ INAA LAL+++GI R +AA +C I
Sbjct: 141 VPRQPLLLGPDVPPSATEQAALINAASLALLDAGIPARASVAACACAI 188
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 36/168 (21%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ------------------ 43
+ +R+LK ++ +++R+DGS +F G T V+A++YGP E
Sbjct: 18 NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLISKKAKREGL 77
Query: 44 ----KTIIDKASVEVIF-----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHP 88
+T + K++ ++++ +PK + L VI+ T E+++LT L P
Sbjct: 78 RGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMP 134
Query: 89 RTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIIN 136
R+ + + +Q LQ G + CINAA LAL ++GI MR I+ + S +N
Sbjct: 135 RSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSADLN 182
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 18/146 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF------- 56
LR++++++ + +++DGS QG T +A +YGP EAK ++ D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRR---DRALVNCQYSSATFST 78
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C+N
Sbjct: 79 GERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 135
Query: 112 AACLALINSGISMRYILAAVSCIIND 137
AA LA++++GI MR + A S D
Sbjct: 136 AATLAVLDAGIPMRDFVCACSAGFVD 161
>gi|449303034|gb|EMC99042.1| hypothetical protein BAUCODRAFT_41389, partial [Baudoinia
compniacensis UAMH 10762]
Length = 198
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 10/138 (7%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
LSR+DGSV FS ++A++ GPVE + + + ++A++EV RP +G+ ++R ESV
Sbjct: 10 LSRADGSVSFSNNLYTILAAVNGPVEVQRRDELPEEAAIEVNIRPVAGVGGPRERWLESV 69
Query: 74 IKSTCESALLTMLHPRTSVILTIQ--ELQDQG--------SLLSCCINAACLALINSGIS 123
+ + S LL +HPRT + +T+Q +L Q S+L +NAA LAL + G+
Sbjct: 70 VTAVLRSVLLVHMHPRTLIQITLQITKLPTQKLRGAWKDVSVLPALVNAAFLALADGGLP 129
Query: 124 MRYILAAVSCIINDKNEV 141
M+ + A I++ E+
Sbjct: 130 MQSTVTAELFTISEDGEI 147
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ----KTIIDKASVEVIFRPK 59
LR++++++ + +++DGS QG T +A +YGP EA I+ + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGSRARALPDRALVNCQYSSA 81
Query: 60 SGLSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + + R KS T E+A+LT LHPR+ + + +Q LQ G + C+
Sbjct: 82 TFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV 141
Query: 111 NAACLALINSGISMRYILAAVSCIIND 137
NAA LA++++GI MR + A S D
Sbjct: 142 NAATLAVLDAGIPMRDFVCACSAGFVD 168
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ----KTIIDKASVEVIFRPK 59
LR++++++ + +++DGS QG T +A +YGP EA I+ + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGSRARALPDRALVNCQYSSA 81
Query: 60 SGLSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + + R KS T E+A+LT LHPR+ + + +Q LQ G + C+
Sbjct: 82 TFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV 141
Query: 111 NAACLALINSGISMRYILAAVSCIIND 137
NAA LA++++GI MR + A S D
Sbjct: 142 NAATLAVLDAGIPMRDFVCACSAGFVD 168
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 19/146 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFR-- 57
+ +R+LK ++ ++ R+DGS +F G T V+A++YGP V+ K Q+ +A V +R
Sbjct: 18 NEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMA 77
Query: 58 ----------PKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
PK + L VI+ T E+++LT L P + + + +Q LQ G S
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
CINAA LAL ++GI MR I A SC
Sbjct: 135 ACINAATLALADAGIPMRDI--ATSC 158
>gi|367001256|ref|XP_003685363.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
gi|357523661|emb|CCE62929.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
Length = 222
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L+ DGS T V+ S+ GP+E K ++ + + ++EVI RP G+S +++L E
Sbjct: 9 VLTHVDGSSQVEWNDTKVLCSVTGPIEPKARQELPSQLALEVIIRPAKGVSSTREKLMED 68
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGS-------LLSCCINAACLALINSGISMR 125
++S + +PR +T Q L+ S LSCCINAA LALI++GI+++
Sbjct: 69 KLRSVLTPIITLYQYPRQLCQITCQILESGESEYEFSEKELSCCINAAFLALIDAGIALK 128
Query: 126 YILAAVSCIINDKNEVILDANQIQ 149
++++S +I+ NEVI++ Q
Sbjct: 129 STVSSISLVISQNNEVIVNPTGAQ 152
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 25/163 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIF------ 56
LR++ ++ I S++DGS QG T V+AS+YGP E + KT+ D + F
Sbjct: 22 LRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLINCQFSMATFS 81
Query: 57 ------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
RPK DR + ++ T +A++T L+PR+ + + +Q +Q G +++
Sbjct: 82 MSERKNRPKG------DRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQSDGGVIA 135
Query: 108 CCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
CIN A LALI++G+ M+ ++ A S + +KN + D N ++
Sbjct: 136 ACINVATLALIDAGVPMKDFVCACTSSYVQEKN--LTDINHLE 176
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LREL + S +DGS F GQT V S++G ++ + D++++EV FR G
Sbjct: 19 NQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEVSFRGVGG 78
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
V D E+ ++ + AL PR+ + +QD G +L+ +A CLAL+++G
Sbjct: 79 QRKVTDAAAENFLRECVDCALQVHEQPRSQCAVAAHVVQDDGGVLAALASATCLALLDAG 138
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ M + VS + K +LD + ++
Sbjct: 139 LPMTNVFVGVSSAFDAKGGFLLDPSATEA 167
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 21/164 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIF---- 56
+ LR + ++ I R+DGS + QG T ++A++YGP E + K + D+A V+ F
Sbjct: 20 NELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVVKCEFSSSS 79
Query: 57 ------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+P+ DR+ + +K ES + T L+PR+ + + +Q LQ G L +
Sbjct: 80 FSTTERKPQQKTK--GDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQSDGGLKA 137
Query: 108 CCINAACLALINSGISMRYILAA--VSCIINDKNEVILDANQIQ 149
INA+ LALI++GISM+ + A SCI +LD N I+
Sbjct: 138 AAINASTLALIDAGISMKDFICACSTSCI---DGIAVLDLNNIE 178
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 83/149 (55%), Gaps = 18/149 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ--KTIIDKA----------- 50
LR++++++ + +++DGS QG T +A +YGP E ++ KT+ D+A
Sbjct: 22 LRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVINCQYSMATF 81
Query: 51 -SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ E RP + L +K T E+A+LT L+PR+ + + ++ LQ G S C
Sbjct: 82 STAERKRRPHGDRKSTEMSLH---LKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSAC 138
Query: 110 INAACLALINSGISMR-YILAAVSCIIND 137
+NAA LA+I++GI MR Y+ A + +++
Sbjct: 139 VNAATLAVIDAGIPMRDYVCACTAGFVDE 167
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
LR++++++ + +++DGS QG T +A +YGP EA + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRARALPDRALVNCQYSSATFS 81
Query: 63 SFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NAA
Sbjct: 82 TGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAA 141
Query: 114 CLALINSGISMRYILAAVSCIIND 137
LA++++GI MR + A S D
Sbjct: 142 TLAVLDAGIPMRDFVCACSAGFVD 165
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK---IQKTIIDKASVEVIFRP 58
+ LR S+ L R+DGS S G + V+AS+YGP +A+ +KT DKA+++V F+
Sbjct: 15 NELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARNWRAEKT--DKATLDVCFKL 72
Query: 59 KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL-------LSCCIN 111
+ G++ ++R E +I+ T +LT PR + + +Q ++D GS+ + IN
Sbjct: 73 EKGITTSKEREYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDNGSISFPLFSYYAFAIN 132
Query: 112 AACLALINSGISMRYILAAVS 132
A LAL+++G+ M ++ A S
Sbjct: 133 AVSLALMDAGVPMLSVVTATS 153
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDK------------ 49
LR+++ ++ + ++DGS QG T V+A++YGP E K + DK
Sbjct: 22 LRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLLNCQYSMATF 81
Query: 50 ASVEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
++ E RPK DR + + ++ T ++A+LT L+PR+ + + +Q LQ G
Sbjct: 82 STGERKTRPKG------DRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSDGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
C+NAA LA+I++GI MR Y+ A S ++ D
Sbjct: 136 CACVNAATLAVIDAGIPMRDYVCACTSSLLED 167
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 21/165 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKS 60
+ LR +++++ + ++DGS QG T ++A++YGP E ++ K + D+A + +R S
Sbjct: 22 NELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVAS 81
Query: 61 GLSFVQDRLKESV------------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F K+ V ++ E A++T L+PR+ + + +Q LQ G +
Sbjct: 82 ---FATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAV 138
Query: 109 CINAACLALINSGISMRYILAA--VSCIINDKNEVILDANQIQSN 151
CINAA LAL+++GI+M+ + A V CI + +LD N I+ +
Sbjct: 139 CINAATLALMDAGIAMKDFVCACSVGCI---DDTPLLDINYIEDS 180
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKS-G 61
LR+L L+ +DGS + S G T V+ S++GP EAK++ T D+A++ V S
Sbjct: 26 LRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANINVEVTVASFS 85
Query: 62 LSFVQDRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ RLK + IKST E + T L+PR+ + + IQ LQ G L CIN
Sbjct: 86 TGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDGGTLQTCINGT 145
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALIN+GI M + A+S ++ + +LD ++ N
Sbjct: 146 TLALINAGIPMSDFVCAISGGVHSTSP-MLDLTTLEEN 182
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 16/134 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R++++++ +S++DGS IF G T V+A++YGP E + + + + DKA V + S
Sbjct: 19 MRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDKALVRCEY---SMA 75
Query: 63 SF-VQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F DR+++ VI+ T E +LT L PR+ + + +Q LQ G S CI
Sbjct: 76 NFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISM 124
NAA LAL ++GI M
Sbjct: 136 NAATLALADAGIPM 149
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-------------KIQKTIIDKA 50
+R++++++ +S++DGS IF G T V+A++YGP E + + ++ + +
Sbjct: 19 MRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFS 78
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + + +PK + L VI+ T E+ +LT L PR+ + + +Q LQ G S CI
Sbjct: 79 TGDRMRKPKGDRRSTEISL---VIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
NAA LAL ++GI MR ++ SC N +LD N ++
Sbjct: 136 NAATLALADAGIPMRDLV--TSCSAGYLNSTPLLDLNYVE 173
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR----- 57
LRE+ L +DGS I + G T V+ S++GP EAK++ +TI D+A++ V
Sbjct: 23 LREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQTIHDRANINVDVNVAAFS 82
Query: 58 --PKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ S R+ E S +KST E + T L+PR+ + + + LQ G LL CIN
Sbjct: 83 AGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVYVTVLQQDGGLLQTCINGT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALIN+GI M + AV+ ++ + +LD ++ N
Sbjct: 143 TLALINAGIPMLDFVCAVTGGVHSTSP-LLDLTTLEEN 179
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R++++++ +S++DGS IF G T V+A++YGP E + + I S + R + ++
Sbjct: 19 MRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQI---SSHALVRCEYCMA 75
Query: 64 FVQ--DRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR+++S VI+ T E+ +LT L PR+ + + +Q LQ G S CI
Sbjct: 76 NFSTGDRMRKSKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
NAA LAL ++GI MR ++ SC N +LD N ++
Sbjct: 136 NAATLALADAGIPMRDLV--TSCSAGYLNSTPLLDLNYVE 173
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D N + D + ++
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD-NTALADLSHVE 177
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R++++++ +S++DGS IF G T V+A++YGP E + + I S + R + ++
Sbjct: 19 MRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQI---SSHALVRCEYSMA 75
Query: 64 FVQ--DRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR+++ VI+ T E+ +LT L PR+ + + +Q LQ G S CI
Sbjct: 76 NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
NAA LAL ++GI MR ++ SC N +LD N ++
Sbjct: 136 NAATLALADAGIPMRDLV--TSCSAGYLNSTPLLDLNYVE 173
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFRP 58
+ +R++ +++ ++S++DGS +F G T V+A++YGP ++ K Q+ D A V+
Sbjct: 16 FNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA---VVLCE 72
Query: 59 KSGLSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
S F DR ++ VI+ T E+ +LT L P + + + +Q LQ G S
Sbjct: 73 YSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS 132
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQSN 151
CINAA LAL ++GI MR + AVSC N +LD N ++ +
Sbjct: 133 ACINAATLALADAGIPMRDL--AVSCSAGYLNSTPLLDLNYVEDS 175
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 19/163 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFRP 58
+ +R++ +++ ++S++DGS +F G T V+A++YGP ++ K Q+ D A V+
Sbjct: 16 FNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA---VVLCE 72
Query: 59 KSGLSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
S F DR ++ VI+ T E+ +LT L P + + + +Q LQ G S
Sbjct: 73 YSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS 132
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
CINAA LAL ++GI MR + AVSC N +LD N ++
Sbjct: 133 ACINAATLALADAGIPMRDL--AVSCSAGYLNSTPLLDLNYVE 173
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 18/153 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI--------QKTIID----KAS 51
R+++ +L + +DGS I QG T V+A+++GP + +K I+D +A+
Sbjct: 19 FRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAA 78
Query: 52 VEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
R + D+ + + +K T E+ +LT L+PR+++ + ++ LQ G +
Sbjct: 79 FASAERKRRARG---DKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQADGGDYAV 135
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEV 141
C+NAA LALI++GI +R + AVSC + K+ V
Sbjct: 136 CVNAATLALIDAGIPIRDVCCAVSCGVAIKDNV 168
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 18/153 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI--------QKTIID----KAS 51
R+++ +L + +DGS I QG T V+A+++GP + +K I+D +A+
Sbjct: 19 FRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAA 78
Query: 52 VEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
R + D+ + + +K T E+ +LT L+PR+++ + ++ LQ G +
Sbjct: 79 FASAERKRRARG---DKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQADGGDYAV 135
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEV 141
C+NAA LALI++GI +R + AVSC + K+ V
Sbjct: 136 CVNAATLALIDAGIPIRDVCCAVSCGVAIKDNV 168
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 18/149 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKA----------- 50
LR++++++ + +++DGS QG T +A +YGP E + KT+ D+A
Sbjct: 22 LRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATF 81
Query: 51 -SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ E RP + L +K T E+A+LT L+PR+ + + ++ LQ G S C
Sbjct: 82 STAERKRRPHGDRKSTEMSLH---LKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSAC 138
Query: 110 INAACLALINSGISMR-YILAAVSCIIND 137
+NAA LA++++GI MR Y+ A + +++
Sbjct: 139 VNAATLAVVDAGIPMRDYVCACTAGFVDE 167
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIF------ 56
+R+L++Q+ ++++DGS +F G T V+A++YGP E + + + I D+A V +
Sbjct: 19 MRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVRCEYSMANFS 78
Query: 57 ------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+PK + L VI+ E +LT L PR+ + + +Q LQ G S CI
Sbjct: 79 TGDRRRKPKGDRRSTEISL---VIRQAMEECILTNLMPRSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSC 133
NAA LAL ++GI MR ++ + S
Sbjct: 136 NAATLALADAGIPMRDLVTSCSA 158
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPKSGL 62
LR L +++ + + +DGS G T VA++YGP E+KIQ + D+A + V + S
Sbjct: 34 LRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVINVEYNVAS-F 92
Query: 63 SFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
S + +LK S+IK T E ++T PR+ + + +Q LQ G L INA
Sbjct: 93 SSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLDGGALHAAINA 152
Query: 113 ACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
CLA+I++GI M Y++A + N +LD N I+
Sbjct: 153 TCLAMIDAGIPMSDYVIACSAGFSN--GSALLDLNYIE 188
>gi|398412181|ref|XP_003857419.1| hypothetical protein MYCGRDRAFT_30576, partial [Zymoseptoria
tritici IPO323]
gi|339477304|gb|EGP92395.1| hypothetical protein MYCGRDRAFT_30576 [Zymoseptoria tritici IPO323]
Length = 202
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L+R+DGS FS VVA + GPVE + + + ++A++EV RP SG+ ++R E+V
Sbjct: 1 LARADGSTAFSSDLYTVVAGVNGPVEVQRRDELPEEAAIEVNLRPISGVGGPRERWLETV 60
Query: 74 IKSTCESALLTMLHPRTSVILTIQ-------ELQDQG---SLLSCCINAACLALINSGIS 123
+ + +S LL +HPRT + +T+Q + Q S++ +NAA AL++ G+
Sbjct: 61 LHAVLKSVLLVNMHPRTLIQITLQVTHEPILKWQRTATDISIIPTLLNAAFAALVDGGLP 120
Query: 124 MRYILAAVSCIINDKNEVILDANQIQ 149
+ AA II + EVI+D + Q
Sbjct: 121 LAATTAAALAIIREDGEVIIDPQEKQ 146
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 19/162 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R+++ ++ ++++DGS F G T V+A++YGP E + + + I D+A V + +
Sbjct: 19 MRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALVRCEY---TMA 75
Query: 63 SF-VQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F DR+++ VI+ T E+ +LT L PR+ + + +Q LQ G S CI
Sbjct: 76 NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQSN 151
NAA LAL ++GI MR ++ SC N +LD N ++ +
Sbjct: 136 NAATLALADAGIPMRDLV--TSCSAGYLNSTPLLDLNYVEDS 175
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 74/124 (59%), Gaps = 25/124 (20%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-------KIQKTIIDKASVEVIF 56
LR +++++ ++S++DGS +F QG T V+A++YGP EA K +KT DK +VE+
Sbjct: 22 LRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKEAGFASGERKSKKT--DKKTVEL-- 77
Query: 57 RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLA 116
G+ +I+ T ES ++T L+PR+ + + +Q LQ G LS INA LA
Sbjct: 78 ----GM----------LIRQTFESVVMTALYPRSQIDIYVQVLQSDGGALSAAINATTLA 123
Query: 117 LINS 120
+I++
Sbjct: 124 MIDA 127
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 120 LRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 179
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R + KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 180 STGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 239
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 240 ATLAVLDAGIPMRDFVCACSAGFVD 264
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFR--P 58
+ LR + L S +DGS QGQT V+A ++GP E + + DK +E F P
Sbjct: 22 NELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTP 81
Query: 59 KSGLSFVQDRLKESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
SG + R + +K T E+A++ L+PRT V + + LQ GS+L IN
Sbjct: 82 FSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAIN 141
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVI 142
A LAL+++G++M+ ++ A S + DK V+
Sbjct: 142 AVSLALVDAGVAMKEMVTACSVALLDKQPVL 172
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + S
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQY---SS 78
Query: 62 LSFVQDRLKESV------------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+F K ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 79 ATFSTGERKRRAHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>gi|401842317|gb|EJT44550.1| RRP46-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 223
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 8/144 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ +L DGS F T ++ S+ GP+EAK ++ + + ++E+I RP G++ +
Sbjct: 3 VRAEIGMLDNVDGSSQFVSQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPR-----TSVILTIQELQDQGSL--LSCCINAACLALIN 119
++L E +++ + +PR T IL E + + SL LSCCINAA L L++
Sbjct: 63 EKLLEDKLRAVLTPLIARYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVD 122
Query: 120 SGISMRYILAAVS-CIINDKNEVI 142
+GI+M + A++ I+ D NE+I
Sbjct: 123 AGIAMNSMCASIPIAIMKDSNEII 146
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V +
Sbjct: 48 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 107
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 108 STGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 164
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 165 VNAATLAVMDAGIPMRDFVCACSAGFVD 192
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKA----------- 50
LR++++++++ +++DGS QG T +A +YGP E + K++ D+A
Sbjct: 22 LRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATF 81
Query: 51 -SVEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ E RP DR + +K T E+A+LT L+PR+ + + ++ LQ G
Sbjct: 82 STAERKRRPHG------DRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
S C+NAA LAL+++GI MR Y+ A + + D
Sbjct: 136 SACVNAATLALVDAGIPMRDYVCACSAGFVED 167
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKA----------- 50
LR+L++++ + +++DGS QG T +A +YGP E + +T+ D+A
Sbjct: 22 LRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRSRTLHDRAVINCQYSMATF 81
Query: 51 -SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ E RP + L +K T E+A++T L+PR+ + + ++ LQ G S C
Sbjct: 82 STAERKRRPHGDRKSTEMSLH---LKQTFEAAVMTQLYPRSQIDIYVKILQSDGGNYSVC 138
Query: 110 INAACLALINSGISMR-YILAAVSCIIND 137
+NAA LA+I++GI MR Y+ A +++
Sbjct: 139 VNAATLAVIDAGIPMRDYVCACTVGFVDE 167
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 26 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 85
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 86 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 145
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 146 ATLAVLDAGIPMRDFVCACSAGFVD 170
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----DKASVEV-- 54
+ LR L +Q+ + +DGS G T V+ ++ GP E K + D+A+V+V
Sbjct: 20 WNELRRLTAQMRTQAAADGSSYLEMGNTKVICTVAGPSEGKAGTGQMGGARDRATVDVTI 79
Query: 55 -------IFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
+ R + G RL E + I + LLT L+P +S+ L++ L GSL
Sbjct: 80 SVAGFSGVDRKRGGAGRGDKRLAEMQTTISTAFAQTLLTHLYPHSSIALSLHILSQDGSL 139
Query: 106 LSCCINAACLALINSGISMR-YILA 129
L+ CINA+ LAL+++GI MR YI A
Sbjct: 140 LAACINASTLALVDAGIPMRGYICA 164
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 9/157 (5%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
D +R +K Q+ +L+ +DGS + G T V+A++YGP E++ + D+A++ V +
Sbjct: 24 DEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQKSMLLPDRATLRVRYHMAPF 83
Query: 58 ---PKSGLSFVQDRLKES-VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + + L+ S V++ + E ++T PRTS+ + I+ LQ G + AA
Sbjct: 84 STEERKNPAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIEVLQSDGGTRTVGATAA 143
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
LAL ++GI MR ++A V+ D N +I+D N+++
Sbjct: 144 SLALADAGIPMRALVAGVAIGKVD-NVLIVDLNEVED 179
>gi|401625679|gb|EJS43677.1| rrp46p [Saccharomyces arboricola H-6]
Length = 223
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
++++ IL DGS F T ++ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 3 FQAEMGILDHVDGSSQFVSQDTKIICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPR-----TSVILTIQELQDQGSL--LSCCINAACLALIN 119
++L E +++ + +PR T IL E + + SL LSCCINAA L L++
Sbjct: 63 EKLLEDKLRAVLTPIITRYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVD 122
Query: 120 SGISMRYILAAVS-CIINDKNEVILDANQIQ 149
+GI+M + A++ I+ + NE+I++ Q
Sbjct: 123 AGIAMNSMCASIPIAIMKNSNEIIINPTAEQ 153
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASV--EVIFRPKSGLSFVQDRLKE-- 71
+DGS +QG T V A+++GP EA+ +I D+ASV EV P + +
Sbjct: 37 ADGSAQITQGLTTVSATVFGPREARTGANMIHDRASVNVEVCLAPWGSTERRRRNRGDRR 96
Query: 72 -----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
S IKST E + T L+PR+ + + +Q Q G +L INAA LAL+++GI+M+
Sbjct: 97 LLEFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINAATLALLDAGIAMQD 156
Query: 127 ILAAVSCIIN 136
+A+VSC I+
Sbjct: 157 FVASVSCGIH 166
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 26/172 (15%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPKS 60
+ LR++ S+ L R+DGS + G T V+ ++YGP +AKI + ++DKA+++V R
Sbjct: 13 NELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDKAAIDVCVRLNQ 72
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS---------------- 104
G++ +++ E +++ E + PRT + + IQ ++D GS
Sbjct: 73 GIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIEDAGSISSLLTSHTIGFGSCV 132
Query: 105 ---------LLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
L+S INA +AL+++ I+M ++ + +C + + V+LD +Q
Sbjct: 133 EFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTCCLTEDGSVLLDPSQ 184
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 28 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 84
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 85 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 143
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ AA LAL ++GI MR ++A V+ D +ILD N+ ++
Sbjct: 144 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETEA 184
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + K + D++ V +
Sbjct: 22 LRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVVNCQYSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP DR + +K T E+A+LT L+PR+ + + +Q LQ G
Sbjct: 82 STGERKRRPHG------DRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
C+NAA LA+I++GI MR Y+ A+ + I D
Sbjct: 136 CTCVNAATLAVIDAGIPMRDYVCASSAGFIED 167
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 26 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 82
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 83 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 141
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D +ILD N+ +
Sbjct: 142 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETE 181
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D +ILD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETE 178
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSGL 62
R++ +L + S++DGS QG V+A++YGP E + ++ + D+ V F +
Sbjct: 23 RKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFS 82
Query: 63 SFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+F + R KS T E+ +LT L+PR+ + + ++ LQ G LS C+NAA
Sbjct: 83 TFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAA 142
Query: 114 CLALINSGISMRYILAAVS 132
LALI++GI+++ + A S
Sbjct: 143 TLALIDAGIALKDYVCACS 161
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSGL 62
R++ +L + S++DGS QG V+A++YGP E + ++ + D+ V F +
Sbjct: 23 RKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFS 82
Query: 63 SFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+F + R KS T E+ +LT L+PR+ + + ++ LQ G LS C+NAA
Sbjct: 83 TFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAA 142
Query: 114 CLALINSGISMRYILAAVS 132
LALI++GI+++ + A S
Sbjct: 143 TLALIDAGIALKDYVCACS 161
>gi|448262636|pdb|4IFD|D Chain D, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 245
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 25 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 84
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL----LSCCINAACLALIN 119
+++ E +++ + +PR +T Q L +D+ LSCCINAA LAL++
Sbjct: 85 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVD 144
Query: 120 SGISMRYILAAVS-CIINDKNEVILDANQIQ 149
+GI++ + A++ II D +++I+D Q
Sbjct: 145 AGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 175
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 28/159 (17%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-------------QKTIIDKA 50
LR++++++ + +++DGS QG T +A +YGP EA + + + D+A
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLVYLSFLFQIRGSRSRALPDRA 81
Query: 51 SVEVIF------------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE 98
V + RP + L+ ++ T E+A+LT LHPR+ + + +Q
Sbjct: 82 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQV 138
Query: 99 LQDQGSLLSCCINAACLALINSGISMRYILAAVSCIIND 137
LQ G + C+NAA LA++++GI MR + A S D
Sbjct: 139 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVD 177
>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
gi|118595829|sp|P53256.2|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
gi|349578307|dbj|GAA23473.1| K7_Rrp46p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765690|gb|EHN07197.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299350|gb|EIW10444.1| Rrp46p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 223
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL----LSCCINAACLALIN 119
+++ E +++ + +PR +T Q L +D+ LSCCINAA LAL++
Sbjct: 63 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVD 122
Query: 120 SGISMRYILAAVS-CIINDKNEVILDANQIQ 149
+GI++ + A++ II D +++I+D Q
Sbjct: 123 AGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 153
>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
Length = 256
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 36 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 95
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL----LSCCINAACLALIN 119
+++ E +++ + +PR +T Q L +D+ LSCCINAA LAL++
Sbjct: 96 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVD 155
Query: 120 SGISMRYILAAVS-CIINDKNEVILDANQIQ 149
+GI++ + A++ II D +++I+D Q
Sbjct: 156 AGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 186
>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
Length = 224
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
IL+ DGS F T VV S+ GP+E K ++ + + ++E+I RP G+ +++L E
Sbjct: 8 GILNHVDGSSEFESHSTKVVCSVTGPIEPKARQELPTQLALEIIVRPAKGVPNTREKLIE 67
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQ-------ELQDQGSLLSCCINAACLALINSGISM 124
++ + L+PR +T Q EL+ LSCCINAA LAL++SGI +
Sbjct: 68 DKLRGVLTPLIARYLYPRRLCQITFQVMEAGEPELEFSQRELSCCINAAVLALVDSGIGL 127
Query: 125 RYILAAVSCIINDKNEVILDANQIQ 149
+ ++V I K ++++D N Q
Sbjct: 128 LAMASSVPLAI-IKGQLVVDPNAQQ 151
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 21/163 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKA--SVEVIFRPKS 60
LR+ L + ++DGS + SQG T V+ +++GP EA+ + I ++A +VEV
Sbjct: 43 LRDFNIDLAVRGQADGSAMVSQGLTQVLVTVFGPREARSPTQRIHNRAFINVEVNI---- 98
Query: 61 GLSF-VQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
SF +R K S IKST E + T L+PR+ + + +Q LQ G LLS
Sbjct: 99 -ASFSTSERRKRSRNDKRVLEFAAAIKSTFEPVIQTHLYPRSEIDIFVQVLQQDGGLLSA 157
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
INA LALI GIS+ + AVS ++ +LD N ++ N
Sbjct: 158 SINATTLALITGGISLYDYVCAVSAGVH-ATHPLLDLNTLEEN 199
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKAS--VEVIFRPKSGLSFVQDRLK--- 70
+DGS + G T V A+++GP EA+ ++ D+AS VEV P + +
Sbjct: 37 ADGSAQITHGLTTVSATVFGPREARSGGNMLHDRASLNVEVALAPWGSMERRRRNRGDRR 96
Query: 71 ----ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
S IKST E + T L+PR+ + + + Q G +L INAA LAL+++GI+M
Sbjct: 97 LVEFASAIKSTFEPVVHTHLYPRSQIDIFVHVHQQDGGVLPAAINAATLALLDAGIAMHD 156
Query: 127 ILAAVSCIIN 136
+AAVSC I+
Sbjct: 157 FVAAVSCGIH 166
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R L +L + S++DGS QG T V+ ++YGP E K + +++ +
Sbjct: 19 IRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFS 78
Query: 53 --EVIFRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
E RP+ L F RL E E+A+LT +PR+ + + + LQ GS L+
Sbjct: 79 TNERKERPRGDRRSLEFA--RLMEKAF----EAAVLTENYPRSQIDVFCELLQADGSHLA 132
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
C+N LAL ++G+ MR ++AA SC +D N
Sbjct: 133 ACVNVGTLALADAGVPMRGLVAAASCACAPNGVACVDVN 171
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R L +L + S++DGS QG T V+ ++YGP E K + +++ +
Sbjct: 19 IRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFS 78
Query: 53 --EVIFRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
E RP+ L F RL E E+A+LT +PR+ + + + LQ GS L+
Sbjct: 79 TNERKERPRGDRRSLEFA--RLMEKAF----EAAILTENYPRSQIDVFCELLQADGSHLA 132
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
C+N LAL ++G+ MR ++AA SC +D N
Sbjct: 133 ACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVN 171
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + D+ V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K + +L R+DGS G+ +VA++YGP E + + D + + +R
Sbjct: 20 FDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVH-PRHLQDPSRAIIRYRYNM 78
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R K V + E +L L PR+ + + ++ LQ + C+
Sbjct: 79 APFSVEERKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQADAGTRTACL 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +ALI++G++MR ++ AV+ + + E++LD + + N
Sbjct: 139 NAASVALIDAGVAMRGMITAVA-VAKVEGEIVLDPMKEEDN 178
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L +L L +DGS ++ G T V+A+++GPV + + KA + +I KSG
Sbjct: 11 TLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISIII--KSGT 68
Query: 63 SF-VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ +R E+ I + L+T +PR+ + + +Q L GS+L +N A AL+++G
Sbjct: 69 TVNTLEREWEAFITKALTACLVTEQYPRSVIQIVLQILSADGSVLGAALNGAVAALMDAG 128
Query: 122 ISMRYILAAVSC 133
I+M+ + AV+C
Sbjct: 129 IAMKVLPVAVTC 140
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEAE 178
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFR--P 58
+ LR ++ ++ +LS +DGS + G T V+A++YGP EA + + D+A + + P
Sbjct: 32 EQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAP 91
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
K+ ++ VI+ E+ +++ L+PRT++ + ++ LQ G + I A
Sbjct: 92 FSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITA 151
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LAL ++GI+MR ++A V+ D ++LD ++I+ N
Sbjct: 152 ASLALADAGIAMRDLVAGVAVGKVD-GVLVLDIDEIEDN 189
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 22/159 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R L +L + S++DGS QG T V+ ++YGP E K + +++ +
Sbjct: 19 IRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFS 78
Query: 53 --EVIFRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
E RP+ L F RL E E A+LT +PR+ + + + LQ GS L+
Sbjct: 79 TNERKERPRGDRRSLEFA--RLMEKAF----EEAILTENYPRSQIDVFCELLQADGSHLA 132
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
C+N LAL ++G+ MR ++AA SC +D N
Sbjct: 133 ACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVN 171
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEPE 178
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEPE 178
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKAS---VEVI 55
+ LR + +Q++ + +DGS QG T ++ S+ GP E + Q+ DK + VE+
Sbjct: 20 WNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAKVEVEIN 79
Query: 56 FRPKSGLSFVQDRLK---------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
F +G S V+ R + E I+S E LL L+P +++ L I + GSLL
Sbjct: 80 F---AGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQDGSLL 136
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ CINA+ LALI++GI M L A
Sbjct: 137 AACINASTLALIDAGIPMTDYLVA 160
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEPE 178
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSAT- 80
Query: 62 LSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
S + + + + +CE +A+LT LHPR+ + + +Q LQ G + + C+N
Sbjct: 81 FSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAACVN 140
Query: 112 AACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 141 VATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|365760630|gb|EHN02338.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L DGS F T ++ S+ GP+EAK ++ + + ++E+I RP G++ +++L E
Sbjct: 1 MLDNVDGSSQFVSQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTREKLLED 60
Query: 73 VIKSTCESALLTMLHPR-----TSVILTIQELQDQGSL--LSCCINAACLALINSGISMR 125
+++ + +PR T IL E + + SL LSCCINAA L L+++GI+M
Sbjct: 61 KLRAVLTPLIARYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMN 120
Query: 126 YILAAVS-CIINDKNEVI 142
+ A++ I+ D NE+I
Sbjct: 121 SMCASIPIAIMKDSNEII 138
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALVNCQYSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT L+PR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKACEMGLQ---LRQTFEAAILTQLYPRSQIDIYVQVLQADGGNYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALVNCQYSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT L+PR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKACEMGLQ---LRQTFEAAILTQLYPRSQIDIYVQVLQADGGNYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKA----------- 50
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A
Sbjct: 22 LRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARSRALHDRAIINCQYSMATF 81
Query: 51 -SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ E RP + L +K T E+A+LT L+PR+ + + ++ LQ G S C
Sbjct: 82 STAERKRRPHGDRKSTEMSLH---LKQTFEAAVLTQLYPRSQIDIYVKILQSDGGNYSVC 138
Query: 110 INAACLALINSGISMR-YILAAVSCIIND 137
+NAA LA+I++GI MR Y+ A +++
Sbjct: 139 VNAATLAVIDAGIPMRDYVCACTVGFVDE 167
>gi|319411528|emb|CBQ73572.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 332
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 35/168 (20%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L + L L+RSD S FS G VVAS+ GP E +I+ + D+A+++VI++P+ G+
Sbjct: 16 ALRPLSADLGTLARSDASASFSFGPVHVVASVSGPTEVRIRDELTDRATLDVIYQPQHGV 75
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ------------------------E 98
+ + + + + + S LL HPR+ + + +Q
Sbjct: 76 AGIPAQAESDSLFTAFSSVLLLHHHPRSLIQVVLQTLSSPSLPQSSAQTLHKDVASSQRH 135
Query: 99 LQDQGSLL-----------SCCINAACLALINSGISMRYILAAVSCII 135
+ Q LL + INAA LAL+++GI R +AA +C I
Sbjct: 136 VPRQPLLLGPDSPPSVSEQAALINAASLALLDAGIPARASVAACACAI 183
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFRPKS 60
+ LR S+ L R+DGS S G + V+A++YGP +A+ + DKA+++V F+ +
Sbjct: 15 NELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEK 74
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS--------LLSCCINA 112
G+ +++ E +I+ T +LT PR + + +Q ++D GS + + INA
Sbjct: 75 GIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINA 134
Query: 113 ACLALINSGISMRYILAAVS 132
LAL+++G+ M ++ A S
Sbjct: 135 VSLALMDAGVPMLSVVTATS 154
>gi|413932390|gb|AFW66941.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
gi|413932391|gb|AFW66942.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 122
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 14 NQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
Q+R E +K T +S L +HP T+ + +Q + D GS+
Sbjct: 74 QIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSV 117
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKAS--VEVIFRPKSGLSFVQDRLKE-- 71
+DGS +QG T+V A+++GP EA+ +I D+AS VEV P + + +
Sbjct: 37 ADGSAQITQGLTIVSATVFGPREARSGANVIHDRASLNVEVSLAPWGSMERRRRNRGDRR 96
Query: 72 -----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
S IKST E + T L+PR+ + + +Q Q G +L INA+ LAL+++ I+M
Sbjct: 97 LLEFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINASTLALLDASIAMHD 156
Query: 127 ILAAVSCIIN 136
+A+VSC I+
Sbjct: 157 FVASVSCGIH 166
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--------------IQKTIIDK 49
LR++++++ + +++DGS QG T +A +YGP E + Q ++
Sbjct: 22 LRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVINCQYSMATF 81
Query: 50 ASVEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
++ E RP DR + +K T E+A+LT L+PR+ + + +Q LQ G
Sbjct: 82 STGERKRRPHG------DRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
C+NAA LA+I++GI MR Y+ A + I D
Sbjct: 136 CTCVNAATLAVIDAGIPMRDYVCACSAGFIED 167
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-------AKIQKTIID-------K 49
LR++++++ + +++DGS QG T V+A +YGP E A+ + +I+
Sbjct: 22 LRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGSRSRARHDRAVINCQYSMATF 81
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
++ E RP + L +K T E+A++T L PR+ + + ++ LQ G S C
Sbjct: 82 STAERKRRPHGDRKSTEMSLH---LKQTFEAAVMTQLFPRSQIDIYVKILQSDGGNYSVC 138
Query: 110 INAACLALINSGISMR-YILAAVSCIIND 137
+NAA LA+I++GI MR Y+ A +++
Sbjct: 139 VNAATLAVIDAGIPMRDYVCACTVGFVDE 167
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKA--SVEVIFRP-- 58
LR L QL +DGS + S G T +A ++GP E +++ T+ D+A V VI P
Sbjct: 21 LRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLRSLTLHDRAVIDVTVIVAPFS 80
Query: 59 ---KSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + R +E + +K+T E A+ T L+PR+ + + I L G +L CINA
Sbjct: 81 QGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQIDICIHVLHQDGGVLQACINAT 140
Query: 114 CLALINSGISMRYILAAVSC 133
LAL+N+G+ M + AVS
Sbjct: 141 TLALMNAGVPMYDYVCAVST 160
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 25/146 (17%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFR-- 57
+ +R+LK ++ +++R+DGS +F G T V+A++YGP V+ K Q+ +A V +R
Sbjct: 18 NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMA 77
Query: 58 ----------PKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
PK + L VI+ T E+++LT L P + + + +Q L+ S
Sbjct: 78 EFSTGDRRRKPKGDRRSTEISL---VIRQTMEASILTHLMPHSQIDIYVQVLR------S 128
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
CINAA LAL ++GI MR I A SC
Sbjct: 129 ACINAATLALADAGIPMRDI--ATSC 152
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 18/165 (10%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQK-------------TI 46
+ LR + ++N + SDGS QG T VV ++ GP+E +++ TI
Sbjct: 16 WNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHANIEINLTI 75
Query: 47 IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ A+ E R K+ ++ LK + K+ ES ++ L+PRT++I+ IQ L G LL
Sbjct: 76 ANFATFERKKRNKNEKRLIE--LKNILEKTFMESIMIN-LYPRTNIIINIQVLSQDGGLL 132
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
S N+ LALI+SGISM +++++C + D +LD N ++ N
Sbjct: 133 SAITNSITLALIDSGISMYDYVSSINCGLYDTTP-LLDLNNLEEN 176
>gi|388854473|emb|CCF51860.1| uncharacterized protein [Ustilago hordei]
Length = 328
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 35/168 (20%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L +QL L+R+D S FS G VVAS+ GP E +I+ + D+A+++VIF+P+ G+
Sbjct: 21 ALRPLSAQLGTLARADASASFSFGPLNVVASVSGPTEVRIRDELTDRATLDVIFQPQHGV 80
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL----------------------- 99
+ + + + + S LL +PR+ + + +Q L
Sbjct: 81 AGIASQAVSDSLFTAFSSVLLLHHYPRSLIQVVLQTLSCPTLPQTSAQVVHSDVQASQRV 140
Query: 100 ---------QDQG---SLLSCCINAACLALINSGISMRYILAAVSCII 135
D+ S L+ INAA LAL+++GI R +AA +C I
Sbjct: 141 VARQPLLLGPDKPPSVSELAALINAASLALLDAGIPARGSVAACACAI 188
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII--DKASVEVIF----- 56
LR++ +++ + +++DGS QG T +A++YGP E + + I D+A V F
Sbjct: 22 LRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVVNCQFSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RPK DR + + ++ T E+ ++T L PR+ + + +Q LQ G
Sbjct: 82 STGERKSRPKG------DRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQADGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
C+NAA LA+I++GI M+ Y+ A + I D
Sbjct: 136 CACVNAATLAVIDAGIPMKDYVCACTAGFIQD 167
>gi|170103316|ref|XP_001882873.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642244|gb|EDR06501.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 247
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 4 LRELKSQLNILSRSDGSVIFSQG-QTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+R L L+R+DGS F G T +AS+ GP+E ++ + +A+ EV RP S +
Sbjct: 1 MRSLHLSYEHLARTDGSARFGFGPNTHALASLSGPIEVRLAAELPSQATFEVHVRPLSNV 60
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSLLSCCINAACLALIN 119
+ + S++KS +L+ +PRT V L +Q L +D +++ INAA LA +N
Sbjct: 61 PATEAKALASIVKSALSPSLILSRNPRTLVQLVVQALSPSRDGSGMVAAMINAATLAFLN 120
Query: 120 SG-ISMRYILAAVSCIINDKNEVILDANQ 147
+G I M+ I+ A+ E+++D ++
Sbjct: 121 AGSIPMKGIICAMPVGRRVGGELVVDPSE 149
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR----- 57
LR++ L+ +DGSV QG T V+ S++GP EA+++ +T+ D+A++ V
Sbjct: 23 LRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEARVRSQTLHDRANLNVEVNVSAFS 82
Query: 58 --PKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ S RL E + I+ST E + T L+PR+ + + +Q +Q G LL CIN
Sbjct: 83 AGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRSQIDVFVQVIQQDGGLLQTCINGT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL ++GI + + AV+ ++ + +LD ++ N
Sbjct: 143 TLALAHAGIPLFDFVCAVTGGVHSSSP-MLDLTTLEEN 179
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
+ LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 23 EELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEPE 178
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR +K +L + + DGS QG T V+A++YGP +AK +T +I+ + F
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER 82
Query: 57 --RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
RP+ ++ +L ++ +A+ + L+PR+ + + ++ LQD G+ + +NAA
Sbjct: 83 KNRPRGDRKSLEFKL---YLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D +Q +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISQFE 174
>gi|409079157|gb|EKM79519.1| hypothetical protein AGABI1DRAFT_114059 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 264
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L+R DGS FS G+T VAS+ GP+E ++ +A+ EVI RP S ++ + + S
Sbjct: 23 LARVDGSARFSFGETSSVASVSGPIEVRLAAEQASQATFEVITRPLSNVAATESKAISSA 82
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQD-----QGSLLSCCINAACLALINSG-ISMRYI 127
+++ +L+ HPRT V L +Q L + L+SC IN++ LAL+N+ + MR +
Sbjct: 83 VRAALIPSLILNKHPRTLVQLVVQALSSPRTRWKQPLISCMINSSSLALLNAASVPMRGV 142
Query: 128 LAAVS 132
+ AV+
Sbjct: 143 VCAVA 147
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 17/144 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKAS---VEVI 55
+ LR + +Q++ + +DGS QG T ++ S+ GP E + Q+ DK + VE+
Sbjct: 20 WNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAKVEVEIN 79
Query: 56 FRPKSGLSFVQDRLK---------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
F +G S V+ R + E I+S E LL L+P + + L I + GSLL
Sbjct: 80 F---AGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQDGSLL 136
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ CINA+ LALI++GI M L A
Sbjct: 137 AACINASTLALIDAGIPMTDYLVA 160
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRP 58
+ LR + ++N + SDGS QG T V+ ++ GP+E ++ + ++A++EV
Sbjct: 16 WNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNI 75
Query: 59 KSGLSFVQD-------RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
S +F + RL E + ++ T E +++ L+PRT++++ +Q L G +L+
Sbjct: 76 ASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAV 135
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN+ LALI++GISM ++ VSC + D+ +LD N ++ +
Sbjct: 136 INSITLALIDAGISMYDYVSGVSCGVYDQTP-LLDVNNLEEH 176
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR++ L+ +DGS + + G T V+A+++GP EA+++ +T+ D+A +VEV P S
Sbjct: 37 LRDITIDLSQQGTADGSALMTHGLTQVLATVFGPREARVRSQTLHDRAVINVEVNVSPFS 96
Query: 61 -GLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G + R V IKST E + T L+PR+ + + + LQ G LL CINA
Sbjct: 97 TGERRRRGRADRRVLELAATIKSTFEPVVQTNLYPRSQIDIFLHVLQQDGGLLHACINAT 156
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL+ +GI + + AVS ++ + +LD ++ N
Sbjct: 157 TLALVTAGIPLLDFVCAVSGGVHSTSP-MLDLTTLEEN 193
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 16/161 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR +++ + + +DGS F QG T VVA + GP + + D V F +
Sbjct: 18 NELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKAG--DAGKVVCDFE-MAA 74
Query: 62 LSFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
S Q R S I ST ESA++T L+PR+ + +++Q LQ G +L+ IN
Sbjct: 75 FSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQADGGVLAVAIN 134
Query: 112 AACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQSN 151
A LAL+++G++M ++ A + +I+ N +LD N +++
Sbjct: 135 AVTLALMDAGVAMTDFVCACTASVIDGTN--VLDINHYEAS 173
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V F
Sbjct: 22 LRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALVNCQFSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP DR + ++ T E A+LT L+PR+ + + +Q LQ G
Sbjct: 82 STGERKRRPHG------DRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQADGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIIND 137
+ C+NAA LA++++GI +R ++ A+ + + D
Sbjct: 136 AACVNAATLAVLDAGIPLRDFVCASSAGFVED 167
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R +L +LSR+DGS QG T +AS+ GP +A K I V + F+
Sbjct: 17 EEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAG-DKAKIKHDRVHINFQYSMA 75
Query: 62 LSFVQDRL------KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+R K S+ ++ +SA+LT L+P++ + + +Q LQ G S CI
Sbjct: 76 TFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQADGGNYSACI 135
Query: 111 NAACLALINSGISMR-YILAAVSCIINDKNEVILDAN 146
NAA LAL+++G+ M+ +I + + +++ K I+D N
Sbjct: 136 NAATLALMDAGVPMKDFICSCTASLVDSK--TIIDVN 170
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR +K +L + + DGS QG T V+A++YGP +AK +T +I+ + F
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER 82
Query: 57 --RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
RP+ ++ +L ++ +A+ + L+PR+ + + ++ LQD G+ + +NAA
Sbjct: 83 KNRPRGDRKSLEFKL---YLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D +Q +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISQFE 174
>gi|452848085|gb|EME50017.1| hypothetical protein DOTSEDRAFT_68766 [Dothistroma septosporum
NZE10]
Length = 240
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L R+DGS IF G V+A+ GPVE + + + ++A++EV RP SG+ ++R E++
Sbjct: 10 LERADGSTIFGDGLYTVIAAANGPVEVQRRDELPEEAAIEVNLRPLSGVGGPRERWLENL 69
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQG----------SLLSCCINAACLALINSGIS 123
++ E LL +HPRT + +T+Q + S++ +NAA AL++ +
Sbjct: 70 LQPLLEKILLVHMHPRTLIQVTLQITKQPTAKFRRSNADISIIPTLVNAAFTALVDGALP 129
Query: 124 MRYILAAV 131
+ + AV
Sbjct: 130 LATTVNAV 137
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR++ L+ +DGS + + G T V+ S++GP EAK++ +T D+A +VEV P S
Sbjct: 23 LRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQTFHDRAVLNVEVNIAPFS 82
Query: 61 -GLSFVQDRLKE------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G ++R + S IKST E + T L+PR+ + + + LQ G LL INA
Sbjct: 83 TGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIYVHVLQQDGGLLQAGINAT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL+++GI + ++ AV+ ++ + +LD ++ N
Sbjct: 143 TLALVSAGIPLLDLVCAVTGGVHSTSP-MLDLTTLEEN 179
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 25/170 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDK---------- 49
+ LR ++++I + +DGS QG T V+ ++GP+E + K +D+
Sbjct: 18 WNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSKVSLDRERITIDISIA 77
Query: 50 --ASVEVIFRPKSGLSFVQDRLKESV--IKSTCESALLTMLHPRTSVILTIQEL-QDQG- 103
+SVE R KS R++E V I+ E A+ T LHPR+ + + IQ L QD G
Sbjct: 78 AFSSVERKKRTKS-----DKRIQEYVACIQKVFEKAIQTGLHPRSEINICIQVLAQDGGM 132
Query: 104 --SLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+L CINA LALIN+GI M Y + S + + + +LD N ++ N
Sbjct: 133 FNRILQTCINAVSLALINAGIPM-YDYVSASTVGSTDTDPLLDLNAVEEN 181
>gi|444321144|ref|XP_004181228.1| hypothetical protein TBLA_0F01670 [Tetrapisispora blattae CBS 6284]
gi|387514272|emb|CCH61709.1| hypothetical protein TBLA_0F01670 [Tetrapisispora blattae CBS 6284]
Length = 225
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
L++++ ILS DGS + T V+ + GP+E K ++ + ++ ++E+I RP +G+S +
Sbjct: 4 LEAKIGILSHVDGSSQLTSQSTNVICGVTGPIEPKPRQELPNELALEIIVRPATGVSNTR 63
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS--------LLSCCINAACLALI 118
++L E ++ + L+PR +T Q L D G L+CCIN++ LALI
Sbjct: 64 EKLLEDRLRGVLTPIINRNLYPRQLCQITCQIL-DSGESDEYFSQKELACCINSSFLALI 122
Query: 119 NSGISMRYILAA-VSCIINDKNEVIL 143
++GI++ +A+ V I+ND E I+
Sbjct: 123 DAGIALNSTVASIVLAIMNDAEETIV 148
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR + ++N + SDGS QG T V+ ++ GP+E + + D+A+VEV
Sbjct: 19 WNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRANVEVNLTI 78
Query: 55 ----IFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F K S + RL E + ++ T E +L L+PRT++ + +Q L G +L+
Sbjct: 79 ANFSTFERKK-RSKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQDGGMLAA 137
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
N+ LAL+++GI+M ++++SC ++D++ +LD N ++ N
Sbjct: 138 VTNSITLALMDAGIAMYDYVSSISCGLHDQSP-LLDLNNLEEN 179
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 20/159 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R++ ++ IL R+DGS G T+V+A++YGP E +++ S +I S S
Sbjct: 22 IRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSRQS-----SCGIIRCEYSMAS 76
Query: 64 FVQ-DRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F DR + S IK T E+ LLT L P++ V + IQ LQ GS S IN
Sbjct: 77 FASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVLQADGSERSAAIN 136
Query: 112 AACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQ 149
A +A++N+GI M+ ++ VSC +N ++D N ++
Sbjct: 137 AVTIAMVNAGIPMKDLI--VSCSAGYMENTTVMDLNHVE 173
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRP 58
+ LR + ++N + SDGS QG T V+ ++ GP+E ++ + ++A++EV
Sbjct: 16 WNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNI 75
Query: 59 KSGLSFVQD-------RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
S +F + RL E + ++ T E +++ L+PRT++++ +Q L G +L+
Sbjct: 76 ASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAV 135
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN+ LALI++GISM ++ VSC + D+ +LD N ++ +
Sbjct: 136 INSITLALIDAGISMYDYVSGVSCGLYDQTP-LLDVNNLEEH 176
>gi|148692299|gb|EDL24246.1| exosome component 5, isoform CRA_a [Mus musculus]
Length = 128
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLT 84
RL ++ E LT
Sbjct: 87 PVSLQRLDQAEQDDGVEGKSLT 108
>gi|443897888|dbj|GAC75227.1| hypothetical protein PANT_14d00095 [Pseudozyma antarctica T-34]
Length = 348
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 35/168 (20%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L +++ +L+RSD S FS G VVAS+ GP E +++ + D+A+++V+F+P+ G+
Sbjct: 30 ALRPLSAEVGLLARSDASASFSFGALNVVASVSGPTEVRVRDELTDRATLDVVFQPQHGV 89
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL----------------------- 99
+ + + + + S LL HPR+ + L +Q L
Sbjct: 90 AGIPSQAVSDSLLTALSSVLLLHHHPRSLIQLVLQTLCSPSLPQSSEHTLPSDLASNQRY 149
Query: 100 -QDQGSLL-----------SCCINAACLALINSGISMRYILAAVSCII 135
Q LL + INAA LAL+++GI R + A +C I
Sbjct: 150 VPRQPLLLGPDAPPSVTEQAALINAASLALLDAGIPARGSVTACACAI 197
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR +K +L + + DGS QG T V+A++YGP +AK +T +I+ + F
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER 82
Query: 57 --RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
RP+ ++ ++ ++ +A+ + L+PR+ + + ++ LQD G+ + +NAA
Sbjct: 83 KNRPRGDRKSLEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D +Q +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISQFE 174
>gi|344302854|gb|EGW33128.1| hypothetical protein SPAPADRAFT_136405 [Spathaspora passalidarum
NRRL Y-27907]
Length = 219
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 79/136 (58%), Gaps = 7/136 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
Q+++L SDGS G T V+AS+ GP+E K ++ + ++AS+E+I RP GLS +++L
Sbjct: 6 QMSVLDNSDGSAELIIGNTKVIASVSGPIEPKQRQELPNQASLEIIIRPAKGLSTTREKL 65
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQEL------QDQGSLLSCCINAACLALINSGIS 123
E +++ +S ++ +PR + + +Q L + + L+ IN ALI++ I+
Sbjct: 66 LEDKLRALLQSIIIRYKYPRQLISIVVQFLVTDEDPKFTANELNAAINCCYFALIDADIA 125
Query: 124 MRYILAA-VSCIINDK 138
+ A+ VSCI +K
Sbjct: 126 LYSSFASVVSCITENK 141
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRP 58
+ LR + ++N + SDGS QG T V+ ++ GP+E ++ + ++A++EV
Sbjct: 16 WNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERANIEVNLNI 75
Query: 59 KSGLSFVQD-------RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
S +F + RL E + ++ T E +++ L+PRT++++ +Q L G +L+
Sbjct: 76 ASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLATI 135
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN+ LALI++GISM ++ VSC + D+ +LD N ++ +
Sbjct: 136 INSITLALIDAGISMYDYVSGVSCGLYDQTP-LLDVNNLEEH 176
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 26/164 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII--DKASVEVIF----- 56
LR+++ +L + S++DGS QG T V+A++YGP E + ++ + DK V +
Sbjct: 22 LRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRSKLLQDKVLVNCQYSMATF 81
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + + ++ T +A+LT LHPR+ + + ++ LQ G
Sbjct: 82 STSERKRRPRG------DRKSQEMTMHLQQTFNAAILTSLHPRSQIDIFVEVLQSDGGNY 135
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
+NAA LA+I++GI M+ Y+ A + + D I+D N ++
Sbjct: 136 CASVNAATLAVIDAGIPMKDYVCACSASYLGDSP--IVDINYLE 177
>gi|303282535|ref|XP_003060559.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458030|gb|EEH55328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 137
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%)
Query: 27 QTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTML 86
++VV A++YGP+E + K DK +EV+ RP SG D+ +E I+ E + T
Sbjct: 2 RSVVYAAVYGPMEIRAGKQDTDKLVIEVVVRPASGAPSSADKEREVTIRRALEHVVKTAA 61
Query: 87 HPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
HPR + + +Q + G + + +NAAC ALI++ + + +L A S + V++D
Sbjct: 62 HPRCGIRVVLQTVSSDGGIDAILLNAACAALIDASVDVTGVLCASSLAVLPGVGVVVD 119
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR + ++N S DGS QG + ++ + GP+E K++ + ++KA++EV
Sbjct: 19 WNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRSQMDVNKANIEVSISI 78
Query: 55 -----IFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
R K S + R+ E + I++T E+++++ L+PRT + + IQ L G LL+
Sbjct: 79 AHFSTFHRKKR--SKNEKRIVELKTAIENTFENSIISHLYPRTFIQINIQVLAQDGGLLA 136
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA LALI++GI+M ++ VS + D+ +LD N ++ N
Sbjct: 137 GMANAATLALIDAGIAMYDYVSCVSAGLYDQYP-LLDLNTLEEN 179
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 16/143 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R + +L + +++DGS QG T V+ ++YGP E + + +T D+ +V + S
Sbjct: 19 IRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTVNCQY---SMA 75
Query: 63 SFVQDRLKES------------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F + KE +++ E+A+L +P + + + LQ GS L+ C+
Sbjct: 76 TFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELLQADGSHLAACV 135
Query: 111 NAACLALINSGISMRYILAAVSC 133
NAA LAL ++G+ MR ++AA SC
Sbjct: 136 NAATLALADAGVPMRGLVAAASC 158
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASV--EVIFRPKSGLSFVQDRLKESV 73
+DG +QG T+V A+++GP EA+ ++ D+ASV EV P + + +
Sbjct: 37 ADGCAQITQGLTIVSATVFGPREARSGANVMHDRASVNVEVSVAPWGSMERRRRNRGDRR 96
Query: 74 -------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
IKST E + T L+PR+ + + +Q Q G +L INA+ LAL+++GI+M+
Sbjct: 97 LVEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINASTLALLDAGIAMQD 156
Query: 127 ILAAVSCIIN 136
+A+VSC I+
Sbjct: 157 FVASVSCGIH 166
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-----KASVEVI 55
+ LR + +Q++ + +DGS G T ++ S+ GP E + K VE+
Sbjct: 20 WNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQGKVEVEIN 79
Query: 56 FRPKSGLSFVQDRLK---------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
F +G S V R + E ++S E LL L+P +++ L I + GSLL
Sbjct: 80 F---AGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQDGSLL 136
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ CINAA LALI++GI M L A
Sbjct: 137 AACINAATLALIDAGIPMSDYLVA 160
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 18/162 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +R +K +L +L +DGS IF G T V+A++YGP E + + D+A + V +
Sbjct: 23 DEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRY---H 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES +L L PRT + + ++ LQ D G+ L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGTRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ AA +AL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLDLNEPED 179
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 18/162 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +R +K +L +L +DGS IF G T V+A++YGP E + + D+A + V +
Sbjct: 27 DEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRY---H 83
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES +L L PRT + + ++ LQ D G+ L
Sbjct: 84 MTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGTRL-V 142
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ AA +AL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 143 SLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLDLNEPED 183
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIF------ 56
LR++ ++ +LS++DGS G T +A++YGP E + + K + D+ + V F
Sbjct: 22 LRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFS 81
Query: 57 ------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+P+ + + +++ T E+A+L L+PR+ + + +Q LQ G CI
Sbjct: 82 TGERKKKPRGDRKATELSM---MVRRTFEAAILINLYPRSQIDIYVQVLQADGGNHVACI 138
Query: 111 NAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
NA LALIN+GI ++ Y+ A +ND ++D N ++
Sbjct: 139 NAVTLALINAGIPLKDYVSACTVSFVNDTP--LMDINYLE 176
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKAS--VEVIFRPKS 60
LR++ L+ + +DGS + S G T V+ S+YGP E K + ++ D+A+ VEV P S
Sbjct: 23 LRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATINVEVGTAPFS 82
Query: 61 GLSFVQDRLKESVIKSTC-------ESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + + C E +LT ++PR+++ + I LQ GSL+ CINA
Sbjct: 83 SGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQDGSLIPACINAT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALI +G+ + + AVS ++D E +LD ++ N
Sbjct: 143 TLALICAGVPLLDFVCAVSAGVHD-TESMLDLTTLEEN 179
>gi|296423938|ref|XP_002841509.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637749|emb|CAZ85700.1| unnamed protein product [Tuber melanosporum]
Length = 204
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKS 76
+DGS ++ G T ++AS+ GP+E K + I +A +E+ RP +G++ V+++ E++++S
Sbjct: 2 ADGSAQYTDGPTTLLASINGPIEVKPRDEIPLEAYLEITIRPSAGVTSVREKHLEALLRS 61
Query: 77 TCESALLTMLHPRTSVILTIQELQDQ--------GSLLSCCINAACLALINSGISMRYIL 128
++ +PRT + +T+Q +Q + +LL+ I LAL+++G+ MR +L
Sbjct: 62 AISPLIIRTAYPRTLLQITLQVIQHEQASMAYALHTLLTSAIVVVMLALVDAGVPMRGML 121
Query: 129 AA 130
AA
Sbjct: 122 AA 123
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA------------KIQKTIIDK 49
+ LR ++ +L + + DGS QG T V+A++YGP +A Q ++
Sbjct: 16 NELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVNCQYSMATF 75
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
++ E RP + L ++ +A+ T L+PR+ + + ++ LQ GS C
Sbjct: 76 STGERKNRPHGDRKSTEMSLH---LRQALTAAIKTELYPRSQIDVYVEVLQADGSCYCVC 132
Query: 110 INAACLALINSGISMRYILAAVSCIIN--DKNEVILDANQIQ 149
+NAA LALI++GI +R A S ++ D E +LD ++
Sbjct: 133 VNAATLALIDAGIPLRAYACACSASMSWRDDAEPLLDVGHVE 174
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 20/163 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF--- 56
+ LR ++ L I S++DGS QG T V+A++YGP E + K+ + DKA V +
Sbjct: 20 NELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAFVNCQYSTA 79
Query: 57 ---------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
RP+ + + ++ T +A+ T L+PR+ + + ++ LQ G +
Sbjct: 80 TFSMGERKRRPRGDRKSTE---MSTHLEETFAAAIRTELYPRSQIDIFVEVLQADGGNYT 136
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
C+NAA +AL+++G+ ++ + VSC + +V ++D N ++
Sbjct: 137 ACVNAAMMALVDAGVPLKDTV--VSCTASLVKDVPLVDVNHVE 177
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR ++L +DGS S G T V A +YGP EAK + +T+ D+A ++EV P +
Sbjct: 22 LRSFSAELTTHPSADGSASVSHGLTQVTACVYGPREAKNRAQTMHDRALVNIEVEVAPWA 81
Query: 61 GLSFVQ----DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G Q DR +K+T E + T L+PR+ + + I LQ G LL INA
Sbjct: 82 GEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYPRSEIDIHIHVLQLDGGLLQAGINAT 141
Query: 114 CLALINSGISM 124
LAL+++GI M
Sbjct: 142 TLALVDAGIPM 152
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 21/165 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
+ LR ++ +L + S+ DGS QG T V+A++YGP +A +K+ ++A V +
Sbjct: 17 NELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVNCQYSMATF 76
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + + +K +A+ L+PR+ + + I+ LQ G
Sbjct: 77 STGERKKRPRG------DRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQADGGNY 130
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+NAA LALI++GI ++ + A + + + N ++D + ++ N
Sbjct: 131 CASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEEN 175
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIF------ 56
R++ +L + ++DGS QG V+A++YGP E + ++ D+ V F
Sbjct: 61 RKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVIVNCQFSMATFS 120
Query: 57 ------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
RP+ + L I+ E+++LT L+PR+ + + ++ LQ G LS CI
Sbjct: 121 TLERKRRPRGDKKSQEMTLH---IQQAFEASILTQLYPRSQIDIFVETLQSDGGTLSVCI 177
Query: 111 NAACLALINSGISMRYILAAVS 132
NAA LALI++GI+++ + A S
Sbjct: 178 NAATLALIDAGIALKDYVCACS 199
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKAS--VEVIFRPKS 60
LR++ + +DG S G T V S++GP EA+++ +TI D+A+ VEV P S
Sbjct: 23 LRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARLRSQTIHDRANINVEVNIAPFS 82
Query: 61 GLSFVQDRLKE-------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + + IKST E + T L+PR+ + + + LQ G +L CINA
Sbjct: 83 TGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQIDIHVLVLQQDGGVLQACINAT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALI++GI + IL AV+ ++ + +LD ++ N
Sbjct: 143 TLALIDAGIPLLDILCAVTGGVHSTSP-LLDLTNLEEN 179
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR ++ ++ +LS +DGS G+T V+A++YGP E + + D+A + +
Sbjct: 28 DELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMALPDRALIRCRY---H 84
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K VI+ E + T L+PRT++ + I+ ++ G +
Sbjct: 85 MAPFSTDERKSPAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIEVIEADGGTRTAA 144
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ AA LAL ++G+ MR ++A V+ + + ++LD +Q++
Sbjct: 145 VTAASLALADAGVQMRDLVAGVA-VGKVQGVLVLDIDQLEDE 185
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKSGLS 63
R + Q+ +L ++GS + + G TVV+A++YGP E + T+ DKA V V +
Sbjct: 25 RPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVRVRYH---MAP 81
Query: 64 FVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F D K V+K E+ + +P++++ + ++ LQ GS I A
Sbjct: 82 FSTDDRKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQADGSTRVTSITA 141
Query: 113 ACLALINSGISMRYILAAVSC-IINDKNEVILDANQIQSN 151
A LAL ++GI MR ++ VS IND VI+D N+++ N
Sbjct: 142 ASLALADAGIPMRDLVVGVSVGKINDT--VIVDLNKLEDN 179
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIF------ 56
R++ +L + +++DGS QG V+A++YGP E + ++ D+ V F
Sbjct: 23 RKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVLVNCQFSMATFS 82
Query: 57 ------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
RP+ D+ + + I+ E+++LT L+PR+ + + ++ LQ G LS
Sbjct: 83 TLERKRRPRG------DKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVEVLQSDGGTLS 136
Query: 108 CCINAACLALINSGISMRYILAAVS 132
CINAA LALI++GI+++ + A S
Sbjct: 137 VCINAATLALIDAGIALKDYVCACS 161
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIF-- 56
+ LR + ++N S SDGS QG T V+ ++ GP+E + + DKA++EV
Sbjct: 19 WNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRAQMNQDKANLEVNLTI 78
Query: 57 ----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
R KS V+ R + ++ T E ++L L+PRT++ + +Q L G +L
Sbjct: 79 ANFSTFERKKRSKSEKRMVELR---TTLERTFEQSILLHLYPRTNITINVQVLSQDGGML 135
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ N+ LA+I++GI+M +++VSC + D++ +LD N ++
Sbjct: 136 AAITNSITLAIIDAGIAMYDYVSSVSCGLFDQSP-LLDLNNLE 177
>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
Length = 238
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ R L + L+R DGS F G + +AS+ GP+E ++ +A+ EV RP S
Sbjct: 12 EQFRPLHIVYDGLNRVDGSARFGFGNSAALASVSGPIEVRLAAEQSSQATFEVHVRPFSN 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQ------DQGSLLSCCINAACL 115
+ + + +VI+S +L+ +PRT V L +Q L ++ L + INA+ L
Sbjct: 72 VPATDSKSQATVIRSALTPSLILTKNPRTLVQLVVQNLSSASTNTERDGLTAAMINASTL 131
Query: 116 ALINSG-ISMRYILAAVSCIINDKNEVILD 144
AL+N+G + MR ++ AV+ E ++D
Sbjct: 132 ALLNAGSLPMRGVVCAVAVGRTSNGEFLVD 161
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
gi|413932392|gb|AFW66943.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 149
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG TVV+A++YGP + +KAS+EV+++PK+G
Sbjct: 14 NQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTG 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
Q+R E +K T +S L +HP T+ + +Q
Sbjct: 74 QIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQ 109
>gi|255716870|ref|XP_002554716.1| KLTH0F11924p [Lachancea thermotolerans]
gi|238936099|emb|CAR24279.1| KLTH0F11924p [Lachancea thermotolerans CBS 6340]
Length = 224
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+ +Q +L + DGS G+T V+ S+ GP+E K ++ + + ++EV+ RP G+ +
Sbjct: 2 ISAQTGVLDQVDGSCKLQCGETTVICSVTGPIEPKARQELPSQLALEVVVRPCKGVPNTR 61
Query: 67 DRLKESVIKSTCESALLTMLHPRTSV-----ILTIQELQDQGSL--LSCCINAACLALIN 119
++L E I+ L L+PR IL E +D+ ++ L+ CINAA LALI+
Sbjct: 62 EKLLEDQIRGVVTPVLAKYLYPRQLCQICFQILESGEPEDEYNVKELNSCINAAYLALID 121
Query: 120 SGISMR-YILAAVSCIINDKNEVILDANQIQ 149
SG++++ + ++ NE++++ Q Q
Sbjct: 122 SGVALQSSFSSVCVSVLGSNNEILVNPTQEQ 152
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 10/157 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFR--P 58
D LR + ++ IL + GS + S G+T V+A++YGP EA T+ D+A + + + P
Sbjct: 23 DQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPDRAILRIRYHMAP 82
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
KS ++ VI+ E+ + + L PRT++ + I+ LQ G + + A
Sbjct: 83 FSTSERKSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVLQADGGTRTTSLTA 142
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LAL ++GI M+ ++A V+ D ++LD N+I+
Sbjct: 143 ASLALADAGIPMKDLIAGVAVGKVD-GVLVLDINEIE 178
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +QK D+A + V +
Sbjct: 25 ELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIHPKHLQKP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E A++ L PRTS+ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA + D E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAACAAGKID-GEIVLDLNKEEDN 181
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRTS+ L I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTSIDLFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++G+ MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGVPMRDLVAA--CAAGKIEGEIVLDLNKDEDN 181
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFRPKS 60
+ LR ++ ++ +L +DGS I G+TVV+A++YGP E + I+D+A + +R S
Sbjct: 21 EDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIRCRYRMLS 80
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S + +R + VI+ E A+++ ++PRT++ + ++ + G + I
Sbjct: 81 -FSTLGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINANGGTRTAGI 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI + ++AAV+ D ++LD ++++
Sbjct: 140 TAASLALADAGIPLADLVAAVAVGKID-GVIVLDLDELE 177
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IID-------KASVEV 54
LR +K +L + + DGS QG T V+A++YGP +AK + T II+ ++ E
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKHTESIINCQYSQATFSTAER 82
Query: 55 IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
+RP+ ++ ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +NAA
Sbjct: 83 KYRPRGDRKSLEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D + +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISHFE 174
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR ++ ++ + ++ DGS QG T VVA++YGP E + + S VI S +
Sbjct: 19 LRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSA-VINCQYSMAT 77
Query: 64 FVQDRLKESV-----------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F + K +K +A+ T L+P++ + + +Q LQ G S C+NA
Sbjct: 78 FSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYSVCVNA 137
Query: 113 ACLALINSGISM-RYILAAVSCIINDKNEVI 142
A LALI++GI+M ++++ S + N + ++
Sbjct: 138 ATLALIDAGIAMEEFVISCTSSLANGETPLV 168
>gi|240964212|ref|XP_002400824.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215490745|gb|EEC00386.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 157
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 60/83 (72%)
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
DRL E V++ST E+ +L LHPRT + +++QEL + GSLL+CCINAACLA I++ I+M+
Sbjct: 6 DRLVEKVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAIDAAIAMKC 65
Query: 127 ILAAVSCIINDKNEVILDANQIQ 149
+AAVS I V+LD N+ Q
Sbjct: 66 QVAAVSAAITHTGIVVLDPNKKQ 88
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
D LR ++ +L + + DGS QG T V+A++YGP + K D A V F
Sbjct: 21 DELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVNCQFSMAVF 80
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + ++ +A+ L+P T + + ++ L G +
Sbjct: 81 STGERKKRPRG------DRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGGIY 134
Query: 107 SCCINAACLALINSGISMR-YILAAVSCIINDKNEVIL 143
C+NAA LALI++GI ++ Y+ A + + N N+V L
Sbjct: 135 PACVNAATLALIDAGIPLKEYVCACTASLAN--NDVPL 170
>gi|366993555|ref|XP_003676542.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
gi|342302409|emb|CCC70182.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
Length = 228
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
+Q+ L++ DGS + QT ++ S+ GP+E K ++ + + ++E+I RP +G+ +++
Sbjct: 5 AQMGPLTKVDGSSLIESKQTKIICSVTGPIEPKSRQELPTQLALEIIIRPAAGVPNTREK 64
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQ-------ELQDQGSLLSCCINAACLALINSG 121
L E +++ + L+PR +T+Q EL+ L+ CINA +ALI++G
Sbjct: 65 LMEDKLRAVITPIITRYLYPRQLCQITLQILNSGESELEFAQRELATCINATLIALIDAG 124
Query: 122 ISMRYILAAVSCIINDK 138
I++ + A V + K
Sbjct: 125 IALNSMCACVPIALTSK 141
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
+ +R +++++ + GS F GQT V+A ++GP + ++ + A + V F
Sbjct: 18 NEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGP---RDNRSGDNAAEIRVTFEYADF 74
Query: 58 ---PKSGLSFVQDRLKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
P + + + R +ES ++K T E A+ L P + +++ I +QD GS S INA
Sbjct: 75 AKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQDDGSCQSAAINA 134
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LALI++GI M + +++ + D ++ LDA + +SN
Sbjct: 135 ATLALIDAGIPMFDFVVSMTVALYD-DKCFLDAGRAESN 172
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R + ++L + ++GS G T V+ ++YGP E K K + D+ ++
Sbjct: 19 IRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSG 78
Query: 53 -EVIFRPKSGLSFVQ-DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
E RP+ + RL E ES +LT PR+ + + + +Q GS L+ C+
Sbjct: 79 LERKNRPRGDRKSTEMSRLLEKAF----ESVILTESFPRSQIDIFCEVIQGDGSNLAACV 134
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVI 142
NA LAL ++GI M+ I +A +C I + N ++
Sbjct: 135 NATSLALADAGIPMKGIASAATCGIVEGNPIV 166
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--SG 61
+R + ++L + ++GS G T V+ ++YGP E K K I DK ++ + SG
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSG 78
Query: 62 LSFVQ----DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
L DR + ++ ES +LT PR+ + + + +Q GS L+ C+NA
Sbjct: 79 LERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATS 138
Query: 115 LALINSGISMRYILAAVSCIINDKNEVI 142
LAL ++GI M+ I +A +C + D ++
Sbjct: 139 LALADAGIPMKGIASAATCGVVDGKPIV 166
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS-----VEVI 55
+ LR L + L++ S SDGS QG T ++A++ GP E +++T D +S VEV
Sbjct: 20 WNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQE-PVRRTGRDGSSEAKIEVEVN 78
Query: 56 FRPKSGL-----SFVQDRLKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
P SG + + R++E + + +L L+P + V + + L GSLL+
Sbjct: 79 VTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQDGSLLAA 138
Query: 109 CINAACLALINSGISMRYILAA 130
C+NAA LALI++GI M +AA
Sbjct: 139 CLNAATLALIDAGIPMTDYIAA 160
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR++K ++ +L +DGS G+ ++A++YGP E +QK D+A + V +
Sbjct: 24 ELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKP--DRAILRVRYNMA 81
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E A++ L PRTS+ + I+ LQ
Sbjct: 82 PFS----VEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQADAGTRV 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI M+ ++AA + D E++LD N+ + N
Sbjct: 138 AGITAASLALADAGIPMKDLVAACAAGKID-GEIVLDLNKEEDN 180
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ V+A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E ALL + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI M+ ++AA + D E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMKDLVAACAAGKID-GEIVLDLNKEEDN 181
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R + ++L + ++GS G T V+ ++YGP E K K + D+ ++
Sbjct: 135 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSG 194
Query: 53 -EVIFRPKSGLSFVQ-DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
E RP+ + RL E ES +LT PR+ + + + +Q GS L+ C+
Sbjct: 195 LERKNRPRGDRKSTEISRLLEKAF----ESVILTESFPRSQIDIFCEVIQGDGSNLAACV 250
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVI 142
NA LAL ++GI M+ I +A +C I D ++
Sbjct: 251 NATSLALADAGIPMKGIASAATCGIVDAKPIV 282
>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 260
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 79/148 (53%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + + ++ + GS ++ T+VVA+++GP + K + +++ VE SG++
Sbjct: 17 LRRQRLHRHYVAGAHGSAEYAIDGTIVVATVHGPQKVKPWREEVERGIVEFELTSASGMT 76
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++R E+ ++ E+ ++ PR + T + + D G+ + C+NA C ALI++ ++
Sbjct: 77 REEERACEARVRGAIEATVVRYDFPRLGLRATARIVSDDGNAEAACVNALCCALIDADVA 136
Query: 124 MRYILAAVSCIINDKNEVILDANQIQSN 151
M ++ A +C I ++D + + N
Sbjct: 137 MHGLICANACAILSDGTKVIDPTKREEN 164
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +K ++ +L R+DGS F G V+A +YGP E + K +V V +R
Sbjct: 20 FEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAV-VKYRYNM 78
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V DR + V + + +L L+P+T++ + ++ LQ + I
Sbjct: 79 APFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGI 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI MR ++++V+ D EV+LD + + N
Sbjct: 139 NAASVALADAGIPMRDLVSSVAIGKID-GEVVLDLDAKEDN 178
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR ++ ++ + ++ DGS QG T VVA++YGP E + + S VI S +
Sbjct: 19 LRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSA-VINCQYSMAT 77
Query: 64 FVQDRLKESV-----------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F + K +K +A+ T L+P++ + + +Q LQ G S C+NA
Sbjct: 78 FSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYSVCVNA 137
Query: 113 ACLALINSGISM-RYILAAVSCIINDKNEVI 142
A LALI++GI+M ++++ S + N + ++
Sbjct: 138 ATLALIDAGIAMEEFVISCTSSLANGETPLV 168
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-----KASVEVI 55
+ LR + +Q++ + +DGS G T ++ S+ GP E K K VE+
Sbjct: 20 WNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQAKVEVEIN 79
Query: 56 FRPKSGLSFV-------QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F SG+ + + E ++S E LL L+P +++ L I + GSLL+
Sbjct: 80 FAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQDGSLLAA 139
Query: 109 CINAACLALINSGISMRYILAA 130
CINA+ LALI++GI M L A
Sbjct: 140 CINASTLALIDAGIPMTDYLVA 161
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 19/157 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R L + + ++ +DGS +F G T V+A +YGP E + + DKA V + S
Sbjct: 21 MRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALVRCEY---SMA 77
Query: 63 SFVQDRLKES------------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F + VI T E+A++T L PR+ + + +Q LQ G + CI
Sbjct: 78 AFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQADGGTRAACI 137
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDAN 146
NAA +AL ++GI MR ++ VSC N +LD N
Sbjct: 138 NAASMALADAGIPMRDLV--VSCAAGYLNSTPLLDLN 172
>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111, partial [Schizophyllum
commune H4-8]
Length = 206
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
RE+ + L+R DGS FS G T +AS+ GP+E ++ +A+ EV RP S +
Sbjct: 1 REISVSFDGLARVDGSARFSFGDTTALASVSGPIEVRLAAEQPARATFEVNMRPISNVPA 60
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL-----QDQGSLLSCCINAACLALIN 119
+ + + +++ ++ +PRT + L +Q L + SLL+ INA LAL+N
Sbjct: 61 TEAKSIAASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLLAAMINAGSLALLN 120
Query: 120 SG-ISMRYILAAV 131
+G +MR ++ AV
Sbjct: 121 AGSAAMRGVVCAV 133
>gi|367015678|ref|XP_003682338.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
gi|359750000|emb|CCE93127.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
Length = 232
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+K +L+ DGS F T V+ ++ GPVE K ++ + + ++EV+ RP G+ +
Sbjct: 4 IKVSTGVLTNVDGSSQFECRDTKVLCAVTGPVEPKARQELPTRLALEVVVRPAKGVPNTR 63
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL----LSCCINAACLALIN 119
++L E +++ ++ +PR +T Q L +D+G LSCCINAA LALI+
Sbjct: 64 EKLMEDRLRAVLTPLIVCSKYPRQLCQITCQILEAGEDEGEFSQKELSCCINAAFLALID 123
Query: 120 SGISMRYILAAVS-CIINDKNEVILD 144
+ +++ ++VS ++ + E++L+
Sbjct: 124 AQLALHSFSSSVSLAVLKESGELVLN 149
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-----IIDKASVEVIF-- 56
LR +K +L + + DGS QG T V+A++YGP +AK +KT +I+ + F
Sbjct: 23 LRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVINCQYSQATFST 82
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
RP+ + ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +N
Sbjct: 83 SERKNRPRGDRKSQEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLN 139
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LALI++GI + + A + +++ N + D + I+
Sbjct: 140 AATLALIDAGICLNEFVVACTASLSNANIPLTDISHIE 177
>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
Length = 225
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++ ++L DGS + S T V+ S+ GP+E K ++ + + ++E+I +P G+ +
Sbjct: 1 METTTHVLGHVDGSSVVSNSGTKVICSVSGPMEPKSRQELPTQLALEIIVKPAEGVQSTR 60
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL------LSCCINAACLALINS 120
++L E I+S L LHPR V + +Q L+ S +S C+NAA LAL+++
Sbjct: 61 EKLMEDQIRSVLTPVLARYLHPRQFVQICLQVLEAGESRDYTVKEVSVCVNAAVLALVDA 120
Query: 121 GISM 124
G+ +
Sbjct: 121 GVPL 124
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 15/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+K + ++S +DGS + S G T VA++YGP E + ++ D+A + V + +
Sbjct: 21 DQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A+ PR+ + + ++ +Q GS +
Sbjct: 80 PFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSC-IINDKNEVILDANQIQSN 151
AA LAL ++G+ MR ++ VS ++N V+LD N ++ N
Sbjct: 140 TAASLALADAGVPMRDLVIGVSVGLVN--GTVVLDLNGLEDN 179
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 15/159 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI------- 55
+R+ + ++N LS +DGS G T+V A ++GP+E + + ++ E++
Sbjct: 18 EMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRR----NREGAELMVSYSQAT 73
Query: 56 FRPKSGLSFVQDRL---KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F + + DR ++K E ++T L P T + L +Q +QD GS+ + INA
Sbjct: 74 FATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGSVTAAVINA 133
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALI++GI M I+AA D ++++D N+ + N
Sbjct: 134 CTLALIDAGIPMIDIVAAAEGGYID-GKMVVDMNKDEEN 171
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFR--P 58
D +R + ++ +LS +DGS I S G+T V+A++YGP E + T++ D+AS+ V + P
Sbjct: 22 DEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLFVRYHMAP 81
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
KS + ++ V++ E ++T L PRT + + ++ LQ G + A
Sbjct: 82 FSTEERKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQSDGGTRTASATA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LAL ++GI MR ++A V+ D N V+LD N+ + N
Sbjct: 142 ASLALADAGIPMRALVAGVAIGKVD-NVVVLDLNEPEDN 179
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 18/163 (11%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEA-------------KIQKTI 46
+ LR + ++N + SDGS QG T V+ ++ GP E ++ TI
Sbjct: 16 WNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRAQMNQDKANLEVNLTI 75
Query: 47 IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ ++ E R KS V+ R + ++ T E ++L L+PRT++ + +Q L G +L
Sbjct: 76 ANFSTFERKKRSKSEKRMVELR---TTLERTFEQSVLLHLYPRTNITINVQVLSQDGGML 132
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ NA LA+I++GI+M +++VSC + D++ +LD N ++
Sbjct: 133 AAITNAITLAIIDAGIAMYDYVSSVSCGLIDQSP-LLDLNNLE 174
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-----IIDKASVEVIF-- 56
LR +K +L + + DGS QG T V+A++YGP +AK +KT II+ + F
Sbjct: 23 LRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIINCQYSQATFST 82
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
RP+ + ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +N
Sbjct: 83 SERKNRPRGDRKSQEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLN 139
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LALI++GI + + A + ++ N + D + I+
Sbjct: 140 AATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIE 177
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 83/155 (53%), Gaps = 12/155 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR +K +L + + DGS QG T V+A++YGP +AK ++T II+ + F
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQTESIINCQYSQATFSTAER 82
Query: 57 --RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
RP+ ++ ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +NAA
Sbjct: 83 KNRPRGDRKSLEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D + +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISHFE 174
>gi|354543692|emb|CCE40413.1| hypothetical protein CPAR2_104490 [Candida parapsilosis]
Length = 219
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
++LS +DGS + T + S+ GP+E K+++ + +AS+E+I RP SGLS +++L E
Sbjct: 6 SVLSNADGSAELTMNGTKCLVSVSGPIEPKVRQELPTQASLEIIVRPSSGLSTTREKLLE 65
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQEL-QDQGSLLSC-----CINAACLALINSGISMR 125
++S +S ++ +PR + + IQ L D+ +C IN ALI++ +++
Sbjct: 66 DKLRSLLQSLIIRYKYPRQLIQIVIQFLVVDEQPEYTCNELNAAINGCYFALIDADMALY 125
Query: 126 YILAAVSCIINDKN 139
A+ S IN N
Sbjct: 126 SSFASTSVCINSGN 139
>gi|406606222|emb|CCH42404.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 221
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
L+S+ IL+R DGS G+T V++S+ GP+E K ++ + +++EVI R G+S +
Sbjct: 3 LESETTILNRVDGSASLDAGETKVISSVSGPIEPKARQELPTTSALEVIIRADIGVSNTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQD------QGSLLSCCINAACLALINS 120
++L E +++ ++ L PR + +T Q L+ LS +N++ LALI++
Sbjct: 63 EKLLEDKLRAILSQVIIGHLFPRQLIQITSQVLESGEDREYTSKELSAIVNSSYLALIDA 122
Query: 121 GISMRYILAAVSCIINDKNEVILDANQIQ 149
I + AA I + E+I + Q
Sbjct: 123 NIGLSVSFAAQDIAITESGELIAGPTKEQ 151
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRTS+ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|353241739|emb|CCA73533.1| hypothetical protein PIIN_07486 [Piriformospora indica DSM 11827]
Length = 244
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
MD+LRE+ +++ L R D S F+ G + +AS+ GP+EAK+ KA+++++ RP S
Sbjct: 1 MDALREVTARIERLDRVDASARFAFGTSSALASVSGPIEAKLGVEAQSKATLDILVRPLS 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL--------------QDQGSLL 106
G+ + +RL S +++ A++ HPRT + + IQ L + S
Sbjct: 61 GIPGITERLLVSNLRNVFTPAIILGAHPRTLIQVVIQNLSPPPPSSNFKNSLFETNPSTT 120
Query: 107 SCCINAACLALINS 120
+ +NAA +A + +
Sbjct: 121 AVMVNAASIAFLQA 134
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV----- 54
+ +R ++N S DGS G T VV ++ GP E ++ D+A + V
Sbjct: 65 WNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVISVNVNVA 124
Query: 55 IFRPKSGLSFVQD--RLKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
F ++ + ++ RL E +I+ E A+LT L+PRT + + I + G LL CI
Sbjct: 125 SFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVIAQDGGLLPACI 184
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
NAACLA+I++G+ + ++A S + N +I D N ++
Sbjct: 185 NAACLAMIDAGVPLTDYVSACSSGVYSNNALI-DLNTLE 222
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-----IIDKASVEVIF-- 56
LR ++ +L + + DGS QG T V+A++YGP +AK +KT II+ + F
Sbjct: 23 LRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIINCQYSQATFST 82
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
RP+ + ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +N
Sbjct: 83 AERKNRPRGDRKSQEFKM---YLQQALSAAIKSELYPRSQIDVYVEVLQADGANYAVALN 139
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LALI++GI + ++ A + ++ N + D + I+
Sbjct: 140 AATLALIDAGICLNELIVACTASLSKNNIPLTDISHIE 177
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++G+ MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGVPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR--P 58
D LR +K + +L +DGS G T ++A++YGP E + + D+A + + P
Sbjct: 20 DELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIRCRYHMAP 79
Query: 59 KSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S DR + VI+ ES + + L+PRT++ + I+ LQ G +
Sbjct: 80 FS----TSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGGTRTT 135
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ AA LAL ++GI MR ++A V+ D ++LD ++++
Sbjct: 136 GLTAASLALADAGIPMRDLVAGVAAGKVD-GVLVLDIDEVEDE 177
>gi|116182446|ref|XP_001221072.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
gi|88186148|gb|EAQ93616.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
Length = 253
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
K+ L +L RSDGS +S + AS+ GP+EA+ + +A VEVI RP +G+ ++
Sbjct: 8 KAALGVLPRSDGSAKYSHAGYTLTASVNGPIEAQRRDEHAYEAHVEVIVRPAAGVGGTRE 67
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINA 112
R ES+++S+ +L PR+ V+L I++ + Q SL + +
Sbjct: 68 RHLESLLQSSLAQLILVKNFPRSLIQVVLQIEDSPENDYVNTKLVQASLNFAIMPALVQT 127
Query: 113 ACLALINSGISMR 125
A LAL+++G+ MR
Sbjct: 128 AILALLSAGVPMR 140
>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica CLIB122]
Length = 216
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
+NIL+ DGS + QG T V+ S+ GP+E + + A VE++ RP G + ++ L
Sbjct: 1 MNILNNVDGSAKWEQG-TSVICSVTGPIETRRRTDEPTLAQVELVIRPAIGQATTRETLI 59
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQEL-QDQGS-----LLSCCINAACLALINSGISM 124
+ I S + ++ L+PR + + IQ L Q +G+ L+ C+NA CLALI+S M
Sbjct: 60 KDRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLNAVCLALIDSRTPM 119
Query: 125 RYILAAVS-CIINDK 138
+ AV+ I++DK
Sbjct: 120 TGLFTAVAIAIVDDK 134
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|440300726|gb|ELP93173.1| exosome complex exonuclease RRP46, putative [Entamoeba invadens
IP1]
Length = 226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R L Q + ++SDG +F QG+T V+A + P K + A V+V F K ++
Sbjct: 17 IRALSYQREVNTKSDGCYMFHQGKTCVIAGVNAPRNTLKSKEQPNTAYVDVQFYEK--VA 74
Query: 64 FVQDRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
Q + K E ++S E A+L +PR + + IQ ++D G + S +NA +L+ S
Sbjct: 75 AQQGKRKTELEEFVRSGVEWAVLCEKYPRGLINVCIQTVKDDGCVESVGMNATMTSLLYS 134
Query: 121 GISMRYILAAVSCIINDKN-----EVILDAN 146
G+ M+ I+ + C+ KN E+++DAN
Sbjct: 135 GVDMKSIVVGM-CVAGFKNANGQYEIVVDAN 164
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R + ++L + ++GS G T V+ ++YGP E+K K + D+ ++
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSG 78
Query: 53 -EVIFRPKSGLSFVQ-DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
E RP+ + RL E ES +LT PR+ + + + +Q GS L+ C+
Sbjct: 79 LERKNRPRGDRKSTEISRLLEKAF----ESVILTESFPRSQIDIFCEVIQGDGSNLAACV 134
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVI 142
NA LAL ++GI M+ I +A +C I + ++
Sbjct: 135 NATSLALADAGIPMKGIASAATCGIVETKPIV 166
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-----IIDKASVEVIF-- 56
LR +K +L + + DGS QG T V+A++YGP +AK +K+ II+ + F
Sbjct: 23 LRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIINCQYSQATFST 82
Query: 57 -----RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
RP+ + ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +N
Sbjct: 83 AERKNRPRGDRKSQEFKM---YLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLN 139
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LALI++GI + + A + ++ N + D + I+
Sbjct: 140 AATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIE 177
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDIFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K + ++L R+DGS G+ V+A+++GP E + + D + + +R
Sbjct: 23 FDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVH-PRHLQDPSKAIIRYRYNM 81
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V K E+ ++ L PR+++ + ++ LQ + C+
Sbjct: 82 APFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACL 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL+++G+ M+ ++ +V+ D +++LD + + N
Sbjct: 142 NAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDN 181
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+D +R +K ++ +LSR+DGS G V+A++YGP E ++ + EV+ R K
Sbjct: 21 VDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRM---QKPNEVLVRYKY 77
Query: 61 GL-SF-VQDRLKESVIKSTC----------ESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ SF V+DR++ + + E ++T +P + + + LQ +
Sbjct: 78 NMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQADAGTRTA 137
Query: 109 CINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
INAA LAL ++GI M+ +++A C + +++LD N+ + N
Sbjct: 138 AINAATLALADAGIPMKGLVSA--CAVGKVDGQLVLDLNKPEDN 179
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI-FRPKS 60
+ LR +K + +L R+DGS G V+A++YGP E + + AS ++ +R
Sbjct: 20 NELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPRE--VHPRHLQNASRAIVRYRYNM 77
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V + ES +L L+PR++V + ++ LQ I
Sbjct: 78 AAFSVEERKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQADAGTRVAGI 137
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI MR +++A S D EV+LD N+ + N
Sbjct: 138 NAASVALADAGIPMRCLVSACSVGKID-GEVVLDLNKDEDN 177
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE++ + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGIYMRDLVIGVSVGLVD-GTVVLDLNGLE 177
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR++ L +DGS + G T V+ +++GP EAK++ +T+ D+A +VE+ P S
Sbjct: 23 LRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQTLHDRAVLNVEMSVAPFS 82
Query: 61 GLSFVQDRLKE-------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + ++I ST E + T L+PR+ + + + LQ GSLL CINA
Sbjct: 83 TGERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIYVHVLQQDGSLLPACINAT 142
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL+ +G+ + + AV+ ++ + +LD ++ N
Sbjct: 143 TLALVTAGVPLLDFVCAVTGGVHSTSP-LLDLTTLEEN 179
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 13/157 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFR 57
+ +RE ++ + + GS G T V+ ++ GP E I+ K+ +KA +VE+ F
Sbjct: 20 WNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFINVELNFA 79
Query: 58 PKSGLSFVQ-----DRLKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
P S + + R++E I+ T E A+ L+P++ + +++ L+D G ++ CI
Sbjct: 80 PFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVLEDDGGAIATCI 139
Query: 111 NAACLALINSGISM-RYILAAVSCIINDKNEVILDAN 146
NAA LALI++GI+M Y+ A + I + +V+LD N
Sbjct: 140 NAATLALIDAGIAMVDYVCCATAGIY--ETQVLLDLN 174
>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
Length = 226
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 12/139 (8%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L +SDGS G T V+AS+ GP+E K ++ + ++AS+E++ RP GL+ +++L E
Sbjct: 8 LLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQASLEILIRPAVGLATTREKLLED 67
Query: 73 VIKSTCESALLTMLHPRTSVILTIQ-----------ELQDQGSL-LSCCINAACLALINS 120
++S +S ++ +PR + + +Q +L D S L+ IN ALI++
Sbjct: 68 KLRSLLQSIIVRFKYPRQLIQVVVQFLISDSKRTETDLVDYTSNDLNAAINCCYYALIDA 127
Query: 121 GISMRYILAAVSCIINDKN 139
GI+++ ++S + + N
Sbjct: 128 GIALKASFVSLSIAVKNGN 146
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K + ++L R+DGS G+ V+A+++GP E + + D + + +R
Sbjct: 23 FDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEH-LQDPSKAIIRYRYNM 81
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V K E+ ++ L PR+++ + ++ LQ + C+
Sbjct: 82 APFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACL 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL+++G+ M+ ++ +V+ D +++LD + + N
Sbjct: 142 NAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDN 181
>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 225
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
IL +DGS + G T V+ S+ GP+E K ++ + +++S+E+I RP +GL +++L E
Sbjct: 12 ILENADGSAELTIGGTKVITSISGPIEPKQRQELPNQSSLEIIVRPATGLPTTREKLIED 71
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSL------LSCCINAACLALINSGISMRY 126
++S +S +++ +PR + + +Q S+ L+ IN+ ALI++ +++
Sbjct: 72 KLRSVLQSVIISYKYPRQLIQVVVQFCNTDESVEFNVNELNAAINSCYFALIDADVALYS 131
Query: 127 ILAAVSCIINDKN 139
A+V IN N
Sbjct: 132 SFASVVISINSGN 144
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKS 60
D LR +K + +L +DGS G+ V+A++YGP K+Q K + D V +R
Sbjct: 20 DELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGP--RKVQPKHLADPTQAIVRYRYNM 77
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V + ES ++ L PR+S+ + ++ LQ + C+
Sbjct: 78 APFSVEERKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQADAGSRTACL 137
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL+++GI M+ I+ +V+ D ++LD + + N
Sbjct: 138 NAASVALVDAGIPMKGIITSVAVAKVD-GVLVLDPMKEEDN 177
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI------- 55
+R+ + ++N LS +DGS G T+V A ++GP+E + + ++ E++
Sbjct: 18 EMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRR----NREGAELMVSYSQAT 73
Query: 56 FRPKSGLSFVQDRL---KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F + + DR ++K E ++T L P T + L +Q +QD GS+ + INA
Sbjct: 74 FATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGSVTAAVINA 133
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALI++GI M I++A D ++++D N+ + N
Sbjct: 134 CTLALIDAGIPMIDIVSAAEGGYID-GKMVVDMNKDEEN 171
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI------- 55
+R+ + ++N L+ SDGS G T+V A ++GP+E + + ++ E++
Sbjct: 18 EMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRRR----NREGAELMVSYSQAT 73
Query: 56 FRPKSGLSFVQDRL---KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F + + DR ++K E ++T L P T + L +Q +QD GS+ + INA
Sbjct: 74 FATRKRREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDGSVTAAVINA 133
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LALI++GI M I++A D ++++D N+ + N
Sbjct: 134 CTLALIDAGIPMIDIVSAAEGGYID-GKMVVDMNKDEEN 171
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +K ++ +L R+DGS F G +A++YGP E + K +V V +R
Sbjct: 20 FEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAV-VKYRYNM 78
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V DR + V + + +L L+P+T++ + ++ LQ + I
Sbjct: 79 APFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGI 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI MR ++++V+ D EV+LD + + N
Sbjct: 139 NAASVALADAGIPMRDLVSSVAIGKID-GEVVLDLDAKEDN 178
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE++ Q+ +S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++GI MR ++ VS + D V+LD N ++ N
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDN 179
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 15/139 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDK------------AS 51
LR +K +L + + DGS QG T V+A++YGP +AK KT + A+
Sbjct: 23 LRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIINCQYSQATFAT 82
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
E RP+ ++ ++ ++ +A+ + L+PR+ + + ++ LQ G+ + +N
Sbjct: 83 AERKNRPRGDRKSLEFKM---YLEQALSAAIKSELYPRSQIDIYVEVLQADGANYAVALN 139
Query: 112 AACLALINSGISMRYILAA 130
AA LALI++GI + + A
Sbjct: 140 AATLALIDAGICLNEFIVA 158
>gi|426196062|gb|EKV45991.1| hypothetical protein AGABI2DRAFT_193899 [Agaricus bisporus var.
bisporus H97]
Length = 264
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L+R DGS FS G+ VAS+ GP+E ++ +A+ EVI RP S ++ + + S
Sbjct: 23 LARVDGSARFSFGEISSVASVSGPIEVRLAAEQASQATFEVITRPLSNVAATESKAISSA 82
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQD-----QGSLLSCCINAACLALINS 120
+++ +L+ HPRT V L +Q L + L+SC IN++ LAL+N+
Sbjct: 83 VRAALIPSLILNKHPRTLVQLVVQALSSPRTRWKQPLISCMINSSSLALLNA 134
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA S + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAACSA-GKIEGEIVLDLNKEEDN 181
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 18/160 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPK 59
+D LR +K +L +L +DGS IF G T V+A++YGP E + + DKAS+ V +
Sbjct: 22 LDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLRVRY--- 78
Query: 60 SGLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLS 107
F D K VI+ ES +L L PRT + + ++ LQ D G+ L
Sbjct: 79 HMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGTRL- 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
+ AA +AL ++GI MR ++A V+ D ++LD N+
Sbjct: 138 VALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNE 176
>gi|367018248|ref|XP_003658409.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
gi|347005676|gb|AEO53164.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
Length = 253
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ L +L RSDGS +S V AS+ GP+EA+ + +A V+V+ RP +G+ ++
Sbjct: 8 EAALGVLPRSDGSAKYSHAGYTVTASVNGPIEAQRRDEHAYEAHVDVVVRPAAGVGGTRE 67
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINA 112
R ES+++S+ +L PR+ ++L I++ + Q SL + + A
Sbjct: 68 RHLESLLQSSLTQLILVKNFPRSLIQIVLQIEDSPENDHVNTKLVQASLNFAIMPALVQA 127
Query: 113 ACLALINSGISMR 125
A LAL+++G+ MR
Sbjct: 128 AILALLSAGVPMR 140
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK--TIIDKASVEV-----IFR 57
R ++ ++ ++S ++GS + + G TV++A++YGP E QK + DKA + V F
Sbjct: 25 RPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVP-QKHLELPDKAILRVRYHMIPFS 83
Query: 58 PKSGLSFVQDRLKE----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G +E VI++ E ++ PRT++ + I+ LQ GS I AA
Sbjct: 84 TSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGSTRVTGITAA 143
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LAL ++GI MR +L VS + +I+D NQ++
Sbjct: 144 SLALADAGIPMRDLLVGVS-VGKVSGTIIVDLNQLE 178
>gi|149245090|ref|XP_001527079.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449473|gb|EDK43729.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 12 NILSRSDGS--VIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
+IL +DGS ++++ T V+ S+ GP+E K ++ + +AS+E+I RP GLS +++L
Sbjct: 8 SILPNADGSAELVYTNNGTKVLCSVSGPIEPKPRQELPQQASLEIIVRPARGLSTTREKL 67
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL---LSCCINAACLALINSGIS 123
E ++S ++ ++ +PR +++ +Q L +D L LS IN AL+++ ++
Sbjct: 68 IEDKLRSLLQNIIIRYKYPRQLILIVVQFLVVDEDPVYLTNELSAAINCCFFALVDADVA 127
Query: 124 MRYILAAVS-CIIND 137
+ + A+V+ CI D
Sbjct: 128 LYWSFASVAVCIKGD 142
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKS 60
D +R LK Q +L R+DGS G +VA++YGP E K D+A V FR
Sbjct: 22 DEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR--FRYNM 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V +R + + K E A+ T +PRT++ + ++ LQ I
Sbjct: 80 APFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGI 139
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILD 144
+AA +AL ++GI MR ++AA C + +V+LD
Sbjct: 140 SAASVALADAGIEMRDLVAA--CAAGKVEGKVVLD 172
>gi|50288139|ref|XP_446498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525806|emb|CAG59425.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
+L +LS DGS T V+ ++ GPVE K ++ + + ++EVI RP G+ +++
Sbjct: 8 ELGLLSEVDGSAKLLMNSTNVLCAVTGPVEPKARQELPTEMALEVIVRPAKGVPTPREKY 67
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQ--------ELQDQGSLLSCCINAACLALINSG 121
E I++ + +PR +T Q +L +Q LS C+N+A LAL+N+G
Sbjct: 68 LEDKIRAIFTPLITRHKYPRQLCQITCQIMEAGENEQLHNQKE-LSACVNSALLALVNAG 126
Query: 122 ISMRYILAAVS-CIINDKNE 140
+++ + AAV+ +I+D+++
Sbjct: 127 VALNDLAAAVTIAVIDDQSQ 146
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR + ++N S DGS QG T ++ + GP+E ++ + ++VEV
Sbjct: 16 WNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKSQVNATSSTVEVNVSL 75
Query: 55 ----IFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F K S R+ E + ++ T ++ L+PRT + +T+Q L G LL+
Sbjct: 76 ANFSTFERKK-RSKTDKRITELKTTLERTFNECIMGHLYPRTLISVTVQVLAQDGGLLAA 134
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA LALI++GI+M ++ V+ + D+ +LD N ++ N
Sbjct: 135 MTNAVTLALIDAGIAMYDYVSGVNAGLYDQTSALLDLNTLEEN 177
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +K + +L R+DGS F G +A++YGP E + K +V V +R
Sbjct: 20 FEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAV-VKYRYNM 78
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V DR + V + + +L L+P+T++ + ++ LQ + I
Sbjct: 79 APFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGI 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI MR ++++V+ D EV+LD + + N
Sbjct: 139 NAASVALADAGIPMRDLVSSVAIGKID-GEVVLDLDAKEDN 178
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIF--- 56
D LR ++ +L + + DGS QG T V+A++YGP V K D A V F
Sbjct: 21 DELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAVVNCQFSMA 80
Query: 57 ---------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGS 104
RP+ DR + ++ +A+ L+P T + + ++ L G
Sbjct: 81 VFSTGERKKRPRG------DRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGG 134
Query: 105 LLSCCINAACLALINSGISMR-YILAAVSCIINDKNEVIL 143
+ C+NAA LALI++GI ++ Y+ A + + N N+V L
Sbjct: 135 IYPACVNAATLALIDAGIPLKEYVCACTASLAN--NDVPL 172
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K ++ +L +DGS I G T ++A++YGP E + + ++A + V +
Sbjct: 23 DELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLRVRY---H 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES +L PRTS+ + ++ LQ D G+ L+
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQADAGTRLAS 139
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ AA LA++++GI +R ++AAV+ D V+LD N+ +
Sbjct: 140 LM-AASLAVVDAGIPVRDLIAAVAVGKAD-GVVVLDLNEPED 179
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K ++ +L R+DGS G V+A++YGP E + K +V V FR
Sbjct: 19 FDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNM 77
Query: 61 GLSFVQDRLKESV------IKSTCESA----LLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR + I C A ++ L+P+T + + ++ LQ + I
Sbjct: 78 APFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSDAGTRTAGI 137
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI M+ ++++++ + E++LD N + N
Sbjct: 138 NAASIALADAGIPMKDLVSSIA-VGKIGGEMVLDLNAAEDN 177
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR L+ +N + SDGS QG V+ + GP E K++ + + KA++ V
Sbjct: 19 WNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKATISVALNI 78
Query: 55 -----IFRPKSGLSFVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
I R KS + L+ ++ + T E ++ L+PRT + + I LQ G L+S
Sbjct: 79 TRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHVLQQDGGLMSS 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GI+M ++ VS + D +LD N ++ N
Sbjct: 139 LINGITLALIDAGIAMYDYISGVSIGLYDTTP-LLDLNSVEEN 180
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR--P 58
+ LR +K + +L +DGS G T V+A++YGP E + + D+A + + P
Sbjct: 20 NELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIRCRYHMAP 79
Query: 59 KSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S DR + VI+ ES + + L+PRT++ + I+ LQ G +
Sbjct: 80 FS----TSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGGTRTT 135
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ AA LAL ++GI MR ++A V+ D ++LD ++++
Sbjct: 136 GLTAASLALADAGIPMRDLVAGVAVGKVD-GVLVLDIDEVEDE 177
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKSGL 62
+RE+K + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MAPF 59
Query: 63 SFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
S +R + V++ E A++ +PR+ + + ++ LQ GS + A
Sbjct: 60 STKDERKSPTPSRREIEISKVLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVASLTA 119
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LAL ++GI MR ++ VS + D V+LD N ++
Sbjct: 120 ASLALADAGIYMRDLVIGVSVGLVDGT-VVLDLNGLE 155
>gi|365992048|ref|XP_003672852.1| hypothetical protein NDAI_0L01240 [Naumovozyma dairenensis CBS 421]
gi|410729931|ref|XP_003671144.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
gi|401779963|emb|CCD25901.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++ IL++ DGS +T + S+ GP+E K ++ + + ++E+I RP G+ +
Sbjct: 3 FQAETGILTQVDGSSQIQSQKTKIFCSVTGPIEPKARQELPTQLALEIIVRPSLGVPNTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-------LLSCCINAACLALIN 119
++L E +++ + L+PR +T+Q L S ++ INA LALI+
Sbjct: 63 EKLIEDKLRAVFTPLITRYLYPRQLCQITLQILSSGESEQEFTQREVANSINATLLALID 122
Query: 120 SGISMRYILAAVSCIINDKNEVILDANQIQ 149
+GI++ + AA+S I+ +++I+D N Q
Sbjct: 123 AGIALNSMCAAISLAISSDDKLIMDPNDEQ 152
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 89/162 (54%), Gaps = 12/162 (7%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR- 57
+ LR + ++N + S DGS QG T V+ ++GP E ++ ++ ++A++E+
Sbjct: 19 WNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRATIEINLNV 78
Query: 58 ------PKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
+ + + R+ E + ++ T E ++L L+PRT + + +Q L G +L+
Sbjct: 79 ASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVLAQDGGMLASI 138
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA LAL+++GI+M ++AV+ ++D+ +LD N ++ N
Sbjct: 139 TNAITLALVDAGIAMYDYVSAVNVALHDQTP-LLDLNTLEEN 179
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
LR++ ++ +L +DGS G+ ++A++YGP E I + + V+ +
Sbjct: 24 ELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPRE--IHPKHLQRPDTAVLRVRYNMA 81
Query: 63 SF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F V++R K VI+ E AL+ + PRT V + I+ LQ I
Sbjct: 82 PFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGIT 141
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++G+ MR ++AA + D E++LD N+ + N
Sbjct: 142 AASLALADAGVPMRDLVAACAAGKID-GEIVLDLNKDEDN 180
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
LR++ ++ +L +DGS G+ ++A++YGP E I + + V+ +
Sbjct: 25 ELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPRE--IHPKHLQRPDTAVLRVRYNMA 82
Query: 63 SF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F V++R K VI+ E AL+ + PRT V + I+ LQ I
Sbjct: 83 PFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGIT 142
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++G+ MR ++AA + D E++LD N+ + N
Sbjct: 143 AASLALADAGVPMRDLVAACAAGKID-GEIVLDLNKDEDN 181
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPV-EAK--------IQKTIIDKAS 51
+ LR + +Q++ + +DGS G T V+ S+ GP E+K I + K
Sbjct: 20 WNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGISNDKLAKID 79
Query: 52 VEVIFRPKSGLSFVQDRLK---------ESVIKSTCESALLTMLHPRTSVILTIQELQDQ 102
VE+ F +G S V R + E ++S E L L+PR+++ + + +
Sbjct: 80 VEINF---AGFSGVDRRKRKTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVHVVSQD 136
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSLL+ C+NAA LAL+++GI M L A
Sbjct: 137 GSLLAACLNAATLALVDAGIPMTDYLVA 164
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 19/158 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-------KASVEVIF 56
LR L ++ ++DGS QG T V+A++YGP +A+ K I+ ++ E
Sbjct: 28 LRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDAQHDKAFINCQFSMATFSTSERKK 87
Query: 57 RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC----CINA 112
RP S ++ L +K T E+A+LT +P + + + +Q LQ GS +C INA
Sbjct: 88 RPTGDKSCLETSL---ALKKTFEAAILTDTYPHSKIDIFVQILQSDGS--NCDKAVSINA 142
Query: 113 ACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
+ALI++GI M+ Y+ A +IND I+D N +
Sbjct: 143 ITMALIDAGIPMKDYVCATSVTLINDT--PIVDLNYFE 178
>gi|440636348|gb|ELR06267.1| hypothetical protein GMDG_02061 [Geomyces destructans 20631-21]
Length = 245
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 87/166 (52%), Gaps = 15/166 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S +E + L+ L +DGS FSQ ++ ++ GP+E + + + ++A+++VI RP +
Sbjct: 1 MSSSQEPSAILSHLHSTDGSATFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ-------------ELQDQGSL-- 105
G+ ++R ES+I+ T +L PRT + +T+Q +Q +L
Sbjct: 61 GVGSTRERHLESIIERTLRQMVLISNFPRTLIQVTLQVTSIPPDETATSKSIQTSSTLPI 120
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
L + A LAL+++ I + L A I++K +++ + + +++
Sbjct: 121 LPALLQTAILALLSAAIPLSTSLTATFLAISEKGKILQNPSLLETQ 166
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA------KIQKTII----DKAS 51
D LR +K ++ +L R+DGS G V+A++YGP E ++ + I+ + AS
Sbjct: 20 DELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQEVTRAIVRYRYNMAS 79
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCE---SALLTMLHPRTSVILTIQELQDQGSLLSC 108
V R + G DR V K + E S +LT PR+ V + ++ LQ +
Sbjct: 80 FSVEERKRPG----PDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVLQADAGTRTA 135
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
INAA +AL ++GI M+ ++++ + D E++LD + + N
Sbjct: 136 GINAASVALADAGIPMKGLISSCAAGKVD-GEIVLDPMKAEDN 177
>gi|448116061|ref|XP_004202964.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359383832|emb|CCE79748.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 17/138 (12%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L++ DGS G+T +VAS+ GP+E + ++ + + AS+E+I RP G+S +++L E
Sbjct: 9 MLNKVDGSAEVEIGKTKLVASVSGPIEPRSRQELPNSASLEIIIRPAIGVSTTREKLIED 68
Query: 73 VIKSTCESALLTMLHPRTSVILTIQEL--QDQGSL--------------LSCCINAACLA 116
++S +S ++ +PR + + +Q L +D + L+ INA A
Sbjct: 69 KLRSLLQSVIIRHKYPRQLIQIVVQFLVTEDTNNYYITESQKQKLTSIELNAAINACYFA 128
Query: 117 LINSGISMRYILAAVSCI 134
LI+S I++ Y ++V CI
Sbjct: 129 LIDSNIALYYSFSSV-CI 145
>gi|156839667|ref|XP_001643522.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156114136|gb|EDO15664.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 223
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
+ +L+ DGS T V+ ++ GP+E K ++ + + ++E+I RP G+ +++L
Sbjct: 7 IGLLTEVDGSSQVECEDTKVICAVTGPIEPKARQELPTQLALEIIVRPAKGVPSTREKLM 66
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-------LLSCCINAACLALINSGIS 123
E ++S + +PR +T Q L+ S LSCCINA LALI+SG++
Sbjct: 67 EDRLRSVITPIVSLYQYPRKLCQITCQILESGESEYEFSQKELSCCINATLLALIDSGLA 126
Query: 124 MRYILAAVS-CIINDKNEVILDANQIQ 149
+ I ++VS I+ ++VI++ Q
Sbjct: 127 LNSIASSVSMAILKGSDDVIINPTNSQ 153
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFRPKS 60
+ LR ++ Q+ IL +DGS + G+T V+A++YGP E + ++ D+A++ V +
Sbjct: 24 EDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRY---H 80
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K V++ E +L PRT + + ++ LQ G +
Sbjct: 81 MAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAA 140
Query: 110 INAACLALINSGISMRYILAAVSC 133
+ AA LAL ++GI MR ++ V+
Sbjct: 141 VTAASLALADAGIPMRALVGGVAV 164
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA---KIQKTIIDKASVEVIFRPKS 60
LR +K ++ +L R+DGS G ++A++YGP EA +Q+ D+A V + S
Sbjct: 25 LRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA--DRAIVRARY---S 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K VI ES + +PRTS+ + I+ LQ
Sbjct: 80 MAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAG 139
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNE-VILDANQIQSN 151
I A LAL ++GI MR ++ V C ++ V+LD N+ + N
Sbjct: 140 ITVASLALADAGIPMRDLI--VGCAAGKIDDVVVLDLNKEEDN 180
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +K + +L R+DGS F G +A++YGP E + K +V V +R
Sbjct: 20 FEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAV-VKYRYNM 78
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V DR + V + + +L L+P+T++ + ++ LQ + I
Sbjct: 79 APFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGI 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI M+ ++++V+ D EV+LD + + N
Sbjct: 139 NAASVALADAGIPMKDLVSSVAIGKID-GEVVLDLDAKEDN 178
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA---KIQKTIIDKASVEVIFRPKS 60
LR +K ++ +L R+DGS G ++A++YGP EA +Q+ D+A V + S
Sbjct: 23 LRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA--DRAIVRARY---S 77
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K VI ES + +PRTS+ + I+ LQ
Sbjct: 78 MAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAG 137
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNE-VILDANQIQSN 151
I A LAL ++GI MR ++ V C ++ V+LD N+ + N
Sbjct: 138 ITVASLALADAGIPMRDLI--VGCAAGKIDDVVVLDLNKEEDN 178
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +K + +L+R+DGS G VVA++YGP E K + D + + +R
Sbjct: 18 FEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVH-PKHLEDPSKAIIRYRYSM 76
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V + E ++ L PR+++ + ++ LQ + C+
Sbjct: 77 APFSVEERKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQADAGSRTACL 136
Query: 111 NAACLALINSGISMRYILAAVSC 133
NAA +ALI++GI M+ ++ +V+
Sbjct: 137 NAASVALIDAGIPMKGMVTSVAV 159
>gi|294655825|ref|XP_458018.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
gi|199430635|emb|CAG86078.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
Length = 235
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 19/153 (12%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+LSR DGS S G T V+ S+ GP+E KI++ + + AS+E+I RP G+S +++ E
Sbjct: 9 VLSRVDGSAELSVGTTKVITSVTGPIEPKIRQELPNLASLEIIVRPSLGVSTTREKALED 68
Query: 73 VIKSTCESALLTMLHPRTSVILTIQEL------QDQGS----------LLSCCINAACLA 116
++S +S ++ +PR + + +Q L D GS L+ IN A
Sbjct: 69 KLRSILQSIIIRYKYPRQLIQIVVQFLITENNINDNGSNQHNKDFTSTELNAAINCCYFA 128
Query: 117 LINSGISMRYILAAVS-CIIND--KNEVILDAN 146
LI++ I++ ++ S CI D K I + N
Sbjct: 129 LIDANIALYNSFSSTSICIPLDTKKENYIFNPN 161
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+ + I+S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + +++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++G+ MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGVYMRDLVIGVSVGLVD-GAVVLDLNGLE 177
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFR--PK 59
LR L L + ++DGS SQG T V A+++GP E K QK DKA+V V P
Sbjct: 22 LRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPK-QKAGAAHDKANVVVEVGVVPW 80
Query: 60 S-------GLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ G + RL E + I+ T E + L+PR+ + + +Q LQ G +L I
Sbjct: 81 AQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVLQADGGILPTAI 140
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA LALI++GI+M + +VS ++ + +LD + + N
Sbjct: 141 NAVTLALIDAGIAMHDYVTSVSVGLH-LTQALLDLSAPEEN 180
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP----------VEAKIQKTIIDKASV 52
LR+++ ++ +L +DGS G ++A++YGP E I + + A
Sbjct: 25 ELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIHPKHLQRPETAILRVRYNMAPF 84
Query: 53 EVIFRPKSGLSFVQDRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
V R K G DR VI + AL+ + PRT + + I+ LQ
Sbjct: 85 SVEERKKPG----PDRRSVEISKVIHGALQPALILEMFPRTVIDVFIEVLQADAGTRVAG 140
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA + D E++LD N+ + N
Sbjct: 141 ITAASLALADAGIPMRDLVAACAAGKID-GEIVLDPNKEEDN 181
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFR--PK 59
LR L L + ++DGS SQG T V A+++GP E K QK DKA+V V P
Sbjct: 22 LRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPK-QKAGAAHDKANVVVEVGVVPW 80
Query: 60 S-------GLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ G + RL E + I+ T E + L+PR+ + + +Q LQ G +L I
Sbjct: 81 AQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVLQADGGILPTAI 140
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA LALI++GI+M + +VS ++ + +LD + + N
Sbjct: 141 NAVTLALIDAGIAMHDYVTSVSVGLH-LTQALLDLSAPEEN 180
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK--TIIDKASVEVIFRPKSGL 62
R ++ ++ ++ ++GS + + G TV++A++YGP E QK + DKA + V + +
Sbjct: 25 RPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVP-QKHLELPDKAILRVRYH-MAPF 82
Query: 63 SFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
S + R + VI++ E ++ PRT++ + I+ LQ GS I A
Sbjct: 83 STSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGSTRVTGITA 142
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LAL ++GI MR +L VS I +++D NQ++
Sbjct: 143 ASLALADAGIPMRDLLVGVS-IGKVSGTIVVDLNQLE 178
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-------IIDKASVEVIF 56
LR +K +L + + DGS QG T V+A++YGP +AK + II+ + F
Sbjct: 23 LRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVIINCQYSQATF 82
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP+ + ++ ++ +A+ + L+PR+ + + ++ LQ G+ +
Sbjct: 83 STAERKNRPRGDRKSQEFKM---YLQQALSAAIKSELYPRSQIDVYVEVLQADGANYAVA 139
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+NAA LALI++GI + + A + ++ N + D +Q++
Sbjct: 140 LNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVE 179
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K ++ +L R+DGS G V+A++YGP E + K +V + FR
Sbjct: 19 FDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAV-IKFRYNM 77
Query: 61 GLSFVQDRLKESV------IKSTCESA----LLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR + I C A ++ L+P+ + + ++ LQ + I
Sbjct: 78 APFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGTRTAGI 137
Query: 111 NAACLALINSGISMRYILAAVSC-IINDKNEVILDANQIQSN 151
NAA +AL ++GI M+ ++++++ IN EV+LD N + N
Sbjct: 138 NAASIALADAGIPMKDLVSSIAVGKIN--GEVVLDLNAAEDN 177
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQK-------------TIIDKASVEVIFRPKSGLS 63
SDGS QG T V+ + GP+E ++ ++ + ++ E R KS
Sbjct: 33 SDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEATLEVNLSVANFSTTERKKRSKSEKR 92
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
VQ LK + ++ T + +++ L+PRT + + + L G +L+ C NA LALI++G+S
Sbjct: 93 MVQ--LK-TTLERTFQQSVMCNLYPRTLIRIDLHVLSQDGGMLAACTNAMTLALIDAGVS 149
Query: 124 MRYILAAVSCIINDKNEVILDANQIQSN 151
M +AA++ ++D+ +LD N ++ N
Sbjct: 150 MYDYVAAMTAGLHDQTP-LLDMNGLEEN 176
>gi|46108418|ref|XP_381267.1| hypothetical protein FG01091.1 [Gibberella zeae PH-1]
Length = 250
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M E +++++L++SDGS FS G V+A++ GPVEA+ + +A V+VI RP +
Sbjct: 1 MAPFTEPTAEISLLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSL 105
G+ ++R ES++++ + +PR+ + +T+Q + Q +
Sbjct: 61 GVGGTRERQLESIMQAALRQLIPVRDYPRSVIQITLQVAETPENAYVNAKIVQAQLNLPI 120
Query: 106 LSCCINAACLALINSGISMRYILAA--VSCIINDKNEVILDANQI 148
+ +++A L L+++ I ++ I AA ++ + ++I+D + +
Sbjct: 121 IPALLHSAILGLLSAAIPLKTIGAATLIAVPEEEGKDIIVDPSAV 165
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----------DKA 50
D LR LK + +L R+DGS G V+A++YGP E I++ ++ + A
Sbjct: 25 FDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLRCKYNMA 84
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLS 107
V R + G DR + K T E+ A+ PR+++ + I+ L+ +G
Sbjct: 85 PFSVDDRKRPG----PDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGGTRC 140
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQ 149
I AA +AL ++G+ MR I+ V+C N +V++D ++++
Sbjct: 141 AGITAASVALADAGVPMRDIV--VACAAGKSNGQVVMDLSEVE 181
>gi|340924154|gb|EGS19057.1| hypothetical protein CTHT_0056790 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 258
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 15/130 (11%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L +L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +G+ ++R
Sbjct: 14 LGVLPRADGSARYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHL 73
Query: 71 ESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINAACL 115
ES+++S+ +L PR+ ++L ++E + Q SL + A L
Sbjct: 74 ESILQSSFAQIILVKSFPRSLIQIVLQVEESPENEYVNTKLVQASLNFAVMPALFQTAML 133
Query: 116 ALINSGISMR 125
AL+++G+ MR
Sbjct: 134 ALLSAGVPMR 143
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+D +R +K + +LSR+DGS G+ V+A++YGP ++ I A++ + +R
Sbjct: 21 VDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQIPDAAL-IRYRYNM 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V+DR++ V E +LT +P T + + + +Q + I
Sbjct: 80 ASFSVEDRIRPGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFTEIIQADAGTRTAAI 139
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
NAA +AL ++GI M+ +++A C + +++LD N+ + N
Sbjct: 140 NAASIALADAGIPMKGLVSA--CAVGKVDGQLVLDLNKDEDN 179
>gi|358060529|dbj|GAA93934.1| hypothetical protein E5Q_00580 [Mixia osmundae IAM 14324]
Length = 244
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+D++R L+ L LS+SDGS FS GQ V+A++ GP E +++ + D+A++E+ P
Sbjct: 9 LDAIRSLRISLGQLSKSDGSASFSFGQVSVLAAVRGPQEVSLKRELADRAALEITVLPVR 68
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
GL + S+I S LL HPR+ + LT+Q
Sbjct: 69 GLPGPAAKAVASMITPVLVSLLLLHAHPRSLLQLTLQ 105
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 20/148 (13%)
Query: 1 MDSLRELKSQLNILS-RSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASV--EVIF 56
+ LR + QL+ S +DGS QG T V+ ++ GP E + QK D A+V EV F
Sbjct: 11 WNELRRIHCQLSTSSTNADGSSYIEQGFTKVLCNVTGPAEPSSRQKVKQDAATVTCEVYF 70
Query: 57 RPKSGLSFVQDRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
SG DR+K ++ I+ T S +LT L R+ + ++I L G
Sbjct: 71 AAFSGT----DRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHILSQDGGT 126
Query: 106 LSCCINAACLALINSGISMR-YILAAVS 132
L+ CINA LALI++GI ++ Y+ A S
Sbjct: 127 LAACINATTLALIDAGIPLKDYVCACTS 154
>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
Length = 239
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+ + + I + +GS FS G + V+A+++ P EA K K+ +EVI RP+ G
Sbjct: 16 ISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNKC---KSYLEVILRPRIGQPQES 72
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
+L E I E + R + +T+Q + + G +L CINAA LALI+SGI M +
Sbjct: 73 HKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSEDGPILPVCINAAVLALIDSGIPMEF 132
Query: 127 ILAAVS 132
A+S
Sbjct: 133 FPLAIS 138
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K ++ +L R+DGS G V+A++YGP E + K +V V FR
Sbjct: 19 FDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNM 77
Query: 61 GLSFVQDRLKESV------IKSTCESA----LLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR + I C A ++ L+P+ + + ++ LQ + I
Sbjct: 78 APFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGTRTAGI 137
Query: 111 NAACLALINSGISMRYILAAVSC-IINDKNEVILDANQIQSN 151
NAA +AL ++GI M+ ++++++ IN E++LD N + N
Sbjct: 138 NAASIALADAGIPMKDLVSSIAVGKIN--GEMVLDLNAAEDN 177
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 2 DSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK- 59
D LR L+ +L S S DGS G T V+A++YGP E + + + E I +
Sbjct: 17 DELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKEEAILNVQF 76
Query: 60 SGLSFVQDRLKE------------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
S +F K+ + +K T + + T L+PR+ + + ++ LQ G
Sbjct: 77 SSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVLQTDGGHYC 136
Query: 108 CCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQSN 151
+NAA LALI++GI +R Y+ A + +I K +LD + ++SN
Sbjct: 137 ASVNAATLALIHAGIPLRDYVCACSASLI--KETPLLDISMLESN 179
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK----TIIDKAS---VE 53
+ LR + +Q++ + +DGS G T V+ S+ GP Q T DK + VE
Sbjct: 20 WNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGPAAEGKQTGQRGTTSDKLAKIDVE 79
Query: 54 VIFRPKSGLSFVQDRLK---------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
+ F +G S V R + E ++S E + L+PR+++ + + + GS
Sbjct: 80 INF---AGFSGVDRRKRKTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHIVSQDGS 136
Query: 105 LLSCCINAACLALINSGISMRYILAA 130
LL+ C+NAA LAL+++GI M L A
Sbjct: 137 LLAACLNAATLALVDAGIPMTDYLVA 162
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR +K Q +L R+DGS G V+A++YGP E + + +AS ++ + S
Sbjct: 22 LRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPRE--VHPRHLQQASNAIVRYRYNMAS 79
Query: 64 F-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F V++R + V + ES +L L+PR+++ + ++ LQ INA
Sbjct: 80 FSVEERKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQADAGTRVAGINA 139
Query: 113 ACLALINSGISMRYILAAVSCIINDKNE-VILDANQIQSN 151
A +AL ++GI M+ +++A C + ++ ++LD N+ + N
Sbjct: 140 ASVALADAGIPMKCLVSA--CAVGKADDTLVLDLNKDEDN 177
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+ + ++S +DGS + S G TV VA++YGP E + ++ DKA + V + +
Sbjct: 21 DQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDKAVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A+ PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMR 125
AA LAL ++GI MR
Sbjct: 140 TAASLALADAGIPMR 154
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K ++ +L +DGS + G T ++A++YGP E + + ++A++ V +
Sbjct: 23 DELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES++L PR+S+ + ++ +Q D G+ L+
Sbjct: 80 MTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQADAGTRLAS 139
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LA+I++GI +R +AAV+ D V+LD N+ +
Sbjct: 140 LM-AASLAIIDAGIPVRDAIAAVAVGKAD-GVVVLDLNEPE 178
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI-FRPK 59
++ LR ++ + +L R+DGS G V+A++YGP E + + AS ++ +R
Sbjct: 19 LNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPRE--VHPRHLQNASRAIVRYRYN 76
Query: 60 SGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
V++R + V + ES ++ L+PR+++ + ++ LQ
Sbjct: 77 MAAFSVEERKRPGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQADAGTRVAG 136
Query: 110 INAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
INAA +AL ++GI MR +++A C + E++LD N+ + N
Sbjct: 137 INAASVALADAGIPMRCLVSA--CAVGKVDGELVLDLNKDEDN 177
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIFR 57
LR QL+ SDGS +QG T VV S++GP E A + ++ V +
Sbjct: 24 LRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVVSVEVGVVPWA 83
Query: 58 PKSGLSFVQD--RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+G + RL+E + I+ T E ++T L+PR+ + + +Q L G +L INA
Sbjct: 84 AGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGGILPTSINAT 143
Query: 114 CLALINSGISMRYILAAVS 132
LALI++GIS+ ++++S
Sbjct: 144 TLALIDAGISLLDYVSSIS 162
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K ++ +L R+DGS G V+A++YGP E + K +V V FR
Sbjct: 19 FDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNM 77
Query: 61 GLSFVQDRLKESV------IKSTCESA----LLTMLHPRTSVILTIQELQDQGSLLSCCI 110
DR + I C A ++ L+P+ + + ++ LQ + I
Sbjct: 78 APFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSDAGTRTAGI 137
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI M+ ++++++ + E++LD N + N
Sbjct: 138 NAASIALADAGIPMKDLVSSIA-VGKIGGEMVLDLNAAEDN 177
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R+L ++L ++ ++GS +F G T V+A++YGP E + + + D+A V + S
Sbjct: 19 MRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVRCEY---SMA 75
Query: 63 SFVQDRLKES------------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F + VI+ T E+A+LT L P++ + + +Q LQ G S CI
Sbjct: 76 AFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
NAA LAL +GI MR ++A SC N +LD N ++
Sbjct: 136 NAAALALAEAGIPMRDLVA--SCAAGYLNGTPLLDLNYVE 173
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGL 62
+R+L ++L ++ ++GS +F G T V+A++YGP E + + + D+A V + S
Sbjct: 19 MRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVRCEY---SMA 75
Query: 63 SFVQDRLKES------------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+F + VI+ T E+A+LT L P++ + + +Q LQ G S CI
Sbjct: 76 AFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQ 149
NAA LAL +GI MR ++A SC N +LD N ++
Sbjct: 136 NAAALALAEAGIPMRDLVA--SCAAGYLNGTPLLDLNYVE 173
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-------KASVE 53
+ LR L++Q++ + +DGS G T V+ ++ GP E + Q K VE
Sbjct: 20 WNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRRQGGAAGAQRDGEAKIEVE 79
Query: 54 VIFRPKSGLSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQG 103
+ F +G S ++ + + K T E S L T +P +++ +++ L G
Sbjct: 80 IGF---AGFSGIERKRRGRGDKRTAEMQHTLVQAFASTLHTQRYPHSTISISLHILSQDG 136
Query: 104 SLLSCCINAACLALINSGISMRYILAA------VSCIINDKN-EVILDANQIQ 149
SLL+ C+NAA LAL+++GI M L A S ND+ + +LD N ++
Sbjct: 137 SLLAACLNAATLALVDAGIPMSDYLVACTAGSTASYSANDEQADPLLDLNNLE 189
>gi|320590667|gb|EFX03110.1| exosome complex subunit [Grosmannia clavigera kw1407]
Length = 246
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFV 65
EL+++L L R+DGS +S G V AS GP+EA+ + D A+++V+ RP +G+
Sbjct: 5 ELQARLATLPRADGSATYSHGGYTVTASANGPIEAQRRDEDPDAANIDVVVRPAAGVGGP 64
Query: 66 QDRLKESVIKSTCESALLTMLHPRTS--VILTIQ 97
+R E +++ T + +L PR + V+L IQ
Sbjct: 65 SERNHELILQKTLQDIVLVQEFPRCTIQVVLQIQ 98
>gi|146414860|ref|XP_001483400.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
gi|146391873|gb|EDK40031.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
Length = 221
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
+IL++ DGS + G T VV S+ GP+E K++ + ++S E+I RP G+S +++L E
Sbjct: 8 SILTKVDGSSQLTVGGTKVVVSVTGPIEPKLRHELPTQSSFEIIIRPAVGVSSTREKLME 67
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQEL-------QDQGSLLSCCINAACLALINSGISM 124
+ S ++ + +PR + + IQ L S LS NA ALI++ + +
Sbjct: 68 DKLLSLLQNVIARFQNPRQLIQIVIQFLITEPIPNHYTNSQLSAAANACYYALIDANVPL 127
Query: 125 RYILAAVSCIINDKNEVI 142
AAV I KNE+I
Sbjct: 128 LCSFAAVPIAIY-KNEII 144
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 14/139 (10%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK----IQKT-IIDKASVEVIFRPK 59
R + +++ ++S++ GS F G T VVA+ YGP+ Q+T I+D +V F P
Sbjct: 39 RSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILD---CDVKFSPF 95
Query: 60 SGLSFVQ------DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
SG+ Q +R +++S+ + + +P++ + + LQD G+ S INAA
Sbjct: 96 SGVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAFSAVINAA 155
Query: 114 CLALINSGISMRYILAAVS 132
+AL N+GI M +LAA S
Sbjct: 156 SMALANAGIEMFDLLAAAS 174
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 13/156 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASV--EVIFRP 58
+ LR++ + L + GS IF G T +VA++ GP E + K + D+A V VI P
Sbjct: 20 NELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSKELHDRAVVTCSVIVSP 79
Query: 59 KSGLSFVQDRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S S + R + ES+++ T E + T + PR+ + ++++ +Q G + +C +
Sbjct: 80 -SAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDISVEIVQADGPVRACVV 138
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
NA +ALI++G+ ++ L A D +++LD N
Sbjct: 139 NAVSMALIDAGLPIKDFLCACEVGYID-GQLLLDMN 173
>gi|448113411|ref|XP_004202344.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359465333|emb|CCE89038.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 77/138 (55%), Gaps = 17/138 (12%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L++ DGS G+T +VAS+ GP+E + ++ + + AS+E+I RP G+S +++L E
Sbjct: 9 LLNKVDGSAEVEIGRTKLVASVSGPIEPRSRQELPNSASLEIIVRPAVGVSTTREKLIED 68
Query: 73 VIKSTCESALLTMLHPRTSVILTIQEL--QDQGSL--------------LSCCINAACLA 116
++S ++ ++ +PR + + IQ L +D + L+ INA A
Sbjct: 69 KLRSLLQNVIIRHKYPRQLIQIVIQFLVTEDTNNYSITESQKQKLTSIELNAAINACYFA 128
Query: 117 LINSGISMRYILAAVSCI 134
L+++ I++ Y ++V CI
Sbjct: 129 LVDANIALYYSFSSV-CI 145
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 24/166 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
+ LR ++ +L + ++ DGS QG T V+A++YGP +A K+ + V +
Sbjct: 20 NELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKSSAEGVVVNCQYSMATF 79
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + + ++ +A+ T ++PR+ + + ++ LQ G
Sbjct: 80 STGERKNRPRG------DRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGGAY 133
Query: 107 SCCINAACLALINSGISMRYILAAVS---CIINDKNEVILDANQIQ 149
+NA+ LALI++GI ++ + + S ++ E +LD ++
Sbjct: 134 CASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVE 179
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 16/163 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI-FRPK 59
++ +R++K ++ +LSR+DGS G ++ ++YGP E ++ + KA +I +R
Sbjct: 21 INEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRR--LQKADSALIRYRYN 78
Query: 60 SGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
V+DR++ V + E ++T L+P + + + LQ +
Sbjct: 79 MAAFSVEDRIRPGPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAEVLQADAGTRTAA 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
INAA +AL ++GI M+ +++A C + +++LD N+ + N
Sbjct: 139 INAASIALADAGIPMKSLVSA--CAVGKVDGQLVLDLNKAEDN 179
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA------KIQKTII----DKA 50
D LR +K ++ +L R+DGS G V+A++YGP E ++ + II + A
Sbjct: 18 FDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAIIRYRYNMA 77
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S V R + G L + V + E +LT P++ + + ++ LQ + I
Sbjct: 78 SFSVEERRRPGPDRRSYELSK-VSREALEPVILTSYFPKSVIDIFVEVLQADAGTRTAGI 136
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL ++GI MR ++++ + D +++LD + + N
Sbjct: 137 NAASVALADAGIPMRSLVSSCAAGKVD-GQIVLDPMKDEDN 176
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 24 ELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 81
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E A++ L PRT++ + I+ LQ
Sbjct: 82 PFS----VEERKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQADAGTRV 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI M+ +++A C + +++LD N+ + N
Sbjct: 138 AGITAASLALADAGIPMKDLVSA--CAAGKIEGQIVLDLNKEEDN 180
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K ++ +L +DGS + G T ++A++YGP E + + ++A++ V +
Sbjct: 23 DELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYH--- 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES++L PR+S+ + ++ +Q D G+ L+
Sbjct: 80 MTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQADAGTRLAS 139
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LA++++GI ++ ++AAV+ D V+LD N+ +
Sbjct: 140 LM-AASLAVVDAGIPVKDVIAAVAVGKAD-GVVVLDLNEPE 178
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K ++ +L +DGS + G T ++A++YGP E + + ++A + V +
Sbjct: 23 DELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRAVLRVRY---H 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES++L PR+S+ + ++ +Q D G+ L+
Sbjct: 80 MTPFSTDERKSPAPSRREIELSKVIREALESSILVEQFPRSSIDIFMEVIQADAGTRLAS 139
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LA++++GI +R I+AAV+ D ++LD N+ +
Sbjct: 140 LM-AASLAVVDAGIPVRDIIAAVAVGKAD-GVIVLDLNEPE 178
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLA 80
Query: 61 GLSFVQDRLKESVIKS-------TCESA----------LLTMLHPRTSVILTIQELQDQG 103
G + V DR K+S S T E A + L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SLL+ C+NA LAL+++GI M +L A
Sbjct: 140 SLLAACLNACTLALVDAGIPMPGLLCA 166
>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
Length = 244
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+ + + I + +GS FS G + V+A+++ P EA K K+ +EVI RP+ G
Sbjct: 21 ISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNKC---KSYLEVILRPRIGQPQES 77
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
+L E I E + R + +T+Q + + G +L CINAA LALI+ GI M +
Sbjct: 78 HKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSEDGPILPVCINAAVLALIDLGIPMEF 137
Query: 127 ILAAVS 132
AVS
Sbjct: 138 FPLAVS 143
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 24/160 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKA--------- 50
D LR L+ + IL R+DGS G ++ ++YGP EA+I+K D+A
Sbjct: 14 FDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMA 73
Query: 51 --SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSL 105
SVE RP DR + K T E+ AL+ PR+ + + I+ L+ +G
Sbjct: 74 PFSVEERKRPGP------DRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 127
Query: 106 LSCCINAACLALINSGISMR-YILAAVSCIINDKNEVILD 144
I AA +AL ++GI MR ++A + +ND +V+LD
Sbjct: 128 RCAGITAASVALADAGIPMRDMVVACAAGKVND--QVVLD 165
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+K + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + +++ E A++ +PR+ + + ++ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLE 177
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D LR +K ++ +L ++GS + G T V+A+++GP EA + + D+A++ V +
Sbjct: 26 LDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLRVRYHMA 85
Query: 58 P------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
P KS ++ VI+ ES + + PRTS+ + I+ LQ G + +
Sbjct: 86 PFSTSERKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQADGGTRTAGLT 145
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA +AL ++GI M+ ++ V+ + N ++LD ++++
Sbjct: 146 AASVALADAGIPMKDLVIGVAVGKIEGN-LVLDISELEDE 184
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFRP 58
+ LR + ++N S GS QG T V+ + GP+E + + + + +A++EV
Sbjct: 19 WNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRATIEVNIAV 78
Query: 59 KSGLSFVQ--DRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S S ++ RLK ++ ++ T E +++ L+PRT + + + L G +L+
Sbjct: 79 AS-FSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLAT 137
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
INA LALI++GI+M +AAV+ ++++ +LD N ++ N
Sbjct: 138 MINATTLALIDAGIAMYDYVAAVAAGLHNETP-LLDLNTLEEN 179
>gi|448517135|ref|XP_003867718.1| hypothetical protein CORT_0B05720 [Candida orthopsilosis Co 90-125]
gi|380352057|emb|CCG22281.1| hypothetical protein CORT_0B05720 [Candida orthopsilosis]
Length = 222
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
K ++LS +DGS + T + S+ GP+E K+++ + +AS+E+I RP GLS +
Sbjct: 3 FKVNTSVLSNADGSAELTINGTKCLVSVSGPIEPKVRQELPTQASLEIIVRPAHGLSTTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL-QDQGSLLSC-----CINAACLALINS 120
++L E ++S +S ++ +PR + + +Q L D+ +C IN ALI++
Sbjct: 63 EKLLEDKLRSLLQSLIIRYKYPRQLIQIVVQFLVVDEEPEYTCNELNAAINGCYFALIDA 122
Query: 121 GISMRYILAAVSCIINDKN 139
+++ A+ + +N N
Sbjct: 123 DLALYSSFASTNVCLNLGN 141
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVISVVVNLA 80
Query: 61 GLSFVQDRLKES-----------------VIKSTCESALLTMLHPRTSVILTIQELQDQG 103
G + V DR K+S +I+ + + L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SL + C+NA LAL+++GI M +L A
Sbjct: 140 SLFAACLNACTLALVDAGIPMPGLLCA 166
>gi|302925936|ref|XP_003054194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735135|gb|EEU48481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 250
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFV 65
E ++L+ L ++DGS FS G +VA++ GPVEA+ + +A V+VI RP +G+
Sbjct: 6 EPTAELSHLPKADGSATFSYGGYTIVAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGT 65
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQ--ELQDQG-------------SLLSCCI 110
++R ES++++ + +PR + +T+Q E + ++ +
Sbjct: 66 RERQLESILQAALRQLIPVRDYPRCVIQITLQVAETPENAYVNTKLSQSQLNLPIIPALL 125
Query: 111 NAACLALINSGISMRYILAAVSCIINDKN--EVILDANQIQ 149
++A L+L+++ IS++ I AA I ++ ++I+D ++
Sbjct: 126 HSAILSLLSAAISLKAIGAATVLAIPEEEGKDIIVDPTAVE 166
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASV--EVIFRPKSGLSFV 65
S+ + +DGS GQT ++A + GP E + Q D V E P SG
Sbjct: 28 SRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERK 87
Query: 66 QDRLKES-------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
+ R E +K E A++ L+PRT + + + +Q G +L INAA LAL+
Sbjct: 88 KRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALV 147
Query: 119 NSGISMRYILAAVSCIINDKNEVILDANQIQ 149
++G++M ++ A S D V +D N ++
Sbjct: 148 DAGVAMSDLVVACSAGYLDGMPV-MDLNYVE 177
>gi|406694098|gb|EKC97434.1| hypothetical protein A1Q2_08357 [Trichosporon asahii var. asahii
CBS 8904]
Length = 280
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
DSLR L+ +L LSR+DGS FS G + +AS GP E ++++ + +A++E++ RP G
Sbjct: 9 DSLRPLQVRLGELSRADGSGRFSFGPSAALASFTGPTEIRLREEQLSQATLELVHRPLEG 68
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
++ VQ R E + + E L PR+ + +Q L
Sbjct: 69 VAGVQSRALEDSLSAVFEPLLNLRAFPRSLCQIVVQGL 106
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+K + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A+L +PR+ + + I+ +Q GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASL 139
Query: 111 NAACLALINSGISMR 125
AA LAL ++GI MR
Sbjct: 140 TAASLALADAGIYMR 154
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R +K + +LSR+DGS G +++++YGP E ++ + + VI +
Sbjct: 22 DEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRR--MQRPDAAVIRYKYNM 79
Query: 62 LSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
SF V+DR + V E ++T +P T + + + L+ + I
Sbjct: 80 ASFSVEDRQRPGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVLEADAGTRTAAI 139
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
NAA LALI++GI ++ +++A C + +++LD N+ + N
Sbjct: 140 NAATLALIDAGIPLKSLVSA--CAVGKVDGQLVLDLNKKEDN 179
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIFR 57
LR QL+ SDGS +QG T V S++GP E A + ++ V +
Sbjct: 24 LRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGLASHDRAVVSVEVGVVPWA 83
Query: 58 PKSGLSFVQD--RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+G + RL+E + I+ T E ++T L+PR+ + + +Q L G +L INA
Sbjct: 84 AGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGGILPTSINAT 143
Query: 114 CLALINSGISMRYILAAVS 132
LALI++GIS+ ++++S
Sbjct: 144 TLALIDAGISLLDYVSSIS 162
>gi|401884501|gb|EJT48660.1| hypothetical protein A1Q1_02387 [Trichosporon asahii var. asahii
CBS 2479]
Length = 280
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
DSLR L+ +L LSR+DGS FS G + +AS GP E ++++ + +A++E++ RP G
Sbjct: 9 DSLRPLQVRLGELSRADGSGRFSFGPSAALASFTGPTEIRLREEQLSQATLELVHRPLEG 68
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
++ VQ R E + + E L PR+ + +Q L
Sbjct: 69 VAGVQSRALEDSLSAVFEPLLNLRAFPRSLCQIVVQGL 106
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQL---NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIF 56
D R +K + NI + +DG + G T +++ + GP E K DK S+ +V
Sbjct: 20 DEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELKKSD---DKCSIKCDVFL 76
Query: 57 RPKSGLSFVQDRLKESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
P + + + K+++ I++ CE+ +L L+ + + + + ++ G +
Sbjct: 77 SPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAA 136
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GI+++Y ++A S ++ +N++I+D NQ++ N
Sbjct: 137 INTCILALIDAGIAIKYFISACS-VLYLQNQIIVDGNQLEIN 177
>gi|390598731|gb|EIN08128.1| hypothetical protein PUNSTDRAFT_102893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 276
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 17/129 (13%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L R+DGS F+ G T +AS+ GP+E + Q + +A+ EVI RP SG++ + + +
Sbjct: 11 LDRADGSARFAFGLTKCLASVSGPIEVRPQNELPTQAAFEVIVRPLSGVAGTRAKSIGTT 70
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQ----------------DQGSLLSCCINAACLAL 117
++ +++ HPRT + L +Q L D S L+ INA+ +AL
Sbjct: 71 LQFLLAPSIILTAHPRTLLQLVVQALNEDSPPTPSLCRMTFLPDTMSGLAAMINASTIAL 130
Query: 118 INSG-ISMR 125
+N+G I MR
Sbjct: 131 LNAGSIQMR 139
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+D +R + ++ +LSR+DGS G V+A++YGP E ++ + + V +R
Sbjct: 21 VDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRR-LQRPSEALVRYRYNM 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V+DR++ V E+ ++ +P + + + LQ + I
Sbjct: 80 AAFSVEDRIRPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQADAGTRTAAI 139
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
NAA LAL+++GI M+ ++AA C + ++++D N+ + N
Sbjct: 140 NAATLALVDAGIPMKGLVAA--CAVGKVDGQLVIDLNKPEDN 179
>gi|342879541|gb|EGU80786.1| hypothetical protein FOXB_08653 [Fusarium oxysporum Fo5176]
Length = 250
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M L E ++L+ L+++DGS FS G V+A++ GPVEA+ + +A V+VI RP +
Sbjct: 1 MAPLAEPAAELSHLAKADGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSL 105
G+ ++R ES++++ + +PR + +T+Q + Q +
Sbjct: 61 GVGGTRERQLESIMQAAIRQLIPVRDYPRCVIQITLQVAETPENAYVNAKLVQAQLNLPI 120
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKN 139
+ +++A L L+++ I ++ I AA I ++
Sbjct: 121 IPALLHSAILGLLSAAIPLKSIGAATLLAIPEEE 154
>gi|260948598|ref|XP_002618596.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC
42720]
gi|238848468|gb|EEQ37932.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC
42720]
Length = 239
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 58/90 (64%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
+L+ LS+ DGS + G T VV S+ GP+E K ++ + +AS+E++ RP GL+ ++++
Sbjct: 8 ELSPLSQVDGSARLTAGNTKVVVSVTGPIEPKPRQELPTQASLEIVVRPSRGLAATKEKV 67
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQEL 99
E +++S +SA++ +PR + + +Q L
Sbjct: 68 LEDLLRSVLQSAIVRYKYPRQLIQVVVQFL 97
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLA 80
Query: 61 GLSFVQDRLKESVIKS-------TCESALL----------TMLHPRTSVILTIQELQDQG 103
G + V DR K+S S T E A L L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SL + C+NA LAL+++GI M +L A
Sbjct: 140 SLFAACLNACTLALVDAGIPMPGLLCA 166
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLA 80
Query: 61 GLSFVQDRLKESVIKS-------TCESALL----------TMLHPRTSVILTIQELQDQG 103
G + V DR K+S S T E A L L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SL + C+NA LAL+++GI M +L A
Sbjct: 140 SLFAACLNACTLALVDAGIPMPGLLCA 166
>gi|345561898|gb|EGX44970.1| hypothetical protein AOL_s00173g71 [Arthrobotrys oligospora ATCC
24927]
Length = 267
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 7/128 (5%)
Query: 11 LNILSRSDGSVIFS--QGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
LN L +SDGS ++ +T ++ S+ GP+E + + + + A++EVI +P G++ V++
Sbjct: 12 LNPLPQSDGSCQYTCPTSRTTILTSVNGPLEVRPKDELPNHATIEVIVKPGIGVAGVRET 71
Query: 69 LKESVIKSTCESALLTMLHPRT--SVILTIQELQDQGS---LLSCCINAACLALINSGIS 123
S+I ST +S +LT HPRT ++ I + +D S LL+ +N L+L+ +GI
Sbjct: 72 RLSSLIHSTLQSLILTNHHPRTLIQIVAQIVQAEDHTSLPLLLTPLLNCTILSLLIAGIP 131
Query: 124 MRYILAAV 131
MR + +V
Sbjct: 132 MRTVGWSV 139
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-----------------IQ 43
+ LR L++Q++ S GS S G T ++ S++GP E K +
Sbjct: 21 WNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVD 80
Query: 44 KTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
I A V+ R ++G S Q ++++S +S L T L+P +++ + + L G
Sbjct: 81 VNIAGFAGVD--RRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG 138
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
SLL+ +NA LAL+++GI M +L+A + ++ + D
Sbjct: 139 SLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTLRD 179
>gi|254571745|ref|XP_002492982.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238032780|emb|CAY70803.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328353004|emb|CCA39402.1| Polyribonucleotide nucleotidyltransferase [Komagataella pastoris
CBS 7435]
Length = 221
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
Q ++L++ DGS S G+ V+ S+ GP+EAK ++ + + ++EV RP+ G+ +++
Sbjct: 7 QTSLLNKVDGSSTISIGEVKVICSVTGPIEAKPRQELPTQCAIEVNIRPEVGVGSTREKN 66
Query: 70 KESVIKSTCESALLTMLHPRT------SVILTIQELQDQGSLLSCCINAACLALINSGIS 123
E ++ + +PR +I Q ++ L CIN A LALI++ IS
Sbjct: 67 MEDKLRVVLNGTINKFQYPRQLIQVHLHIISKSQATENNLKDLHACINGAYLALIDANIS 126
Query: 124 MRYILAAVSCIINDKNEVILD--ANQIQS 150
+ + +IND + +I + + QIQS
Sbjct: 127 LLSSFLSTYAVIND-DRLIFNPTSEQIQS 154
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R +K ++ +LSR+DGS G+ ++ ++GP EA +++ +A VI +
Sbjct: 24 DEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRS--QRADSAVIRYRYNM 81
Query: 62 LSF-VQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
SF V+DR + V + E ++ L P+T++ + ++ LQ + I
Sbjct: 82 ASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAI 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQSN 151
NA+ +AL ++GI M+ ++ SC + +++LD N+ + N
Sbjct: 142 NASSIALADAGIPMKGLI--TSCAFGKVDGKIVLDLNKEEDN 181
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA---KIQKTIIDKASVEVIFRPKS 60
LR +K ++ +L R+DGS G ++A++YGP EA +Q+ D+A V + S
Sbjct: 25 LRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQEA--DRAIVRARY---S 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K VI S + +PRTS+ + I+ LQ
Sbjct: 80 MAPFSVDERKRPGPDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIEVLQADAGTRVAG 139
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNE-VILDANQIQSN 151
I A LAL ++GI MR ++ V C ++ V+LD N+ + N
Sbjct: 140 ITVASLALADAGIPMRDLI--VGCAAGKVDDVVVLDLNKEEDN 180
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-----------------IQ 43
+ LR L++Q++ S GS S G T ++ S++GP E K +
Sbjct: 21 WNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVD 80
Query: 44 KTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
I A V+ R ++G S Q ++++S +S L T L+P +++ + + L G
Sbjct: 81 VNIAGFAGVD--RRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG 138
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SLL+ +NA LAL+++GI M +L+A
Sbjct: 139 SLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRP 58
+ LR + ++N S SDGS QG T ++ + GP+E ++ +T KAS+E+
Sbjct: 19 WNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKASIEINL-S 77
Query: 59 KSGLSFVQ--DRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ S ++ RLK ++ ++ T E +++ L+PRT + + + L G LL+
Sbjct: 78 VANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHVLCQDGGLLAG 137
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA LALI++GI+M ++A++ + D+ +LD N ++ N
Sbjct: 138 MTNAITLALIDAGIAMYDYVSAINAGLYDQTP-LLDLNTLEEN 179
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 25/163 (15%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--------AKIQKTIIDKASVEV-- 54
R ++++L + R+DGS QG T V+ +YGP E AK +++ KA V
Sbjct: 29 RRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAASLVKKAIVHCEC 88
Query: 55 -----------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
+ R S V+ S IK ES + T L+P++ + + Q LQ G
Sbjct: 89 TQASFATSDRKVSRNASDRKNVE---MSSAIKQIFESCIFTNLYPQSQISIYPQVLQADG 145
Query: 104 SLLSCCINAACLALINSGISMR-YILAAVSCIINDKNEVILDA 145
L+ INA LAL+++GI++ +++A+ + + K+ L+A
Sbjct: 146 GELAASINATSLALMDAGIALNDFVVASTAGFVQQKSLCDLNA 188
>gi|302306331|ref|NP_982576.2| AAR035Cp [Ashbya gossypii ATCC 10895]
gi|299788466|gb|AAS50400.2| AAR035Cp [Ashbya gossypii ATCC 10895]
gi|374105775|gb|AEY94686.1| FAAR035Cp [Ashbya gossypii FDAG1]
Length = 214
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L ILS DGS FS + + GP+E K ++ I +++VI RP +G +++L
Sbjct: 3 LGILSHVDGSSKFSTAAASAICGVSGPIEPKARQEIPQHLALDVIVRPAAGPPTTREKLL 62
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL----LSCCINAACLALINSGISMRY 126
E +++T + T LHPR +T+Q L+ G L+ +NAA LAL+++G+ +R
Sbjct: 63 EDKVRATITPVVETFLHPRQLCQITLQVLKSVGQHEHMELAVALNAAYLALLDAGVPLRA 122
Query: 127 ILAAVSCIINDKNEV 141
+L+AVS ++ + E+
Sbjct: 123 VLSAVSIAVSTEGEL 137
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 1 MDSLRELKSQLNILSRSD-GSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFRP 58
+ LR + ++N S GS QG T V+ + GP E + + + + +A++EV
Sbjct: 19 WNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRATIEVNIAV 78
Query: 59 KSGLSFVQ--DRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S S ++ RLK ++ ++ T E +++ L+PRT + + + L G +L+
Sbjct: 79 AS-FSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLAT 137
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
INA LALI++GI+M +AAV+ ++++ +LD N ++ N
Sbjct: 138 MINATTLALIDAGIAMYDYVAAVAAGLHNETP-LLDLNTLEEN 179
>gi|171694984|ref|XP_001912416.1| hypothetical protein [Podospora anserina S mat+]
gi|170947734|emb|CAP59897.1| unnamed protein product [Podospora anserina S mat+]
Length = 262
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 15/130 (11%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L +L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +G+ ++R
Sbjct: 20 LGVLPRADGSAKYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHL 79
Query: 71 ESVIKSTCESALLTMLHPRT--SVILTIQELQDQG-------------SLLSCCINAACL 115
ES+++S+ +L PR+ ++L +++ + S++ A L
Sbjct: 80 ESILQSSLSQIILVKNFPRSLIQIVLQVEDSPENDYVNTKLVQASLNFSIMPALFQTAVL 139
Query: 116 ALINSGISMR 125
AL+++G+ +R
Sbjct: 140 ALLSAGVPIR 149
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 18/164 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDKA 50
D LR LK + +L R+DGS G V+A++YGP E +++ + + A
Sbjct: 32 FDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILRCRYNMA 91
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLS 107
V R + G DR + K T E+ A+ PR+++ + I+ +Q +G
Sbjct: 92 PFSVDDRKRPG----PDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGGTRC 147
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA +AL ++GI MR +++A + D +VI+D ++ +
Sbjct: 148 AGITAASVALADAGIPMRDMVSACAAGKAD-GQVIMDLSEWEDK 190
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP------VEAKIQKTIIDKASVEVIFR 57
LR L+ QL L ++DGS +F G T V+A+ YGP +A + I+ E F
Sbjct: 19 LRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQALHNRAIVKCDYAEAAFS 78
Query: 58 PKSGLSFVQDRLKE-----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ ++ S I+S E +L L PR + +++Q LQ G +L CINA
Sbjct: 79 TGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGVSVQVLQADGGVLGACINA 138
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LAL N+GI +R ++AA S + +LD N ++S
Sbjct: 139 AMLALANAGIPLRDMIAATSAGYLESTP-LLDLNFLEST 176
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFR-- 57
D LR ++ ++ +L ++GS + G T V+A++YGP E I K + D+A + V +
Sbjct: 22 DELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREV-IPKAVQLPDRAVLRVRYHMA 80
Query: 58 P------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
P KS ++ VI+ ES + PR S+ + I+ +Q G + +
Sbjct: 81 PFSTTEHKSPAPTRREIELSKVIREALESVVFADQFPRASIDVFIEVIQADGGTRTAGLT 140
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++GI M+ ++A V + + ++LD N+++
Sbjct: 141 AASLALADAGIPMKDLVAGV-AVGKVEGVLVLDINELEDE 179
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID---KASVEVIFRP 58
D LR +K++L + ++DGS QG T V+A + GP ++ + S E I+
Sbjct: 38 DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97
Query: 59 -----KSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
+ S + +L E + I T ES ++ L R+++ L +Q LQ G +L+ IN
Sbjct: 98 FSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAIN 157
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
AA LA++++G+ M+ L A + + + +LD N ++
Sbjct: 158 AASLAMMDAGVPMKDFLCACNAGVLE-GVAVLDTNHSEA 195
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKA--------- 50
D LR LK + IL R+DGS G ++ ++YGP EA+I+K D+A
Sbjct: 23 FDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMA 82
Query: 51 --SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSL 105
SVE RP DR + K T E+ AL+ PR+ + + I+ L+ +G
Sbjct: 83 PFSVEERKRPGP------DRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 136
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQ 147
I AA +AL ++GI MR ++ V+C ++V+LD ++
Sbjct: 137 RCAGITAASVALADAGIPMRDMV--VACAAGKVGDQVVLDLSE 177
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 14/160 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKS 60
+ +R L ++ I +R+DGS + QG T + ++YGP E A Q+ + D+A V + ++
Sbjct: 20 NEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIVNCEYS-QA 78
Query: 61 GLSFVQDRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
S DR S+IK ES + L PR+ + + +Q LQ G L +
Sbjct: 79 AFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVLQADGGLKAAA 138
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+NAA LA+I++G+ MR + A S + +LD NQ++
Sbjct: 139 LNAATLAVIDAGLPMRDFICACSATFIE-GVPLLDMNQME 177
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R +K ++ +LSR+DGS G+ V+ ++GP EA +++ +A VI +
Sbjct: 22 DEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRS--QRADTAVIRYKYNM 79
Query: 62 LSF-VQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
SF +DR + V + E ++ L P+T++ + ++ LQ + I
Sbjct: 80 ASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQADAGTRTAAI 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQSN 151
NA+ +AL ++GI M+ ++ SC + +++LD N+ + N
Sbjct: 140 NASSIALADAGIPMKGLV--TSCAFGKVDGQIVLDLNKEEDN 179
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR-------PKSGLSFVQDRL 69
+DGS G T +V + GP E + K S+++ + ++ R+
Sbjct: 33 ADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSLDIKLHVSPFSTTERRKVTRNDRRI 92
Query: 70 KE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI 127
+E +++K+T E ++ +PRT + + ++ L G LL+ C NA LAL+++GI++
Sbjct: 93 QELSTILKNTFEQVVILKNYPRTIIEVNVRVLAQDGGLLAACCNAITLALVDAGIALYDY 152
Query: 128 LAAVSCIINDKNEVILDANQIQ 149
++AVS + D N+++LD N+++
Sbjct: 153 ISAVSAGVFD-NQILLDLNRLE 173
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-----------------IQ 43
+ LR L++Q++ S GS S G T ++ S++GP E K +
Sbjct: 21 WNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVD 80
Query: 44 KTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
+ A V+ R ++G S Q ++++S +S L T L+P +++ + + L G
Sbjct: 81 VNVAGFAGVD--RRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG 138
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SLL+ +NA LAL+++GI M +L+A
Sbjct: 139 SLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDKA 50
D LR LK + +L R+DGS G V+A++YGP E +++ + + A
Sbjct: 32 FDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILRCRYNMA 91
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLS 107
V R + G DR + K T E+ A+ PR+++ + I+ LQ +G
Sbjct: 92 PFSVDDRKRPG----PDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGGTRC 147
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
I AA +AL ++GI MR +++A + D +VI+D ++
Sbjct: 148 AGITAASVALADAGIPMRDMVSACAAGKAD-GQVIMDLSE 186
>gi|408391376|gb|EKJ70754.1| hypothetical protein FPSE_09047 [Fusarium pseudograminearum CS3096]
Length = 250
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M E ++++ L++SDGS FS G V+A++ GPVEA+ + +A V+VI RP +
Sbjct: 1 MAPFAEPVAEISHLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSL 105
G+ ++R ES++++ + +PR + +T+Q + Q +
Sbjct: 61 GVGGTRERQLESIMQAALRQIIPVRDYPRCVIQITLQVAETPENAYVNAKVVQAQLNLPI 120
Query: 106 LSCCINAACLALINSGISMRYILAA--VSCIINDKNEVILDANQI 148
+ +++A L L+++ I ++ I AA ++ + ++I+D + +
Sbjct: 121 IPALLHSAILGLLSAAIPLKTIGAATLIAVPEGEGEDIIVDPSAV 165
>gi|353234637|emb|CCA66660.1| probable exosome complex exonuclease rrp41 [Piriformospora indica
DSM 11827]
Length = 277
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKA--SVEVIFRPKSGLSFVQDRLKE--- 71
DGS I G TVV A ++GP E +++ I D+A SV+V P SG + R +
Sbjct: 54 DGSAIVGHGLTVVSARVFGPREPLLRREAIHDRAKLSVQVAMLPFSGGMAGRRRGRGDKR 113
Query: 72 -----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
+ I+ST ES + T L+PR+ + + ++ Q G L IN+ LAL ++G++M
Sbjct: 114 LLELGAAIESTFESVVQTGLYPRSQIDIVVEIHQQDGGTLQAAINSVTLALTDAGVAMYD 173
Query: 127 ILAAVSCIINDKNEVILDANQIQSN 151
+ AVS ++ V+LD + N
Sbjct: 174 QVVAVSAGLH-STAVLLDLTHHEEN 197
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR--P 58
+ LR ++ L +L ++GS + G T +A++YGP EA + ++ D+A + V + P
Sbjct: 20 EELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAP 79
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
KS ++ VI+ ES + T PR S+ + I+ LQ G + + A
Sbjct: 80 FSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQADGGTRTTGLTA 139
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LAL ++GI MR ++ V+ D ++LD N+++
Sbjct: 140 ASLALADAGIPMRDLVIGVAVGKVD-GVLVLDINELE 175
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR--P 58
+ LR ++ L +L ++GS + G T +A++YGP EA + ++ D+A + V + P
Sbjct: 20 EELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAP 79
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
KS ++ VI+ ES + T PR S+ + I+ LQ G + + A
Sbjct: 80 FSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQADGGTRTTGLTA 139
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LAL ++GI MR ++ V+ D ++LD N+++
Sbjct: 140 ASLALADAGIPMRDLVIGVAVGKVD-GVLVLDINELEDK 177
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%), Gaps = 22/162 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIF------ 56
LR+++ +L + S+ DGS G T V+A++YGP + + + K ++D A + +
Sbjct: 20 LRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVINCQYSSAVFS 79
Query: 57 ------RPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLS 107
RP+ D+ + C++ A+ T L+P++ + + ++ LQ G S
Sbjct: 80 TEERKKRPRG------DKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQSDGGSFS 133
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+N + LALI++GI ++ + + + + ++N ++D ++
Sbjct: 134 AAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLE 175
>gi|403214056|emb|CCK68557.1| hypothetical protein KNAG_0B01100 [Kazachstania naganishii CBS
8797]
Length = 222
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRL 69
Q L + DGS + T ++ S+ GP+E K ++ + + ++EVI RP G+ ++
Sbjct: 4 QTGYLDQVDGSAHYKTDTTALLCSVTGPIEPKPRQELPTRMALEVIVRPALGVPLTREVE 63
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQELQ--------DQGSLLSCCINAACLALINSG 121
+ + S S ++ +PR +T Q L+ D L++ C+NAA LALI++G
Sbjct: 64 IQDKLNSILGSIIVVHRYPRQLCQITFQILESGEDPHLFDSKELVA-CVNAATLALIDAG 122
Query: 122 ISMRYILAAVSCII 135
I+M + A+ C+I
Sbjct: 123 IAMNSL--AIGCVI 134
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLA 80
Query: 61 GLSFVQDRLKESVIKS-------TCESA----------LLTMLHPRTSVILTIQELQDQG 103
G + V DR K+S S T E A + L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISMRYILAA 130
SL + C+NA LAL+++GI M +L A
Sbjct: 140 SLFAACLNACTLALVDAGIPMPGLLCA 166
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--------------IQKTI 46
+ LR L +Q++ S GS S G T ++ S++GP E K I +
Sbjct: 21 WNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAIVEVD 80
Query: 47 IDKASVEVIFRPK-SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
++ A + R + +G S Q ++++S +S L T L+P +++ + + L GSL
Sbjct: 81 VNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSL 140
Query: 106 LSCCINAACLALINSGISMRYILAA 130
L+ +NA LAL+++GI M +L+A
Sbjct: 141 LAAAVNACTLALVDAGIPMPGLLSA 165
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDKAS 51
+ LR +K + +L R+DGS G ++ ++YGP E+ I++ + + A
Sbjct: 14 NELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAP 73
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLSC 108
V R + G DR + K T ++ AL+ +PR+ V + I+ ++ +G
Sbjct: 74 FSVDDRKRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQ 149
I AA +AL+++GI M+ I+ V C N E+ILD ++++
Sbjct: 130 GITAASVALVDAGIPMKDIV--VGCAAGKVNDEIILDLSEVE 169
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR--P 58
D LR ++ + +L ++GS + G T +A++YGP EA + ++ D+A + V + P
Sbjct: 21 DELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLRVRYHMAP 80
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
KS ++ VI+ ES + T +PR S+ + I+ LQ G + + A
Sbjct: 81 FSTSERKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQADGGTRTAGLTA 140
Query: 113 ACLALINSGISMR 125
A LAL ++GI M+
Sbjct: 141 ASLALADAGIPMK 153
>gi|393215976|gb|EJD01467.1| hypothetical protein FOMMEDRAFT_69260, partial [Fomitiporia
mediterranea MF3/22]
Length = 191
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 23/151 (15%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
R++ + LS DGS F GQT +AS+ GP+E ++ KA+ EVI RP +GL
Sbjct: 1 RDVVISFDGLSGVDGSARFGFGQTKALASVSGPIEVRLAVEQASKATFEVIARPLAGLPG 60
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQ----------------------ELQDQ 102
+ + S ++S +++ +PRT V L Q +
Sbjct: 61 TESKALASALRSALLPSMILTNNPRTLVQLVAQSLTPSTTTTSNRSGQLGSVNSKSFRTS 120
Query: 103 GSLLSCCINAACLALIN-SGISMRYILAAVS 132
+L++ INAA LAL+N S I +R ++ A S
Sbjct: 121 PALVAAHINAASLALLNASSIPLRGVVCAAS 151
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 25/171 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---------AKIQKTIIDKASVEV 54
LR+++ ++ + ++DGS QG T ++ ++YGP + +K+ K I++
Sbjct: 23 LRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTSKVTKGIVNCQYSMA 82
Query: 55 IFRPKSGLSFVQDR------LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+F SG + R K +K E+ + L+PR+ + + ++ LQ GS
Sbjct: 83 VFSLSSGERKRKPRGDRKSQEKSLQLKHAMEAIIHLELYPRSQIDIYVEVLQVDGSEYCA 142
Query: 109 CINAACLALINSGISMR-YILAAVSCIIND---KNE------VILDANQIQ 149
INA+ LALI++GI ++ Y + +IN NE +LDAN I+
Sbjct: 143 SINASTLALIDAGIPIKNYAVGCTVTLINSSSLDNEDSSLGTGVLDANYIE 193
>gi|367052063|ref|XP_003656410.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
gi|347003675|gb|AEO70074.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
Length = 253
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ L IL R+DGS +S V S+ GP+EA+ + +A V+VI RP +G+ ++
Sbjct: 8 EAALGILPRADGSAKYSHAGYTVTGSVNGPIEAQRRDEHAYEAHVDVIVRPAAGVGGTRE 67
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQDQG-------------SLLSCCINA 112
R ES+++S+ +L PR+ ++L ++ + S++ +
Sbjct: 68 RHLESILQSSLSQLILVKDFPRSLIQIVLQVENSPENDYVDTKLVQASLNFSIMPALLQT 127
Query: 113 ACLALINSGISMR 125
A LAL+++ + MR
Sbjct: 128 AVLALLSAAVPMR 140
>gi|409048701|gb|EKM58179.1| hypothetical protein PHACADRAFT_88763 [Phanerochaete carnosa
HHB-10118-sp]
Length = 290
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR + + L R DGS F GQT +AS+ GP+E + + +A++E+ RP +
Sbjct: 14 DELRPVTIKYEGLDRVDGSAKFGFGQTQALASLSGPIEIRPNLELPSQATLEIHIRPLAS 73
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL--------------QDQGSLLS 107
+ R + +K+ +LL HPRT V + Q L SL++
Sbjct: 74 VPGTDSRALAATLKAVLSPSLLLSHHPRTLVQIVGQALCGSDSGSGLGSTGRGWNASLVA 133
Query: 108 CCINAACLALINSG-ISMRYILAAVSC----IINDKNEVIL 143
+NA +LIN+G + ++ ++ A S +ND +L
Sbjct: 134 SLVNACSASLINAGSVPIKGVVCAASVGRIPDLNDSGSYVL 174
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-------------IQKTIID 48
+ LR ++ +L + ++ DGS QG T V+A++YGP + + Q ++
Sbjct: 20 NELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVVNCQYSMAT 79
Query: 49 KASVEVIFRPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
++ E RP+ DR + + ++ +A+ T ++PR+ + + ++ LQ G
Sbjct: 80 FSTGERKNRPRG------DRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGGA 133
Query: 106 LSCCINAACLALINSGISMRYILAAVS---CIINDKNEVILDANQIQ 149
+NA+ LALI++GI ++ + + S ++ E +LD ++
Sbjct: 134 YCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVE 180
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T A + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSET----AGAAAQKKKST 76
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLH----PRTSVILTIQELQDQGSLLSCCINAACLA 116
S DR + + ++ A +H PR+++ + + L GSL + C+NA LA
Sbjct: 77 TGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSLFAACLNACTLA 136
Query: 117 LINSGISMRYILAA 130
L+++GI M +L A
Sbjct: 137 LVDAGIPMPGLLCA 150
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 24/164 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDKAS 51
+ LR +K + +L R+DGS G ++ ++YGP E+ I++ + + A
Sbjct: 13 NELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAP 72
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLSC 108
V R + G DR + K T ++ AL+ +PR+ V + I+ ++ +G
Sbjct: 73 FSVDDRKRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 128
Query: 109 CINAACLALINSGISMRYILAAVSCI---INDKNEVILDANQIQ 149
I AA +AL+++GI M+ I+ V C +NDK ++LD ++++
Sbjct: 129 GITAASVALVDAGIPMKDIV--VGCAAGKVNDK--IVLDLSEVE 168
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPK 59
D +R + ++ I +GS G T V+ + GP E I+ K D+ V V
Sbjct: 19 WDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIA 78
Query: 60 SGLSF-VQDRLKES--------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S + V+ R K +++T E + T L+PR+ + + + LQD G++++ CI
Sbjct: 79 SFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCI 138
Query: 111 NAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
NA LALI++GI ++ ++ + + I+ +++++LD N ++
Sbjct: 139 NATTLALIDAGIPVKDFVCCSTAGIV--ESDMLLDLNSLE 176
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 24/164 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDKAS 51
+ LR +K + +L R+DGS G ++ ++YGP E+ I++ + + A
Sbjct: 14 NELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAP 73
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSLLSC 108
V R + G DR + K T ++ AL+ +PR+ V + I+ ++ +G
Sbjct: 74 FSVDDRKRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129
Query: 109 CINAACLALINSGISMRYILAAVSCI---INDKNEVILDANQIQ 149
I AA +AL+++GI M+ I+ V C +NDK ++LD ++++
Sbjct: 130 GITAASVALVDAGIPMKDIV--VGCAAGKVNDK--IVLDLSEVE 169
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L++Q++ S GS S G T V+ +++GP E K +T +V + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLA 80
Query: 61 GLSFVQDRLKESVIKS-------TCESALL----------TMLHPRTSVILTIQELQDQG 103
G + V DR K+S S T E A L L+PR+++ + + L G
Sbjct: 81 GFANV-DRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVSVLSSDG 139
Query: 104 SLLSCCINAACLALINSGISM 124
SL + C+NA LAL+++GI M
Sbjct: 140 SLFAACLNACTLALVDAGIPM 160
>gi|393242627|gb|EJD50144.1| hypothetical protein AURDEDRAFT_58674 [Auricularia delicata
TFB-10046 SS5]
Length = 233
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
DS R + +L+ L R DGS FS G T +AS+ GPVEA+ +A++EV P G
Sbjct: 11 DSFRHISIKLDELERVDGSARFSLGDTAALASVSGPVEARSAIEQASRAALEVNILPLHG 70
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG--------SLLSCCINAA 113
+ + R + I + +LL +PR + +T+Q L S + INA+
Sbjct: 71 VPATESRALATAISALLAPSLLLHQNPRALIQITVQTLSPPPSSTRRVPTSQTAVLINAS 130
Query: 114 CLALINSG-ISMRYILAAVSCIINDKNEVILD 144
LAL+ + +SM ++ A+S E +D
Sbjct: 131 TLALLRAASVSMCTVICAISVAKRPSGEFFVD 162
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 23/163 (14%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE----------AKIQKTIIDKASVEVIF 56
LKS N L DGS I S G T V +S+ GP E + ++ + S++V
Sbjct: 30 LKSSPNSL---DGSSIVSHGLTKVTSSVSGPKEITSSSSSNHKSNLKSHTNNVGSIQVYV 86
Query: 57 R-------PKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+ LS V RL + I++T ES ++ L+PR+ + + I+ LQ+ G LL
Sbjct: 87 NMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIMLKLYPRSLIEIFIEVLQEDGGLLQ 146
Query: 108 CCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
INA L+LI SGIS++ YILA +++ N +LD ++
Sbjct: 147 AAINATSLSLIASGISIQDYILAISIGSLSNPNLPLLDVTNLE 189
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 25/171 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---------AKIQKTIIDKASVEV 54
LR+++ ++ + ++DGS G T ++ ++YGP + +KI K I++
Sbjct: 39 LRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITKGIVNCQYSMA 98
Query: 55 IFRPKSGLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+F SG + R +K E+ + L+PR+ + + ++ LQ GS
Sbjct: 99 VFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCA 158
Query: 109 CINAACLALINSGISMR-YILAAVSCIIN-----DKNEV----ILDANQIQ 149
+NAA LALI++GI ++ Y + +IN D++ +LDAN ++
Sbjct: 159 SVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKGVLDANYVE 209
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPK 59
D +R + + I +GS G T V+ + GP E I+ K D+ V V
Sbjct: 19 WDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIA 78
Query: 60 SGLSF-VQDRLKES--------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S + V+ R K +++T E + T L+PR+ + + + LQD G++++ CI
Sbjct: 79 SFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCI 138
Query: 111 NAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
NA LALI++GI ++ ++ + + I+ +++++LD N ++
Sbjct: 139 NATTLALIDAGIPVKDFVCCSTAGIV--ESDMLLDLNSLE 176
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
+ LR ++ +L + S+ DGS QG T V+A++YGP +A +K+ ++ V +
Sbjct: 17 NELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVNCQYSMATF 76
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + + ++ +A+ T L+P++ + + I+ L G
Sbjct: 77 STGERKRRPRG------DRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLMADGGNY 130
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDK 138
+NAA LALI++GI ++ + A + + K
Sbjct: 131 CASVNAATLALIDAGICLKEYVCACTASLAGK 162
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-----KIQKTIIDKASVEV- 54
+ LR L +Q+ +DGS G T V+ + GP E ++Q D A++ V
Sbjct: 20 WNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRDVAAINVN 79
Query: 55 --------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ R K G + + + E I + S L T L P +S+ +++ L GSLL
Sbjct: 80 VVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVLSQDGSLL 139
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ +NA LALI++GI M +AA
Sbjct: 140 AALLNATTLALIDAGIPMTDYIAA 163
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFRPKS 60
D +R L+ + +L +DGS G V+A++YGP E + + D+A ++ + S
Sbjct: 23 DEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILKCRY---S 79
Query: 61 GLSF-------VQDRLKE----SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
L F Q +E VI+ A+ +PRTS+ + I L+ G +
Sbjct: 80 MLPFSVAERKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILEADGGTRTAS 139
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
I A +AL ++GI+MR ++AA++ + N ++LD N I+
Sbjct: 140 IIAGSVALADAGIAMRDLVAAIA-VGKIGNVLVLDINGIE 178
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 83/149 (55%), Gaps = 13/149 (8%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRPKSGLSFVQDRL 69
NI + +DG + G T +++ + GP E K KT +K S+ +V P + + +
Sbjct: 33 NIFNDADGFAFYEIGNTKILSYIQGPTELK--KTD-EKCSIKCDVFLSPFNVYDKRKKKT 89
Query: 70 KESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
K+++ I++ CE+ +L L+ + + + + ++ G + IN LALI++GI
Sbjct: 90 KDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAGI 149
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
+++Y ++A S ++ +N++I+D NQ++ N
Sbjct: 150 AIKYFISACS-VLYLQNKIIVDGNQLEIN 177
>gi|336464304|gb|EGO52544.1| hypothetical protein NEUTE1DRAFT_72274 [Neurospora tetrasperma FGSC
2508]
Length = 251
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ LN L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +G+ ++
Sbjct: 7 EASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRE 66
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINA 112
R ES+++S+ +L PR+ ++L ++ + Q SL + +
Sbjct: 67 RHLESILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALLQT 126
Query: 113 ACLALINSGISMR 125
A LAL+++ + M+
Sbjct: 127 AVLALLSAAVPMK 139
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRPKSGLSFVQDRL 69
NI + +DG + G T +++ + GP E K DK S+ +V P + + +
Sbjct: 5 NISNDADGFAFYEIGNTKILSYIQGPTELKKTD---DKCSIKCDVFLSPFNVYDKRKKKT 61
Query: 70 KESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
K+++ I++ CE+ +L L+ + + + + ++ G + IN LALI++GI
Sbjct: 62 KDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAGI 121
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
+++Y ++A S ++ +N++I+D NQ++ N
Sbjct: 122 AIKYFISACS-VLYLQNKIIVDGNQLEIN 149
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ------KTIIDKASVEVIFR 57
LR+++ ++ + ++DGS G T V+A++YGP +++ K II+ +F
Sbjct: 22 LRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAIINCQYSMAVFS 81
Query: 58 PKSGLSFVQDR------LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
SG + R + + ++ E+ + L+PR+ + + ++ LQ GS +N
Sbjct: 82 FTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVLQVDGSDYCASVN 141
Query: 112 AACLALINSGISMR-YILAAVSCIIN-----DKNEV----ILDANQIQ 149
AA LALI++GI ++ Y + ++N D+++ +LDAN ++
Sbjct: 142 AATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATGVLDANYVE 189
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
+ LR ++ +L + S+ DGS QG T V+A++YGP +A +K+ ++ V +
Sbjct: 17 NELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVNCQYSMATF 76
Query: 57 -------RPKSGLSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
RP+ DR + + ++ +A+ T L+P++ + + I+ L G
Sbjct: 77 STGERKKRPRG------DRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLMADGGNY 130
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDK 138
+NAA LALI++GI ++ + A + + K
Sbjct: 131 CASVNAATLALIDAGICLKEYVCACTASLAGK 162
>gi|406862492|gb|EKD15542.1| exosome complex subunit Rrp46 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 247
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 55/87 (63%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L+ L R+DGS FSQ V+ ++ GP+E + + + ++A+++V+ RP +G+ ++R
Sbjct: 11 LSHLHRTDGSATFSQNGYTVIGAVNGPLEIQRRDELPEEAAIDVLVRPAAGVGSTRERHL 70
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
ES+++ST +L PR+ + +T+Q
Sbjct: 71 ESILQSTLRHIVLIHNFPRSLIQITLQ 97
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 25/171 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---------AKIQKTIIDKASVEV 54
LR+++ ++ + ++DGS G T ++ ++YGP + +K+ K I++
Sbjct: 23 LRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKVTKGIVNCQYSMA 82
Query: 55 IFRPKSGLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+F SG + R +K E+ + L+PR+ + + ++ LQ GS
Sbjct: 83 VFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCA 142
Query: 109 CINAACLALINSGISMR-YILAAVSCIIN-----DKNEV----ILDANQIQ 149
+NAA LALI++GI ++ Y + +IN D++ +LDAN ++
Sbjct: 143 SVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLERGVLDANYVE 193
>gi|401403264|ref|XP_003881451.1| putative 3' exoribonuclease family, domain 1 containing protein
[Neospora caninum Liverpool]
gi|325115863|emb|CBZ51418.1| putative 3' exoribonuclease family, domain 1 containing protein
[Neospora caninum Liverpool]
Length = 384
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 37/166 (22%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP----- 58
LR L QL +DGS SQG T V+A + GPVEA K VI +P
Sbjct: 39 LRPLSVQLGFAKTADGSARVSQGLTSVIALVVGPVEAPPGKFSSSGCVFHVILKPLAVPP 98
Query: 59 ------------------------------KSGLSFVQDRLKESVIKSTCESALLTMLHP 88
SG +F +R E +++ + + +P
Sbjct: 99 TLSAARAAAAMGSCSAVAGAGGGRKGRTGGDSGEAF--ERWIEVQLQTLLQHMVAPGEYP 156
Query: 89 RTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCI 134
R + LT+ LQD G S CINAA ALI++G+++R+ A S +
Sbjct: 157 RCLIQLTLMILQDDGGAESACINAALAALIDAGVALRFRAWAASLV 202
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEA--KIQKTI--------IDK 49
+ LR ++N +S DGS QG T V+ + GP E K Q+ +
Sbjct: 19 WNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAVVEFNVSI 78
Query: 50 ASVEVIFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
AS R K S + R+ E + ++ T E +++ L+PRT++ + + L G LL+
Sbjct: 79 ASFSTTNRKKR--SKNEKRIIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQDGGLLA 136
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NA+ LALI++GISM ++ +S ++D + +LD N ++ N
Sbjct: 137 ALTNASTLALIDAGISMYDYISGISAGLHDVSP-LLDLNTLEEN 179
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK------IQKTIIDKASVEVIFR 57
LR+++ ++ + ++DGS QG T ++ ++YGP + + K I++ +F
Sbjct: 23 LRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGIVNCQYSMAVFS 82
Query: 58 PKSGLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
SG + R +K E+ + ++PR+ + + ++ LQ GS +N
Sbjct: 83 LSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCASVN 142
Query: 112 AACLALINSGISMR-YILAAVSCIINDK---------NEVILDANQIQ 149
AA LALI++GI ++ Y + +IN+ +LDAN ++
Sbjct: 143 AATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLE 190
>gi|407040721|gb|EKE40289.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + ++ S+SDG +F QG++ V++ + P + ++ D+A V+V +
Sbjct: 14 IRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVKVEVYERCSSF 73
Query: 64 FVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
Q R + E IKS E +L+ +P + + Q ++D GS+ + +NAA AL+ SG+
Sbjct: 74 DNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGV 133
Query: 123 SMRYILAA--VSCIINDKN--EVILDAN 146
M+ I+ V+ INDK E+++D +
Sbjct: 134 DMKGIVVGMCVAGKINDKGTIEIVIDPD 161
>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449710454|gb|EMD49524.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + ++ S+SDG +F QG++ V++ + P + ++ D+A V+V +
Sbjct: 14 IRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVKVEVYERCSSF 73
Query: 64 FVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
Q R + E IKS E +L+ +P + + Q ++D GS+ + +NAA AL+ SG+
Sbjct: 74 DNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGV 133
Query: 123 SMRYILAA--VSCIINDKN--EVILDAN 146
M+ I+ V+ INDK E+++D +
Sbjct: 134 DMKGIVVGMCVAGKINDKGTIEIVIDPD 161
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 28/171 (16%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK------IQKTIIDKASVEVIF- 56
LR+++ ++ + ++DGS QG T ++ ++YGP + + K I++ +F
Sbjct: 23 LRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGIVNCQYSMAVFS 82
Query: 57 --------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
RP+ + L+ +K E+ + ++PR+ + + ++ LQ GS
Sbjct: 83 LSSGERKRRPRGDRKSQERSLQ---LKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCT 139
Query: 109 CINAACLALINSGISMR-YILAAVSCIINDK---------NEVILDANQIQ 149
+NAA LALI++GI ++ Y + +IN+ +LDAN ++
Sbjct: 140 SVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLE 190
>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 299
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L + L R+DGS F+ G V+AS GP+E ++++ + DKA+ EV RP G+
Sbjct: 18 LRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVG 77
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
R + +++ L HPR+ V L +Q L
Sbjct: 78 ATPSRALVTTLETIFPPVLSLEKHPRSLVQLVVQSL 113
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR++K + +L R+DGS G V+A++YGP E +++ + +V R K
Sbjct: 25 FDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAV---LRCKY 81
Query: 61 GLS--FVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQGSLLSC 108
++ V DR + + + E A+ PR+++ + I+ ++ +G
Sbjct: 82 NMAPFSVDDRKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEAEGGTRCA 141
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
I AA +AL ++GI MR ++ A + +D +VILD ++++
Sbjct: 142 GITAASVALADAGIPMRDMVVACAAGKSD-GKVILDLSEVE 181
>gi|424512963|emb|CCO66547.1| unknown protein [Bathycoccus prasinos]
Length = 294
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 22/158 (13%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF---- 56
+D+LRE S LN ++RS S + +T VV S+ GP E + K E +
Sbjct: 17 LDTLREQTSVLNTITRSTSSCEWHSDETKVVCSIQGPRELQFSSLSQSKEDGERLVVESY 76
Query: 57 ---------RPKSGLSF--------VQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
G SF ++R E +KS ++A+ + +I+++QEL
Sbjct: 77 CKLLPSKNDDEDDGSSFDDPLKEEKEKERTTEQFVKSCAKAAIELEKNASFGLIVSVQEL 136
Query: 100 QDQGSLLSCCINAACLALINSGISMR-YILAAVSCIIN 136
++ GS LSC +NA LALI SG+ + ++ ++ +C++
Sbjct: 137 KNDGSFLSCALNAVGLALILSGVETKGWMCSSTACLME 174
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF---- 56
+ LR L++Q++ S GS S G T ++ +++GP E + +A V+V
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVDVDVNIAG 80
Query: 57 ------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ ++G S Q + +KS +S L T L+P +++ + + L GSL + I
Sbjct: 81 FAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSDGSLFAAAI 140
Query: 111 NAACLALINSGISMRYIL 128
NA LAL+++GI M +L
Sbjct: 141 NACTLALVDAGIPMPGLL 158
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 70/144 (48%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + + + + GS + T+VVA+++GP+ + D+ ++V +S
Sbjct: 138 LRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVIDVELSAPGWMS 197
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
R E ++ E + PR + ++ + + D G+ + C+NA C ALI++ +
Sbjct: 198 RDDQRACEGRLRGAIERCVELRDFPRFGLRISARVVSDDGNAEAACVNAVCCALIDANVP 257
Query: 124 MRYILAAVSCIINDKNEVILDANQ 147
MR ++ A +C + + +++D +
Sbjct: 258 MRGLICANACALTREGSMVIDPTK 281
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 20/146 (13%)
Query: 4 LRELKSQLNILSRS--DGSVIFSQGQTVVVASMYGPVE---------------AKIQKTI 46
+R ++ Q++ LS S GS + G TVV+A++ GPV+ +Q
Sbjct: 26 IRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQAVLDVTVQSAP 85
Query: 47 IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
++ + PK+ ++ ++K E+A+L L+P++ + L + L D G L
Sbjct: 86 FSSSADRRVANPKTDRRLIE---ASHMLKRAMEAAILLHLYPKSRIELVVSVLADDGGRL 142
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
INAA LAL+++GI M+ + A S
Sbjct: 143 CAAINAATLALMDAGIPMKDFVCACS 168
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIF- 56
+ LR + +N + SDGS QG +V + GP E I ++ +D KAS+ +
Sbjct: 19 WNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEP-ILRSQLDATKASLNITVN 77
Query: 57 --------RPKSGLSFVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
R KS + L+ ++ + T E ++ L+PRT + + I LQ G +L
Sbjct: 78 ITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVLQQDGGILG 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN+ LALI+SGI+M ++A+S + D +LD N ++ N
Sbjct: 138 SLINSITLALIDSGIAMYDYVSAISIGLYDTTP-LLDVNTLEEN 180
>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 308
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L + L R+DGS F+ G V+AS GP+E ++++ + DKA+ EV RP G+
Sbjct: 27 LRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVG 86
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
R + +++ L HPR+ V L +Q L
Sbjct: 87 ATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSL 122
>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Ogataea parapolymorpha DL-1]
Length = 222
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
L + DGS + G T V++S+ GP+E A+ + + KA +++ RP SG+ ++ L E
Sbjct: 10 LDQVDGSASYEFGATKVISSVTGPIESARPRNELPTKAYLDINIRPSSGVPSTRETLLEH 69
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQD------QGSLLSCCINAACLALINSGISMRY 126
+ + + +PR ++ + +Q L++ L IN+ +ALINSGIS++
Sbjct: 70 KLGQLLPTVINLDQYPRQTIQIAVQILKNGEPKEYTARQLVAIINSVFVALINSGISLKS 129
Query: 127 ILAAVSCIINDKNEV 141
A C I+ + E+
Sbjct: 130 SFMATCCSISTEGEI 144
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--------------IQKTI 46
+ LR L++Q++ S GS + G T ++ S++GP E + + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVD 80
Query: 47 IDKASVEVIFRPK-SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
++ A + R + +G S Q ++++S +S L T L+P +++ + + L GSL
Sbjct: 81 VNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSL 140
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
L+ +NA LAL+++GI M +L + ++ D N
Sbjct: 141 LAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNN 182
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 35/161 (21%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI------------------- 42
+ +R ++++ + SR DGS + QG T VVA +YGP E ++
Sbjct: 35 EEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAGGAAAVGTGSGNAASN 94
Query: 43 --QKTIIDKASVEVIF-----RP-KSGLSFVQDRLKESV---IKSTCESALLTMLHPRTS 91
+ +++ + F +P +SG DR K + +K E+ + T L+PR+
Sbjct: 95 TQPRAVVNCEFTQAAFATSERKPQRSG-----DRKKVEMSLAVKQIFEACVQTQLYPRSQ 149
Query: 92 VILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
+ + +Q L G L INA LALI++GI++ + A S
Sbjct: 150 IDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASS 190
>gi|405119992|gb|AFR94763.1| hypothetical protein CNAG_01381 [Cryptococcus neoformans var.
grubii H99]
Length = 299
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR L + L R+DGS F+ G V+AS GP+E ++++ + DKA+ EV RP G+
Sbjct: 18 LRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVG 77
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
R + +++ L HPR+ V L +Q L
Sbjct: 78 ATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSL 113
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326643|gb|EFH57063.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
+++++QL+++ RS G + +G T V+A++YGP + +KA EVI++PK+G
Sbjct: 10 KQVRNQLSVI-RSTGDRRYEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIG 68
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
++ E ++K T +S + ++P T+ + IQ + D GS+ C
Sbjct: 69 KVEKEYEMILKRTMQSICVLTVNPNTTTSVIIQVVHDDGSISFLC 113
>gi|154313781|ref|XP_001556216.1| hypothetical protein BC1G_05740 [Botryotinia fuckeliana B05.10]
gi|347832379|emb|CCD48076.1| similar to exosome complex subunit Rrp46 [Botryotinia fuckeliana]
Length = 256
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L+ L R DGS FSQ ++ ++ GP+E + + + ++A+++VI RP +G+ ++R
Sbjct: 11 LSPLHRVDGSASFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGGTRERHL 70
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
E++++S+ +L PRT + +T+Q
Sbjct: 71 EAILQSSLRQIILIHNFPRTLIQITLQ 97
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 1 MDSLRELKSQ-----LNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV-- 52
+D R L+++ LS DGS + GQ+ V AS++GP E+ Q+ DK V
Sbjct: 15 LDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVTC 74
Query: 53 EVIFRPKSGLSFV----QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
EV +G S + RL E + + S +L +P + + + I+ LQ G+
Sbjct: 75 EVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNE 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
CINAACLAL+++ ++MR ++ +S + D++ +I AN
Sbjct: 135 KVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLAN 175
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----DKASVEV-- 54
+ LR L +Q+ +DGS G T V+ + GP E + ++ D A++ V
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDMAAINVNV 79
Query: 55 -------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+ R K G + + + E+ I + S L T L P +S+ +++ L GSLL+
Sbjct: 80 VVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQDGSLLA 139
Query: 108 CCINAACLALINSGISMRYILAA 130
INA LALI++GI M +AA
Sbjct: 140 ALINATTLALIDAGIPMSDYIAA 162
>gi|430811741|emb|CCJ30798.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813124|emb|CCJ29503.1| unnamed protein product [Pneumocystis jirovecii]
Length = 223
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 10 QLNILSRSDGSVIFSQ-------GQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+ ++L+R +GS I+ + G ++ ++ GP E K + +I +A+++VI RP
Sbjct: 7 KTSLLTRVEGSCIYEEDLFLTKIGPNKILCAVIGPSETKTRDEVIGEATIDVIVRPDVRG 66
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG-----SLLSCCINAACLAL 117
S +D E +I T ++ ++P T + + IQ + + SLL+ +N ++L
Sbjct: 67 SSTKDIQMEQIIWKTISPMIMRTMYPHTLIQMVIQIISREKSENIVSLLAAILNTTFISL 126
Query: 118 INSGISMRYILAAVS 132
++SG++M +AVS
Sbjct: 127 LDSGVAMTNTFSAVS 141
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRPKSGLSFVQDRL 69
NI + +DG + G T +++ + GP E K + +K S+ EV P + + +
Sbjct: 33 NIFTDADGFAFYEIGNTKLLSYIQGPTELKKSE---EKCSIKCEVFLSPFNVYEKKKKKT 89
Query: 70 KESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
K+SV I++ CE+ +L L+ + + + + ++ G + IN LALI++GI
Sbjct: 90 KDSVTNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGI 149
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
+++Y ++A S ++ +N +++D NQ++ N
Sbjct: 150 AIKYFISACS-VLYLQNRILVDGNQLEIN 177
>gi|451995370|gb|EMD87838.1| hypothetical protein COCHEDRAFT_1159049 [Cochliobolus
heterostrophus C5]
Length = 258
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L L+R+DGS ++ ++ ++ GP+E + + + ++A++EV RP +G+ ++R
Sbjct: 8 LTHLNRADGSATYTHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNLRPAAGVGSPRERHL 67
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
E+++ +T S +LT PRT V +T+Q
Sbjct: 68 ETLVHNTLRSIILTQSIPRTLVQITLQ 94
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTIID-----KASVEV 54
+ LR ++ ++ + S DGS QG VV + GP E + + + SV V
Sbjct: 19 WNELRRFQASISTHAHSADGSSYLEQGNNKVVTLVRGPGEPASRGQLDGQRATLRVSVNV 78
Query: 55 IFRPKSGLSFVQDRLKESVI------KSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
K S R + V+ + T E A L L+PRT++ + + L+ G +L
Sbjct: 79 TKFSKFERSRTSHRNERRVLEIQTSLRRTFEKACLLHLYPRTAIDVELHVLEQDGGVLGA 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
IN LAL+++G++M +A VS ++D+ +LD N ++
Sbjct: 139 MINGITLALVDAGVAMWDYVAGVSVGLHDQTP-LLDCNSLE 178
>gi|451851819|gb|EMD65117.1| hypothetical protein COCSADRAFT_88333 [Cochliobolus sativus
ND90Pr]
Length = 258
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L L+R+DGS ++ ++ ++ GP+E + + + ++A++EV RP +G+ ++R
Sbjct: 8 LTHLNRADGSATYTHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNLRPAAGVGSPRERHL 67
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
E+++ +T S +LT PRT V +T+Q
Sbjct: 68 ETLVHNTLRSIILTQSIPRTLVQITLQ 94
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----DKASVEV-- 54
+ LR L +Q+ +DGS G T V+ + GP E + ++ D A++ V
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDMAAINVNV 79
Query: 55 -------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+ R K G + + + E+ I + S L T L P +S+ +++ L GSLL+
Sbjct: 80 VVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQDGSLLA 139
Query: 108 CCINAACLALINSGISMRYILAA 130
INA LALI++GI M +AA
Sbjct: 140 ALINATTLALIDAGIPMSDYIAA 162
>gi|310793767|gb|EFQ29228.1| exosome complex subunit Rrp46 [Glomerella graminicola M1.001]
Length = 243
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
+++++ L R+DGS FS+G VV+S+ GP+E + + ++ V+V+ RP +G+ +
Sbjct: 8 QARISHLPRADGSATFSRGGYCVVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTGE 67
Query: 68 RLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSLLSCCINA 112
R E++++S + PR + +T+Q + Q +LL ++
Sbjct: 68 RQLENILQSALRQLIPVKNFPRCLIQITLQVTETPQNDYANSKVVQAQSSLTLLPALFHS 127
Query: 113 ACLALINSGISMRYILAAVS-CIINDKNEVILDANQIQSN 151
A L+L+++ + ++ I + I+ D +++I D + ++++
Sbjct: 128 AVLSLLSAAVPLKAIATCTTLAILEDGSKIIADPSPLEAD 167
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--------------IQKTI 46
+ LR L++Q++ S GS + G T ++ S++GP E + + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVD 80
Query: 47 IDKASVEVIFRPK-SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
++ A + R + +G S Q ++++S +S L T L+P +++ + + L GSL
Sbjct: 81 VNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSL 140
Query: 106 LSCCINAACLALINSGISMRYIL 128
L+ +NA LAL+++GI M +L
Sbjct: 141 LAAAVNACTLALVDAGIPMPGLL 163
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI---IDKASVEV--- 54
+ LR L +Q+ +DGS G T V+ + GP E + + +A+V V
Sbjct: 20 WNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEAAVTVNLV 79
Query: 55 ------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ R K G + + + E+ I + L T L P +S+ +++ L GSLL+
Sbjct: 80 VAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQDGSLLAA 139
Query: 109 CINAACLALINSGISMRYILAAVS-------CIINDKNEVILDAN 146
+NA+ LALI++GI M +AA + +D + +LD N
Sbjct: 140 LLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLN 184
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E ALL L PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALLLELFPRTAIDIFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI M+ ++AA C + +++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMKDLVAA--CAAGKIEGQIVLDLNKEEDN 181
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRPKSGLSFVQDRL 69
NI + +DG + G T +++ + GP E K + +K S+ EV P + + +
Sbjct: 33 NIFTDADGFAFYEIGNTKLLSYIQGPTELKKSE---EKCSIKCEVFLSPFNVYEKKKKKT 89
Query: 70 KESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
K+SV I++ CE+ +L L+ + + + + ++ G + IN LALI++GI
Sbjct: 90 KDSVTNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGI 149
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
+++Y ++A S ++ +N +++D NQ++ N
Sbjct: 150 AIKYFISACS-VLFLQNRILVDGNQLEIN 177
>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R L +++ILSRSDGS FS G + ++ GP E +I+ +A V+VI P GL
Sbjct: 14 IRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEAFVDVIVVPVCGLP 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQ----------GSL-------- 105
+ IKS +L +PR+ + + +Q L G+L
Sbjct: 74 GPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLSKPSDRWTNGFTTGTLEPSATVPL 133
Query: 106 ---------LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ INAA LAL+++G+ MR AV I + V + N Q+
Sbjct: 134 FEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGLAILPPSAVSPNHNNPQA 187
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA---SVEVIFRP---KSGLSFVQD--R 68
+DGS + G T V +++GP E +I+ + +VEV P +SG+ + R
Sbjct: 37 ADGSATVTSGLTSVTVTIFGPREPRIRSSSSHDHVTLTVEVGVPPWSQQSGMKRTRGDRR 96
Query: 69 LKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
L E +K + E ++ L+PR+ +++ +Q L G +L INA LALI++GI +
Sbjct: 97 LVEMGMSLKQSFEPVIMGNLYPRSEILINVQVLSSDGGILPTAINATTLALIDAGIPLLD 156
Query: 127 ILAAVSCIINDKNEVILDANQIQSN 151
L ++S ++ + +LD +Q + +
Sbjct: 157 YLTSISLGLH-LTQPLLDLSQPEES 180
>gi|169614405|ref|XP_001800619.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
gi|111061558|gb|EAT82678.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
Length = 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 55/90 (61%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ L L+R+DGS ++ ++ ++ GP+E + + ++A++EV RP G+ ++
Sbjct: 5 EATLTHLNRADGSATYTHNGFSIIGAVNGPIEVLRRDEMPEEATIEVNVRPAVGVGSPKE 64
Query: 68 RLKESVIKSTCESALLTMLHPRTSVILTIQ 97
R E+++ +T S +LT L PRT V LT+Q
Sbjct: 65 RHLETLLHNTLRSIILTRLIPRTLVQLTLQ 94
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFR 57
+ LR +N + SDGS QG V+ + GP E + K+ +D KA++ +
Sbjct: 19 WNELRRFDCSINTHAHTSDGSSYLEQGNNKVITIVKGPQEPPL-KSQLDQTKATLNISLN 77
Query: 58 --PKSGLSFVQDRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S + + K ++++ T + +L L+PRT + + I LQ GSLLS
Sbjct: 78 ITPFSKFERSKTQHKNEKRILELQTILIKTFKKNILMHLYPRTLIDIQIHVLQQDGSLLS 137
Query: 108 CCINAACLALINSGISMRYILAAVS 132
C IN LALI++GI++ ++ +S
Sbjct: 138 CLINGITLALIDAGIAIYDFISGIS 162
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-----DKASVEV- 54
+ LR L +Q+ +DGS G T V+ + GP E ++Q+ D A++ V
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPRDTAAINVN 79
Query: 55 --------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ R K G + + + E+ I + S L T L P +S+ +++ L GSLL
Sbjct: 80 VVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHVLSQDGSLL 139
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ +NA LALI++GI M +AA
Sbjct: 140 AALLNATTLALIDAGIPMTDYIAA 163
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKESV----------------IKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K+S ++ + L T ++P +++ L + L
Sbjct: 81 VAGFSGV-DRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|403163440|ref|XP_003323509.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164298|gb|EFP79090.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 312
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R L +++ILSRSDGS FS G + ++ GP E +I+ +A V+VI P GL
Sbjct: 14 IRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEAFVDVIVVPVCGLP 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQ----------GSL-------- 105
+ IKS +L +PR+ + + +Q L G+L
Sbjct: 74 GPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLSKPSDRWTNGFTTGTLEPTATVPL 133
Query: 106 ---------LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ INAA LAL+++G+ MR AV I + V + N Q+
Sbjct: 134 FEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGLAILPPSAVSPNHNNPQA 187
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 1 MDSLRELKSQ-----LNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV-- 52
+D R L+++ LS DGS + GQ+ V AS++GP E+ Q+ DK V
Sbjct: 15 LDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVTC 74
Query: 53 EVIFRPKSGLSF--VQDRLK-----ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
EV +G S Q R K ++ + S +L +P + + + I+ LQ G+
Sbjct: 75 EVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNE 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
CINAACLAL+++ ++MR ++ +S + D++ +I AN
Sbjct: 135 KVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLAN 175
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKESV----------------IKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K+S ++ + L T ++P +++ L + L
Sbjct: 81 VAGFSGV-DRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFR------ 57
R++ Q +++++ GS F +T V+ S+YGP + ++++ I+K ++ +
Sbjct: 45 RDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLKCELKYAPYSS 104
Query: 58 PKSG--LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACL 115
PK G + D K ++ S + +P++ + + + L+D GS++ I AA +
Sbjct: 105 PKHGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMPAAITAASV 164
Query: 116 ALINSGISMRYILAAVSCIINDKNEVILDA 145
AL+++GI M ++ A S I ++ I+D
Sbjct: 165 ALVDAGIEMYDVITASSIRIAGQDTFIIDP 194
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKESV----------------IKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K+S ++ + L T ++P +++ L + L
Sbjct: 81 VAGFSGV-DRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKESV----------------IKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K+S ++ + L T ++P +++ L + L
Sbjct: 81 VAGFSGV-DRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDK----------- 49
+ LR L +Q+ +DGS G T V+ + GP E + + +
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQSKEAAVTVNLV 79
Query: 50 -ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
A + R K G + + + E+ I + L T L P +S+ +++ L GSLL+
Sbjct: 80 VAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQDGSLLAA 139
Query: 109 CINAACLALINSGISMRYILAAVS-------CIINDKNEVILDAN 146
+NA+ LALI++GI M +AA + +D + +LD N
Sbjct: 140 LLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLN 184
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-----------------IQ 43
+ LR L++Q++ S GS + G T ++ S++GP E + +
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSSGAVVEVD 80
Query: 44 KTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
I ASV+ + ++G S Q S ++S +S L T L+P +++ + + L G
Sbjct: 81 VNIAGFASVD--RKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSVLSSDG 138
Query: 104 SLLSCCINAACLALINSGISMRYIL 128
S+L+ +NA LAL+++GI M +L
Sbjct: 139 SVLAAAVNACTLALVDAGIPMPGLL 163
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR L NIL R GS +SQG T V+A++YGP + +KA EVI++PKSG
Sbjct: 35 DQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEVIWKPKSG 94
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKE----------------SVIKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K + ++ + L T L+P +++ L + L
Sbjct: 81 VAGFSGV-DRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ S GS S G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVN 80
Query: 59 KSGLSFVQDRLKE----------------SVIKSTCESALLTMLHPRTSVILTIQELQDQ 102
+G S V DR K + ++ + L T L+P +++ L + L
Sbjct: 81 VAGFSGV-DRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVSVLSSD 139
Query: 103 GSLLSCCINAACLALINSGISMRYILAA 130
GSL + CINA LAL+++GI M +L A
Sbjct: 140 GSLFAACINACTLALVDAGIPMPGLLCA 167
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------------AKIQKTIIDK 49
+ +R ++++ + SR DGS + QG T VVA +YGP E A T
Sbjct: 33 EEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAAAVGTGSGN 92
Query: 50 ASVEVIFRPKSGLSFVQ--------------DRLKESV---IKSTCESALLTMLHPRTSV 92
A+ R F Q DR K + +K E+ + T L+PR+ +
Sbjct: 93 AASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEACIQTQLYPRSQI 152
Query: 93 ILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
+ +Q L G L INA LALI++GI++ + A S
Sbjct: 153 DIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASS 192
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 19 GSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVI-----FRPKSGLSFVQD----R 68
GS + + G T V+ S GP +A + + + D+AS+EV+ F P V R
Sbjct: 109 GSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRRNVNPTTDRR 168
Query: 69 LKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
L E+ +++ +++L L PR+ + +T+ L D G L INAA LAL+++GI +R
Sbjct: 169 LVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLALMDAGIPLRD 228
Query: 127 ILAAVSC---IINDKNEVILDANQ 147
++ A S +E+I+D N+
Sbjct: 229 MVCACSAGRWSAGGTDEIIVDLNR 252
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 28/171 (16%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK------IQKTIIDKASVEVIF- 56
LR+++ ++ + ++DGS G T V+A++YGP + + K I++ +F
Sbjct: 23 LRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIVNCQYSMAVFS 82
Query: 57 --------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
RP+ + ++ ++ E+ + L+PR+ + + ++ LQ GS
Sbjct: 83 FTSGERKRRPRGDWKSQERSIQ---LRHAMEAIIHLELYPRSQIDIFVEILQVDGSDYCA 139
Query: 109 CINAACLALINSGISMR-YILAAVSCIIN-------DKNEV--ILDANQIQ 149
+NAA LALI++GI ++ Y + +IN DK +LDAN ++
Sbjct: 140 SVNAATLALIDAGIPIKNYAVGCTVALINTPSTDEQDKTLAGGVLDANFVE 190
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS-----VEVI 55
+ LR L++Q++ S GS + G T ++ S++GP E + A VEV
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSSGAVVEVD 80
Query: 56 F----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
+ ++G S Q + +++ +S L T L+P +++ + + L GSL
Sbjct: 81 VNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSVLSADGSL 140
Query: 106 LSCCINAACLALINSGISMRYIL 128
L+ INA LAL+++GI M +L
Sbjct: 141 LAAAINACTLALVDAGIPMPGLL 163
>gi|85112835|ref|XP_964421.1| hypothetical protein NCU03268 [Neurospora crassa OR74A]
gi|28926202|gb|EAA35185.1| predicted protein [Neurospora crassa OR74A]
Length = 251
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ LN L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +G+ ++
Sbjct: 7 EASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRE 66
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINA 112
R E +++S+ +L PR+ ++L ++ + Q SL +
Sbjct: 67 RHLEFILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQT 126
Query: 113 ACLALINSGISMR 125
A LAL+++ + M+
Sbjct: 127 AVLALLSAAVPMK 139
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK------------IQKTIID 48
+ LR L++Q++ S GS S G T ++ S++GP E + + + ++
Sbjct: 21 WNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHAVVEVDVN 80
Query: 49 KASVEVIFRPK-SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
A + R + +G S Q + ++S +S L T L+P +++ + + L GSLL+
Sbjct: 81 VAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLSADGSLLA 140
Query: 108 CCINAACLALINSGISMRYIL 128
+NA LAL+++GI M +L
Sbjct: 141 AALNACTLALVDAGIPMPGLL 161
>gi|403303026|ref|XP_003942148.1| PREDICTED: uncharacterized protein LOC101043625 [Saimiri
boliviensis boliviensis]
Length = 413
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
++ T E+A+LT LHPR+ + + +Q LQ G + C+NAA LA++++GI MR + A S
Sbjct: 271 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSA 330
Query: 134 IIND 137
D
Sbjct: 331 GFVD 334
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|347441428|emb|CCD34349.1| similar to exosome complex exonuclease RRP41 [Botryotinia
fuckeliana]
Length = 261
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS--------- 51
+ LR L +Q++ SDGS S G T V+ ++ GP + ++I S
Sbjct: 20 WNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNNAGEKAEV 79
Query: 52 -VEVIFRPKSGLSFVQ-----DRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
VE+ F +G+ + R++E + + +T LLT L +++++++ L G
Sbjct: 80 RVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISLHILSLDG 139
Query: 104 SLLSCCINAACLALINSGISM-RYILAAVSCII------NDKNEVILDAN 146
SLLS INA+ LALI++GI M YI A + ++K + +LD N
Sbjct: 140 SLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLN 189
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF-V 65
+K ++ +LSR+DGS G+ ++ ++GP EA +++ +A VI + SF V
Sbjct: 1 MKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRS--QRADSAVIRYRYNMASFSV 58
Query: 66 QDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACL 115
+DR + V + E ++ L P+T++ + ++ LQ + INA+ +
Sbjct: 59 EDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSI 118
Query: 116 ALINSGISMRYILAAVSCIINDKN-EVILDANQIQSN 151
AL ++GI M+ ++ SC + +++LD N+ + N
Sbjct: 119 ALADAGIPMKGLI--TSCAFGKVDGKIVLDLNKEEDN 153
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R+ + +L +DGS G T+V A + GP+E K + D A ++V F S +
Sbjct: 19 MRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRRNH--DSAELKVFF---SQAT 73
Query: 64 FVQ--------DR-LKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F DR + E+ ++K E +L P TS+ + +Q LQD GS+ + INA
Sbjct: 74 FATRRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIRVQVLQDDGSVNAAAINA 133
Query: 113 ACLALINSGISMRYILAA 130
LALI++GI M I+++
Sbjct: 134 CTLALIDAGIPMSDIVSS 151
>gi|350296389|gb|EGZ77366.1| hypothetical protein NEUTE2DRAFT_100177 [Neurospora tetrasperma
FGSC 2509]
Length = 251
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
++ LN L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +G+ ++
Sbjct: 7 EASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRE 66
Query: 68 RLKESVIKSTCESALLTMLHPRT--SVILTIQELQD---------QGSL----LSCCINA 112
R E +++S+ +L PR+ ++L ++ + Q SL +
Sbjct: 67 RHLEFILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQT 126
Query: 113 ACLALINSGISMR 125
A LAL+++ + M+
Sbjct: 127 AILALLSAAVPMK 139
>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-------------- 46
+ LR +++Q++ S GS + G TVVV +++GP E K +T
Sbjct: 21 WNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAVVSVVVNI 80
Query: 47 -----IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLH----PRTSVILTIQ 97
+D+ ++ G DR + + S A LH P +++ L +
Sbjct: 81 AGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHSTISLHVS 140
Query: 98 ELQDQGSLLSCCINAACLALINSGISMRYILAA 130
L GS+ + CINA LAL+++GI M +L A
Sbjct: 141 VLSSDGSIFAACINACTLALVDAGIPMPGLLCA 173
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS-----VEVI 55
+ LR ++Q++ S GS + G T ++ S++GP E + A VEV
Sbjct: 21 WNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSSGAVVEVD 80
Query: 56 F----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
+ ++G S Q + +++ +S L T L+P +++ + + L GSL
Sbjct: 81 VNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSVLSSDGSL 140
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
L+ +NA LAL+++GI M +L + ++ D + Q
Sbjct: 141 LAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQ 184
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
++ T E+A+LT LHPR+ + + +Q LQ G + C+NAA LA++++GI MR + A S
Sbjct: 69 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSA 128
Query: 134 IIND 137
D
Sbjct: 129 GFVD 132
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEA--KIQKTI--------IDK 49
+ LR ++N +S DGS QG T V+ + GP E K Q+ +
Sbjct: 19 WNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAVIEFNVSI 78
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
AS R K + + + ++ T E +++ L+PRT++ + + L G LL+
Sbjct: 79 ASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQDGGLLAAL 138
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
NA+ LALI++GISM ++ +S ++D + +LD N ++
Sbjct: 139 TNASTLALIDAGISMYDYISGISAGLHDISP-LLDLNTLE 177
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 20/165 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR 57
+D +R + ++ +LSR+DGS G+ ++A++YGP E ++QK D+A V +R
Sbjct: 21 VDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQKP--DEAIVR--YR 76
Query: 58 PKSGLSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQGSLLS 107
V+DR + + + E ++T +P + + + LQ +
Sbjct: 77 YNMAAFSVEDRARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAEVLQADAGTRT 136
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
INAA +AL ++GI M+ +++A C + +++LD ++ + N
Sbjct: 137 AAINAASIALADAGIPMKGLISA--CAVGKVDGQLVLDLSKDEDN 179
>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
Length = 296
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 23/152 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP 58
+ LR +++Q++ + GS + G TVV+ ++GP E + + + +V +
Sbjct: 21 WNELRLMQAQISTNPATSGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGAVISVAVN 80
Query: 59 KSGLSFVQDRLKESV--------------------IKSTCESALLTMLHPRTSVILTIQE 98
+G S V DR K+S+ ++ + L T L+P +++ L I
Sbjct: 81 IAGFSGV-DRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTISLNISV 139
Query: 99 LQDQGSLLSCCINAACLALINSGISMRYILAA 130
L GSL + CINA LAL+++GI M +L A
Sbjct: 140 LSSDGSLFAACINACTLALVDAGIPMPGLLCA 171
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
++ T E+A+LT LHPR+ + + +Q LQ G + C+NAA LA++++GI MR + A S
Sbjct: 69 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSA 128
Query: 134 IIND 137
D
Sbjct: 129 GFVD 132
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK---------------IQKTIID 48
LR+++ ++ + ++DGS G T V+A++YGP + K +
Sbjct: 23 LRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFVNCQYSMAVFS 82
Query: 49 KASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S E RP+ + + + + ++ E+ + L+PR+ + + ++ LQ GS
Sbjct: 83 FTSGERKRRPRGDW---KSQERSAQLRHAMEAIIHLELYPRSQIDIFVEVLQVDGSDYCA 139
Query: 109 CINAACLALINSGISMRYILAAVSCII 135
+NA+ LALI++GI ++ AV C +
Sbjct: 140 SVNASTLALIDAGIPIKNY--AVGCTV 164
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----------DKA 50
+ LR L +Q+ +DGS F G T V+ + GP E + + D A
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQAPGRDAA 79
Query: 51 SVEV---------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQD 101
S+ V + R K S + + E I S + T L P +S+ +++ L
Sbjct: 80 SIIVNVVIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITVSLHVLSQ 139
Query: 102 QGSLLSCCINAACLALINSGISMRYILAA 130
GSLL+ INAA LA+I++GI M +AA
Sbjct: 140 DGSLLAALINAATLAVIDAGIPMTDYIAA 168
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV--EVIFRPKSG 61
R + LS DGS + GQ+ V AS++GP E+ Q+ DKA V EV +G
Sbjct: 24 RRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALVTCEVAVAAFAG 83
Query: 62 LSFV----QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
+ + RL E + + S +L +P + + + I+ LQ G+ CINAAC
Sbjct: 84 ENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEKIACINAAC 143
Query: 115 LALINSGISMRYILAAVSCI 134
LALI++ ++MR AV CI
Sbjct: 144 LALIDANVAMR---DAVCCI 160
>gi|402219702|gb|EJT99775.1| hypothetical protein DACRYDRAFT_117939 [Dacryopinax sp. DJM-731
SS1]
Length = 226
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M L LK L LSR DGS F+ G + +AS+ GP++ + ++A +EV RP
Sbjct: 1 MTDLPPLKLDLGELSRVDGSARFASGSVIALASVTGPIDVRSGWEKPEEAFLEVNVRPLE 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL----------QDQGSLLS--C 108
G+ Q + +KS +LL PRT + LT+Q L Q Q SL
Sbjct: 61 GVPGTQAKSIAQTLKSALTPSLLLGRAPRTLIQLTLQALSPSSLPSNFAQPQISLCGKAA 120
Query: 109 CINAACLALINSG-ISMRYILAAVSCIINDKN-EVILDANQ 147
+NAA A +++G +SMR I+ A C + +N ++LD +
Sbjct: 121 MMNAATAAFLDAGSVSMRGIVCA--CAVGTRNGGLVLDPTE 159
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEA------KIQKTIIDKASVE 53
+ LR +S +N + DGS QG V+ + GP E IQK I+ K +V
Sbjct: 19 WNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAIL-KVTVN 77
Query: 54 V-----IFRPKSGLSFVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+ R KS + L+ ++ + T E ++ ++PRT + + I LQ G ++
Sbjct: 78 ITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHVLQQDGGIMG 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+N LALI++GI+M ++ +S + D +LD N ++ N
Sbjct: 138 TLLNGISLALIDAGIAMYDYVSGISVGLYDTTP-LLDINSLEEN 180
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIF-- 56
+ LR + +N + +DGS QG ++ + GP E ++ + KA++ V
Sbjct: 19 WNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKATLTVTVNM 78
Query: 57 -------RPKSGLSFVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
R K+G + L+ ++ + T E ++ L+PRT++ + + LQ+ G +L
Sbjct: 79 TKFAAAERSKTGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQVHVLQNDGGVLGS 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
IN LALI++GI+M ++ +S + D +LD N+++
Sbjct: 139 MINGITLALIDAGIAMYEYISGISVGLYDTTP-LLDLNRLE 178
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-----KASVEVIF 56
+ LR L++Q++ S GS S G T ++ S++GP E + A VEV
Sbjct: 22 NELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGGGAAGSGHAVVEVDV 81
Query: 57 ----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ ++G S Q + ++S +S L T L+P +++ + + L GSLL
Sbjct: 82 NVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLSADGSLL 141
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ INA LAL+++GI M +L +
Sbjct: 142 AAAINACTLALVDAGIPMPGLLCGCT 167
>gi|355686798|gb|AER98190.1| exosome component 4 [Mustela putorius furo]
Length = 186
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
++ T E+A+LT LHPR+ + + +Q LQ G + C+NAA LA++++G+ MR + A S
Sbjct: 45 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGVPMRDFVCACSA 104
Query: 134 IIND 137
D
Sbjct: 105 GFVD 108
>gi|378727125|gb|EHY53584.1| hypothetical protein HMPREF1120_01773 [Exophiala dermatitidis
NIH/UT8656]
Length = 271
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 22/163 (13%)
Query: 8 KSQLNILSRSDGSVIFS--QGQTVVVASMYGPVEAKIQKTIIDKAS-VEVIFRPKSGLSF 64
K+ L+ L +DGS ++ GQT+V Y PVE + I +++ ++V RP +G+
Sbjct: 5 KAILHTLVSADGSATYTANNGQTIVAGVNY-PVEVPYRSDEIPESTFIDVNLRPHNGVGM 63
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG------------------SLL 106
V++R E +I T ++ +L L PRT + +T+Q + + +L
Sbjct: 64 VKERHVEDLIMRTLQTIVLGDLTPRTMLQITLQVVSVESDESLPGGVKGGGQGETYLDML 123
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ +NA+ L +++G+ M+ + A I+ + +++ +Q
Sbjct: 124 ASALNASVLGCLDAGVQMKAVAGAALVGIDQEGRLVVGPGVVQ 166
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-------------AKIQKTII 47
+ LR L++Q+ +DGS G T V+ + GP E A + +I+
Sbjct: 20 WNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDAAVNVSIV 79
Query: 48 DKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
A + R K G + + E+ + S L T L P +S+ +++ L GSLL+
Sbjct: 80 -VAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQDGSLLA 138
Query: 108 CCINAACLALINSGISMRYILAAVS-------CIINDKNEVILDAN 146
+NA LAL+++GI M +AA + +D + +LD N
Sbjct: 139 ALLNATTLALVDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLN 184
>gi|402074521|gb|EJT70030.1| hypothetical protein GGTG_12205 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 259
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S E + L+ L R+DGS +S V AS+ GP+EA+ + +A V+VI RP +
Sbjct: 1 MPSRSEPAALLSHLPRADGSATYSHAGYTVTASVNGPIEAQRRDEDPYEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
G+ ++R E++++S+ +L PR V + +Q
Sbjct: 61 GVGGTRERHLETILQSSLRQLILVKNFPRGLVQIVLQ 97
>gi|428673135|gb|EKX74048.1| conserved hypothetical protein [Babesia equi]
Length = 257
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRPKSGLSFVQDRLKESVI 74
SDG+ G+T V++++ EAK + + K +EV RP +G R E+ +
Sbjct: 41 SDGTFTAIGGRTSVISTLLFTHEAKNRNIVGSFHKPCLEVYIRPATGTVKSSTRAIEATL 100
Query: 75 KSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC- 133
E + + R ++ IQ L+D G LLS C+NA + L+ SGI +R + AVS
Sbjct: 101 IKMMEKIVNSETLGRITLSFRIQILEDSGGLLSVCLNALTICLLISGIEIRELYFAVSFG 160
Query: 134 IINDKNE---VILDANQIQ 149
I+ +++E VILD +
Sbjct: 161 IVKNEDEQECVILDPTDAE 179
>gi|389748013|gb|EIM89191.1| hypothetical protein STEHIDRAFT_76109 [Stereum hirsutum FP-91666
SS1]
Length = 302
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESV 73
L R DGS F G T +AS+ GP+E ++ K++ EV RP S L V+ + S
Sbjct: 24 LDRVDGSARFGFGPTKALASVSGPIEVRLASEHPSKSTFEVHLRPLSSLPSVESKSLASS 83
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQD---------------------QGSLLSCCINA 112
I++ +L+ +PRT + L +Q + S ++ C+NA
Sbjct: 84 IRALLSPSLILTRNPRTLIQLVVQAVSPLGDSASGSGSGRGGGRGRGRMGSSGVAACVNA 143
Query: 113 ACLALINSG-ISMRYILAAVS 132
AL+++G + MR ++ A++
Sbjct: 144 GTAALVSAGSVPMRGVVCAIA 164
>gi|339248287|ref|XP_003375777.1| DEAD-box helicase 1 [Trichinella spiralis]
gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
Length = 714
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS----- 60
E + + + GS + S+ T ++ S++GP + K K + D A V+V S
Sbjct: 499 EFRCTVRYVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLPDSAVVQVHLTTVSKDEIG 558
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
G S + +++ C+S +L L P+ + + +QEL+ G + +N C+AL+ S
Sbjct: 559 GRSSIDSGQMTLFLQNICQSIILVKLLPKRLITIVVQELESDGCFMEVAVNGLCIALLES 618
Query: 121 GISMRYILAA 130
+ M + AA
Sbjct: 619 ALPMNDMFAA 628
>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
gi|392867950|gb|EAS33670.2| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 298
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI-------------- 46
+ LR +++Q++ S GS + G TVVV +++GP E K +T
Sbjct: 21 WNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAVVSVVVNI 80
Query: 47 -----IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLH----PRTSVILTIQ 97
+D+ ++ G DR + + S A LH P +++ + +
Sbjct: 81 AGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHSTISVHVS 140
Query: 98 ELQDQGSLLSCCINAACLALINSGISMRYILAA 130
L GS+ + CINA LAL+++GI M +L A
Sbjct: 141 VLSSDGSIFAACINACTLALVDAGIPMPGLLCA 173
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ---------KTIIDKASVEV 54
LR ++ ++ + ++DGS QG+T ++A++YGP + + + K I++
Sbjct: 22 LRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVKGIVNCQYSTA 81
Query: 55 IF------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+F R K + + + ++ E+ + L R+ + + ++ LQ GS
Sbjct: 82 VFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIFVEVLQVDGSDFCV 141
Query: 109 CINAACLALINSGISMRYILAAVSCIIND----------KNEVILDANQIQ 149
+NAA LALI++GI ++ S ++D + ILDAN I+
Sbjct: 142 AVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILDANWIE 192
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKI------QKTIIDKASVE 53
+ LR + +N S SDGS QG V+ + GP E + +K I+ K SV
Sbjct: 19 WNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRSQMDTEKAIL-KISVN 77
Query: 54 V-----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
+ R KS S +R ++ ++I+ T E ++ ++PRT + + + LQ G
Sbjct: 78 ITQFSKFERSKS--SHKNERRVLEMQTALIR-TFEKNVMLNIYPRTLIDIEVHVLQQDGG 134
Query: 105 LLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
++ IN LALI++GI+M ++ VS + D +LD N ++ N
Sbjct: 135 IMGSLINGITLALIDAGIAMYDYISGVSIGLYDTTP-LLDVNSLEEN 180
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDK-ASVEVIFR-------PKSGLSFVQDR 68
+DGS QG ++ + GP E + + K A++ V +S S +R
Sbjct: 36 ADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNER 95
Query: 69 ----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+ S+++ T E L+ L+PRTS+ + + LQ G +L +N LALI++GI+M
Sbjct: 96 RTLEWQASLVR-TFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLNGITLALIDAGIAM 154
Query: 125 RYILAAVSCIINDKNEVILDANQIQSN 151
++ VS + D +LD N ++ N
Sbjct: 155 YDFVSGVSVGLYDTTP-LLDLNSLEEN 180
>gi|389624769|ref|XP_003710038.1| hypothetical protein MGG_16298 [Magnaporthe oryzae 70-15]
gi|351649567|gb|EHA57426.1| hypothetical protein MGG_16298 [Magnaporthe oryzae 70-15]
gi|440485604|gb|ELQ65546.1| hypothetical protein OOW_P131scaffold00481g15 [Magnaporthe oryzae
P131]
Length = 260
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S E + ++ + R+DGS I+S V AS GP+EA+ + +A V+VI RP +
Sbjct: 1 MPSRGEPAALVSHIPRADGSAIYSHAGYTVTASANGPIEAQRRDEDPYEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
G+ ++R ES++++T +L PR + + +Q
Sbjct: 61 GVGGTRERHLESLLQATLRQIILVKNFPRGLIQVVLQ 97
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDK---------AS 51
D +R+++ ++ +L ++DGS G T + A + GP E + + DK AS
Sbjct: 23 DEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVINCRYHMAS 82
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
V R G++ + L VI+ E+ + PR + + ++ +Q G + I
Sbjct: 83 FSVDERKPLGMTRREIELS-KVIREALETVVFLEEFPRMMIDIFVEVIQADGGTRTAGIT 141
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
AA LAL ++GI M ++AA++ D ++LD N+
Sbjct: 142 AASLALADAGIPMADMIAAIAVGKVD-GVLVLDINE 176
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 1 MDSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI----------IDK 49
+ LR ++N + SDGS QG + +V + GP+E + + ++
Sbjct: 19 WNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKAQLSTTGATLNLNLNV 78
Query: 50 ASVEVIFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
I R K S + R++E + +K T E +++ +PRT++ + + L G L+S
Sbjct: 79 TPFSSIDRKKR--SKNERRIQEIITSLKRTFEQSIIIDKYPRTTISINVHVLSLDGGLIS 136
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
NA LALI++GI+M ++AVS D N +LD N ++
Sbjct: 137 SITNAITLALIDAGIAMYEYISAVSAGWYD-NTPLLDLNSLE 177
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 22/160 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR- 57
D LRE + ++ +L +DGS + G T V+AS++GP + +Q++ D+A +++ +
Sbjct: 22 DELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHLQES--DRAVIKMRYNM 79
Query: 58 -PKSGLSFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
P S V DR+ E V K+ + AL P + ++++ ++ G
Sbjct: 80 APFS----VDDRMSPGPNRRAQEIELVAKNALKPALELERFPTAGIDISMEVVESDGGTR 135
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
I AA LAL ++GI M+ +++A + + D V LD N
Sbjct: 136 VTGITAASLALADAGIPMKGMVSACAAGVVDDTPV-LDVN 174
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR++ + +DG + G T V S++GP EAK + +T+ D+A +VEV P S
Sbjct: 23 LRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLNVEVNVLPFS 82
Query: 61 -GLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G + R + IK+T E + T L+PR + + + Q G LL CIN
Sbjct: 83 TGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGGLLPACINGT 142
Query: 114 CLALINSGISMRYILAAVSCIIN 136
LAL +G+ + + AVS ++
Sbjct: 143 TLALAAAGVPLLDFVCAVSAGVH 165
>gi|346978117|gb|EGY21569.1| hypothetical protein VDAG_03009 [Verticillium dahliae VdLs.17]
Length = 249
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
+ +L+ L R+DGS F+ +VAS+ GP+EA+ + +A ++V RP +G+ ++
Sbjct: 7 EGRLSHLHRTDGSATFAHNDHCIVASVNGPIEAQRRDEDPFEAVIDVTVRPAAGVGGTRE 66
Query: 68 RLKESVIKSTCESALLTMLHPRTSVILTIQ 97
R ES++++ + + T PR+ +T+Q
Sbjct: 67 RQLESLLQAALQQLICTKRFPRSVFQITLQ 96
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRPKS 60
LR++ + +DG + G T V S++GP EAK + +T+ D+A +VEV P S
Sbjct: 33 LRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLNVEVNVLPFS 92
Query: 61 -GLSFVQDRLKESV------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
G + R + IK+T E + T L+PR + + + Q G LL CIN
Sbjct: 93 TGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGGLLPACINGT 152
Query: 114 CLALINSGISMRYILAAVSCIIN 136
LAL +G+ + + AVS ++
Sbjct: 153 TLALAAAGVPLLDFVCAVSAGVH 175
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 14/127 (11%)
Query: 19 GSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFRPKSGLSFVQDRL-------- 69
GS + S G T V+ + GP +A + + + D+A++EV R S S DR
Sbjct: 45 GSALVSMGLTQVLCVVRGPSDAGRRTEELPDRATLEVTMR-TSPFSPPGDRRVTNPTSDR 103
Query: 70 ----KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
+ ++++ +++L L+P++ + +T+ L D G L INAA LALI++GI ++
Sbjct: 104 RLIEQSHLLQTALSASILLHLYPKSKISVTVMVLADDGGRLEAAINAATLALIDAGIPLK 163
Query: 126 YILAAVS 132
++ A S
Sbjct: 164 DMVCACS 170
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
NI + +DG + G T +++ + GP E K + +K S++ + V + +
Sbjct: 33 NIFTDADGFAFYELGNTKLLSYIQGPTELKKSE---EKCSIKCETKDS-----VTNEIS- 83
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAV 131
+ I++ CE+ +L L+ + + + + ++ G + IN LALI++GI+++Y ++A
Sbjct: 84 AYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISAC 143
Query: 132 SCIINDKNEVILDANQIQSN 151
S ++ +N +++D NQ++ N
Sbjct: 144 S-VLYLQNRILVDGNQLEIN 162
>gi|440474388|gb|ELQ43135.1| hypothetical protein OOU_Y34scaffold00172g5 [Magnaporthe oryzae
Y34]
Length = 296
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S E + ++ + R+DGS I+S V AS GP+EA+ + +A V+VI RP +
Sbjct: 1 MPSRGEPAALVSHIPRADGSAIYSHAGYTVTASANGPIEAQRRDEDPYEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
G+ ++R ES++++T +L PR + + +Q
Sbjct: 61 GVGGTRERHLESLLQATLRQIILVKNFPRGLIQVVLQ 97
>gi|396476681|ref|XP_003840091.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
gi|312216662|emb|CBX96612.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
Length = 301
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 54/87 (62%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L L+++DGS ++ ++ ++ GP+E + + + ++A++EV RP +G+ ++R
Sbjct: 46 LTHLNQADGSATYTHNGYSIIGAVNGPIEVQRRDEMPEEAAIEVNVRPAAGVGSPKERHL 105
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
E+++ +T S +L L PRT V +T+Q
Sbjct: 106 ETLLHNTIHSIILARLIPRTLVQITLQ 132
>gi|221482227|gb|EEE20582.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 392
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 36/159 (22%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV-EVIFRPKSGL 62
LR L +L + GS SQG T V+A + GPVEA VI +P +G
Sbjct: 38 LRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFFHVILKPLAGP 97
Query: 63 SFVQ-----------------------------------DRLKESVIKSTCESALLTMLH 87
+ +R E +++ + +L +
Sbjct: 98 PMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQTLLQHMVLPGEY 157
Query: 88 PRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
PR V LT+ LQD G S CINAA ALI++G+S+R+
Sbjct: 158 PRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRF 196
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-------------AKIQKTIID 48
+ LR L +Q+ +DGS G T V+ + GP E A + I+
Sbjct: 325 NELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPSEPQRRGGAGGQTKDAAVNVNIV- 383
Query: 49 KASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
A + R K G + +++ E+ I + L T L P +S+ +++ L GSLL+
Sbjct: 384 VAGFSSVDRRKRGRNDKRNQELEAAIAKAVAANLHTHLFPHSSISISLHVLSQDGSLLAT 443
Query: 109 CINAACLALINSGISMRYILAAVS 132
+NA+ LALI++GI M +AA +
Sbjct: 444 LLNASTLALIDAGIPMTDYIAACT 467
>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 239
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + ++ + GS FS G + A + P E I K+ ++VI RP SG +
Sbjct: 13 LRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPEETN---NIRGKSYLDVIIRPNSGST 69
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++L E E + PR V + IQ + G + C NAA LAL+++GI
Sbjct: 70 GDTEKLLELYCTRVLEDIIDFKQIPRCIVSVAIQVISQDGPIFPICFNAAVLALLDAGIP 129
Query: 124 MRYILAAVS----CI--IND-KNEVILDAN 146
M A+S C +ND +I+D N
Sbjct: 130 MTTTPLAISIAEACTYQLNDLSKHIIIDPN 159
>gi|237842251|ref|XP_002370423.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|211968087|gb|EEB03283.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|221502879|gb|EEE28593.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 392
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 36/159 (22%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV-EVIFRPKSGL 62
LR L +L + GS SQG T V+A + GPVEA VI +P +G
Sbjct: 38 LRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFFHVILKPLAGP 97
Query: 63 SFVQ-----------------------------------DRLKESVIKSTCESALLTMLH 87
+ +R E +++ + +L +
Sbjct: 98 PMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQTLLQHMVLPGEY 157
Query: 88 PRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
PR V LT+ LQD G S CINAA ALI++G+S+R+
Sbjct: 158 PRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRF 196
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N S + DGS QG ++ + GP E +++ + KA + V
Sbjct: 19 WNELRRFESSINTHSHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 79 TKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 135
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 136 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID-KASVEV---IFR----PKSGLSFVQDR 68
+DGS QG ++ + GP E ++ KA+++V I R +S +S +R
Sbjct: 36 ADGSSYLEQGNNKIITLVKGPKEPSLRSQANSLKATMDVSVNITRFSKFERSAISHKNER 95
Query: 69 LK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
++ + T E ++ L+PRT + + + LQ G + + IN LALI++GI+M
Sbjct: 96 RVLEIQTALLRTFEKNIMLHLYPRTQISIQVHILQQDGGMFASLINGITLALIDAGIAMY 155
Query: 126 YILAAVSCIINDKNEVILDANQIQSN 151
++ +S + D +LD N ++ N
Sbjct: 156 DYVSGISIGLFDTTP-LLDVNTLEEN 180
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP---VEAKIQKTIIDKAS-----VEVI 55
+R++K QL ++ + GS +F G T VVA + GP + + Q +++++ V
Sbjct: 23 IRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSLGVNQSNRGILNVNFF 82
Query: 56 FRPKSGLSFVQD-----RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
S + D ++KE +IKS E + L+PR+ + L + L+ G S
Sbjct: 83 VTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLDLQVFVLESDGGYRSA 142
Query: 109 CINAACLALINSGISMRYILAAVSC 133
NA +AL++ GI+M+ + A +
Sbjct: 143 AFNAVSMALMDGGIAMKDFVVATTA 167
>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 300
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK------------IQKTIID 48
+ LR +++Q++ + GS + G T+V+ ++GP E + I ++
Sbjct: 21 WNELRLMQAQISTNPATSGSSYLAMGNTIVICMVHGPAEGRRSEATGSAREGAIISVAVN 80
Query: 49 KASVEVIFRPKSGLSFVQ---------DRLKES----VIKSTCESALLTMLHPRTSVILT 95
A + R K L+ DR + ++ + L T L+P +++ L
Sbjct: 81 IAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLN 140
Query: 96 IQELQDQGSLLSCCINAACLALINSGISMRYILAA 130
I L GSL + CINA LAL+++GI M +L A
Sbjct: 141 ISVLSSDGSLFAACINACTLALVDAGIPMPGLLCA 175
>gi|443924812|gb|ELU43768.1| 3' exoribonuclease family domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 237
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 2 DSLRELKSQLNILSRSDGSVIFS-QGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR ++ +L L+R DGS FS G +AS+ GP+E + + D+A+ EV RP +
Sbjct: 10 DQLRRIEIELGGLARVDGSARFSFAGNCRALASVTGPIEVRQLIELPDRATFEVTVRPVA 69
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI 96
G+ ++ + LL HPR+ + LTI
Sbjct: 70 GVPATPEKALAKHVHDVFRPTLLLTQHPRSLIQLTI 105
>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 223
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + ++ S+SDG +F QG++ +++ + P + ++ D+A V+V +
Sbjct: 14 IRSISYVRDVSSKSDGCYMFKQGKSCIISGVNAPRDCPKREANPDRAVVKVEVYERCSSF 73
Query: 64 FVQDRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
Q R + E IKS E +++ +P + + Q ++D GS+ + +NAA AL+ SG+
Sbjct: 74 DSQRRTELEEFIKSGVEWTVISEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGV 133
Query: 123 SMRYILAAVSCIIN--DKN---EVILDAN 146
M+ I+ + C+ D N E+++D +
Sbjct: 134 DMKGIVVGM-CVAGKIDNNGTIEIVIDPD 161
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEA---KIQKTIIDKASVEVIFRPKSGLSFVQDRLKES- 72
+DGS G ++A++YGP EA +Q+ D+A V + S F D K
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA--DRAIVRARY---SMAPFSVDERKRPG 55
Query: 73 ----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
VI ES + +PRTS+ + I+ LQ I A LAL ++GI
Sbjct: 56 PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGI 115
Query: 123 SMRYILAAVSCIINDKNE-VILDANQIQSN 151
MR ++ V C ++ V+LD N+ + N
Sbjct: 116 PMRDLI--VGCAAGKIDDVVVLDLNKEEDN 143
>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA-SVEVIFRPKSGL 62
+R +L +L + DGS G T V+ + GPVE + + ++V R SG+
Sbjct: 35 MRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGYPLDVTVRRASGM 94
Query: 63 SFVQDRLKESVIKSTCESALLTMLHP-RTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+D+ E + + + T L P T V + ++ + + GSLLS NAA LAL+++G
Sbjct: 95 PTAEDKSVEYQLTKFINTIIDTHLLPGNTMVTVAVEVMNNDGSLLSTIFNAAILALLDAG 154
Query: 122 -ISMR 125
I +R
Sbjct: 155 SIPLR 159
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 55/188 (29%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------------------------ 39
LR++++++ + +++DGS QG T +A +YGP E
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPGAGGGLGRRRPAHASVYA 81
Query: 40 ---------AKIQ-----------KTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCE 79
+K Q + + D+A V + + S + + + + +CE
Sbjct: 82 AHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSAT-FSTGERKRRPHGDRKSCE 140
Query: 80 ----------SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILA 129
+A+LT LHP + + + +Q LQ G + C+NAA LA++++GI +R +
Sbjct: 141 MGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPVRDFVC 200
Query: 130 AVSCIIND 137
A S D
Sbjct: 201 ACSAGFVD 208
>gi|344232061|gb|EGV63940.1| hypothetical protein CANTEDRAFT_105628 [Candida tenuis ATCC 10573]
Length = 268
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 32/164 (19%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA--SVEVIFRP--------- 58
+ N +S ++GS G T+V S++GP I+ + I++A SVE F P
Sbjct: 51 KTNFISNANGSSYIEHGDTIVQVSVFGP--RPIKSSFIEQASFSVECRFLPHLKQDDALD 108
Query: 59 -----------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVIL--TIQELQDQGSL 105
++GLS+ + ++ S ++S ++L +P++++ L T+ E + +
Sbjct: 109 IDGDHHSNPNGRTGLSYTEHKIS-SFVESCLVPSILLDKYPKSTIDLHITVIEHNSESTS 167
Query: 106 LSCCIN----AACLALINSGISMRYILAAVSCIINDKNEVILDA 145
L+ +N A+ LAL++SG+ +R I+ A II+D VILD
Sbjct: 168 LTNLVNWITVASSLALVDSGVEVRDIVTA-GHIISDGQHVILDP 210
>gi|302411144|ref|XP_003003405.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261357310|gb|EEY19738.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 249
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 54/90 (60%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
+ +L+ L R+DGS F+ ++AS+ GP+EA+ + +A ++V RP +G+ ++
Sbjct: 7 EGRLSHLHRTDGSATFAHNDHCIMASVNGPIEAQRRDEDPFEAVIDVTVRPAAGVGGTRE 66
Query: 68 RLKESVIKSTCESALLTMLHPRTSVILTIQ 97
R ES+++++ + + T PR+ +T+Q
Sbjct: 67 RQLESLLQASLQQLICTKRFPRSVFQITLQ 96
>gi|330914844|ref|XP_003296808.1| hypothetical protein PTT_06997 [Pyrenophora teres f. teres 0-1]
gi|311330886|gb|EFQ95093.1| hypothetical protein PTT_06997 [Pyrenophora teres f. teres 0-1]
Length = 262
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L L+R+DGS + ++ ++ GP+E + + + ++A++EV RP G+ ++R
Sbjct: 8 LTHLNRADGSATYIHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNVRPAMGVGSPRERHL 67
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQ 97
E+++ +T S +LT PRT V +T+Q
Sbjct: 68 ETLVHNTMRSIILTQSIPRTLVQVTLQ 94
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 21/144 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR- 57
D LRE ++++L ++GS G T VVAS++GP E +Q+ D+A +++ +
Sbjct: 22 DELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPKHLQEP--DRAVIKMRYNM 79
Query: 58 -PKSGLSFVQDRLKESVIKSTCESALLTM--------LH--PRTSVILTIQELQDQGSLL 106
P S V DR++ + E L++ LH P + ++++ ++ G
Sbjct: 80 APFS----VDDRMRPGPNRRAKEIGLVSKKALAPAVDLHEFPNAGIDISMEIIESDGGTR 135
Query: 107 SCCINAACLALINSGISMRYILAA 130
INAA LAL ++GI M +++A
Sbjct: 136 VTGINAASLALADAGIPMEGLVSA 159
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVE-----VIFRPK 59
R L Q ++SR+ GS G+T V+ + YGP EA T D +E F +
Sbjct: 21 RSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITRAPFAEQ 80
Query: 60 SGLSFVQ---DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLA 116
+ + DR + + + A+L +P++++ L L+D G +L + A+ A
Sbjct: 81 KRATLQETDADRGLRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGVLPALVMASSTA 140
Query: 117 LINSGISMRYILAAVS 132
L+ +GI +R I+ A++
Sbjct: 141 LVEAGIELRDIVTAIA 156
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---------IFRPKSGLSFVQ 66
+DGS QG ++ + GP E ++ + +K ++ V I R ++G +
Sbjct: 36 ADGSSYLEQGNNKIITLVKGPQEPNLRSQVNSNKGTLTVTVNITKFSDIERSQAGHRNER 95
Query: 67 DRLK-ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
L+ ++ + T E ++ L+ RT + + I +Q G LL IN LALI++GI+M
Sbjct: 96 RTLELQTALVRTFEKNIMLQLYSRTVIDIQIHVIQKDGGLLGAMINGITLALIDAGIAMY 155
Query: 126 YILAAVSCIINDKNEVILDANQIQSN 151
++ VS + D +LD N ++ N
Sbjct: 156 DYISGVSVGLYDTTP-LLDLNALEEN 180
>gi|238882418|gb|EEQ46056.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 266
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 74/139 (53%), Gaps = 23/139 (16%)
Query: 30 VVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESA-LLTMLHP 88
++ S+ GP+E K ++ + ++AS+E+ P GLS +++L E+ ++S ++ ++ +P
Sbjct: 51 LITSINGPIEPKQRQELPNRASLEINIYPSIGLSTTKEKLLENKLRSILQNNIIINYKYP 110
Query: 89 RTSVILTIQ----------------ELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
R + ++IQ L D +L++CC ALI++ I+M Y A++
Sbjct: 111 RQLIQISIQFLISSGSSSNYGSMMMNLLDLNALINCC----YFALIDANIAMNYSFASIV 166
Query: 133 CIINDKNEVI--LDANQIQ 149
II+ + ++ +D N +
Sbjct: 167 IIIDHQGNLLIPIDGNDLH 185
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 1 MDSLRELKSQ-----LNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV-- 52
+D R L+++ LS DGS + GQ+ V A ++GP E+ Q+ DK V
Sbjct: 15 LDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTC 74
Query: 53 EVIFRPKSGLSFV----QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
EV +G + + +L E + + S +L +P + + + I+ LQ G+
Sbjct: 75 EVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNE 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVI-LDANQIQS 150
C+NAACLALI++ ++MR + + I D++ +I L +N+++S
Sbjct: 135 KIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTSNELRS 180
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---I 55
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V I
Sbjct: 19 WNELRRFESSINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 56 FR----PKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
R +S S +R ++ S+++ ++ +L ++PRT + + I L+ G ++
Sbjct: 79 TRFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGIMG 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 138 TLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>gi|342319249|gb|EGU11199.1| Exosome non-catalytic core component involved in 3'-5' RNA
processing and degradation [Rhodotorula glutinis ATCC
204091]
Length = 301
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 34/160 (21%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+LR L LSR+DGS F+ G V+ S+ GP E +++ ++D+A++E+ RP G
Sbjct: 11 ALRPLALSQGTLSRADGSAQFTFGNVSVLGSVTGPAEVRLRDELVDRATLEINVRPLRGQ 70
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL-------------------QDQG 103
+ S + +L L+PR + T+Q + D+G
Sbjct: 71 GGPPIKAAASTLSQLFAPLILLHLYPRALIQHTLQTISSPSTTFTKPFSTDPSLRSDDKG 130
Query: 104 ---------------SLLSCCINAACLALINSGISMRYIL 128
+ INAA +AL+++G+ R +L
Sbjct: 131 KGKELEAPRGTGVGAGEKAARINAAMMALVDAGVQCRGML 170
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFR 57
+ LR+ + +N + SDGS QG + + GP E Q++ +D KA++ V
Sbjct: 19 WNELRKFDASINTHAHLSDGSSYLEQGNNKIFTLVKGPREPS-QRSQLDQSKATLNVTVN 77
Query: 58 -------PKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+S S +R ++ S+++ T E L+ +PRT + + I LQ G L+
Sbjct: 78 ITRFSKFERSKASHKNERRTLEIQTSLVR-TFEKNLMLQNYPRTVIDIEIHVLQQDGGLV 136
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LA I++GI+M ++ VS + D +LD N ++ N
Sbjct: 137 GSLINGITLACIDAGIAMYDYISGVSVGLYD-TVPLLDINSLEEN 180
>gi|392561650|gb|EIW54831.1| hypothetical protein TRAVEDRAFT_130863 [Trametes versicolor
FP-101664 SS1]
Length = 262
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+RE+ L R DGS F G T+ ++S+ GP+E + +A++++ RP + ++
Sbjct: 1 MREVTIAYEGLDRVDGSARFGFGSTLSLSSVSGPIEVRPTLENPSQATLDIQIRPLAAIA 60
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL--QDQGS------------LLSCC 109
+ + +KS AL HPRT V + Q L GS L +
Sbjct: 61 GTDSKALATTLKSIFSPALHLAHHPRTLVQIVGQALCGTQSGSGLGSAGRGWNAGLTASL 120
Query: 110 INAACLALINSG-ISMRYILAAVSCIINDKNEVILDANQIQ 149
+NA AL+N+G + M ++ AV+ ++LD + +
Sbjct: 121 VNATTAALVNAGSVPMMGVVCAVAVGRLPDGTLVLDPEETE 161
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V
Sbjct: 21 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 80
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 81 TKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 137
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 138 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 182
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V
Sbjct: 19 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 79 NKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 135
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 136 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V
Sbjct: 19 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 79 TKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 135
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 136 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 25 QGQTVVVASMYGPVE---AKIQKTIIDKASVEVIF-------RPKSGLSFVQDRLKESVI 74
G T V+ S+ GP+E A + + +V+V F R K G S + +S +
Sbjct: 73 HGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLEMQSAL 132
Query: 75 KSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILA-AVS 132
T + LLT LHPR+ V +++ L GS+L+ C+NAA LAL+++G+ M Y+ A V+
Sbjct: 133 SRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDYVTACTVA 192
Query: 133 CIIN--DKNEVILD 144
N + E +LD
Sbjct: 193 SYTNPDESGEPLLD 206
>gi|395526107|ref|XP_003765212.1| PREDICTED: exosome complex component RRP46-like [Sarcophilus
harrisii]
Length = 191
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 105 LLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LL+CC+NAACLAL+++G+ MR + V+C ++ +ILD Q
Sbjct: 85 LLACCLNAACLALVDAGVPMRALFCGVTCALDPDGALILDPTAKQEK 131
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 1 MDSLRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKA----SVEV 54
+ LR +S +N SDGS QG ++ + GP E + + +KA SV +
Sbjct: 19 WNELRRFESSINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRSQVDTNKALLRISVNI 78
Query: 55 IFRPKSGLSFVQDRLKESVIK------STCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
K S R + V++ T E ++ L+PRT + + I LQ G ++
Sbjct: 79 TQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLIDIEIHVLQQDGGIMGS 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+N LALI++GI+M ++ +S + D +LD N ++
Sbjct: 139 LLNGITLALIDAGIAMYDYISGISVGLYDTTP-LLDVNSLE 178
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V
Sbjct: 19 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 79 TKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 135
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 136 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKA---------- 50
+ LR +K + +L R+DGS G ++A++YGP + +I K D+A
Sbjct: 19 NELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAIIRCRYNMAP 78
Query: 51 -SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTML---HPRTSVILTIQELQDQGSLL 106
SVE RP DR + K T E+ +++ PR+S+ + I+ L+ G
Sbjct: 79 FSVEERKRPGP------DRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEADGGTR 132
Query: 107 SCCINAACLALINSGISMRYILAAVSC 133
I AA +AL ++GI +R ++ A S
Sbjct: 133 CAGITAASVALADAGIPLRDLVVACSA 159
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 17/110 (15%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVE-----V 54
+ LR ++ ++ + S++DGS QG T V+A++YGP E + K+ I D+A +
Sbjct: 20 NELRRIQCRMGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGSKSKAIHDQALINCQYSMA 79
Query: 55 IF-------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ 97
+F RP+ V+ L +K T E+A+LT L+PR+ + + I+
Sbjct: 80 VFSTGERRRRPRGDKKSVEMTLH---LKQTFEAAILTHLYPRSQIDIFIE 126
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 5 RELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
RE++ + + L++ DGS +SQG T VVA++ GPV A+ + K +V+V
Sbjct: 14 REMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQED--YRKCNVQVYVNRAVR 71
Query: 58 -PKSG----LSFVQDRLKESVIKSTCESALLTMLH--------PRTSVILTIQELQDQGS 104
P++G L + RL++ + + E L + PR + + + L D G+
Sbjct: 72 IPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGA 131
Query: 105 LLSCCINAACLALINSGISMRYILAAVSCI 134
LLS NA AL+++G+ R +AAV+ +
Sbjct: 132 LLSVATNALMCALLDAGVPCRTTVAAVTIV 161
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIF--- 56
+ LR +K + +L+R+DGS G ++ +YGP EA + + ID A V+ +
Sbjct: 24 FNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMA 83
Query: 57 ------RPKSGLSFVQDRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
R + G DR VI S+++ PR + + I+ LQ
Sbjct: 84 AFSVDERKRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRI 139
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
+ AA +AL ++GI MR ++ V C ++LD ++ + N
Sbjct: 140 AGLTAATVALADAGIPMRDMV--VGCTAGKVDGHIVLDLSKEEDN 182
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFRPKSGL 62
LR L+ ++ +L +DGS G T VVA++YGP E ++ ++ D+A + +
Sbjct: 24 LRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIRCRY---HMA 80
Query: 63 SFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F D K VI+ E+ +LT L PRT + + I+ ++ G + +
Sbjct: 81 PFSTDERKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRADGGTRTAALT 140
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI M+ ++A V+ + + ++LD ++++
Sbjct: 141 AASLALADAGIPMKGLVAGVA-VGKVQGTLVLDIDELE 177
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-----IDKASVEV 54
+ LR +N S + DGS QG ++ + GP E ++ + + K SV +
Sbjct: 19 WNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKALLKVSVNI 78
Query: 55 IFRPKSGLSFVQDRLKESVIK------STCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
K+ S + + V++ T ++ ++PRT + + I LQ G L+
Sbjct: 79 TKFSKTERSKTSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHVLQQDGGLVGT 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GI+M ++ VS + D +L+ N ++ N
Sbjct: 139 LINGITLALIDAGIAMFDYISGVSVGLYDTTP-LLEVNSLEEN 180
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 3 SLRELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR-- 57
RE++ + + L++ DGS +SQG T VVA++ GPV A+ + K V+V
Sbjct: 12 GFREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQED--YRKCGVQVYVNRA 69
Query: 58 ---PKSG----LSFVQDRLKESVIKSTCESALLTMLH--------PRTSVILTIQELQDQ 102
P++G + + R+++ + + E L T + PR + + I L +
Sbjct: 70 VRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVLEVHITILAED 129
Query: 103 GSLLSCCINAACLALINSGISMRYILAAVSCI 134
G+LLS NA AL+++G+ R +AAVS +
Sbjct: 130 GALLSVATNALMCALLDAGVPCRTTVAAVSIV 161
>gi|68492541|ref|XP_709982.1| likely exosome component [Candida albicans SC5314]
gi|46431037|gb|EAK90700.1| likely exosome component [Candida albicans SC5314]
Length = 269
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 21/141 (14%)
Query: 30 VVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESA-LLTMLHP 88
++ S+ GP+E K ++ + ++AS+E+ P GLS +++L E+ ++S ++ ++ +P
Sbjct: 48 LITSINGPIEPKQRQELPNRASLEINIYPSIGLSTTKEKLLENKLRSILQNNIIINYKYP 107
Query: 89 RTSVILTIQEL------------QDQGSL------LSCCINAACLALINSGISMRYILAA 130
R + ++IQ L + GS+ L+ IN ALI++ I+M Y A+
Sbjct: 108 RQLIQISIQFLISSGSGSSSSSSSNYGSMMMNLLDLNALINCCYFALIDANIAMNYSFAS 167
Query: 131 VSCIINDKNEVI--LDANQIQ 149
+ II+ + ++ +D N +
Sbjct: 168 IVIIIDHQGNLLIPIDGNDLH 188
>gi|189199822|ref|XP_001936248.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983347|gb|EDU48835.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 243
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 11 LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
L L+R+DGS ++ ++ ++ GP+E + + + ++A++EV RP G+ ++R
Sbjct: 8 LTHLNRADGSATYTHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNVRPAMGVGSPRERHL 67
Query: 71 ESVIKSTCESALLTMLHPRTSV 92
E+++ +T S +LT PRT V
Sbjct: 68 ETLVHNTLRSIILTQSIPRTLV 89
>gi|258576013|ref|XP_002542188.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902454|gb|EEP76855.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 270
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK- 59
+ LR + +Q++ S GS + G TVVV +++GP E K +T V
Sbjct: 21 WNELRLIDAQISTNPASSGSSYLATGNTVVVCNVHGPAEGKRSETTGGSGGAVVSVVVNI 80
Query: 60 SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALIN 119
+G + + DR K+S++ S + +++ + + L GS+ + C+NA LAL++
Sbjct: 81 AGFAGI-DRRKKSMMASGGGGS-------DSTISIHVSVLSSDGSIFAACVNACTLALVD 132
Query: 120 SGISMRYILAA 130
+GI M +L A
Sbjct: 133 AGIPMPGLLCA 143
>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA-SVEVIFRPKSGL 62
+R +L +L + DGS G T V+ + GPVE + + ++V R SG+
Sbjct: 35 MRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGYPLDVTVRRASGM 94
Query: 63 SFVQDRLKESVIKSTCESALLTMLHP-RTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+D+ E + + + L P T V + ++ + + GSLLS NAA LAL+++G
Sbjct: 95 PTAEDKSVEYQLTKFINTIIDAHLLPGNTMVTVAVEVMNNDGSLLSTIFNAAILALLDAG 154
Query: 122 -ISMR 125
I +R
Sbjct: 155 SIPLR 159
>gi|312072883|ref|XP_003139269.1| hypothetical protein LOAG_03684 [Loa loa]
gi|307765574|gb|EFO24808.1| hypothetical protein LOAG_03684 [Loa loa]
Length = 224
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL- 62
LR+LK+QL+ L R+DGS QG TV+ + GP K + ++ ++++++ GL
Sbjct: 16 LRDLKAQLSFLPRADGSCALEQGTTVIWCGINGPGNVSSSKRLSERLVIDILYKHAHGLK 75
Query: 63 -SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
S +RL + +K + + + +PR + +T+ LQ+ G
Sbjct: 76 NSVKINRLLGAALKHSVDH----VHYPRVVLNVTLHLLQEGG 113
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA------KIQKTII----DKAS 51
D LR +K ++ IL+R+DGS G V+A++YGP E ++ + I+ + AS
Sbjct: 24 DELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIVRYRYNMAS 83
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
V R + G L + V + E +LT PR+ + + ++ LQ + IN
Sbjct: 84 FSVEERKRPGPDRRSYELSK-VSREALEPVILTSFFPRSVIDVFVEVLQADAGTRTAGIN 142
Query: 112 AACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
AA +AL ++GI M+ +++ SC + ++LD + + N
Sbjct: 143 AAAVALADAGIPMKSMIS--SCAAGKVGDTIVLDPMKEEDN 181
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVE 53
+ LR + +N S + DGS QG V+ + GP E ++ +D A SV
Sbjct: 19 WNELRRFECSINTHSHAADGSSYLEQGNNKVITLVKGPQEPS-SRSQVDTAKALLRISVN 77
Query: 54 VIFRPKSGLSFVQDRLKESVIK------STCESALLTMLHPRTSVILTIQELQDQGSLLS 107
+ K+ S + + V++ T ++ ++PRT + + + LQ G ++
Sbjct: 78 ITKFSKTERSKTSHKNERRVLEMQTALVRTFNKNVMLNVYPRTLINIEVHVLQQDGGIMG 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GI+M ++ VS + D +LD N ++ N
Sbjct: 138 SLINGITLALIDAGIAMYDYISGVSVGLYDTTP-LLDTNSLEEN 180
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 26 GQTVVVASMYGPVEAKIQKTII---DKASVE--VIFRPKSGLS----FVQDRL---KESV 73
G T V+A +YGP +A + + DKA+V V P G + R+
Sbjct: 2 GNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYAQA 61
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
I+ E +LT L+P +++ + Q G L CC+NAA LA+I++GI + +++
Sbjct: 62 IRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSLNV 121
Query: 134 IINDKNEVILDANQIQSN 151
D N ++ D N ++S+
Sbjct: 122 GYMD-NTILFDMNYVESH 138
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKI--QKTIIDKASVEVIFRPKSGLSFVQDRLKESV-- 73
DG F G T + A + GP E + +K ++ V P + L + + K++V
Sbjct: 39 DGFSFFEIGNTKLFAYIQGPNEYRRPDEKCLV---KCNVFLSPFNILEKKRKKSKDNVTR 95
Query: 74 -----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYIL 128
I++ C +L L+ + + + + ++ G L + +N LALI++GI+++Y +
Sbjct: 96 EISSYIRNICNHIILLDLYKNSEINIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFI 155
Query: 129 AAVSCIINDKNEVILDANQIQSN 151
+A S ++ +N +I+D NQ + N
Sbjct: 156 SA-SSVLYLQNNIIVDGNQFEVN 177
>gi|399219118|emb|CCF76005.1| unnamed protein product [Babesia microti strain RI]
Length = 269
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTII---DKASVEVIFRPKSGLSFV 65
NIL+ +G T V+ SM GP E +I+ T ++ + + RP G
Sbjct: 37 NILNVPNGIKFSLSDHTSVLCSMLGPYEERRKRIKPTFAVYPNRLRLSIFIRPNCGSIAN 96
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
+ R E VI ++ + T P+ + IQ D GSLL+ IN++ +A I GIS+
Sbjct: 97 KYRNYEFVINKILQTIITTNTMPQCGLSFVIQIFNDSGSLLAHSINSSIVACIIGGISIE 156
Query: 126 YILAAVS 132
+I AVS
Sbjct: 157 FIPIAVS 163
>gi|358400730|gb|EHK50056.1| hypothetical protein TRIATDRAFT_297398 [Trichoderma atroviride IMI
206040]
Length = 247
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 72/143 (50%), Gaps = 16/143 (11%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
L ++L+ L ++DGS F+ G V A++ GPVEA+ + +A V+V RP +G+
Sbjct: 4 LTAELSHLPKTDGSANFAYGGYTVTAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTG 63
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS---------------LLSCCIN 111
+R E++++ + PR + +T+Q ++ + ++ ++
Sbjct: 64 ERQLEAILQPALRHLIPVRNFPRCVIQVTLQVMETPENAYVNSKVMQPRLNLGIIPALLH 123
Query: 112 AACLALINSGISMRYILAAVSCI 134
AA L L+ + + M+ + A+ +C+
Sbjct: 124 AAILGLLTAAVPMKTV-ASATCL 145
>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 285
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 5 RELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
RE++ + + L++ DGS +SQG T VVA++ GPV A+ + K V+V
Sbjct: 14 REMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQED--YRKCGVQVYVNRAVR 71
Query: 58 -PKSG----LSFVQDRLKESVIKSTCESALLTMLH--------PRTSVILTIQELQDQGS 104
P++G L + R+++ + + E L + PR + + + L D G+
Sbjct: 72 IPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGA 131
Query: 105 LLSCCINAACLALINSGISMRYILAAVSCI 134
LLS NA AL+++G+ R +AAVS +
Sbjct: 132 LLSVATNALMCALLDAGVPCRTTVAAVSIV 161
>gi|313212644|emb|CBY36592.1| unnamed protein product [Oikopleura dioica]
gi|313225048|emb|CBY20841.1| unnamed protein product [Oikopleura dioica]
Length = 232
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
+E++ +L LSR DGS + VV + GPVEAK ++ + +V VI P S
Sbjct: 17 KEVQVRLGCLSRCDGSAMLVSELGTVVCGVNGPVEAKEREQDPTRVTVNVILHPPSNQQT 76
Query: 65 VQ-DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
R E I S + +PR + + +Q L+ + ++ +N A LA++++GI
Sbjct: 77 GPIHRQIERTISGLLASLVQKEANPRCQIQIILQPLESE-FCVTPLVNCAILAMLDAGIQ 135
Query: 124 MRYILAA 130
M ++ A
Sbjct: 136 MHHVAAG 142
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 1 MDSLRELKSQ-----LNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV-- 52
+D R L+++ LS DGS + GQ+ V A ++GP E+ Q+ DK V
Sbjct: 15 LDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTC 74
Query: 53 EVIFRPKSGLSFV----QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
EV +G + + +L E + + S +L +P + + + I+ LQ G+
Sbjct: 75 EVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGNE 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCI 134
C+NAACLALI++ ++MR AV CI
Sbjct: 135 KIACVNAACLALIDANVAMR---DAVCCI 160
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 18/149 (12%)
Query: 1 MDSLRELKSQ-----LNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASV-- 52
+D R L+++ + LS DGS + GQ+ V A ++GP E+ Q+ DK V
Sbjct: 15 LDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTC 74
Query: 53 EVIFRPKSGLSFV----QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
EV +G + + +L E + + S +L +P + + + I+ LQ G+
Sbjct: 75 EVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGNE 134
Query: 106 LSCCINAACLALINSGISMRYILAAVSCI 134
C+NAACLALI++ ++MR AV CI
Sbjct: 135 KIACVNAACLALIDANVAMR---DAVCCI 160
>gi|344229744|gb|EGV61629.1| hypothetical protein CANTEDRAFT_98824 [Candida tenuis ATCC 10573]
Length = 234
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKES 72
+L DGS + G+T V+ S+ GP+E KI++ + + AS+E+I RP G + ++ L
Sbjct: 7 VLENVDGSAELTNGRTKVLVSVSGPIEPKIKQELPNLASLEIILRPSIGTANTRENLLTD 66
Query: 73 VIKSTCESALLTMLHPRTSVILTIQEL 99
++S S ++ +PR + + +Q L
Sbjct: 67 KLRSILSSLIIRHKYPRQLIQVVVQVL 93
>gi|346322418|gb|EGX92017.1| ribosomal protein S5 domain 2-type fold domain containing protein
[Cordyceps militaris CM01]
Length = 252
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M + E ++ L L ++DGS +S V +++ GP+EA+ + +A ++V RP +
Sbjct: 1 MAPIAEPQADLAPLPKADGSATYSYNGYTVTSAVNGPIEAQRRDENPFEAIIDVNIRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSL 105
G+ +R+ ES+++ + PR+ + +T+Q + Q ++
Sbjct: 61 GVGGTAERVLESILQRALRQLIPIRNFPRSMIQITLQVTETPENAYANTKVVQAQLNLAI 120
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIIN--DKNEVILDANQIQSN 151
+ ++AA L+L+ I ++ I AV+ + D ++ D + +++
Sbjct: 121 IPVLLHAAILSLLTGAIPLKTIATAVTLAVRGADGGGIVADPSAREAD 168
>gi|380492438|emb|CCF34604.1| exosome complex subunit Rrp46 [Colletotrichum higginsianum]
Length = 243
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 8 KSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQD 67
+++++ L R+DGS FS+ VV+S+ GP+E + + ++ V+V+ RP +G+ +
Sbjct: 8 QARISHLPRADGSATFSRNGYCVVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTAE 67
Query: 68 RLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSLLSCCINA 112
R E+V++S+ + PR + +T+Q + Q LL ++
Sbjct: 68 RQLENVLQSSLRQLVPVKSFPRCLIQITLQVTETPQNDYANSKIVQAQSSLPLLPALFHS 127
Query: 113 ACLALINSGISMRYILAAVS-CIINDKNEVILDANQIQ 149
A L L+++ + ++ I + ++ + ++++ D + ++
Sbjct: 128 AILGLLSAAVPLKGIATCTTLAVLENGSKIVADPSPLE 165
>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
98AG31]
Length = 319
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R L L+ LSR+DGS F+ G V+ +M GP E K+ A+VEV P S L
Sbjct: 14 IRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHATVEVNVLPISSLP 73
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC-------------- 109
+ IKS + +PR+ + + +Q L S
Sbjct: 74 GPSSKSSAQSIKSFISPIIYLEQYPRSLIQINLQTLSKPSERWSSTRKPSRLGFEENESI 133
Query: 110 ------INAACLALINSGISMRYILAAVSCII 135
+NA+ +AL++ G+ M + AV+ I
Sbjct: 134 SERAALMNASSIALLDGGVGMSGVGIAVAVAI 165
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPK 59
+ LR +K Q +L+R+DGS G ++ +YGP EA + + ID A V+ +
Sbjct: 24 FNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVKARY--- 80
Query: 60 SGLSFVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ +F D K VI S+++ PR + + I+ LQ
Sbjct: 81 NMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIA 140
Query: 109 CINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
+ AA +AL ++G+ MR ++ V C ++LD ++ + N
Sbjct: 141 GLTAATVALADAGVPMRDMV--VGCTAGKVDGHMVLDLSKEEDN 182
>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
carolinensis]
Length = 188
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS 132
+K T E+A+LT L+PR+ + + +Q LQ G +NAA LA+I++GI +R Y+ A+ +
Sbjct: 46 LKQTFEAAILTQLYPRSQIDIYVQILQADGGNYCASVNAATLAVIDAGIPLRDYVCASSA 105
Query: 133 CIIND 137
I D
Sbjct: 106 GFIED 110
>gi|357461605|ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355490132|gb|AES71335.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 276
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
VI+ T E +LT L PR+ + + +Q LQ G S CINAA LAL ++GI +R ++ + S
Sbjct: 96 VIRQTMEERILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPVRDLVTSCS 155
Query: 133 C 133
Sbjct: 156 A 156
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR +K + +L R+DGS G ++AS+YGP E+ I++ + V + R
Sbjct: 19 DELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGV-IRVRYNMA 77
Query: 62 LSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
V DR + + + E AL+ PR+ V ++I+ ++ +G I
Sbjct: 78 PFSVDDRKRPGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVIEAEGGTRCAGIT 137
Query: 112 AACLALINSGISMRYILAAVSCIINDKN-EVILDANQ 147
AA +AL ++GI M+ I+ V C N E++LD ++
Sbjct: 138 AAAVALADAGIPMKDIV--VGCAAGKVNDEIVLDLSE 172
>gi|339237159|ref|XP_003380134.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
Length = 232
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID----------KASVEVI 55
E + +N + GS +T ++ ++ GP EA K+ D K +V V
Sbjct: 23 EQSNPMNCVESFRGSAYIEMNKTKILCTVIGPREA--HKSSEDSMGMLLANCGKLTVSVR 80
Query: 56 FRPKSGLSFVQDRLKE----------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
F P + +Q R KE ++I+ +S +L +P+ ++L I LQD G++
Sbjct: 81 FAPFAKTPRLQRRRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNV 140
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNE 140
L +N +AL+++GI + +L + S + DK++
Sbjct: 141 LCASLNCCTMALVSAGIEIYDLLTSASETLEDKSD 175
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-------TIIDKASVE 53
+ LR L + + +DGS G T V+ + GP E + + D A+V
Sbjct: 20 WNELRRLHALIRTQDAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQANASRDGATVN 79
Query: 54 V---------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
V + R K G + + + E I S L T + P +S+ +++ L GS
Sbjct: 80 VNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISISLHVLSQDGS 139
Query: 105 LLSCCINAACLALINSGISMRYILAA 130
LL+ +NA LALI++GI M +AA
Sbjct: 140 LLAALLNATTLALIDAGIPMNDYIAA 165
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA-----SVEVI 55
+ LR L++Q+ +DGS G T V+ + GP E + + ++ +V ++
Sbjct: 20 WNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDAAVNVSIV 79
Query: 56 FRPKSGLSFVQDRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
+G S V DR K E+ + S L T L P +S+ +++ L GS
Sbjct: 80 V---AGFSSV-DRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQDGS 135
Query: 105 LLSCCINAACLALINSGIS 123
LL+ +NA LAL+++G S
Sbjct: 136 LLAALLNATTLALVDAGHS 154
>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 262
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 24 SQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIFRPKSGLSFVQD--RLKE--SV 73
+QG T V S++GP E A + ++ V + +G + RL+E +
Sbjct: 44 TQGLTTVEVSVFGPREPRNRGLASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAA 103
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
I+ T E ++T L+PR+ + + +Q L G +L INA LALI++GI++ ++++S
Sbjct: 104 IRQTFEPVIMTHLYPRSEIAIHVQVLSADGGILPTSINATTLALIDAGIALLDYVSSIS 162
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKS 60
+ LR + Q SDG V QG T V+AS+ GP + + D A++ F
Sbjct: 10 NELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATIICQFTKPP 68
Query: 61 GLSFVQDRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
S +R K + I+ + T +P + + + ++ +Q GS +C
Sbjct: 69 FASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSDGSEFACA 128
Query: 110 INAACLALINSGISMRYILAAVS 132
+NA LAL ++GI M Y+++A +
Sbjct: 129 VNATTLALTDAGIEMHYLVSAAT 151
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 37/167 (22%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI----------QKTIIDKA 50
+ LR L +Q+ +DGS F G T V+ + GP E + Q + D A
Sbjct: 20 WNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQASGRDAA 79
Query: 51 SVEV---------IFRPKSG--------------LSFVQDRLKESVIKSTCESALLTMLH 87
S+ V + R K G L++ + I+ T AL + +H
Sbjct: 80 SIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAKALSSTVH 139
Query: 88 ----PRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAA 130
P +S+ +++ L GSLL+ INAA LA+I++GI M +AA
Sbjct: 140 THLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAA 186
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR ++++ I+ + GS F G T +A++YGP E K + I+K + +I
Sbjct: 11 FDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRH--IEKVNKGIIVCKYD 68
Query: 61 GLSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
L F V DR + VI + A++ PR V + I Q
Sbjct: 69 MLPFSVPDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAGTRCAS 128
Query: 110 INAACLALINSGISMRYILAAVSC 133
+ AA +A ++G+ MR ++AAV+
Sbjct: 129 LTAASMACADAGLPMRDLVAAVAA 152
>gi|401414266|ref|XP_003871631.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487849|emb|CBZ23093.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 324
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 23/151 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV------IFR 57
LR + +L+ ++ DGS ++QGQT V+ S++GP AK + D V+V +
Sbjct: 16 LRGKEMRLSDMTAFDGSSWYAQGQTAVMVSIHGPTIAKNDE--YDTCIVQVRIQHAGVLA 73
Query: 58 PKSG---LSFVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
P +G + ++R E S+++ST + + PR +++ + ++D G
Sbjct: 74 PAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFVRERFPRCVLVVDVVVIRDDG 133
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCI 134
SL + +NA AL+++G+ R +AAV C+
Sbjct: 134 SLPAVALNAVMSALLDAGLPCRTTMAAV-CV 163
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + QL++LS +DGS IF G T V+A+++GP + + + A++ V + S
Sbjct: 19 LRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIVVCEYSMAAFS 78
Query: 64 FVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ R + VI++T E A+L L PR+ + + +Q LQ G INAA
Sbjct: 79 TGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQADGGTRCAAINAA 138
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDAN 146
LAL +G+ +R ++A+ + D +LD N
Sbjct: 139 VLALAAAGVPLRDLVASCAAGYLDGTP-LLDLN 170
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 26/171 (15%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQ---KTIIDK------- 49
+ LR + Q+N + DGS QG + V+ + GP+E T +D
Sbjct: 19 WNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDPNGPVLSL 78
Query: 50 -------ASVEVIFRPKSGLSFVQDRLKE-SVIKSTCESALLTML-HPRTSVILTIQELQ 100
AS E RPK+ RL+E S+I C + + + RT++ + + L
Sbjct: 79 NINYPPFASNERKKRPKN-----DRRLQEISIILKRCFMKTIVLKNYSRTAIDINLTVLA 133
Query: 101 DQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
G LL+C NA LALI++GIS+ ++AVS + D+ +LD N ++ N
Sbjct: 134 MDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQTP-LLDMNALEEN 183
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + QL++LS +DGS IF G T V+A+++GP + + ++ ++ V + S
Sbjct: 19 LRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALVVCEYSMAAFS 78
Query: 64 FVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ R + VI++T E A++T L PR+ + + +Q LQ G INAA
Sbjct: 79 TGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQADGGTRCAAINAA 138
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL +G+ +R ++A + D +LD N + +
Sbjct: 139 VLALAAAGVPLRDLVAGCAAGYLDGT-ALLDLNYTEDS 175
>gi|241951704|ref|XP_002418574.1| exosome 3->5 exonuclease complex component, rRNA processing,
putative; ribosomal rna-processing protein [46],
putative [Candida dubliniensis CD36]
gi|223641913|emb|CAX43877.1| exosome 3->5 exonuclease complex component, rRNA processing,
putative [Candida dubliniensis CD36]
Length = 276
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 30 VVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESA-LLTMLHP 88
++ S+ GP+E K ++ + ++AS+E+ P GLS +++L E+ ++S ++ ++ +P
Sbjct: 53 LITSINGPIEPKQRQELPNRASLEINIYPSIGLSTTKEKLLENKLRSILQNNIIINYKYP 112
Query: 89 RTSVILTIQ--------------------ELQDQGSLLSCCINAACLALINSGISMRYIL 128
R + ++IQ L D +L++CC ALI++ I+M Y
Sbjct: 113 RQLIQISIQFLISNNNSNGGSNSSNGMMTNLFDLNALINCC----YFALIDANIAMNYSF 168
Query: 129 AAVSCIINDKNEVIL 143
++ II+ + +I+
Sbjct: 169 VSIIIIIDHQGNLII 183
>gi|390344519|ref|XP_785829.2| PREDICTED: exosome complex component RRP41-like, partial
[Strongylocentrotus purpuratus]
Length = 194
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS 132
++ T E+ + T L+PR+ + + +Q LQ G C+NAA LA+IN+GI M+ Y+ A S
Sbjct: 51 LQRTFEATIQTHLYPRSQIDIFVQILQADGGNYCACVNAATLAIINAGIPMKDYVCACSS 110
Query: 133 CIIND 137
+N+
Sbjct: 111 GYVNN 115
>gi|413942153|gb|AFW74802.1| hypothetical protein ZEAMMB73_831356 [Zea mays]
Length = 421
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 28/126 (22%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N+L R+ G ++QG VV+A++YGP ++ +KAS+E +++P++G
Sbjct: 14 NQLRLFTCTGNLLHRAHGCARWAQGGIVVLATVYGPKPGTVRGRTPEKASIEAVWKPRTG 73
Query: 62 --------------------------LSFV--QDRLKESVIKSTCESALLTMLHPRTSVI 93
+ FV QDR E +K T +S L +H +
Sbjct: 74 QIDTPLFPSSSFCPTAVRVTGSLKWRVVFVGRQDREYEMTLKRTLQSICLLTVHANATTS 133
Query: 94 LTIQEL 99
+ +Q L
Sbjct: 134 VVLQNL 139
>gi|410084138|ref|XP_003959646.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
gi|372466238|emb|CCF60511.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
Length = 220
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
++ Q L++ DGS + V+ S+ GP+E K ++ + + ++EV RP G+ +
Sbjct: 1 MQVQTGYLNKVDGSSHYENKSVKVICSVTGPIEPKARQELPTQLALEVTVRPAIGVPTTR 60
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQ--DQGSLLSC-----CINAACLALIN 119
+ + I+ + +PR +T+Q L+ ++ +L + CIN+ ALI+
Sbjct: 61 EITLQDKIRGVISPIICRYKYPRQLCQITLQILESGEEETLFNVKELIGCINSTVFALID 120
Query: 120 SGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ I++ I VS + I+D + Q
Sbjct: 121 AAIAINSIAVGVSMAVMGDGTFIVDPSNEQ 150
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE----AKIQKTIID-----KAS 51
+ LR L++Q++ S S GS S G T ++ +++GP E + ++D
Sbjct: 21 WNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGSATEALVDIDVNIAGF 80
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
V + ++G S Q + +KS +S L T L+P +++ + + L GSL + IN
Sbjct: 81 AGVDRKRRAGGSDRQSSQLSTALKSAFQSHLHTYLYPHSTITVQVSVLSSDGSLFAAAIN 140
Query: 112 AACLALINSGISMRYILAA 130
A LAL+++GI M +L A
Sbjct: 141 ACTLALVDAGIPMPGLLCA 159
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-------------D 48
+ LR +++ + +DGS G T V+ + GP E + + D
Sbjct: 244 NELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGGGGGGGGGD 303
Query: 49 KASVEVIFR-PKSGLSFV-------QDRLKE---SVIKSTCESALLTMLHPRTSVILTIQ 97
EVI +G S V QD+ + + I T + L T L+PR+++ +++
Sbjct: 304 AKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPRSTITISLH 363
Query: 98 ELQDQGSLLSCCINAACLALINSGISM 124
L GSLL+ INAA LA +++GI M
Sbjct: 364 VLSQDGSLLAALINAATLAAVDAGIPM 390
>gi|378730426|gb|EHY56885.1| hypothetical protein HMPREF1120_04949 [Exophiala dermatitidis
NIH/UT8656]
Length = 259
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 25/166 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA-SVEVIFRPK 59
+ LR + + ++ SDGS + + G T+V+ ++ GP E + Q+ + E+ P
Sbjct: 21 WNELRRITASISTQPSSDGSSLLTMGNTMVLCTVTGPREGRGQRDNTNATVETEINVAP- 79
Query: 60 SGLSFVQ-DRLK-----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
F Q DR + +S + S +S L T L+PR+++ +++ L G+LL+
Sbjct: 80 ----FAQMDRRRRIKNDKRIQELQSTVSSAFQSHLFTHLYPRSTISISLHVLSLDGALLA 135
Query: 108 CCINAACLALINSGISMRYILAAVS----CIIND---KNEVILDAN 146
C+NAA LAL+++GI M ILAA+S +D + E ILD N
Sbjct: 136 ACLNAASLALVDAGIPMPSILAAISSGSVTPADDSSVRPEPILDLN 181
>gi|408404985|ref|YP_006862968.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365581|gb|AFU59311.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 247
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+D LRE+K + + +DGS G+ ++A++YGP E + S + R +
Sbjct: 20 IDELREVKITVGTVKNADGSAFIEFGKNKILAAVYGPREVHPKHMA---QSDRCVLRCRY 76
Query: 61 GLS-FVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+S F D K V++ E AL+ +PR ++ + ++ LQ G
Sbjct: 77 HMSPFSTDTRKNPAPSRREVEISKVMREALEPALMLEDYPRAAIDVFVEVLQSDGGSRCA 136
Query: 109 CINAACLALINSGISMRYILAA-VSCIINDKNEVILDANQIQS 150
I AA +AL ++GI+MR ++AA + ++DK ++LD N +
Sbjct: 137 GITAAAVALADAGINMRDLVAACAAGKVDDK--IVLDINDTED 177
>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973659|gb|EED91989.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 145
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 20/138 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIFRPKSG 61
+LR L ++L+ L R+DGS G T ++ +++GP+ +I + D+A V V F G
Sbjct: 13 TLRPLSAELSPLHRADGSASLKCGNTHIMVAIHGPIAPRISHREKYDRAVVNVAF--SKG 70
Query: 62 L--------------SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
L V+ + S+C ++ +PR + + IQ +Q GS+L
Sbjct: 71 LMMMAGSAAGGGSSGDVVEHDTADGDALSSC---IMLEKYPRCVIQVVIQIVQADGSVLG 127
Query: 108 CCINAACLALINSGISMR 125
N A +AL+++G++MR
Sbjct: 128 SATNCAVMALMDAGVAMR 145
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGGGGGGGQSKNA 79
Query: 49 KASVEVIFRPKSGLSFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQE 98
+ +V ++ +G S V + + +S I ++L T L P +++ +++
Sbjct: 80 EVAVNIVI---AGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINISLHV 136
Query: 99 LQDQGSLLSCCINAACLALINSGISMRYILAAVSC------IINDKN-EVILDANQ 147
L GSLL+ INAA LA +++GI M +AA + ND+ + +LD N
Sbjct: 137 LSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNA 79
Query: 49 KASVEVIFRPKSGLSFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQE 98
+ +V ++ +G S V + + +S I ++L T L P +++ +++
Sbjct: 80 EVAVNIVI---AGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINISLHV 136
Query: 99 LQDQGSLLSCCINAACLALINSGISMRYILAAVSC------IINDKN-EVILDANQ 147
L GSLL+ INAA LA +++GI M +AA + ND+ + +LD N
Sbjct: 137 LSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIF-- 56
R L + +S DG G + V A++YGP E K + I V F
Sbjct: 24 RRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAG 83
Query: 57 ---RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
R + S + + + SV+ S +L +P + + + I+ L+ GS + CINAA
Sbjct: 84 ERRREQQRYSRLSEDISASVL-DVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAA 142
Query: 114 CLALINSGISMRYIL 128
CLALI++ I+MR ++
Sbjct: 143 CLALIDASIAMRDVV 157
>gi|403221264|dbj|BAM39397.1| exosome complex exonuclease [Theileria orientalis strain Shintoku]
Length = 255
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 3 SLRELKSQLNILS-------------RSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--I 47
SLR QLN L DG + G+T VVA + E + + TI
Sbjct: 14 SLRPFYFQLNPLKSGPSCKVVVGNIKNEDGILTGIGGRTSVVALLMFSHEPRSKNTIGSF 73
Query: 48 DKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
K +EV RP+SG R E+V+ + + + ++ L +Q ++D G LLS
Sbjct: 74 HKPYMEVFVRPQSGPIRSSIRAMEAVLVKVMQRVVKGDRLGKVNLSLRLQIIEDSGGLLS 133
Query: 108 CCINAACLALINSGISMRYILAAVSCII------NDKNE-VILDANQIQS 150
C+NA + L SGI M + AVS I D+ E VILD +S
Sbjct: 134 VCLNALVICLSLSGIEMLQVPFAVSVGICRTGEEEDRQERVILDPTDYES 183
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFRPKS 60
+ LR + Q SDG V+ QG T V+AS+ GP + + + D+A++ +
Sbjct: 238 NELRRVFCQFQT-GNSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPDEATLVCKYNKPP 296
Query: 61 GLSFVQDRLK-------ESVIKSTCESALLTML----HPRTSVILTIQELQDQGSLLSCC 109
S +R K S +T E ++ +P + + + ++ LQ GS +C
Sbjct: 297 FSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLEVLQSDGSEFACA 356
Query: 110 INAACLALINSGISMRYILAAVS 132
+NAA LAL ++GI MR + A +
Sbjct: 357 VNAATLALTDAGIEMRSLACAAT 379
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNA 79
Query: 49 KASVEVIFRPKSGLSFVQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQE 98
+ +V ++ +G S V + + +S I ++L T L P +++ +++
Sbjct: 80 EVAVNIVI---AGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINISLHV 136
Query: 99 LQDQGSLLSCCINAACLALINSGISMRYILAAVSC------IINDKN-EVILDANQ 147
L GSLL+ INAA LA +++GI M +AA + ND+ + +LD N
Sbjct: 137 LSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
>gi|392575531|gb|EIW68664.1| hypothetical protein TREMEDRAFT_31912 [Tremella mesenterica DSM
1558]
Length = 278
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
R + L L R+DGS FS G T +AS GP+E +I K +++E+I RP +
Sbjct: 13 RPISINLGELDRADGSARFSFGSTSALASSSGPLEVRILKENPTGSTLEIIHRPLDSIPS 72
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
R E ++S S L HPR+ + IQ S + +N+
Sbjct: 73 TSSRSFEQSLQSIFSSILQLDKHPRSMIQSVIQSFSPS-SFTTTSVNS 119
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIF-- 56
R L + +S DG G + V A++YGP E K + I V F
Sbjct: 24 RRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAG 83
Query: 57 ---RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
R + S + + + SV+ S +L +P + + + I+ L+ GS + CINAA
Sbjct: 84 ERRREQQRYSRLSEDISASVL-DVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAA 142
Query: 114 CLALINSGISMRYIL 128
CLALI++ I+MR ++
Sbjct: 143 CLALIDASIAMRDVV 157
>gi|388502864|gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
VI+ T E +LT L PR+ + + +Q LQ G S CINAA LAL ++GI M
Sbjct: 37 VIRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPM 88
>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
Length = 172
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 79 ESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK 138
E + T L+PR+ + + +Q LQ G +L CINA LAL N+GI + + AV+ ++
Sbjct: 22 EPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPLLDFVCAVTGGVHST 81
Query: 139 NEVILDANQIQSN 151
+ +LD Q++ N
Sbjct: 82 SP-LLDLTQLEEN 93
>gi|342184387|emb|CCC93869.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE------AKIQKTIIDKASVEVIFRP 58
R L + +S DG + G + V A++YGP E K + I + +V+
Sbjct: 24 RRLTLEFGKISGCDGCCTLTTGLSHVCATVYGPREVSSRLDGKYNEVTI---TCDVVVAA 80
Query: 59 KSG--------LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+G S + + + SV+ S +L +P + + + ++ L+ G+ + CI
Sbjct: 81 FAGERRREHQRRSRLSEEISASVL-DVARSVVLLSQYPNSQIHICVELLKQDGNDKAACI 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVI-LDANQIQS 150
NAACLALI++ I+MR ++ A++ + D E++ L +I S
Sbjct: 140 NAACLALIDASIAMRDVVYALTVGLIDGLEIVDLTTEEIHS 180
>gi|342319558|gb|EGU11506.1| Hypothetical Protein RTG_02676 [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 51/155 (32%)
Query: 15 SRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII------------------------DKA 50
+++DG + S G T V +S++GP E Q+T D+
Sbjct: 50 AKADGYALASHGLTTVSSSVFGPREP--QRTGPWSSTGTGQSAGGGVGQAAGGQQKGDRG 107
Query: 51 SVEVIFRPKSGLSFVQDRLKE---------------------SVIKSTCESALLTMLHPR 89
SV V + G++ +R+ + + +K+T E LL L+PR
Sbjct: 108 SVNV----EVGVAGWGERVGQGGSSEGGLRRGGKDRRTIELAAAVKNTFEPVLLLHLYPR 163
Query: 90 TSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+S+ + +Q L++ GS+L INA LALI++G+ +
Sbjct: 164 SSIDIYLQILENDGSVLQAAINATSLALISAGLPL 198
>gi|402588786|gb|EJW82719.1| hypothetical protein WUBG_06369 [Wuchereria bancrofti]
Length = 226
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL- 62
LR L++QL+ L R+DGS QG TV+ + GP K + ++ ++++++ G
Sbjct: 16 LRGLRAQLSFLPRTDGSCALEQGATVIWCGINGPGNVSSSKRLSERLVIDILYKHTRGPK 75
Query: 63 -SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
S +RL + +K T + + +PR + +T+Q LQ G + +NAACLA ++ G
Sbjct: 76 ESVKINRLLSAALKHTIDH----VHYPRVFLNVTLQLLQKGGCEAAAALNAACLAALDLG 131
Query: 122 ISMRYILAAVSCIINDKNEVILD 144
I M + V+ ++ + +ILD
Sbjct: 132 IIMNGMFCGVTVAVS-QGHLILD 153
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGP------VEAKIQKTIIDKASVEVIF-- 56
R L + +S DG G + V A++YGP +E K + I V F
Sbjct: 24 RRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTITCDVVVAAFAG 83
Query: 57 ---RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
R + S + + + SV+ S +L +P + + + I+ L+ GS + CINAA
Sbjct: 84 ERRREQQRYSRLSEDISASVL-DVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAA 142
Query: 114 CLALINSGISMRYIL 128
CLALI++ I+M+ ++
Sbjct: 143 CLALIDASIAMKDVV 157
>gi|388580057|gb|EIM20375.1| hypothetical protein WALSEDRAFT_69929 [Wallemia sebi CBS 633.66]
Length = 240
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +RE+ +R DG+V FS G V+ S GPVEA ++ I+D+ +++V FR +
Sbjct: 16 NEVREINCTRESNARVDGAVRFSFGDVEVLGSATGPVEANLRDEIVDRCTIDVNFRSINN 75
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
++ VQ + I+ S ++ PR+ V +Q L
Sbjct: 76 VTGVQYKELADQIEGALSSVVVGEQLPRSLVRFVVQTL 113
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII----------DKA 50
+ LR L + + +DGS G T V+ + GP E + Q+ D A
Sbjct: 20 WNELRRLHALIRTQDAADGSSYLEIGHTKVMCVVSGPSEQQQQQQAQRRGGQANATRDGA 79
Query: 51 SVEV---------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQD 101
+V V + R K G + + + E I S L T + P +S+ +++ L
Sbjct: 80 TVHVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKAFSSNLHTHIFPHSSIAISLHVLSQ 139
Query: 102 QGSLLSCCINAACLALINSGISMRYILAA 130
GSLL+ +NA LAL+++GI M +AA
Sbjct: 140 DGSLLAALLNATTLALVDAGIPMTDYIAA 168
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 18 DGSVIFSQGQTVVVASMYGP------VEAKIQKTIID-KASVEVIFRPKSGLSFVQDRLK 70
DG G V AS+YGP +E+K + II + ++ K + +L
Sbjct: 37 DGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKLS 96
Query: 71 ESVIKSTCE---SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI 127
E + + E S +L +P + + + ++ L+ GS + CINAACLAL+++ ++MR I
Sbjct: 97 EEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRDI 156
Query: 128 LAAVSC-IINDKNEVILDANQIQS 150
+ A + +IN + V L +++S
Sbjct: 157 VYAQTVGLINAVDVVDLTTEEMRS 180
>gi|407849042|gb|EKG03905.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 252
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 18 DGSVIFSQGQTVVVASMYGP------VEAKIQKTIID-KASVEVIFRPKSGLSFVQDRLK 70
DG G V AS+YGP +E+K + II + ++ K + +L
Sbjct: 37 DGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKLS 96
Query: 71 ESVIKSTCE---SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI 127
E + + E S +L +P + + + ++ L+ GS + CINAACLAL+++ ++MR I
Sbjct: 97 EEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRDI 156
Query: 128 LAA 130
+ A
Sbjct: 157 VYA 159
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR L +Q++ +DGS G T V+ + GP E + + S + + K
Sbjct: 20 WNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQKKGTVGSAQATGQ-KE 78
Query: 61 GLSFVQD---------------------RLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
G S V + + E I+ + L T L P +++ +++ L
Sbjct: 79 GASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHLFPHSTITVSLHVL 138
Query: 100 QDQGSLLSCCINAACLALINSGISMR-YILA 129
GSLL+ INA LA+I++GI M YI A
Sbjct: 139 SQDGSLLAALINATTLAVIDAGIPMTDYITA 169
>gi|407407934|gb|EKF31543.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi
marinkellei]
Length = 252
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 18 DGSVIFSQGQTVVVASMYGP------VEAKIQKTIID-KASVEVIFRPKSGLSFVQDRLK 70
DG G + V AS+YGP +E K + I+ + ++ K + +L
Sbjct: 37 DGCCTVMSGLSTVCASVYGPREVTNRLEGKYNECIVTCEVAIAAFAGEKRRAPQRRSKLS 96
Query: 71 ESVIKSTCE---SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI 127
E + + E S +L +P + + + ++ L+ GS + CINAACLAL+++ ++MR I
Sbjct: 97 EEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRDI 156
Query: 128 LAA 130
+ A
Sbjct: 157 VYA 159
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII--------DKASV 52
+ LR + +Q++ SDGS S G T V+ ++ GP + ++I +KA V
Sbjct: 20 WNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSNAGEKAEV 79
Query: 53 EV---------IFRPKSGLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQD 101
V + R K G + R++E + + +T LLT L ++++L++ L
Sbjct: 80 RVEISFAGFAGVDRKKYGRN--DKRIQELSNTLSTTFTPHLLTTLTSNSTILLSLHILSL 137
Query: 102 QGSLLSCCINAACLALINSGISM-RYILAAVSCII------NDKNEVILDAN 146
GSLLS INA+ LALI++GI M YI A + ++K + +LD N
Sbjct: 138 DGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLN 189
>gi|322708621|gb|EFZ00198.1| hypothetical protein MAA_03975 [Metarhizium anisopliae ARSEF 23]
Length = 254
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M + E +QL+ L +DGS FS V A++ GP+EA + +A ++V+ RP +
Sbjct: 1 MTASSEPLAQLSNLPNADGSATFSNCGYAVTAAVNGPIEAPRRDENPFEALIDVVVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ---------------ELQDQGSL 105
G+ +R ES++++ + PR ++ +T+Q + Q ++
Sbjct: 61 GVGGTAERQIESMLQAALRQLIPIRNFPRCTIQVTLQIMEAPENAYQNTKLLQPQQNLAI 120
Query: 106 LSCCINAACLALINSGISMR 125
+ +AA L L+ + I ++
Sbjct: 121 IPALFHAAILGLLTAAIPLK 140
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
R+++ + +L +DGS F G T V+ +++GP E + D+ ++ ++ S
Sbjct: 20 RQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAIIKCEFSQAAFST 79
Query: 65 VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
+ R + VI+ E+ +L L PR+ + + IQ LQ G + + INAA
Sbjct: 80 GERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQADGGVRAAAINAAV 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LA+ N+GI M+ +AA S D +LD N ++
Sbjct: 140 LAIANAGIPMKDTMAACSAGYLDGTP-LLDLNYVEEG 175
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
LS++ GS G T V+A +YGP EA+ ++ +F + L D +E
Sbjct: 4 GTLSQAAGSAYAEFGNTKVIAGVYGPREAERKE----------VFSTEGRLQCDNDEERE 53
Query: 72 -SV-IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILA 129
SV +++ E+A+ P+ +V + L+ G+ L+ CI AA LAL ++GI M +++
Sbjct: 54 LSVQLQTALEAAVRLQTFPKANVDIYCLVLESAGADLAVCICAASLALADAGIEMEDMVS 113
Query: 130 AVS 132
A S
Sbjct: 114 ACS 116
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR--P 58
+ LR++ ++ ++ S++DGS QG T +A++YGP E + + + + D+A + V F P
Sbjct: 20 NELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHRMQALSDRAIINVEFNIAP 79
Query: 59 KSGLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
S +R K S I+ T E +LT PR+ + + +Q Q+ G +
Sbjct: 80 FS----TSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIYLQVFQNDGGI 133
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 18 DGSVIFSQGQTVVVASMYGP------VEAKIQKTIID-KASVEVIFRPKSGLSFVQDRLK 70
DG G V AS+YGP +E+K + II + ++ K + +L
Sbjct: 37 DGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKLS 96
Query: 71 ESVIKSTCE---SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI 127
E + + E S +L +P + + + ++ L+ GS + CINAACLAL+++ ++MR I
Sbjct: 97 EEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDACVAMRDI 156
Query: 128 LAA 130
+ A
Sbjct: 157 VYA 159
>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
RE+ + + S GS G+T V+ ++ GP + ++ K +++ S+
Sbjct: 14 REIACEKGLCISSQGSSRVRVGKTEVIVNIVGPKQMVFREIETGKVNIK-------AKSY 66
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
++ ++ E++L +P +++ +++ + D G L +C +NA LAL+++G M
Sbjct: 67 PENPTINKIVADAIENSLKCDAYPDSNLEVSVTIVCDDGGLKACAVNATILALVDAGFEM 126
Query: 125 RYILAAVSC------IINDKN 139
++LAA S ++ND N
Sbjct: 127 NHLLAASSLAVKGDILVNDPN 147
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKSGLSFVQDRLK----- 70
SDG V QG T V+AS+ GP +++ D A++ F S +R K
Sbjct: 31 SDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATITCQFTKPPFASTSGERRKLSSKD 90
Query: 71 ------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+ I+ + T +P + + + ++ +Q GS +C +NA LAL ++GI M
Sbjct: 91 RSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQSDGSEFACAVNATTLALTDAGIEM 150
Query: 125 RYILAAVS 132
+++A +
Sbjct: 151 DCLVSAAT 158
>gi|397604999|gb|EJK58844.1| hypothetical protein THAOC_20999 [Thalassiosira oceanica]
Length = 291
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 47/180 (26%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFR---- 57
+LR L ++L+ LSRSDGS G T ++ +++GP ++ + D+ +V V F
Sbjct: 14 ALRPLSAELSTLSRSDGSASLRCGNTHILVAVHGPTAPRMSRWEKYDRGAVSVAFSRGLM 73
Query: 58 ----------------------PKS---GLSFVQDRLK-----------------ESVIK 75
P + G +R+K E ++
Sbjct: 74 AHHSSSAGASSSPAPSDGGGPSPPATSGGDGAPGERMKPLPVPLPPGLGASERELEHFLR 133
Query: 76 STCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCII 135
S ++ +PR + + +Q +Q G +L +N A +AL+++G++MR + A +C++
Sbjct: 134 DALSSCIMLERYPRCVIQVVVQIVQADGGVLGTAVNCAVMALMDAGLAMRGLPVASTCVV 193
>gi|398009451|ref|XP_003857925.1| ribosomal RNA processing protein, putative [Leishmania donovani]
gi|322496128|emb|CBZ31199.1| ribosomal RNA processing protein, putative [Leishmania donovani]
Length = 324
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 23/151 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV------IFR 57
LR + +L+ ++ DGS ++QGQT V+AS++GP AK + D V+V +
Sbjct: 16 LRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHGPTVAKNDE--YDTCIVQVRVQHAGVLA 73
Query: 58 PKSGLS---FVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
P +G + ++R E S+++ST + + PR +++ + ++D G
Sbjct: 74 PAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVLVVDVVVVRDDG 133
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCI 134
SL + +NA AL+++G+ R +AAV C+
Sbjct: 134 SLPAVALNAVMSALLDAGLPCRTTMAAV-CV 163
>gi|146075517|ref|XP_001462721.1| putative ribosomal RNA processing protein [Leishmania infantum
JPCM5]
gi|134066800|emb|CAM65260.1| putative ribosomal RNA processing protein [Leishmania infantum
JPCM5]
Length = 324
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 23/151 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV------IFR 57
LR + +L+ ++ DGS ++QGQT V+AS++GP AK + D V+V +
Sbjct: 16 LRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHGPTVAKNDE--YDTCIVQVRVQHAGVLA 73
Query: 58 PKSGLS---FVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
P +G + ++R E S+++ST + + PR +++ + ++D G
Sbjct: 74 PAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVLVVDVVVVRDDG 133
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCI 134
SL + +NA AL+++G+ R +AAV C+
Sbjct: 134 SLPAVALNAVMSALLDAGLPCRTTMAAV-CV 163
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP---VEAKIQKTIIDKASVEVIFRP 58
D +R QL +S + GS G+T VV ++YGP A+ + + + +V + P
Sbjct: 35 DEMRRPFMQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAP 94
Query: 59 KSGLSFVQDRLK---ESVIKSTCESALLT--MLH--PRTSVILTIQELQDQGSLLSCCIN 111
+ ++R + E + + E AL MLH P+ V + + L+D+G + + IN
Sbjct: 95 FADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIVSVFVTVLEDEGGVFAAAIN 154
Query: 112 AACLALINSGISMRYILAAVSC-IINDKNEVILDANQ 147
A LAL ++ + M ++ A S I+N V+LD ++
Sbjct: 155 CASLALADAAVEMYDVVTASSAGIVN--GSVVLDPSR 189
>gi|340521310|gb|EGR51545.1| predicted protein [Trichoderma reesei QM6a]
Length = 248
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
++L+ L ++DGS FS G + A++ GPVEA+ + +A V+V RP +G+ +R
Sbjct: 6 AELSHLPKADGSANFSFGGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTAER 65
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS---------------LLSCCINAA 113
E++++ + PR V +T+Q ++ + ++ ++AA
Sbjct: 66 QLEAILQPALRHLIAIRNFPRCVVQVTLQVMEAPENAYVNSKVMQPRLNLGIIPSLLHAA 125
Query: 114 CLALINSGISMRYILAAVSCI 134
L L+ + I + + A+ +C+
Sbjct: 126 MLGLLTAAIPLNTV-ASATCL 145
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYG--PVEAKIQ----KTIIDKASVEVIFR 57
LR+L+++L +LS +DGS +F G T V+A+++G PVE + Q + I+ F
Sbjct: 18 LRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIVKCEYAMASFS 77
Query: 58 PKSGLSFVQDRLKES----VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ + + I++T E +LT L PR+ + + +Q LQ G CINAA
Sbjct: 78 TGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQADGGTRCACINAA 137
Query: 114 CLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
C+A + I MR ++A SC ++ +LD N ++ +
Sbjct: 138 CMAAAAAAIPMRDLVA--SCAAGYLESTALLDLNYMEDS 174
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR ++++ ++ + GS F G T +A++YGP E K + I+K VI
Sbjct: 11 FNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRH--IEKVDRGVIVCKYD 68
Query: 61 GLSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
L F V DR K VI + A++ PR + + + Q
Sbjct: 69 MLPFSVPDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCAS 128
Query: 110 INAACLALINSGISMRYILAAVSC 133
+ AA +A ++G+ MR ++AAV+
Sbjct: 129 LTAASMACADAGLPMRDLVAAVAA 152
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 28/166 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNA 79
Query: 49 KASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ +V ++ +G S V DR + + L T L P +++ +++ L GSLL+
Sbjct: 80 EVAVNIVI---AGFSSV-DRKRRGRGDN-----LHTHLFPHSTINISLHVLSQDGSLLAA 130
Query: 109 CINAACLALINSGISMRYILAAVSC------IINDKN-EVILDANQ 147
INAA LA +++GI M +AA + ND+ + +LD N
Sbjct: 131 LINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 176
>gi|400602922|gb|EJP70520.1| exosome complex subunit Rrp46 [Beauveria bassiana ARSEF 2860]
Length = 273
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M + E +++L L ++DGS +S V ++ GP+EA+ + +A ++V RP +
Sbjct: 1 MAPIAEPRAELAPLPKADGSATYSYSGYTVTGAVNGPIEAQRRDENPFEALIDVNVRPAA 60
Query: 61 GL---------SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ-------------- 97
G+ + +RL ES+++ + PR+ + +T+Q
Sbjct: 61 GVGADEGIWRDTGTAERLLESILQRALRQLIPIRNFPRSMIQITLQVTETPENAYANTKV 120
Query: 98 -ELQDQGSLLSCCINAACLALINSGISMRYILAAVSCII 135
+ Q +++ ++AA L+L+ + I ++ I AV+ +
Sbjct: 121 VQAQLNLAIIPALLHAAILSLLTAAIPLKTIATAVTLAV 159
>gi|389592734|ref|XP_003721638.1| putative ribosomal RNA processing protein [Leishmania major strain
Friedlin]
gi|321438170|emb|CBZ11922.1| putative ribosomal RNA processing protein [Leishmania major strain
Friedlin]
Length = 324
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 23/163 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV------IFR 57
LR + +L+ ++ DGS ++QGQT V+ S++GP AK + D V+V +
Sbjct: 16 LRGKEMKLSDMTTFDGSSWYAQGQTAVMVSIHGPTIAKNDE--YDTCIVQVRIQHAGVLA 73
Query: 58 PKSG---LSFVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
P +G + ++R E S+++ST + L PR +++ + ++D G
Sbjct: 74 PAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFLRERFPRCVLVVDVIVVRDDG 133
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
SL + +NA AL+++G+ R +AAV C+ ++ D+N
Sbjct: 134 SLPAVALNAVMSALLDAGLPCRTTMAAV-CVAVLTHDGGADSN 175
>gi|358379900|gb|EHK17579.1| hypothetical protein TRIVIDRAFT_43493 [Trichoderma virens Gv29-8]
Length = 247
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 16/141 (11%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
++L+ L ++DGS F+ G + A++ GPVEA+ + +A V+V RP +G+ +R
Sbjct: 6 AELSHLPKADGSANFAFGGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTAER 65
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS---------------LLSCCINAA 113
E++++ + PR + +T+Q ++ + ++ ++AA
Sbjct: 66 QLEAILQPALRHLIPVRNFPRCVIQVTLQVMEAPENAYVNAKVLQPRLNLGIIPALLHAA 125
Query: 114 CLALINSGISMRYILAAVSCI 134
L L+ + I ++ + A+ +C+
Sbjct: 126 ILGLLTATIPLKTV-ASATCL 145
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR------ 57
+R + + ++S++ GS G T VV S+YGP E +K K + FR
Sbjct: 43 VRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARRKDFTFKGQINCEFRFAQYSC 102
Query: 58 P------KSGLSFVQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQGSLLSCC 109
P G + +L E + A + LH P+++V + + +++ G L+C
Sbjct: 103 PIRRQHLNDGEALHYSQLLEKAL------APVVCLHKFPKSTVDVFVLVIENDGGALACA 156
Query: 110 INAACLALINSGISMRYILAAVS 132
I A LAL ++GI M ++ S
Sbjct: 157 ITTAGLALADAGIDMYDVVVGCS 179
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA---------SVEVIFRPKSGLSFVQDRL 69
GS G T V+ S++GP E+K + D S R K G + ++R
Sbjct: 51 GSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERD 110
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILA 129
S++ + A+ P+T+V + LQ G L + A LAL ++GI + ++A
Sbjct: 111 LSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVA 170
Query: 130 AVSCIINDKNEVILDANQIQSN 151
AVS + + + +V+LD + + N
Sbjct: 171 AVS-VSSIQGQVLLDPSTSEEN 191
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D R + + L +DGS G ++ ++GP + + + D + V +
Sbjct: 23 VDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHME 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V +R + VIK E A++ PRT+V + I+ LQ G
Sbjct: 83 PFS----VGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRC 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+ AA +AL ++GI MR ++AA++ + VILD N
Sbjct: 139 AALTAASVALADAGIPMRDMVAAIAA-GKVADTVILDVN 176
>gi|358336410|dbj|GAA28689.2| ribonuclease pH related [Clonorchis sinensis]
Length = 235
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +L +LN + GS ++ V S+YGP E K Q + +A V+++ P G
Sbjct: 4 DKPVDLYVELNSDCNAIGSTVWDYSGHHVTFSVYGPDEVKSQDELTHRARVDILVLPSVG 63
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSV-----ILTIQELQDQGSLLSCCINAACLA 116
+++ E+ + S E + PRT + IL+ Q ++ +NA L+
Sbjct: 64 QHTLKETELEAFLTSVVERLVDVKAFPRTKISGRLCILSGDASHPQ--TVAAALNAISLS 121
Query: 117 LINSGISMRYILAAV 131
L+ SG+ +R ++AV
Sbjct: 122 LLQSGLPLRATISAV 136
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR------ 57
+R + + ++S++ GS G T VV S+YGP E +K K + FR
Sbjct: 44 IRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINCEFRFAQYSC 103
Query: 58 --------PKSGLSFVQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQGSLLS 107
L F Q L+E++ C LH P+++V + + L++ G L+
Sbjct: 104 QIRRQHLNDSEALHFSQ-LLEEALAPVVC-------LHKFPKSTVDVFVYVLENDGGALA 155
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
I A LAL ++GI M ++ S + D + +LD
Sbjct: 156 SAITTAGLALADAGIDMYDVVIGCS-LRQDGSTCLLD 191
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKAS------- 51
+ LR L +Q++ +DGS G T V+ + GP E A QK
Sbjct: 20 WNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTGGGGQAGGQKD 79
Query: 52 -----VEVIFRPKSGLSFVQDRLKESVIKS---TCESALLTMLH----PRTSVILTIQEL 99
V V+ S + + + I+ T + AL LH P +++ +++ L
Sbjct: 80 GASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHVHLFPHSTITVSLHVL 139
Query: 100 QDQGSLLSCCINAACLALINSGISMR-YILA 129
GSLL+ INA LALI++GI M YI A
Sbjct: 140 SQDGSLLAALINATTLALIDAGIPMTDYITA 170
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR----- 57
+R + + ++S++ GS G T VV S+YGP E +K K + FR
Sbjct: 43 DIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINCEFRFAQYS 102
Query: 58 ---------PKSGLSFVQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQGSLL 106
L F Q L+E++ C LH P+++V + + L++ G L
Sbjct: 103 CQIRRQHLNDSEALHFSQ-LLEEALAPVVC-------LHKFPKSTVDVFVYVLENDGGAL 154
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
+ I A LAL ++GI M ++ S + D + +LD
Sbjct: 155 ASAITTAGLALADAGIDMYDVVIGCS-LRQDGSTCLLD 191
>gi|340924044|gb|EGS18947.1| hypothetical protein CTHT_0055610 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 284
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGTGAGTTGGGGAGGAG 79
Query: 49 --------KASVEVIFRPKSGLSFVQDRLK-----------ESVIKSTCESALLTMLHPR 89
K + V+ +G S V DR + +S + + ++L T L P
Sbjct: 80 GGGSGGQGKEAEVVVSIVIAGFSSV-DRKRHGRNDKRIIEMQSTVANALSASLHTHLFPH 138
Query: 90 TSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAV-----SCIINDKN-EVI 142
+ + +++ L GSLL+ INAA LA +++GI M Y++A + ND+N + +
Sbjct: 139 SQITISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVVACTAGSTSTYAANDENADPL 198
Query: 143 LDANQ 147
LD N
Sbjct: 199 LDLNH 203
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID----KASVEVIFRP- 58
+R + + ++S++ GS G T ++ +YGP E +K D + + ++ F P
Sbjct: 45 VRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETD-RKDETDMKCGRLTTDMRFAPF 103
Query: 59 -----KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
S + QD+ ++ + + A+ +PR+ + +++ L++ GS+L+ + A
Sbjct: 104 SCPERGSWIQGSQDKDFSLMLHESLQPAICLHKYPRSQIEVSVMVLENSGSVLAHAVTCA 163
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
LAL ++GI M Y L + D ++D + ++ N
Sbjct: 164 SLALADAGIEM-YDLVLGCSMRQDGTSYVVDPSYMEEN 200
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D R + + L +DGS G ++ ++GP + + + D + V +
Sbjct: 23 VDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHME 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V +R + VIK E A++ PRT+V + I+ LQ G
Sbjct: 83 PFS----VGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQADGGTRC 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+ AA +AL ++GI MR ++AA++ + VILD N
Sbjct: 139 AALTAASVALADAGIPMRDMVAAIAA-GKVADTVILDVN 176
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D R + + L +DGS G ++ ++GP + + + D + V +
Sbjct: 23 VDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHME 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V +R + VIK E A++ PRT+V + I+ LQ G
Sbjct: 83 PFS----VGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQADGGTRC 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+ AA +AL ++GI MR ++AA++ + VILD N
Sbjct: 139 AALTAASVALADAGIPMRDMVAAIAA-GKVADTVILDVN 176
>gi|340057336|emb|CCC51681.1| putative RRP41p homologue [Trypanosoma vivax Y486]
Length = 252
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS- 63
R L + G + G + V A++YGP E + +D EV+ + ++
Sbjct: 24 RRLTMEFGKSPDCGGRCTVTAGLSHVCATVYGPCEVTNR---LDTKHSEVVITCEVVVAA 80
Query: 64 FVQDRLKESVIKS------------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F +R +E +S S + +P + + + I+ L+ G+ + CIN
Sbjct: 81 FAGERRREPQRRSKLSEEISTAVLEVARSTVFLSYYPNSQIHICIEVLRQDGNDKAACIN 140
Query: 112 AACLALINSGISMRYILAA 130
AACLAL+++ ++MR I+ A
Sbjct: 141 AACLALVDANVAMRDIIYA 159
>gi|225677984|gb|EEH16268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 256
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 25/130 (19%)
Query: 26 GQTVVVASMYGPVEAK------------IQKTIIDKASVEVIFRPKSGLSFVQ------- 66
G T+V+ ++GP E + I ++ A + R K L+
Sbjct: 2 GNTIVICMVHGPAEGRRSEATGPAREGAIISVAVNIAGFSGVDRKKKSLAAGAGGGGGGG 61
Query: 67 --DRLKES----VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
DR + ++ + L T L+P +++ L I L GSL + CINA LAL+++
Sbjct: 62 GGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLNISVLSSDGSLFAACINACTLALVDA 121
Query: 121 GISMRYILAA 130
GI M +L A
Sbjct: 122 GIPMPGLLCA 131
>gi|340522690|gb|EGR52923.1| predicted protein [Trichoderma reesei QM6a]
Length = 287
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTII----------- 47
+ LR L +Q++ +DGS G T V+ + GP E A QK
Sbjct: 20 WNDLRRLHAQIHTQEAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTTGGGGGGGGAA 79
Query: 48 -----------DKASVEVIFRPKSGLSFVQDRLK----------ESVIKSTCESALLTML 86
D AS+ V+ +G S V + + E I+ + L T L
Sbjct: 80 AAGGALGAGQKDAASI-VVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHL 138
Query: 87 HPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILA 129
P +++ +++ L GSLL+ INA LALI++GI M YI A
Sbjct: 139 FPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITA 182
>gi|403158112|ref|XP_003307453.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163684|gb|EFP74447.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 292
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILA 129
I++T E ++ L+PR+++ + +Q LQ G+LL IN LALI +G+S+ Y+L+
Sbjct: 125 IQNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVLS 181
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D R + + L +DGS G ++ ++GP + + + D + V +
Sbjct: 23 VDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHME 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V +R + VIK E A++ PRT+V + I+ LQ G
Sbjct: 83 PFS----VGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRC 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+ AA +AL ++GI MR ++AA++ + VILD N
Sbjct: 139 AALTAASVALADAGIPMRDMVAAIAA-GKVADTVILDVN 176
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIF------ 56
LR + ++ ++ + GS G V+A++YGP+EA +K + D+A ++V +
Sbjct: 25 LRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLDVRYNMAPFS 84
Query: 57 ---RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
R + G + + R V ES +L ++PR+ + + I+ L + + AA
Sbjct: 85 TTDRIRPGFNR-RSREISKVTSDALESVVLLEMYPRSKIRVEIEILCAEAGTRCVGLTAA 143
Query: 114 CLALINSGISMRYILAAV-SCIINDKNEVILDANQIQSN 151
+AL ++GI M ++ +V S IN VI D N+ + N
Sbjct: 144 SVALAHAGIPMTDMVVSVASGKIN--GVVICDLNKEEDN 180
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA---KIQKTIIDKASVEVIF- 56
+D +R + + +L +DGS + + G V VA++YGP+EA KIQ+ D+A ++V +
Sbjct: 22 IDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKIQRQ--DRAVIDVRYN 79
Query: 57 --------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
R + G + + R V ES +L +PR+ + + I+ L +
Sbjct: 80 MAPFSTSDRIRPGYNR-RSREISKVTAEALESVVLVERYPRSKIRVEIEILAAEAGTRCA 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ AA +AL ++GI MR ++ V+ + V+LD ++ + N
Sbjct: 139 GLTAAAVALADAGIPMRDLIVGVAS-GKVEGTVVLDLDKAEDN 180
>gi|407854103|gb|EKG06647.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi]
Length = 285
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Query: 5 RELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
RE++ + + L++ DGS +SQG T VVA++ GPV A+ + K V+V
Sbjct: 14 REMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQED--YRKCGVQVYVNRAVR 71
Query: 58 -PKSG----LSFVQDRLKESVIKSTCESALLTMLH--------PRTSVILTIQELQDQGS 104
P++G L + R+++ + + E L + PR + + + L D G+
Sbjct: 72 IPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGA 131
Query: 105 LLSCCINAACLALINSGISMR 125
LLS NA AL+++G+ R
Sbjct: 132 LLSVATNALMCALLDAGVPCR 152
>gi|358059015|dbj|GAA95196.1| hypothetical protein E5Q_01851 [Mixia osmundae IAM 14324]
Length = 290
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLSFVQDRLKE 71
DGS QG T V S+ GP E + + + +VE+ SG+ + +
Sbjct: 38 DGSASVEQGLTRVSVSVCGPREPRAARGAGNARQDRVVINVEIQTATFSGVDRRKRGRND 97
Query: 72 -------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
S IK+T E ++ L+PR + + + LQ G LS INA LAL ++GI+M
Sbjct: 98 RRTVEMASSIKNTFEPVIMGQLYPRAQIDIYVIILQQDGGTLSAAINATSLALSHAGIAM 157
Query: 125 RYILAAVS 132
+A++S
Sbjct: 158 ISPIASIS 165
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR------PKSGLSFVQDRL- 69
SD SV + QGQT ++ S+ GP+ + + + FR P DR
Sbjct: 41 SDSSVYYEQGQTKLITSICGPIPL-LNSSSQSGIQLHCNFRMSPFCTPDRRKRGKNDRFC 99
Query: 70 --KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
+I T ESA+ + ++ ++ +I+ I L+ G + S INA LAL N+GI M+
Sbjct: 100 TENSLIITRTFESAI-SEIYVKSQIIININVLEADGGVRSAAINATSLALANAGIGMK 156
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID----KASVEVIFRP- 58
+R + + ++S++ GS G T ++ S+YGP E + +K D + + ++ F P
Sbjct: 45 VRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETE-RKDETDMKCGRLTTDMRFAPF 103
Query: 59 -----KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
S + QD+ +++ + + AL +PR+ + + + L++ GS+ + I A
Sbjct: 104 SCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCA 163
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDAN 146
LAL ++GI M Y L I D + ++D
Sbjct: 164 SLALADAGIEM-YDLVLGCSIRQDGSSYVVDPT 195
>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
Length = 182
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
++ST E + T L+PR+ V + + Q G +L INA LAL+++GI M + A++C
Sbjct: 37 VRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMDAGIPMSDYVTAMTC 96
Query: 134 IINDKNEVILDAN 146
++ + +LD N
Sbjct: 97 GLH-GSTAMLDLN 108
>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
Length = 351
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS---VEVIFR--PKSGLSFVQDRLKES 72
DG+V F QGQ ++ S+ GPV + S + FR P S QDR K
Sbjct: 125 DGNVYFEQGQNKLIVSIVGPVPISGNINYTNNNSGVQINCNFRVSPFSS----QDRRKRG 180
Query: 73 VIKSTCESALLTMLHPRTSVI----------LTIQELQDQGSLLSCCINAACLALINSGI 122
C + L + +SVI + I L+ GS+ S INA +AL SGI
Sbjct: 181 KNDRFCIESGLIISRTFSSVICDQYSKSQIIINIIILEGDGSVRSAAINATSIALAISGI 240
Query: 123 SMRYILAAVSCIINDKNEVILDANQ 147
SM+ ++ + +C + K +V+ D Q
Sbjct: 241 SMKDLIVSATCGLYGK-QVLYDLTQ 264
>gi|412985413|emb|CCO18859.1| exosome complex exonuclease RRP41 [Bathycoccus prasinos]
Length = 288
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK-----SGLSFVQDRLKESV 73
GS F+ GQT VA+++GP + + + ID S+E R K + +F D + +
Sbjct: 37 GSAEFTFGQTTAVAAVFGP-HSSLSTSTIDSLSIE---RLKVTVEITSAAFGMDAIPKK- 91
Query: 74 IKSTCESALLTML-------------------------HPRTSVILTIQELQDQGSLLSC 108
++T + L+ +PR+ V ++ + D GS +
Sbjct: 92 -RATNAATLMKSSKSSRKNKELAVKFEQILRCCIDAKRYPRSEVYVSAATINDDGSASAA 150
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
N LAL+++GI M + AV C E +LD N+++
Sbjct: 151 LFNGIVLALVDAGIPMLDVFVAV-CATRLDGETLLDQNEVE 190
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA---------SVEVIFRPKSGLSFVQDRL 69
GS G T V+ S++GP E+K + D S R K G + ++R
Sbjct: 51 GSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERD 110
Query: 70 KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILA 129
S++ + A+ P+T+V + LQ G L + A LAL ++GI + ++A
Sbjct: 111 LSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVA 170
Query: 130 AVSCIINDKNEVILDANQIQSN 151
AVS + + +V+LD + + N
Sbjct: 171 AVS-ASSIQGQVLLDPSTSEEN 191
>gi|343473099|emb|CCD14915.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 255
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQK----TIIDKASVEVIFRPKSG---LSFVQ 66
LS+ DGSV +SQG T V ++ GP A+ + T+ + S P G L+ ++
Sbjct: 25 LSQFDGSVWYSQGLTAVCVAINGPTAARQENYRRCTLNVRVSRMSRIPPAGGTDRLAVME 84
Query: 67 DRLK--------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
R + E + E+ + PR + + + L D G+LL+ NA AL+
Sbjct: 85 KRERQQRADGEMEQFLAGLAEAVVQLDRFPRCVLEVNVMVLMDDGALLAVAANAMMCALL 144
Query: 119 NSGISMRYILAAVSCII 135
++G+ +AAVS ++
Sbjct: 145 DAGVPCHSTVAAVSLLL 161
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R++ +L SD S +S G T ++A +YGP + + DK V F
Sbjct: 39 NEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGP-KPDSKNATYDKGKV---FLEIKS 94
Query: 62 LSFVQDRLKE-------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
L+ DR + +++ S +L +P+ S+ + +Q+ G LS +
Sbjct: 95 LNMNDDRANDESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQNDGGCLSATLTCIS 154
Query: 115 LALINSGISMRYILAAVS 132
LALIN+ I MR I+ +V+
Sbjct: 155 LALINAQIKMRDIIVSVN 172
>gi|156061393|ref|XP_001596619.1| hypothetical protein SS1G_02840 [Sclerotinia sclerotiorum 1980]
gi|154700243|gb|EDN99981.1| hypothetical protein SS1G_02840 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 64
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
E + L+ L R+DGS FSQ V+ ++ GP+E + + + ++A+++VI RP +G+
Sbjct: 6 EPTALLSPLHRADGSASFSQNGYTVIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVG 63
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRP 58
MD R L ++ ++S++ GS +T V S++ P E + + + + + EV + P
Sbjct: 48 MDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYCEVKYAP 107
Query: 59 -------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
K+ + +R +K E A+ L P + + I L++ G+ L IN
Sbjct: 108 FSCRGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGACLPAAIN 167
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILD 144
AA LAL ++ + M I+ A S I+ ++V +D
Sbjct: 168 AAGLALSDAAVPMYDIITASSLAIS-GDKVFVD 199
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIFRP 58
MD R L ++ ++S++ GS +T V S++ P E + + + + + EV + P
Sbjct: 48 MDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYCEVKYAP 107
Query: 59 -------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
K+ + +R +K E A+ L P + + I L++ G+ L IN
Sbjct: 108 FSCRGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGACLPAAIN 167
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDA 145
AA LAL ++ + M I+ A S I+ ++V +D
Sbjct: 168 AAGLALSDAAVPMYDIITASSLAISG-DKVFVDP 200
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 5 RELKS---QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPKS 60
REL+S +L+ +DGS S G T V ++GP EAK + +T+ DKA + V
Sbjct: 20 RELRSITIELSPHPTADGSATVSHGLTTVNVCVFGPREAKNRSQTMHDKALINVEISEAP 79
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
G LK S + P LQ G +L INAA LALI++
Sbjct: 80 GGVGTNVSLKADPRICCFYSRNIRARRP---------VLQQDGGVLQTAINAATLALIDA 130
Query: 121 GISMR-YILAAVSCIIN 136
GI++ Y+ A + I+
Sbjct: 131 GIALTDYVCACTAACID 147
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI--FRP- 58
+ LR + ++S + GS QG T VVA+++GP E +K KA + + F P
Sbjct: 41 EELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREVTRRKEFSLKAQLRCVFTFEPF 100
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ +S ++ R S ++ + + + +P+ S+ + + L++ G +L+ + A
Sbjct: 101 ATPGGRQENISLLEQRYS-SWLEESLKPVVQLRRYPKASIDIRVTCLENDGGVLAAALTA 159
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+AL SGI ++ V+ + + V++D + + +
Sbjct: 160 CGIALATSGIETFDLVIGVN-LRAHGDRVLMDPSHAEED 197
>gi|367019368|ref|XP_003658969.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
gi|347006236|gb|AEO53724.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
Length = 279
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 26/155 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------------ 48
+ LR + +Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGGAGGGGAGAG 79
Query: 49 ----KASVEV---------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILT 95
KA V V + R + G + + S + + ++L T L P + + ++
Sbjct: 80 GTGGKAEVVVGIVIAGFSSVDRKRHGRNDKRTLELASTVANALAASLHTHLFPHSQINIS 139
Query: 96 IQELQDQGSLLSCCINAACLALINSGISMR-YILA 129
+ L GSLL+ INAA LA +++GI M Y+ A
Sbjct: 140 LHVLSQDGSLLAALINAATLACVDAGIPMTDYVTA 174
>gi|429328435|gb|AFZ80195.1| exosome complex exonuclease RRP41, putative [Babesia equi]
Length = 254
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAK-----IQKTIIDKAS--VEVIFRPKSG-LSFV 65
+S DG+ G V + GP E Q+ + D VEV+F G S
Sbjct: 37 ISGYDGASQIKHGLNKVQVLVKGPSEGGKALRGAQRALDDSVDIRVEVMFSTDKGPKSSK 96
Query: 66 QDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
DR+ + IK T A++ ++ R ++ + + ++ G + S +NA +ALI++GI
Sbjct: 97 NDRMVTDIVNAIKGTFGEAIIQDMYKRLAIRIFVNIIEADGGIKSTVLNAVGVALIDAGI 156
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
++R + ++ S ++ + N + D N ++ N
Sbjct: 157 ALRDLTSSCSVVLLE-NRIFTDGNHLEIN 184
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +Q+ + +DGS G T V+ + GP EA + + V +
Sbjct: 20 WNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQR---RTGVNITATATG 76
Query: 61 GLSFVQDRLKESVI-------------------------KSTCESALLTMLHP----RTS 91
G Q R E V+ ++T AL LH ++
Sbjct: 77 GGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQHST 136
Query: 92 VILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS------CIINDKNEVILD 144
+ ++ L GSLL+ INAA LA +++GI M Y++A + ++ + +LD
Sbjct: 137 ITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESADPLLD 196
Query: 145 ANQ 147
NQ
Sbjct: 197 LNQ 199
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--------------------- 39
+ LR + +Q+ + +DGS G T V+ + GP E
Sbjct: 20 WNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGGGGGGGGA 79
Query: 40 ---AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI 96
A+I I+ A + R + G + S + + ++L T L P + + +++
Sbjct: 80 GGKAEIVVGIV-IAGFSSVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHSQINVSL 138
Query: 97 QELQDQGSLLSCCINAACLALINSGISMRYILAA 130
L GSLL+ INAA LA +++GI M +AA
Sbjct: 139 HVLSQDGSLLAALINAATLACVDAGIPMTDYVAA 172
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K D S P GL ++ S
Sbjct: 59 GSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARGLG-SDNKEFSS 117
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A VS
Sbjct: 118 MLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVS 177
Query: 133 CIINDKNEVI 142
+N +I
Sbjct: 178 VSCLGRNLII 187
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K D S P GL ++ S
Sbjct: 59 GSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARGLG-SDNKEFSS 117
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A VS
Sbjct: 118 MLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVS 177
Query: 133 CIINDKNEVI 142
+N +I
Sbjct: 178 VSCLGRNLII 187
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFR--- 57
D R + + ++S++ GS QT V+ +YGP + KT+ +K + F+
Sbjct: 46 DEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGP--RQTPKTVYSEKGKLNCFFKLAT 103
Query: 58 -PKSG--LSFVQDRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
++G +V D+ ++ + + E +L P++ + + + L++ G ++ I
Sbjct: 104 FAENGERRKYVSDKEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAIT 163
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
AA LAL ++GI M ++A+ S + D + ++LD +
Sbjct: 164 AASLALADAGIEMYDLVASCSVGVVDSH-ILLDPS 197
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K D S P GL ++ S
Sbjct: 59 GSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARGLG-SDNKEFSS 117
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A VS
Sbjct: 118 MLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVS 177
Query: 133 CIINDKNEVI 142
+N +I
Sbjct: 178 VSCLGRNLII 187
>gi|25152573|ref|NP_497279.2| Protein EXOS-4.2 [Caenorhabditis elegans]
gi|351064253|emb|CCD72537.1| Protein EXOS-4.2 [Caenorhabditis elegans]
Length = 241
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP-VEAKIQKTIIDKASVEVIFRPKSG 61
+ R L + + DGS G T V+A + GP + K ++ D+A + +
Sbjct: 36 AFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEE---DRAKITIE------ 86
Query: 62 LSFVQDRLKESVIKSTCESALLTML----HPRTSVILTIQELQDQGSLLSCCINAACLAL 117
L ++D +K + ++ SA+ ++ +P + + I L D G +LS ++A LA+
Sbjct: 87 LKGIEDSVKVAEYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGVLSTALSAVTLAI 146
Query: 118 INSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+SGI ++A+V +N E + D + +S
Sbjct: 147 SHSGIENMGLMASVHVAMNSDGECLTDPSTSES 179
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 12/157 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ +R ++ +L I DGS ++ QG T V+ + GP AK Q ++ +E P S
Sbjct: 11 LQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGP-RAKTQSELL---LIEYSVSPFS 66
Query: 61 GLS------FVQDR-LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ F +D + +K + E+ ++ + ++ + +++ +Q+ GS S NA
Sbjct: 67 NIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGSSKSAVFNAI 126
Query: 114 CLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
LAL+++G+SM+ L +V+ + D+ +I+D Q +S
Sbjct: 127 TLALLDAGVSMKDFLVSVTVGL-DQGNLIVDLTQEES 162
>gi|413945995|gb|AFW78644.1| hypothetical protein ZEAMMB73_813724 [Zea mays]
Length = 548
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 28/126 (22%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N+L R+ G ++QG V+++++YGP ++ +KAS+E +++P++G
Sbjct: 13 NQLRLFTCIGNLLHRAHGCTRWAQGGIVMLSAVYGPKPGTVRGRTPEKASIEAVWKPRTG 72
Query: 62 L---------SFV-------------------QDRLKESVIKSTCESALLTMLHPRTSVI 93
SF Q+R E +K +S L +H T+
Sbjct: 73 QIDTPLFPSSSFCPTAVRVIGSLKWRVVFAGRQEREYEMTLKRMLQSICLLTVHANTTTS 132
Query: 94 LTIQEL 99
+ +Q L
Sbjct: 133 VVLQNL 138
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP---VEAKIQKTIIDKASVEVIFRP 58
D +R QL +S + GS G+T V+ ++YGP A+ + + + +V + P
Sbjct: 35 DEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAP 94
Query: 59 KSGLSFVQDRLK---ESVIKSTCESALLT--MLH--PR--TSVILTIQELQDQGSLLSCC 109
+ ++R + E + + E AL MLH P+ SV +TI L+D G +L+
Sbjct: 95 FADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTI--LEDDGGVLAAA 152
Query: 110 INAACLALINSGISMRYILAAVSC-IINDKNEVILDANQ 147
+N A LAL ++ + M ++ A S I+N V+LD ++
Sbjct: 153 LNCASLALADAAVEMYDVVTASSAGIVN--GSVVLDPSR 189
>gi|340052331|emb|CCC46607.1| putative exosome complex exonuclease 1 [Trypanosoma vivax Y486]
Length = 270
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---PKS 60
+R+ + +++ LS+ DGS +SQG T V ++ GPV AK + SV+V P +
Sbjct: 16 MRKKEMRISDLSQFDGSSWYSQGLTAVCVAVNGPVAAKQEDYRKCVVSVQVTHASRIPPA 75
Query: 61 G----LSFVQDRLKE--------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
G L +Q + ++ + S E+ + PR + + + L + GSLL+
Sbjct: 76 GGADRLCVIQKQEQQRREDGEIGQFLTSIVEAIVRLERFPRCVLQVHVTVLFNDGSLLAV 135
Query: 109 CINAACLALINSGISMRYILAAV 131
N AL+++G+ R +AAV
Sbjct: 136 ATNGLMCALLDAGVPCRTTVAAV 158
>gi|449016995|dbj|BAM80397.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 482
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK 41
D +R + +QL ++ +DGSV+ QGQT V+ ++YGP E K
Sbjct: 20 DEVRSISAQLGVVPGADGSVLVEQGQTRVLVAVYGPYETK 59
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP----------VEAKIQKTIIDKA 50
++ R++ ++ +L +DGS G ++A ++GP + I + A
Sbjct: 23 VNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMA 82
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V R S + + + V+K E A++ PRT++ + ++ LQ G +
Sbjct: 83 PFSVSERKNPAPSRREIEISK-VLKEALEPAVILEKFPRTAIDVYLEVLQADGGTRCAAL 141
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILDANQ 147
+AA +AL ++GI MR ++ SC + +ILD N
Sbjct: 142 DAASVALADAGIPMRDMV--CSCAAGKVADALILDVNN 177
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLS 63
Q +S + GS G T V+ S++GP E+K D S P G
Sbjct: 49 QTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNCNVSYTTFASPTLGQG 108
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ S++ E ++ P+T+V + L+ GS LS I+ A LAL ++GI
Sbjct: 109 -TDHKEYSSMLHKALEGVIIMETFPKTTVDVFALVLESGGSDLSVVISCASLALADAGIM 167
Query: 124 MRYILAA--VSCI 134
M ++ A VSCI
Sbjct: 168 MYDLITAVSVSCI 180
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 15 SRSDGSVIFSQGQTVVVASMYGPVEAK-------IQKTII-DKASVEVIFRPKSGLSFVQ 66
S++ GS G T +VAS+YGP + + +Q +I D R K +
Sbjct: 54 SQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFRRAPFSGRGKRRVPSSN 113
Query: 67 DRLKESVIKSTCESALLT----MLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+R +E + + AL+ + +PR + + + L+D G++L+ I AA LAL ++GI
Sbjct: 114 NR-EEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGAILASGIIAASLALADAGI 172
Query: 123 SMRYILAAVSCIINDKNEVIL 143
M +++A S +++ E +
Sbjct: 173 EMFDLVSACSLVLSGDAEPVW 193
>gi|390371124|dbj|GAB65005.1| hypothetical protein PCYB_042070 [Plasmodium cynomolgi strain B]
Length = 268
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP--- 58
+ +R++ +L SD S +S G T ++A +YGP + + DK V + +
Sbjct: 39 NEIRDMFIKLGADGYSDASCFYSLGNTKILALIYGP-KPDSKNATYDKGKVFLEIKSLNM 97
Query: 59 -KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLAL 117
G + D ++++ S +L +P+ S+ + +Q+ G LS + LAL
Sbjct: 98 NDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGGCLSATLTCISLAL 157
Query: 118 INSGISMRYILAAVS 132
IN+ I MR I+ +V+
Sbjct: 158 INAQIKMRDIIVSVN 172
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 22/151 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA--SVEVIF--- 56
+ R++ + ++S++ GS T V+ S++GP A + + + A S E+ F
Sbjct: 58 EQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGP-RASPKTELFESAKFSCELKFASF 116
Query: 57 -RPKSGLSFVQD--------RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
RP + +++ L++S+I A+ +P+T + + + L D G +L
Sbjct: 117 ARPGERIDYMESAKEKDLSINLRQSII-----GAIRLEKYPKTVIDVYVMVLNDDGGVLV 171
Query: 108 CCINAACLALINSGISMRYILAAVS--CIIN 136
I AA +AL ++G+ M +++A S CI N
Sbjct: 172 AAITAASMALADAGVEMYDMVSACSSICIRN 202
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 18/167 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-------IQKTIIDK---- 49
+ LR + Q++ + +DGS F G T V+ +++GP +A+ ++ ID
Sbjct: 20 WNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAAIDVEIGI 79
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
A + R + G + + + + I S S + T +P +++ + + L G+LL+ C
Sbjct: 80 AGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQDGALLAAC 139
Query: 110 INAACLALINSGISMRYILAAV------SCIINDKN-EVILDANQIQ 149
+NAA LAL+++G+ M+ +AAV S ND+ + +LD N ++
Sbjct: 140 LNAATLALVDAGVPMKDYVAAVTTGSTASYASNDEEADPLLDLNGVE 186
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRP------KSG 61
+L ++S + GS G T V+ S++ P E Q T + + ++ F P K+
Sbjct: 2 KLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKNP 61
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ ++R + + + + L P + + L+D GS+L I AA LAL ++
Sbjct: 62 QTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGLALSDAT 121
Query: 122 ISMRYILAAVSCII 135
ISM I+ A + +
Sbjct: 122 ISMFDIVTATTVAV 135
>gi|413949053|gb|AFW81702.1| hypothetical protein ZEAMMB73_884899 [Zea mays]
Length = 405
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
Q+R E +K T +S L +HP T+ + +Q LL C INA+C AL +GI M+
Sbjct: 111 QEREYEMTLKRTLQSICLLTVHPNTTTSVVLQ-------LLPCAINASCAALAFAGIPMK 163
Query: 126 YILAA 130
+++ +
Sbjct: 164 HLIGS 168
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
++LR +K ++ +L+ +DGS G ++ +YGP E +K +V R K
Sbjct: 14 NTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAV---LRCKYN 70
Query: 62 LSF--VQDRLKESVIKSTCE-SALLTML---------HPRTSVILTIQELQDQGSLLSCC 109
++ V++R + + + E S L++ +PR S+ ++I+ L+ +G
Sbjct: 71 MAPFSVKERKRPGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEAEGGTRCLG 130
Query: 110 INAACLALINSGISMRYILAAVSCIIND-KNEVILD 144
I A LAL ++ I M+ +++A C + + ++LD
Sbjct: 131 IVGASLALADAEIPMKDLISA--CAVGKVDDHIVLD 164
>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
gi|156868826|gb|EDO62198.1| polyribonucleotide nucleotidyltransferase [Clostridium leptum DSM
753]
Length = 733
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT-VVVASMYGPVEAKIQKTIIDKASVEVIFRPK 59
MD +R L +++ +L R GS +F++GQT V+ A+ GPV + ++D E R
Sbjct: 321 MDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVS---DQQLLDGIDGEEFKRYM 377
Query: 60 SGLSFVQDRLKESVIK-----------STCESALLTMLHPRT----SVILTIQELQDQGS 104
+F + E+ + E ALL ++ P + L + + GS
Sbjct: 378 HQYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVIPPVEEFPYAYRLVSEVVSSNGS 437
Query: 105 LLSCCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 438 TSQASICGSTLALMDAGVPIKAPVAGISC 466
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
Length = 539
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPV-EAKIQKTIIDKASVEVIFRPKSG 61
+ R L + + DGS G T V+A + GP + K ++ D A V V +
Sbjct: 35 AFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGPDGDGKWEE---DHAKVVVTLKGVEN 91
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ V + E + S+ + + +P + + I L D G +LS I A LAL +SG
Sbjct: 92 ETSVAEWRAE--LTSSASAVIFVNKYPGKVIEIEITVLSDDGGVLSTAITAMALALAHSG 149
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQSN 151
I + A+V + + I D + +S+
Sbjct: 150 IEHMGLTASVHVAMRPNGDYITDPSTSESS 179
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFR----PKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K + + I + + V F P G + S
Sbjct: 56 GSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQG-SDHKEYSS 114
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A+VS
Sbjct: 115 MLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVS 174
Query: 133 CIINDKNEVI 142
+KN VI
Sbjct: 175 VSCFNKNLVI 184
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR +Q+ + +DGS G T V+ + GP EA + + V +
Sbjct: 20 WNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQR---RTGVNITATATG 76
Query: 61 GLSFVQDRLKESVI-------------------------KSTCESALLTMLHPR----TS 91
G Q + E V+ ++T AL LH ++
Sbjct: 77 GGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQHST 136
Query: 92 VILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS------CIINDKNEVILD 144
+ ++ L GSLL+ INAA LA +++GI M Y++A + ++ + +LD
Sbjct: 137 ITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESADPLLD 196
Query: 145 ANQ 147
NQ
Sbjct: 197 LNQ 199
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+ LR LK + IL+ ++GS G V+A++YGP EA + +KA ++ +
Sbjct: 22 FNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIKCRYSMA 81
Query: 58 PKS-----GLSFVQDRLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
P S G S R E V K E+ ++ P + + + I+ LQ G + I
Sbjct: 82 PFSSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQSDGGTRAAGI 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA +AL N+GI ++ ++ AVS D++ V++D N I+ N
Sbjct: 142 TAAAVALANAGIHVKDMVYAVSAGRIDEH-VVIDVNMIEDN 181
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
++ R++ ++ +L +DGS G ++A ++GP + + + P +
Sbjct: 23 VNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKH----------MSNPDT 72
Query: 61 GLSFVQDRLKE-------------------SVIKSTCESALLTMLHPRTSVILTIQELQD 101
G+ V+ ++ V+K E A++ PRT++ + ++ LQ
Sbjct: 73 GILRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQA 132
Query: 102 QGSLLSCCINAACLALINSGISMRYILAAVSCIIND-KNEVILDAN 146
G ++AA +AL ++GI MR ++ SC + +ILD N
Sbjct: 133 DGGTRCAALDAASVALADAGIPMRDMV--CSCAAGKAADTLILDVN 176
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP---- 58
R+ +L ++S + GS G T V+ S++ P E Q + + + F P
Sbjct: 52 RKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACI 111
Query: 59 --KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLA 116
K+ + ++R + + + + L P + + L+D GS+L+ I AA LA
Sbjct: 112 HRKNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAVITAAGLA 171
Query: 117 LINSGISMRYILAAVS-CIINDK 138
L ++ ISM I+ A + +I DK
Sbjct: 172 LSDATISMFDIVTASTVAVIEDK 194
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP---- 58
R+ +L ++S + GS G T V+ S++ P E Q + + + F P
Sbjct: 52 RKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACI 111
Query: 59 --KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLA 116
K+ + ++R + + + + L P + + L+D GS+L+ I AA LA
Sbjct: 112 HRKNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAVITAAGLA 171
Query: 117 LINSGISMRYILAAVS-CIINDK 138
L ++ ISM I+ A + +I DK
Sbjct: 172 LSDATISMFDIVTASTVAVIEDK 194
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRP---- 58
R+ +++ ++S + GS G T V+ S++ P E Q + + ++ F P
Sbjct: 53 RKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFCDLKFSPFAPA 112
Query: 59 --KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLA 116
K+ + ++R + + S ++ L P + + L+D GS L+ I AA LA
Sbjct: 113 VRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLEDDGSALAVAITAAGLA 172
Query: 117 LINSGISMRYIL-AAVSCIINDKNEVILD 144
L ++ + M I+ AA + ++ D+ V++D
Sbjct: 173 LGDACVPMFDIVTAATAGVLGDR--VVMD 199
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 82/159 (51%), Gaps = 18/159 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
+ +R+ + ++ ++S++DGS G T+ +A++Y K ++++++V +R
Sbjct: 9 NEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVY-------LKPGREQSNLKVSYRMLPF 61
Query: 58 ---PKSGLSFVQDRLKES-VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ GL + ++ S +I E A++ P ++ +++ ++ INA
Sbjct: 62 AGEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAGTRVAAINAL 121
Query: 114 CLALINSGISMRYILAAVSC-IINDKNEVILDANQIQSN 151
LAL ++GI M+ ++ A++ + +K ++LD N+ + +
Sbjct: 122 SLALAHAGIPMKALVGAIAVGKVGEK--IVLDLNKQEED 158
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFRPKSGLSFVQD-RLKESV 73
+ GS G T V+ S++GP E+K + + I + + V F +F R + S
Sbjct: 55 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSF-----TTFATPIRGQGSD 109
Query: 74 IKSTC-------ESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
K C E A++ P+T+V + L+ GS L I+ A LAL ++GI M
Sbjct: 110 HKEYCAMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYD 169
Query: 127 ILAAVSCIINDKNEVI 142
I+A+VS +KN VI
Sbjct: 170 IVASVSVSCFNKNLVI 185
>gi|395326886|gb|EJF59290.1| hypothetical protein DICSQDRAFT_65281 [Dichomitus squalens LYAD-421
SS1]
Length = 283
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQ-TVVVASMYGPVEAKIQKTIIDKASVEVIFRPK 59
+D+LR++ L R DGS F G+ T +AS+ GP+E + A++++ RP
Sbjct: 12 LDALRDISVIYERLDRVDGSARFGFGKCTKSLASISGPIEVRPALENPSLATLDIQIRPL 71
Query: 60 SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
G+ + + +K+ +L HPRT + + Q L
Sbjct: 72 PGIPGTDSKALATTLKAIFTPSLFLSHHPRTLIQVVGQAL 111
>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 271
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP--- 58
+ +R++ +L SD S +S G T ++A +YGP + + DK V + R
Sbjct: 39 NEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGP-KPDSKNATYDKGKVFLEIRSLNM 97
Query: 59 -KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLAL 117
G + D ++++ S +L +P+ S+ + +Q+ G LS + LAL
Sbjct: 98 NDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGGCLSATLTCISLAL 157
Query: 118 INSGISMRYILAAVS 132
N+ I MR I+ +V+
Sbjct: 158 TNAQIKMRDIIVSVN 172
>gi|402467876|gb|EJW03104.1| hypothetical protein EDEG_02512 [Edhazardia aedis USNM 41457]
Length = 200
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 27/148 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S E+ ++NI +S GS F ++V+ ++YG + KI + ++EVI++ S
Sbjct: 1 MSSEVEISCKININEKSLGSSQFKLNESVIFCTIYGLYDCKIDS----QDNIEVIYKDNS 56
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLH---------PRTSVILTIQE-----LQDQGSLL 106
++KE+ T + + L+ +I D S
Sbjct: 57 A-----SKVKETYYAETLKEVITPFLYIDNNLHNENKYFKIIFVANSGYEMCYSDSKSFS 111
Query: 107 S----CCINAACLALINSGISMRYILAA 130
S CCINA LAL+ +GI ++ + A
Sbjct: 112 SNAFVCCINAGILALVQAGIPLKSLFYA 139
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
R++ ++ +L +DGS G ++A ++GP + + + P +G+
Sbjct: 27 RKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKH----------MSNPDTGILR 76
Query: 65 VQDRLKE-------------------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
V+ ++ V+K E A++ PRT++ + ++ LQ G
Sbjct: 77 VRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGGS 136
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIIND-KNEVILDAN 146
++AA +AL ++GI MR ++ SC + +ILD N
Sbjct: 137 RCAALDAASVALADAGIPMRDMV--CSCAAGKAADALILDVN 176
>gi|356504159|ref|XP_003520866.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Glycine max]
Length = 207
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
++++++++ +S++DGS IF G T V A++YGP E + + I S + R + L+
Sbjct: 19 MQQIRAEIGAVSKADGSSIFEMGNTEVTAAVYGPREVQNRSQQI---SSHALVRCEYSLA 75
Query: 64 FVQ--DRLKES-----------VIKSTCESALLTMLHPRTSVI 93
DR+++S VI T E+ +LT L P + V
Sbjct: 76 NFSTGDRMRKSKGDRRSTEISLVIXQTMEACILTHLLPHSPVF 118
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 12/154 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR--PK 59
D +R + ++ + +++GS G V+ ++YGP ++ ++ +++ F+ P
Sbjct: 38 DQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQCDFKFAPF 97
Query: 60 SG---LSFVQDRLKESVIKSTCESALLTML----HPRTSVILTIQELQDQGSL--LSCCI 110
SG + +D +E E AL + +P+ ++ + + L++ GS+ L+ I
Sbjct: 98 SGEKRKGYAKDD-QEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLENDGSMSALAAAI 156
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILD 144
+ A LAL N+GI M ++AA S ++ + LD
Sbjct: 157 SCASLALANAGIEMLDMVAASSIAYFGESMLCLD 190
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 54 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFATPVRGQG 113
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ S++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 114 -ADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 172
Query: 124 MRYILAAVSCIINDKNEVILD 144
M ++ +VS KN +I+D
Sbjct: 173 MYDLVTSVSVSCFGKN-IIID 192
>gi|225679989|gb|EEH18273.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 253
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 14 LSRSDGSVIF-SQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
LS DGS + S ++ S+ GP+E + ++A++EV+ +P +G+S V +R E
Sbjct: 11 LSFPDGSASYTSPNGDKILGSVNGPIEVGRRDAQKPEEATIEVLVKPGAGMSGVGERYVE 70
Query: 72 SVIKSTCESALLTMLH--PRTSVILTIQELQDQGS 104
+++S +L PR +++T+ L+++G+
Sbjct: 71 GILRSILSRVILVREKSMPRRGIVITLVVLENKGA 105
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 54 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPMRGQG 113
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ +++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 114 -TDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 172
Query: 124 MRYILAAVSCIINDKNEVILD 144
M ++ +VS KN +I+D
Sbjct: 173 MYDLVTSVSVSCFGKN-IIID 192
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 54 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQG 113
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ S++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 114 -ADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 172
Query: 124 MRYILAAVSCIINDKNEVILD 144
M ++ +VS KN +I+D
Sbjct: 173 MYDLVTSVSVSCFRKN-IIID 192
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID----KASVEVIFRP- 58
+R + + ++S++ GS G T ++ +YGP E + +K D + + ++ F P
Sbjct: 45 VRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETE-RKDETDMKCGRLTTDMRFAPF 103
Query: 59 -----KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
S + Q++ ++++ + + A+ +PR+ + + + L++ GS+L+ I A
Sbjct: 104 SCPERGSWIQGSQEKDFSTMLQESLQPAVCLHKYPRSQIEVNMMVLENSGSVLAHAITCA 163
Query: 114 CLALINSGISM 124
LAL ++GI M
Sbjct: 164 SLALADAGIEM 174
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 2 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQG 61
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ S++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 62 -ADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 120
Query: 124 MRYILAAVSCIINDKNEVILD 144
M ++ +VS KN +I+D
Sbjct: 121 MYDLVTSVSVSCFRKN-IIID 140
>gi|367053159|ref|XP_003656958.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
gi|347004223|gb|AEO70622.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
Length = 264
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII------------- 47
+ LR + +Q+ + +DGS G T V+ + GP E ++ I
Sbjct: 20 WNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGIGGGGAGGGGSGAG 79
Query: 48 ---DKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
K + V+ +G S V DR + + L T L P + + +++ L GS
Sbjct: 80 GGQSKEAEVVVSIVIAGFSSV-DRKRRGRGDN-----LHTHLFPHSQITVSLHVLSQDGS 133
Query: 105 LLSCCINAACLALINSGISMRYILAA 130
LL+ INAA LA +++GI M +AA
Sbjct: 134 LLAALINAATLACVDAGIPMTDYVAA 159
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP---------KSGLSFVQDR 68
DG +QG T V A + GP + KT K E P S + R
Sbjct: 41 DGVAQVTQGLTKVQAFINGPTDIGRSKT---KEGFETADSPVEIRCEVCIPSERKSMGHR 97
Query: 69 LKESVIK------STCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
++ ++ T E +++ L+ +++ + + L+ G + + INA +ALI++GI
Sbjct: 98 NNDATVEISRAVVGTFEPVIISHLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGI 157
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151
+M+ I+ A + ++ ++ +++D NQ++ N
Sbjct: 158 AMKDIIVACTAVMLNET-LLIDPNQLEIN 185
>gi|19074636|ref|NP_586142.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19069278|emb|CAD25746.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449330231|gb|AGE96492.1| rnase like protein [Encephalitozoon cuniculi]
Length = 188
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS-FV 65
+KS ++++S GS FS T V ++GP +A ++ D+A ++V +R ++ V
Sbjct: 4 IKSMVSVISHCTGSSRFSYNNTTVFCVVHGPSDAISRQEDPDRAILDVRWRDMVLINGRV 63
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
D+ VI+ ++ L + ++ + + + L C +NAA LAL + GI +R
Sbjct: 64 YDKYFSRVIEKILSKNIILELDACKVIQISFNVVGETRNTLFCAVNAALLALADGGIPLR 123
Query: 126 YILAAVSCIINDKNEVILDANQ 147
+ A S ++++ V+ D ++
Sbjct: 124 SMFYASSSFMHEEEVVVFDKDE 145
>gi|295667293|ref|XP_002794196.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286302|gb|EEH41868.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 253
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 14 LSRSDGSVIF-SQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE 71
LS DGS + S ++ S+ GP+E + ++A++EV+ +P +G+S V +R E
Sbjct: 11 LSFPDGSASYTSPNGDKILGSVNGPIEVGRRDAQKPEEATIEVLVKPGAGMSGVGERYVE 70
Query: 72 SVIKSTCESALLTMLH--PRTSVILTIQELQDQGS 104
+++S +L PR +++T+ L+++G+
Sbjct: 71 GILRSILSRVILVREKSMPRRGIVITLVVLENKGA 105
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLS 63
Q +S + GS G T V+ S++GP E+K D S P G
Sbjct: 49 QTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQG 108
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ S++ E ++ P+T+V + L+ GS LS I+ A LAL ++GI
Sbjct: 109 -TDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIM 167
Query: 124 MRYILAA--VSCI 134
M ++ A VSCI
Sbjct: 168 MYDLITAVSVSCI 180
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPK 59
++ R++ + +L +DGS G ++A ++GP + + + D + V + +
Sbjct: 23 VNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGILRVRYHME 82
Query: 60 SGLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F D K V+K E A++ PRT + + ++ LQ G
Sbjct: 83 P---FSVDERKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQADGGTRCA 139
Query: 109 CINAACLALINSGISMRYILAA 130
++AA +AL ++GI MR ++ A
Sbjct: 140 ALDAASVALADAGIPMRDMVCA 161
>gi|428164846|gb|EKX33858.1| hypothetical protein GUITHDRAFT_49759, partial [Guillardia theta
CCMP2712]
Length = 232
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI----- 55
+++LR ++++ R+ GS G+T VV +++GP + +
Sbjct: 11 LNTLRRKHMSVDVVDRASGSAYVESGRTKVVCTVHGPKTDTWSSLFSEHGRISCFVTISA 70
Query: 56 FRPKSGLSFVQDRLKESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
F G + R +E I +SA+ + +P++ + + + ++ G LLS CI
Sbjct: 71 FSGSDGERREERREEEERAAELGILPALQSAINLLKYPKSVIEVHVSVVEADGDLLSPCI 130
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
A LAL ++G+ M ++A+ S + K +L+
Sbjct: 131 VCASLALAHAGVEMYDLVASSSLALRRKEGFMLEPG 166
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFR--P-- 58
+R + ++ ++S++ GS G T ++ S+YGP E + +T + + FR P
Sbjct: 42 VRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFS 101
Query: 59 --KSGLSFVQ---DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
K G +++Q +R + + + + +PR+ + + + L++ GS+L+ + A
Sbjct: 102 CVKRG-AWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCA 160
Query: 114 CLALINSGISMRYIL 128
+AL ++GI M I+
Sbjct: 161 SMALADAGIEMYDIV 175
>gi|37675466|gb|AAQ97229.1| YGR095Cp [Saccharomyces cerevisiae]
Length = 67
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKE 71
+++ E
Sbjct: 63 EKVLE 67
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS---VEVIFRPKS 60
+R + + ++S++ GS G T ++ +YGP E + + K+ ++ F P S
Sbjct: 47 VRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGRLMTDMRFAPFS 106
Query: 61 GLSFVQDRLKESVIKSTCESALLTML------------HPRTSVILTIQELQDQGSLLSC 108
R + S I+ + E L ML +PR+ + + + L++ GS+L+
Sbjct: 107 C------RERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLENDGSVLAH 160
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ A +AL ++GI M Y L I + ++D ++ N
Sbjct: 161 AVTCASMALADAGIEM-YDLVLGCSIRQESATYLIDPTYLEEN 202
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID----KASVEVIFRP- 58
+R + + + S++ GS G T ++ +YGP E + +K D + + +V F P
Sbjct: 45 VRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETE-RKDETDMRCGRLTADVRFAPF 103
Query: 59 -----KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
S + QDR S++ + + A+ +PR+ + + + L++ GS+L+ + A
Sbjct: 104 SCPERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVLAHAVTCA 163
Query: 114 CLALINSGISM 124
+AL ++GI M
Sbjct: 164 SVALADAGIQM 174
>gi|322696851|gb|EFY88637.1| hypothetical protein MAC_05255 [Metarhizium acridum CQMa 102]
Length = 271
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 32/167 (19%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M + E +QL+ L +DGS FS VV A++ GP+EA + +A ++V+ RP +
Sbjct: 1 MTASSEPLAQLSNLPNADGSATFSYCGYVVTAAVNGPIEAPRRDENPFEALIDVVVRPAA 60
Query: 61 GLS-------------FVQDRLKESVIKSTCESALLTML----HPRTSVILTIQ------ 97
G+ + E ++S ++AL ++ PR + +T+Q
Sbjct: 61 GVGGKDRPFHLNLQSLIIWPGTAERQLESILQAALRQLIPIRNFPRCMIQVTLQIMEAPE 120
Query: 98 ---------ELQDQGSLLSCCINAACLALINSGISMRYILAAVSCII 135
+ Q +++ +AA L L+ + + ++ I A + I
Sbjct: 121 NAYQNTKLLQAQSNLAIIPALFHAAILGLLTAAVPLKTIATATTLAI 167
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 54 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQG 113
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
++ +++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 114 -TDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 172
Query: 124 MRYILAAVSCIINDKNEVILD 144
M ++ +VS KN +I+D
Sbjct: 173 MYDLVTSVSVSCFGKN-IIID 192
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 45/189 (23%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---------AKIQKTII---- 47
+ LR +Q+ + +DGS G T V+ + GP E + T
Sbjct: 20 WNELRRCHAQIRTQAAADGSSYLEMGNTKVMCVVTGPSEPTPGQRRTAGNVTATGAGGGG 79
Query: 48 -----------DKASVEVIFRPKSGLSFVQDRLKESV-------IKSTCESALLTMLH-- 87
D V IF +G S V DR + + +++T AL + LH
Sbjct: 80 GGGGGGAGQSKDAEVVVSIF--VAGFSSV-DRKRRARSDKRIQELQATLSRALASTLHTH 136
Query: 88 --PRTSVILTIQELQDQGSLLSCCINAACLALINSGISM-RYILAAVS------CIINDK 138
P +++ ++ L GSLL+ INAA LA +++GI M Y+ A + +D
Sbjct: 137 LFPHSTITFSLHVLAQDGSLLAALINAASLAAVDAGIPMIDYVAACTAGSTSSYAAGDDS 196
Query: 139 NEVILDANQ 147
+ +LD N
Sbjct: 197 ADPLLDLNH 205
>gi|449019724|dbj|BAM83126.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 294
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 30/41 (73%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI 42
++ R L+ L +L R+DGS + S G+T V+ S+YGP+++++
Sbjct: 12 EAFRPLRVALGVLERADGSSLLSLGETRVLVSVYGPLQSEL 52
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR ++ Q++ + +DGS F G T V+ +++GP ++ +A++EV +
Sbjct: 20 WNELRRIQGQMSTQAAADGSSYFEMGNTKVMCTVHGPRQSARSGGGTREATIEVEI-GVA 78
Query: 61 GLSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
G S + + + K T E + T +P +++ + + L G+LL+ C+
Sbjct: 79 GFSGTERKKRARADKRTQEMQHSISSAFSDTVFTAFYPSSTITIVLHVLSQDGALLAACL 138
Query: 111 NAACLALINSGISMRYILAA------VSCIINDKN-EVILDAN 146
NAA LAL+++G+ M +AA S ND++ + +LD N
Sbjct: 139 NAATLALVDAGVPMTDYIAACTTGSTASYASNDEDADPLLDLN 181
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE-----SV 73
GS G T V+ S++GP E+K DK + + + V + + ++
Sbjct: 65 GSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNCNVSYTTFATTVHGQGSDNKEFSTM 124
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
+ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A VS
Sbjct: 125 LHKALEGAVMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSV 184
Query: 134 IINDKNEVI 142
+N +I
Sbjct: 185 SCLGRNLII 193
>gi|78212256|ref|YP_381035.1| cyclic nucleotide-binding domain-containing protein [Synechococcus
sp. CC9605]
gi|78196715|gb|ABB34480.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Synechococcus
sp. CC9605]
Length = 127
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVE------V 54
+D++R L S+ ++ S G V+F G+T + MYG +E +Q T ID A E V
Sbjct: 4 LDTMRALASKAEVIHLSQGDVLFRTGET--GSFMYGLLEGSVQLTWIDSAGHEGHEDIPV 61
Query: 55 IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE 98
+G ++D + S +T + L+ M R + +QE
Sbjct: 62 GHVFGAGALVMEDHQRLSTATATSDCRLIAM--NRDKFLFAVQE 103
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS---------- 51
+ LR L ++ +DGS QG T VVA ++GP +Q + +A+
Sbjct: 21 NELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGP--RPLQAASVGRAAGTMARQGEAI 78
Query: 52 VEVIFRPKSGLSFVQDRLKESVIKST---------CESALLTMLHPRTSVILTIQELQDQ 102
V V++R S + + R ST + A+LT + P++ + + + LQ+
Sbjct: 79 VNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLTILQED 138
Query: 103 GSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
GS L+ C+NAA AL+++GI ++ + +A + + + + I+D N +S
Sbjct: 139 GSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAES 186
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK--TIIDKASVEVIF------RPKSGLSF 64
++S++ GS GQT V+A++YGP E ++ T+ + E+ F R + +
Sbjct: 1212 VVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQHIQD 1271
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
Q++ ++ E A+ P++ V + I LQD GS L+ I A L ++G+ M
Sbjct: 1272 NQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSALAAAITCAAAGLADAGVMM 1331
Query: 125 RYILAAVS 132
I+A S
Sbjct: 1332 YDIVAGCS 1339
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ +R + Q + L+ + GS S G+T + ++YGP ++ D+ S+ + FR
Sbjct: 53 FEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGP-RPNMKHASQDRGSINLEFRFAP 111
Query: 61 GLSFVQDRLKE-------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ +D E +++ + + L+ ++++ +++ L+D G L+S +
Sbjct: 112 FATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAALTCI 171
Query: 114 CLALINSGISM-RYILAAVSCIIN 136
LAL ++GI M + A +C+ +
Sbjct: 172 GLALADAGIEMLDVVTGASACVFS 195
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K D S P G + S
Sbjct: 57 GSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQG-SDHKEYSS 115
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A+VS
Sbjct: 116 MLHKALEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVS 175
Query: 133 CIINDKNEVI 142
KN VI
Sbjct: 176 VSCLGKNLVI 185
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ---KTIIDKASVEVIFRP- 58
S+R L ++ +L++ GS +G+T V+AS++GP E + + SVE P
Sbjct: 50 SVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGILSVEYCETPF 109
Query: 59 -------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
S +D+ + T S + L+P++ + + I L++ GS + I
Sbjct: 110 SSSSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLENDGSAIPTAIT 169
Query: 112 AACLALINSGISM 124
A LAL ++ I++
Sbjct: 170 AGALALSDASINL 182
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ +R + Q + L+ + GS S G+T + ++YGP ++ D+ S+ + FR
Sbjct: 53 FEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGP-RPNMKHASQDRGSINLEFRFAP 111
Query: 61 GLSFVQDRLKE-------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
+ +D E +++ + + L+ ++++ +++ L+D G L+S +
Sbjct: 112 FATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAALTCI 171
Query: 114 CLALINSGISM-RYILAAVSCIIN 136
LAL ++GI M + A +C+ +
Sbjct: 172 GLALADAGIEMLDVVTGASACVFS 195
>gi|443709878|gb|ELU04341.1| hypothetical protein CAPTEDRAFT_131639 [Capitella teleta]
Length = 200
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTC 78
G SQG+T VVA++ GP K + ++ + ++ R +GLS + ++S
Sbjct: 10 GLTTLSQGKTEVVAAIEGPSWGKRKPSV--RVFLDQFERRPAGLS----KASSLFLRSVF 63
Query: 79 ESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK 138
+ +P TS+ + I L+ GSLLS +NAA A++ IS I AVS + +
Sbjct: 64 GEIIHHHAYPNTSLSIHIHPLRSDGSLLSAAVNAAMAAVLGDSISCSGIHCAVSVCVGED 123
Query: 139 NEVILDANQ 147
V D ++
Sbjct: 124 GTVAADPDE 132
>gi|402592143|gb|EJW86072.1| 3' exoribonuclease [Wuchereria bancrofti]
Length = 262
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 17/158 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFR-- 57
++ R + Q +L G+V G T ++ S+ GP E + T +D + + V +
Sbjct: 32 NTFRPIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEIT-KSTDVDPTEGQIYVFLKNV 90
Query: 58 -------PKSGLSFVQDRLKESVIKSTCESALLTM----LHPRTSVILTIQELQDQGSLL 106
P S S + ++ + S I++ ESAL ++ L + + + I L D G +L
Sbjct: 91 SAESNSLPGSNSSSISNK-ENSRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVL 149
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
+ + A+ LALI+SGI + + A ++ +I+D
Sbjct: 150 AASLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVD 187
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI----FRPKSGLSFVQD 67
++S++ GS G T ++ +YGP E + +K D S +I F P S
Sbjct: 55 GLISQAKGSAYIEAGNTKLICCVYGPRETE-RKDETDMKSGRLITDMRFAPFSC------ 107
Query: 68 RLKESVIKSTCESALLTML------------HPRTSVILTIQELQDQGSLLSCCINAACL 115
R + S I+ + E L ML +PR+ + + + L++ G++L+ + A +
Sbjct: 108 RERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLENDGAVLAHAVTCASM 167
Query: 116 ALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AL ++GI M Y L I + ++D ++ N
Sbjct: 168 ALADAGIEM-YDLVLGCSIRQEGATYLIDPTFLEEN 202
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIFRPKSGLSFV--QDRL 69
+ +++GS T ++ ++YGP + + K ++ EV F P S V QD L
Sbjct: 8 IHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFAPFSWHERVSNQDSL 67
Query: 70 KE---SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+ S I ESA+ +P+ + + I L+ G+ LS AA +AL ++GI M
Sbjct: 68 SKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIALADAGIEM 125
>gi|303390958|ref|XP_003073709.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302857|gb|ADM12349.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
Length = 188
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
++S ++++ GS F+ T V ++GP ++ ++ + A ++V +R + +
Sbjct: 4 IRSMMSVIPHCTGSSRFTYNNTTVFCIVHGPSDSISRQEDPEMAILDVKWR---DIILIN 60
Query: 67 DRLKESVIKSTCESAL----LTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
R+ + E L + L P S+ ++ + + + L C +NAA LAL ++GI
Sbjct: 61 GRIYDKYFSREIEKILSKRIILELDPCRSIQISFNVVGEVRNTLFCAVNAALLALSDAGI 120
Query: 123 SMRYILAAVSCIINDKNEVILDANQ 147
+ + A S +++ ++ D ++
Sbjct: 121 PLISMFYASSSFTHEEEVIVFDGDE 145
>gi|363899684|ref|ZP_09326192.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB1]
gi|395208251|ref|ZP_10397492.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB8]
gi|361957982|gb|EHL11285.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB1]
gi|394705832|gb|EJF13356.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB8]
Length = 697
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV-----------VASMYGPVEAKIQKTIIDK 49
++ +R L+S++++L R GS +F +GQT + V + G E + +K + +
Sbjct: 318 INEIRPLESEVDVLPRVHGSAMFKRGQTQILNITTLAPLSEVQKVEGMNEFETEKRYLHQ 377
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSL 105
+ ++ S R +E + E AL+ +L P I + ++ GS
Sbjct: 378 YNFPGYSVGEAKASRGPGR-REIGHGALAEKALIPVLPPVEEFPYAIRSVSETMESNGST 436
Query: 106 LSCCINAACLALINSGISMRYILAAVSC--IINDKNEVILDANQIQS 150
A+C++L+ +G+ +R +A +SC + D ++ L IQ
Sbjct: 437 SMASTCASCMSLMAAGVPIRKPVAGISCGLVTGDSDDEYLVLTDIQG 483
>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
mellifera]
Length = 210
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS 132
+K E+ + L+PR+ + + ++ LQ GS +NAA LALI++GI ++ Y +
Sbjct: 50 LKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTV 109
Query: 133 CIIN-----DKNEV----ILDANQIQ 149
+IN D++ +LDAN ++
Sbjct: 110 TLINCPSLEDEDNTLEKGVLDANYVE 135
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGP--VEAKIQKTIIDKASVEVIFRP---KSGLSFVQ 66
I+S++ GS QG T +V +YGP V+ K ++ + E F P + Q
Sbjct: 4 GIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRGHQQ 63
Query: 67 DRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
D + +++ E+A+ P+ V + + +++ GS L+ + A LAL ++ I
Sbjct: 64 DNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASASIP 123
Query: 124 MRYILAAVS 132
M ++ S
Sbjct: 124 MYDLMIGTS 132
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA---SVEVIFRPK 59
S+R L ++ IL++S GS +G+T V+AS++GP E + A +VE P
Sbjct: 47 SVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGSLNVEYKEAPF 106
Query: 60 SGLSFVQDRLKES----VIKSTCESALLTMLHPRTSVILTIQELQDQGS 104
+ S + KE + T S + L+P++ + + I L+D GS
Sbjct: 107 ASRSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDDGS 155
>gi|84043476|ref|XP_951528.1| ribosomal RNA processing protein 41B [Trypanosoma brucei TREU927]
gi|14250914|emb|CAC39262.1| Rrp41p homologue [Trypanosoma brucei]
gi|33348349|gb|AAQ15675.1| ribosomal RNA processing protein 41B [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358716|gb|AAX79172.1| ribosomal RNA processing protein 41B [Trypanosoma brucei]
Length = 256
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 5 RELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-----TII--------- 47
RE++ + + LS+ DGS +SQG T V ++ GP A+ + T I
Sbjct: 13 REMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHVNRAARIP 72
Query: 48 -DKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ + +I + +D + + S E+ + PR + + L D G+L
Sbjct: 73 QEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVTVLMDDGALF 132
Query: 107 SCCINAACLALINSGISMRYILAAVSCII--------NDKNEVILDANQIQ 149
+ NA AL+++G+ R +AAVS I+ + E+ LD ++
Sbjct: 133 AVASNAIMCALLDAGVPCRSTIAAVSLIMCNPEASGNEGEPEIFLDPTAVE 183
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 24/170 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDK---ASVEVIFR 57
+ LR + Q++ + +DGS F G T ++ ++ GP + + + D+ AS+EV
Sbjct: 20 WNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQ-QTRGGGRDQSRSASIEVEI- 77
Query: 58 PKSGLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+G S + DR K S I S S +LT L+P++++ + + L G+LL
Sbjct: 78 GIAGFSGM-DRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLHVLSQDGALL 136
Query: 107 SCCINAACLALINSGISMRYILAA------VSCIINDKN-EVILDANQIQ 149
+ C+NAA LALI++GI M+ +AA S ND+ + +LD N ++
Sbjct: 137 AACLNAATLALIDAGIPMKDYVAACTTGSTASYASNDEEADPLLDLNGME 186
>gi|391233309|ref|ZP_10269515.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
gi|391222970|gb|EIQ01391.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
Length = 755
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTV-VVASMYGPV-EAKIQKTIIDKASVEVI----- 55
SLR + S++ +L R GS +F +G T +V + GP EA+ + A+ +
Sbjct: 324 SLRPIASEVGVLPRVHGSALFQRGDTQGLVTATLGPTKEAQDMDGLTGGATSKSFILHYN 383
Query: 56 FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQD----QGSLLSC 108
F P S F +E + E +L+ +L P TI+ + D GS
Sbjct: 384 FPPYSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYTIRLVSDIMASNGSTSMA 443
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNE 140
I CLAL+++G+ + +A +SC + N+
Sbjct: 444 SICGGCLALMDAGVPIIAPVAGISCGLMTSNK 475
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVE-----VIFRPKSGLSF 64
Q + + GS G+T V+ S++GP E+K D + F
Sbjct: 55 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQG 114
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
++++ ++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M
Sbjct: 115 LENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMM 174
Query: 125 RYILAAVSCIINDKNEVILD 144
++ +VS KN VI+D
Sbjct: 175 YDLVTSVSVSCLGKN-VIID 193
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 12 NILSRSDGSVIF--SQGQTVVVASMYGPVEAKIQ--------KTIIDKASVEVIFR-PKS 60
+LS++ GS G T V+ +++GP E + + + D R P S
Sbjct: 48 GLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWS 107
Query: 61 GLSFVQDRLKESVIK--STCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
G +++ ++ + E A+ +PR VI+ + L+D+GS L ++ A LAL
Sbjct: 108 GSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALA 167
Query: 119 NSGISMRYILAAVSCIINDKNEVILDAN 146
++GI M + E++LD +
Sbjct: 168 DAGIEMFDLALGCGLSRGPGGELLLDPD 195
>gi|341891925|gb|EGT47860.1| CBN-EXOS-4.2 protein [Caenorhabditis brenneri]
Length = 240
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP-VEAKIQKTIIDKASVEVIFRPKSG 61
+ R L + + DGS G T V+A + GP + K ++ D A + V +
Sbjct: 35 TFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIIGPDGDGKWEE---DHAKITVTLKGLEN 91
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
+ + E + S+ S + +P + + + L D G +LS ++A LAL +SG
Sbjct: 92 EKQIAEYRAE--LMSSASSVIFINKYPGKVIEIEVTVLSDDGGVLSAALSAVTLALAHSG 149
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
I + A+V + + I D + +S
Sbjct: 150 IEHMGLTASVHVGMRANEDYITDPSTSES 178
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVE-----VIFRPKSGLSF 64
Q + + GS G+T V+ S++GP E+K D + F
Sbjct: 55 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQG 114
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
++++ ++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M
Sbjct: 115 LENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMM 174
Query: 125 RYILAAVSCIINDKNEVILD 144
++ +VS KN VI+D
Sbjct: 175 YDLVTSVSVSCLGKN-VIID 193
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII------------- 47
+ LR + Q+ + +DGS G T V+ + GP E ++
Sbjct: 20 WNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASGGAGSGGQ 79
Query: 48 DKASVEVIFRPKSGLSFVQDRLKESVIKSTCE----------SALLTMLHPRTSVILTIQ 97
K + V+ +G S V + + K T E + L T L P + + +++
Sbjct: 80 SKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFPHSQINISLH 139
Query: 98 ELQDQGSLLSCCINAACLALINSGISMR-YILA 129
L GSLL+ INAA LA +++GI M Y+ A
Sbjct: 140 VLSQDGSLLAALINAATLACVDAGIPMTDYVTA 172
>gi|373853491|ref|ZP_09596290.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
gi|372473018|gb|EHP33029.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
Length = 751
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTV-VVASMYGPV-EAKIQKTIIDKASVEVI----- 55
SLR + S++ +L R GS +F +G T +V + GP EA+ + A+ +
Sbjct: 324 SLRPIASEVGVLPRVHGSALFQRGDTQGLVTATLGPTKEAQDMDGLTGGATSKSFILHYN 383
Query: 56 FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQD----QGSLLSC 108
F P S F +E + E +L+ +L P TI+ + D GS
Sbjct: 384 FPPYSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYTIRLVSDIMASNGSTSMA 443
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNE 140
I CLAL+++G+ + +A +SC + N+
Sbjct: 444 SICGGCLALMDAGVPIIAPVAGISCGLMTSNK 475
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLK 70
+ GS G T V+ S++GP E+K D S P G +++
Sbjct: 57 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQG-SENKDF 115
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAA 130
S++ + E A++ P+T+V + L+ GS L I+ A LAL ++GI + ++A+
Sbjct: 116 SSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS 175
Query: 131 VSCIINDKNEVI 142
VS KN +I
Sbjct: 176 VSVSCFGKNLLI 187
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ +R ++ ++ +DGS G +V ++Y IDKA V+ + +
Sbjct: 19 FNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKARYN-MA 77
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
G S V++R + +I ESA++ PR + + I+ L+ +
Sbjct: 78 GFS-VEERKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEADAGTRIASL 136
Query: 111 NAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQSN 151
AA +A+ ++GI M+ + V C N +V+LD ++ + N
Sbjct: 137 TAASVAVADAGIPMKDL--PVGCTAGKANGKVVLDLSKDEDN 176
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 2 DSLRELKSQLNILSRSDGSVIFS-QGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR--- 57
D R + Q+ ++ ++ GS Q T V+ S+YGP + + D +++ +R
Sbjct: 72 DKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQCEYRVAN 131
Query: 58 -----PKSGLSFVQDR--------LKESV-IKSTCESALLTMLHPRTSVILTIQELQDQG 103
+ +F+ + ++ S+ ++ E ++ +P++ + + LQD G
Sbjct: 132 FAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYCFILQDDG 191
Query: 104 SLLSCCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQ 149
S LS I+ A LAL N+GI M +++A C ++ + +I+D ++
Sbjct: 192 SALSAAISCASLALANAGIEMYDMVSA--CTTSELEGHIIVDPTNLE 236
>gi|403221406|dbj|BAM39539.1| 3' exonuclease, exosome component [Theileria orientalis strain
Shintoku]
Length = 258
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP-VEAKIQKTIIDKASVEVI----FRP 58
LR L +L+ S GS I + G T+V + P V AK + + ++EV F
Sbjct: 18 LRPLDVKLSTSSTFHGSCIINLGNTIVKCLVNLPKVSAKKAASDFGQFTLEVTSNDSFHT 77
Query: 59 KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
+ L ++ ++ E T E ++ +P + + D G LL + CLALI
Sbjct: 78 QKDLETLKTQILE-----TFEKHIIMDNYPCQIIEAYVIISNDDGGLLPTVLMGMCLALI 132
Query: 119 NSGISMRYILAAVS-CIINDKNE 140
+ GI + ++AA S C+ D+N+
Sbjct: 133 DCGIHVYDVIAACSVCVFKDRNQ 155
>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
Length = 138
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 86 LHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDA 145
L+P + + + ++ LQ GS C+NAA LALI++GI ++ + A S + + + ++D
Sbjct: 2 LYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASLGNGDVPLIDV 61
Query: 146 NQIQ 149
+ ++
Sbjct: 62 SHLE 65
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLS 63
Q + + GS G+T V+ S++GP E+K D S P G
Sbjct: 56 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQG 115
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ ++ +++ E A++ P+T+V + L+ GS L I+ A LAL ++GI
Sbjct: 116 -MDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 174
Query: 124 MRYILAAVSCIINDKNEVILD 144
+ ++ +VS KN +I+D
Sbjct: 175 IYDLVTSVSVSCFGKN-IIID 194
>gi|154273881|ref|XP_001537792.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415400|gb|EDN10753.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 252
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 6 ELKSQLNILSRSDGSVIF-SQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSF 64
+L + L L DGS + S ++ S+ GP+E+ + ++A++E++ +P G+S
Sbjct: 3 DLDASLTPLRFPDGSASYTSPTGDQILGSVNGPIESGRRDQRPEEATIEILVKPGVGVSG 62
Query: 65 VQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQ 102
V +R E +++ +L PR +++T+ L+++
Sbjct: 63 VGERYVEGILRGVLSRVILLREKSMPRAGIVITLVVLKNK 102
>gi|350644299|emb|CCD60951.1| ribonuclease pH related [Schistosoma mansoni]
Length = 237
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTC 78
GS + VV S+YGP EAKI + +A V+V P++G ++ E +
Sbjct: 19 GSATWDFAGHHVVFSIYGPDEAKINDELTHRAYVDVTVTPRTGQRTSKESELEIYLNHLM 78
Query: 79 ESALLTMLHPR---TSVILTIQELQDQGSLLSCCINAACLALIN 119
E + PR T + + + ++ INA LAL++
Sbjct: 79 ERLIDVKEFPRSKFTGRLFIVTGGTNHPRTVAAAINAISLALLH 122
>gi|84998296|ref|XP_953869.1| exosome complex exonuclease (Rrp46 ) [Theileria annulata]
gi|65304866|emb|CAI73191.1| exosome complex exonuclease (Rrp46 homologue), putative [Theileria
annulata]
Length = 265
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 18 DGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRPKSGLSFVQDRLKESVIK 75
+G++ G+T V+A + E K + +EV RP SG R ES++
Sbjct: 50 NGNLTGIGGRTTVIAILMFSSETKSKNAPGSFHNPHMEVFVRPASGTIKSSLRCIESILL 109
Query: 76 STCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCII 135
+ + + ++ L +Q ++D G LLS CIN L L SGI M + +VS I
Sbjct: 110 KIMQRLVKVDRLGKVTLSLRLQIMEDSGGLLSVCINTLILCLYLSGIEMINVPYSVSVGI 169
Query: 136 -------NDKNEVILDANQIQ 149
+N VILD +
Sbjct: 170 VRSGSDSMGENLVILDPTDYE 190
>gi|420155940|ref|ZP_14662791.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. MSTE9]
gi|394758267|gb|EJF41188.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. MSTE9]
Length = 739
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT-VVVASMYGPVEAKIQKTIIDKASVEVIFRPK 59
MD +R L +++ +L R GS +F++GQT V+ GPV + ++D E R
Sbjct: 321 MDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTIVTLGPV---TDRQLLDGIDDEEYKRYM 377
Query: 60 SGLSFVQDRLKESVIK-----------STCESALLTMLHPRT----SVILTIQELQDQGS 104
+F + E+ + E ALL ++ P ++ L + L GS
Sbjct: 378 HHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVIPPVEEFPYALRLVSEVLSSNGS 437
Query: 105 LLSCCINAACLALINSGISMRYILAAVSC 133
+ + LAL+++G+ ++ +A +SC
Sbjct: 438 TSQGSVCGSTLALMDAGVPIKAPVAGISC 466
>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
Length = 722
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVA-SMYGPVEAKIQKTIIDKASVEVIFRPK 59
MD +R L +++ +L R GS +F++GQT V++ + GPV + + ID+ + +
Sbjct: 340 MDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGPVSDEQRLDGIDENTFKRYMHNY 399
Query: 60 SGLSFVQDRLKESV--------IKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
+ S+ K S + E AL+ +L I + L GS
Sbjct: 400 NFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRVVSEVLSSNGSTSQ 459
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 460 GSICGSTLALMDAGVPIKAPVAGISC 485
>gi|340712756|ref|XP_003394921.1| PREDICTED: exosome complex component RRP41-like isoform 2 [Bombus
terrestris]
Length = 220
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-YILAAVS 132
+K E+ + ++PR+ + + ++ LQ GS +NAA LALI++GI ++ Y +
Sbjct: 55 LKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCTSVNAATLALIDAGIPIKNYAIGCTV 114
Query: 133 CIINDK---------NEVILDANQIQ 149
+IN+ +LDAN ++
Sbjct: 115 TLINNPSSEDEDNTLGRGVLDANYLE 140
>gi|261326393|emb|CBH09353.1| RNase PH-like protein [Trypanosoma brucei gambiense DAL972]
Length = 256
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 5 RELKSQ---LNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-----TII--------- 47
RE++ + + LS+ DGS +SQG T V ++ GP A+ + T I
Sbjct: 13 REMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHVNRAARIP 72
Query: 48 -DKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ + +I + +D + + S E+ + PR + + L D G+L
Sbjct: 73 QEGGTGRLIMMERRERERCEDGELKQFLASLVEAIVCLDRFPRCVLEAHVTVLMDDGALF 132
Query: 107 SCCINAACLALINSGISMRYILAAVSCII--------NDKNEVILDANQIQ 149
+ NA AL+++G+ R +AAVS ++ + E+ LD ++
Sbjct: 133 AVASNAIMCALLDAGVPCRSTIAAVSLLMCNPEASGNEGEPEIFLDPTAVE 183
>gi|81428020|ref|YP_395019.1| nucleoside triphosphatase [Lactobacillus sakei subsp. sakei 23K]
gi|78609661|emb|CAI54707.1| Putative nucleoside triphosphatase, Ham1 family [Lactobacillus
sakei subsp. sakei 23K]
Length = 410
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 32/155 (20%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R +K Q + L++ SV++ +G T V+A++ K+ T+I SG
Sbjct: 11 NDVRPVKVQWHYLTKQPASVLWQRGTTKVLAAVTEQATKKV--TLI-----------GSG 57
Query: 62 LSFVQ-DRLKESVIKSTCESALLTMLHP---RTSVILTIQELQDQGSLLSCCINAACLAL 117
L+ VQ D L+++ L T+L P +T +++++ L+D GSLL+ NA AL
Sbjct: 58 LTQVQSDWLQQT---------LTTLLAPALEKTGLLVSVTVLEDGGSLLAEASNAVFGAL 108
Query: 118 INSGISMRYI---LAAVSCIINDKNEVILDANQIQ 149
+ +++ AAV+ I+ NE ++DA+ +
Sbjct: 109 --QLLPEQFLPNRAAAVTAILT-GNETLVDASDTE 140
>gi|261204571|ref|XP_002629499.1| exosome complex subunit Rrp46 [Ajellomyces dermatitidis SLH14081]
gi|239587284|gb|EEQ69927.1| exosome complex subunit Rrp46 [Ajellomyces dermatitidis SLH14081]
gi|239614178|gb|EEQ91165.1| exosome complex subunit Rrp46 [Ajellomyces dermatitidis ER-3]
gi|327357680|gb|EGE86537.1| exosome complex subunit Rrp46 [Ajellomyces dermatitidis ATCC 18188]
Length = 253
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 9 SQLNILSRSDGSVIF-SQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+ L L DGS + S ++ S+ GP+E A+ ++A++EV+ +P G+S V
Sbjct: 6 ASLTPLRFPDGSASYTSPTGDHIIGSVNGPIEPARRDAQKSEEAAIEVLVKPGVGVSGVG 65
Query: 67 DRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQGSLLSCC-INAACLALINS 120
+R E +++ +L PR ++I+T+ L+++G+ +CL+++ S
Sbjct: 66 ERYVEGILRGILSRVILLREKSMPRKAIIITLVVLKNKGADGKVAERGGSCLSILPS 122
>gi|403415454|emb|CCM02154.1| predicted protein [Fibroporia radiculosa]
Length = 291
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTC 78
G+V +G+T + S+ GP+E + A+++V RP + +S + + +K+
Sbjct: 25 GAVTPVEGETKSLTSISGPIEVRPNLEQPSHATLDVHIRPLASISGTDSKALAATLKALL 84
Query: 79 ESALLTMLHPRTSVILTIQEL--------------QDQGSLLSCCINAACLALINS-GIS 123
+LL HPRT V + Q L +L++ +NA AL+N+ +
Sbjct: 85 TPSLLLSHHPRTLVQIVGQALCGSNSGSGMGSAGKGWNTTLIASLVNATTAALLNTAAVP 144
Query: 124 MRYILAAVS 132
MR ++ AVS
Sbjct: 145 MRGVVCAVS 153
>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
17241]
gi|167665127|gb|EDS09257.1| polyribonucleotide nucleotidyltransferase [Anaerotruncus
colihominis DSM 17241]
Length = 706
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVIF-- 56
MD +R L +++ +L R GS +F++GQT V VA++ EA+ I D+ I
Sbjct: 321 MDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQKRYIHHY 380
Query: 57 ----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQ 102
RP G +E + E AL ++ P TI + L
Sbjct: 381 NFPSYSVGETRPSRGPG-----RREIGHGALAERALEPVIPPVEEFPYTIRLVSEVLSSN 435
Query: 103 GSLLSCCINAACLALINSGISMRYILAAVSC 133
GS I + LAL+++G+ ++ +A +SC
Sbjct: 436 GSTSQGSICGSTLALMDAGVPIKRPVAGISC 466
>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
Length = 747
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQG--QTVVVASMYGPVEAKIQKTIIDKASVEVI----- 55
++R L S++ L R GS +F +G QT+V A++ EA+ + A+ +
Sbjct: 324 TIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGGATSKSFILHYN 383
Query: 56 FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQD----QGSLLSC 108
F P S F +E + E +L+ +L P TI+ + D GS
Sbjct: 384 FPPYSVGETGRFGNPGRREIGHGALAERSLVPVLPPEDVFPYTIRLVSDIMASNGSTSMA 443
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNE 140
I CLAL+++G+ + +A +SC + N+
Sbjct: 444 SICGGCLALMDAGVPIIAPVAGISCGLMTSNK 475
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLKE- 71
GS G T V+ S++GP E+K D S P G KE
Sbjct: 58 GSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFSTPVRGQG---SDCKEF 114
Query: 72 -SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAA 130
S++ + E A++ P+T+V + L+ GS LS ++ A LAL ++GI M ++A
Sbjct: 115 SSMLHKSLEGAIMLETFPKTTVDVFALVLESGGSDLSVIVSCASLALADAGIMMYDLVAG 174
Query: 131 VS 132
VS
Sbjct: 175 VS 176
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIF----- 56
+R +K + +L ++DGS G ++A+++GP E + ++ D+A + +
Sbjct: 27 EMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALIRARYNMAPF 86
Query: 57 ----RPKSGLSFVQDRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
R + G DR VI+ + A+ +P + + + ++ L+
Sbjct: 87 STPERRRPG----PDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSDAGTRVAG 142
Query: 110 INAACLALINSGISMRYILAAVSC 133
INAA LAL ++G++MR +++A S
Sbjct: 143 INAASLALASAGVAMRGLVSACSV 166
>gi|353241256|emb|CCA73082.1| hypothetical protein PIIN_07036 [Piriformospora indica DSM 11827]
Length = 267
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKASVEVIFRP-- 58
+ LR + ++S+++GS G T + ++Y P + K Q + I + +VEV F P
Sbjct: 44 EDLRPIFLTTGLVSQANGSAYIETGNTKIACAVYAPRQLKNTQYSDIGRLNVEVKFAPFS 103
Query: 59 ----KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
++ L V+DR ++ + A+ L P++S+ + I +++ G L C+
Sbjct: 104 SVRRRAHLRDVEDRTIGQLVHQSLLPAIQLHLFPKSSIDVFITVIENDG--LEGCV 157
>gi|320036264|gb|EFW18203.1| exosome complex subunit Rrp46 [Coccidioides posadasii str.
Silveira]
Length = 254
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 30 VVASMYGPVEAK---IQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTM- 85
++ S+ GP+E QK D+A++E++ +P G S V +R E +++S +L
Sbjct: 28 ILGSVNGPIEVNRRDAQKP--DEATLEIVIKPGVGGSGVGERYVEGILRSVLSRVILMRD 85
Query: 86 -LHPRTSVILTI---------QELQDQGS----LLSCCINAACLALINSGISMRYILAAV 131
R ++++T+ ++ ++G +L ++ A L+L+++ + M I A
Sbjct: 86 KAMARRAIVVTLVVVKNMVAEGKVDERGGSYLPILPSLLHTALLSLMSAAVPMSMIFTAA 145
Query: 132 SCIINDKNEVI 142
+ NE++
Sbjct: 146 LVAVTSHNEIV 156
>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
Length = 704
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 25/159 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVA----SMYGPVEAKIQKTIIDKASVEVIF 56
+D +R+L S+ IL R+ GS +F++GQT ++ G V+ IID VE
Sbjct: 321 LDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQ------IIDGLGVEESK 374
Query: 57 RPKSGLSFVQDRLKES-VIKST----------CESALLTMLHPRTSVILTI----QELQD 101
R +F Q + E+ I+ E AL ++ + TI + L+
Sbjct: 375 RFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRCVSEVLES 434
Query: 102 QGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNE 140
GS I A+ LA++++G+ ++ +A ++ + K E
Sbjct: 435 NGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGE 473
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA------SVEVIFRPKSGLSFVQDRLK 70
+ GS G T V+ S++GP E+K S P G +
Sbjct: 54 ASGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQG-SDHKGY 112
Query: 71 ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAA 130
S++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A+
Sbjct: 113 SSMLHKALEGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAS 172
Query: 131 VSCIINDKNEVI 142
VS KN VI
Sbjct: 173 VSVSCLGKNLVI 184
>gi|242783378|ref|XP_002480176.1| exosome complex subunit Rrp46, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720323|gb|EED19742.1| exosome complex subunit Rrp46, putative [Talaromyces stipitatus
ATCC 10500]
Length = 249
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 6 ELKSQLNILSRSDGSVIFSQGQTV--VVASMYGPVE--AKIQKTIIDKASVEVIFRPKSG 61
E + ++ L RSDGS I++ T ++ S+ GP+E A+ ++A++EV+ +P +
Sbjct: 3 EPTATISPLGRSDGSAIYTCPSTGFQILGSVNGPIELPARRDAQKPEEATIEVLVKPATA 62
Query: 62 LSFVQDRLKESVIKS 76
S + +R E+++KS
Sbjct: 63 QSAIGERYVENILKS 77
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMY---GPVEAKIQKTIIDKAS---VEVIFR 57
LR + ++++L R+ GS +F++G+T V+ ++ G E I ID+ V F
Sbjct: 337 LRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETEKFLVHYNFP 396
Query: 58 PKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTIQE----LQDQGSLLSCCI 110
P S + R +E + + AL +L P + TI+ L+ GS +
Sbjct: 397 PFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPPEEAFPYTIRVVGDVLESNGSSSMATV 456
Query: 111 NAACLALINSGISMRYILAAVS 132
A CLAL+++G+ ++ +A V+
Sbjct: 457 CAGCLALMDAGVPLKAPVAGVA 478
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+ R L + + DGS G T V+A + GP + K ++ L
Sbjct: 68 AFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGKWEEAYAKVTIT--------L 119
Query: 63 SFVQDRLKESVIKSTCESALLTML----HPRTSVILTIQELQDQGSLLSCCINAACLALI 118
V++ K + +++ S+L ++ +P + + + L D G +LS I A LAL
Sbjct: 120 KGVENETKVAELRADMTSSLSAVIFVNKYPGKVIDIEVTVLSDDGGVLSTAITAVTLALA 179
Query: 119 NSGISMRYILAAVSCIINDKNEVILD 144
+SGI + A+ + + I D
Sbjct: 180 HSGIEHMGLTASAHVTLRQNGDYITD 205
>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii L2-6]
Length = 714
Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVAS--MYGPVEAKIQKTIIDKASVEVI--- 55
++ +R L +++ IL R GS +F++GQT V+ + + G + ++ + D+ + I
Sbjct: 328 INEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHY 387
Query: 56 -FRPKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S R +E + E ALL +L TI + L GS
Sbjct: 388 NFPPYSVGEARAPRSPGRREIGHGALAERALLPVLPSLEEFPYTIRCVSEVLSSNGSTSQ 447
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 448 ASICGSTLALMDAGVPIKAPVAGISC 473
>gi|367006047|ref|XP_003687755.1| hypothetical protein TPHA_0K01890 [Tetrapisispora phaffii CBS 4417]
gi|357526060|emb|CCE65321.1| hypothetical protein TPHA_0K01890 [Tetrapisispora phaffii CBS 4417]
Length = 236
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 24 SQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE--SVIKSTCESA 81
+Q QT ++ S+YGP K + +AS+ + + S + LKE S + + S
Sbjct: 63 TQHQTSLITSVYGPRATK--GSFTSQASLSIQLKNGSSEKYNTTELKEVSSFLVNVFNSV 120
Query: 82 LLTMLHPRTSVILTIQELQDQ------------GSLLSCCINAACLALINSGISMRYILA 129
+ +P++ + + I L D+ ++L CI+A LALIN+GI + I
Sbjct: 121 INLSRYPKSGIDIFIYILYDKVLSEESKKSNNISAILPYCISAITLALINAGIEVDDIAT 180
Query: 130 A 130
A
Sbjct: 181 A 181
>gi|303313489|ref|XP_003066756.1| hypothetical protein CPC735_059810 [Coccidioides posadasii C735
delta SOWgp]
gi|240106418|gb|EER24611.1| hypothetical protein CPC735_059810 [Coccidioides posadasii C735
delta SOWgp]
Length = 259
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 30 VVASMYGPVE---AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTM- 85
++ S+ GP+E QK D+A++E++ +P G S V +R E +++S +L
Sbjct: 33 ILGSVNGPIELNRRDAQKP--DEATLEIVIKPGVGGSGVGERYVEGILRSVLSRVILMRD 90
Query: 86 -LHPRTSVILTI---------QELQDQGS----LLSCCINAACLALINSGISMRYILAAV 131
R ++++T+ ++ ++G +L ++ A L+L+++ + M I A
Sbjct: 91 KAMARRAIVVTLVVVKNMVAEGKVDERGGSYLPILPSLLHTALLSLMSAAVPMSMIFTAA 150
Query: 132 SCIINDKNEVI 142
+ NE++
Sbjct: 151 LVAVTSHNEIV 161
>gi|356573319|ref|XP_003554809.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Glycine
max]
Length = 959
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVV--ASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R L + +S GS +FS+G+T V+ ++ P +A+ ++++ + +
Sbjct: 352 LDEVRPLYCEAGYVSMLHGSALFSRGETQVLCTVTLGAPTDAQRLESVVGPPTKRFMLHY 411
Query: 56 -FRP--------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQ 102
F P + GL+ +E + E ALL +L P T+ + +
Sbjct: 412 SFPPFCINEVGKRGGLN-----RREVGHGTLAEKALLAVLPPEDDFPYTVRVNSEVMASD 466
Query: 103 GSLLSCCINAACLALINSGISMRYILAAVS 132
GS + +AL+++GI +R +A VS
Sbjct: 467 GSTSMATVCGGSMALMDAGIPVREHVAGVS 496
>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
Length = 302
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--------- 52
D +R++ + +++ ++GS G T++ S++GP I+ + ID+AS
Sbjct: 56 DEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGP--RPIRGSFIDRASFSVECKFLPY 113
Query: 53 -----EVIFRPKSGLSFVQDRLK----ESVIKSTCESALLTML----HPRTSVILTIQEL 99
E+ F K+ R E I S E++LL + +P++++ + + +
Sbjct: 114 VTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVSVI 173
Query: 100 QDQGSL---------LSCCINAACLALINSGISMRYILAAVSCIINDK-NEVILDA 145
+ ++ IN + LAL++SGI ++ I+ + +N K NE+ LD
Sbjct: 174 STNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSGQVNLNQKSNELTLDP 229
>gi|357017435|gb|AET50746.1| hypothetical protein [Eimeria tenella]
Length = 320
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAV 131
+ +++ E +L L+ +T + ++I L D GS+LS + AA LAL ++G++MR +L
Sbjct: 159 AAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLP-- 216
Query: 132 SCII 135
SC +
Sbjct: 217 SCTV 220
>gi|320584037|gb|EFW98249.1| exosome component [Ogataea parapolymorpha DL-1]
Length = 239
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 21/129 (16%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV-----IFRP-------KSGLSFVQ 66
GS +T+++ S+YGP ++ D+AS++V F P + ++ +
Sbjct: 45 GSSYLENDKTIIITSIYGP-RPNFTRSFNDQASLKVGIELSKFLPLDNLKDNRKNITPDK 103
Query: 67 DRL---KESVIKSTCESALLTMLHPRTSVILTIQ--ELQDQGSL---LSCCINAACLALI 118
+RL ES + S +S +L +P++S+ + +Q L SL L IN +AL+
Sbjct: 104 ERLIASLESFMLSNFQSLILLQNYPKSSIEIFVQVVALNPAHSLVYTLKNIINGVSVALV 163
Query: 119 NSGISMRYI 127
+SG+++R +
Sbjct: 164 DSGLNIRSV 172
>gi|396082222|gb|AFN83832.1| exosome RNAse PH-like protein [Encephalitozoon romaleae SJ-2008]
Length = 188
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+ +KS + ++ GS FS T V ++GP +A + +KA ++V ++ ++
Sbjct: 1 MSRIKSMIGVIPHCTGSSRFSYNNTTVFCIVHGPSDAISRHEDPEKAFLDVRWKDMVLIN 60
Query: 64 -FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ D+ V++ ++ L ++ + + + + L C +NAA LAL + GI
Sbjct: 61 GRIYDKYFSRVVERVISKNIILELDAWKTIQIIFNVVGEARNALFCAVNAALLALADGGI 120
Query: 123 SMRYILAAVSCIINDKNEVILDANQ 147
++ + A S N++ V+ D ++
Sbjct: 121 PLKSMFYASSSFTNEEEVVVFDNDE 145
>gi|84999242|ref|XP_954342.1| exosome complex exonuclease rrp41 [Theileria annulata]
gi|65305340|emb|CAI73665.1| exosome complex exonuclease rrp41, putative [Theileria annulata]
Length = 245
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSC 133
+KST + +++ + +++ + I ++ GS+ S +NA LALI++G+S++ I+++ +
Sbjct: 99 VKSTYQEMIISHCYKTSAISIFINIIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTV 158
Query: 134 IINDKNEVILDANQIQSN 151
D + V+ D NQ++ N
Sbjct: 159 SYLD-STVLTDPNQMEIN 175
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVE-----VIFRPKSGLSF 64
Q + + GS G+T V+ S++GP E+K D + F
Sbjct: 55 QTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATGIRGQG 114
Query: 65 VQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
+ ++ ++ E A++ P+T+V + L+ GS L I+ A LAL ++GI M
Sbjct: 115 LDNKEYSEMLHKALEGAVMLDTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMM 174
Query: 125 RYILAAVSCIINDKNEVILD 144
++ +VS KN VI+D
Sbjct: 175 YDLVTSVSVSCLGKN-VIID 193
>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
Length = 252
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS--VEVIFRP--------- 58
+ ++ + GS +V S+YGP I+ + I+KAS VE F P
Sbjct: 45 KTGLVDTASGSAYVEADDCIVQVSVYGP--RPIRGSFIEKASFSVECKFLPYVTKVAAEH 102
Query: 59 -------KSGLSFVQDRLKESVIKSTCESALLTML----HPRTSVILTIQELQDQGS--- 104
K G++ ++ R I + E+ALL L +P++++ + + + ++ +
Sbjct: 103 QNTNPNGKPGMNSIEQR-----ISTYVETALLPCLLLENYPKSTIDIYVTVIANKSASLL 157
Query: 105 -LLSCCINAACLALINSGISMRYILAAVSCIINDKNE 140
L + +N + LAL++S I ++ I+ I D+N+
Sbjct: 158 ELTNWIVNCSSLALVDSAIEIKDIVTGGVATIEDEND 194
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 14 LSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV--EVIF------RPKSGLSFV 65
+S++ GS T ++ ++YGP E ++ +A+V E+ F R + +
Sbjct: 21 VSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFATFSCRRRRRHIQDS 80
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
Q++ +I + + +P++ + + I LQ+ GS+L I AA +AL +SGI +
Sbjct: 81 QEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITAASVALADSGIEI 139
>gi|410080930|ref|XP_003958045.1| hypothetical protein KAFR_0F03140 [Kazachstania africana CBS 2517]
gi|372464632|emb|CCF58910.1| hypothetical protein KAFR_0F03140 [Kazachstania africana CBS 2517]
Length = 217
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKE- 71
I+S +GS I +T ++ S+YGP K +T +A E+ KS L F ++LKE
Sbjct: 43 IISNCNGSSIVENSKTSILCSVYGP---KATRTSTFEARCELNVILKSDL-FETNKLKEL 98
Query: 72 -SVIKSTCESALLTMLHPRTSVI----LTIQELQDQGSLLSCCINAACLALINSGISMRY 126
+ S ES + L+P+ + L I+E+ + + +++ L LI++ + +
Sbjct: 99 SYFLISLLESFICLDLYPKAGIDIFINLNIEEVNELSWYIPYIVSSIVLGLIDAEVEISN 158
Query: 127 ILAAVSCIINDKNEVILDANQI 148
I VSC ++ N + D +I
Sbjct: 159 I---VSCGYHEGNVICFDDRKI 177
>gi|159111134|ref|XP_001705799.1| 3' exoribonuclease, putative [Giardia lamblia ATCC 50803]
gi|157433889|gb|EDO78125.1| 3 exoribonuclease, putative [Giardia lamblia ATCC 50803]
Length = 261
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMY--GPVEAKIQKTIIDKASVEVIFRPKSGL 62
RE N +S S GSV F G T ++AS+Y P + + T+ +V +R S +
Sbjct: 16 REPTVLFNCISTSTGSVRFRLGGTDLIASVYLDAPQNSPFKLTVEALPTVADAYRLTSNI 75
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ + SV+ S ++ L + R+ ++L++ L D GS ++ NA L L+ G+
Sbjct: 76 RVLVGSVLSSVVLSEQKTCSLCV-SGRSLLVLSLLILSDDGSAVASACNAILLTLMAIGV 134
Query: 123 SMRYILAAVS---CIINDKNEVILDANQIQ 149
++ Y+ AVS +D +++D ++ +
Sbjct: 135 TLPYVPCAVSLGFTRTSDSRTMLIDPSKTE 164
>gi|452824943|gb|EME31943.1| exosome complex component MTR3, animal type [Galdieria sulphuraria]
Length = 264
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 19 GSVIFSQGQTVVVASMYGP-----VEAKIQKTIIDKASVEVIFRPKSGLSFV-------- 65
GS G+T V+ ++ GP + ++ T+ + + EV+ KS +
Sbjct: 47 GSGYVELGKTKVIVAVQGPRPPIRIRGGVENTMNGRITCEVV---KSSFCYYSYESTRMA 103
Query: 66 --------QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLAL 117
++RL + + E ++ +P+ S+ L + L+D GS + A LAL
Sbjct: 104 NVGRGVSEEERLLSTRLVRVFEPIVILDKYPKCSIDLYVVILEDDGSAFAAMTLATSLAL 163
Query: 118 INSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
++ I + ++++V+ I+ K E ++D ++ +S
Sbjct: 164 ADASIEIISVVSSVTVAISTKQEYLVDPDRTESE 197
>gi|384222217|ref|YP_005613383.1| hypothetical protein BJ6T_85520 [Bradyrhizobium japonicum USDA 6]
gi|354961116|dbj|BAL13795.1| hypothetical protein BJ6T_85520 [Bradyrhizobium japonicum USDA 6]
Length = 1231
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 24 SQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALL 83
+ +T ++ ++G E + + D +E++ R KS +FV DR++E+ +
Sbjct: 24 NSAETAMLCLVHGTSEQTLHADLKDATRLELVRRLKSSYAFVHDRVQEAAYALQPDQDRR 83
Query: 84 TMLHPRTSVILTIQELQDQ 102
T LH R ++L Q D+
Sbjct: 84 TALHLRIGLVLAAQLTPDE 102
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE----AKIQKTIIDKASVEVIFR 57
++ R + Q +L G+V G T ++ S+ GP E A + T + + V +
Sbjct: 47 NTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPT---EGQIYVFLK 103
Query: 58 PKSGLS--------FVQDRLKESVIKSTCESALLTM----LHPRTSVILTIQELQDQGSL 105
S S F + + I++ ESAL ++ L + + + I L D G +
Sbjct: 104 NISAESNSLSGSNSFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGV 163
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
L+ + A+ LALI+SGI + + A ++ +I+D
Sbjct: 164 LAASLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVD 202
>gi|392864382|gb|EJB10790.1| exosome complex subunit Rrp46 [Coccidioides immitis RS]
Length = 548
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 30 VVASMYGPVEAK---IQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLT-- 84
++ S+ GP+E QK D+A++E++ +P G S V +R E +++S +L
Sbjct: 322 ILGSVNGPIEVNRRDAQKP--DEATLEIVVKPGVGGSGVGERYVEGILRSVLSRVILMRD 379
Query: 85 MLHPRTSVILTIQELQDQ----------GS---LLSCCINAACLALINSGISMRYILAAV 131
R ++++T+ +++ GS +L ++ A L+L+++ + M I A
Sbjct: 380 KAMARRAIVVTLVVVKNMVAEGKVDERGGSYLPILPSLLHTALLSLMSAAVPMSMIFTAA 439
Query: 132 SCIINDKNEVI 142
+ NE++
Sbjct: 440 LVAVTSHNEIV 450
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-----AKIQKTIIDKASVEV- 54
+ LR + Q++ + +DGS F G T V+ ++ GP + + +AS+EV
Sbjct: 137 WNELRCISGQMSTQAAADGSSYFEMGNTKVICTVVGPRQQTRSGGGGGRDQTKEASIEVE 196
Query: 55 --------IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ R K S + + + I S S + T L+P++++ + + L G+LL
Sbjct: 197 IGIAGFSGMDRKKRSRSDKRTQEMQYTISSAFASTVFTSLYPQSTISIVLHVLSQDGALL 256
Query: 107 SCCINAACLALINSGISMRYILAA 130
+ C+NAA LALI++G+ M+ +AA
Sbjct: 257 AACLNAATLALIDAGVPMKDYVAA 280
>gi|401827619|ref|XP_003888102.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
gi|392999302|gb|AFM99121.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
Length = 188
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK---SGLS 63
++S ++++ GS FS T V +++GP +A ++ +KA ++V ++ +G
Sbjct: 4 IRSMISVIPHCTGSSRFSYNNTTVFCTVHGPSDATSRQEDPEKAFLDVRWKDMILINGR- 62
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ D+ VI+ ++ L ++ + + + + L C +NAA LAL + GI
Sbjct: 63 -IYDKYFSKVIERVLSKNIILELDACRTIQVGFNVVGETRNALFCAVNAALLALADGGIP 121
Query: 124 MRYILAAVSCIINDKNEVILDA 145
++ + A S ++++ +I D
Sbjct: 122 LKSMFYASSSFMHEEEVIIFDG 143
>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
Length = 721
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASM---YGPVEAKIQKTIIDKAS---VEVIFR 57
+R + ++++L RS GS IF++G+T V+ ++ G E I +D++ V F
Sbjct: 335 IRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESEDFLVHYNFP 394
Query: 58 PKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTIQ----ELQDQGSLLSCCI 110
P S + R +E + + AL ML + + TI+ L+ GS +
Sbjct: 395 PYSTGEVKRLRGVSRREVGHGNLAKRALKPMLPEKDAFPYTIRVVGDVLESNGSSSMATV 454
Query: 111 NAACLALINSGISMRYILAAVS 132
A CLAL+++G+ ++ +A ++
Sbjct: 455 CAGCLALMDAGVPIKKPVAGIA 476
>gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
ACS-171-V-Col3]
gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
ACS-171-V-Col3]
Length = 714
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +ID+ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIDQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKADDNVVIL 476
>gi|443688633|gb|ELT91268.1| hypothetical protein CAPTEDRAFT_224286 [Capitella teleta]
Length = 176
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 99 LQDQGSLLSCCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
LQ G C +NAA LALI++GI M+ Y+ A + I K+ +LD N ++
Sbjct: 56 LQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFI--KDTALLDINYLE 105
>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
Length = 303
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
+ LR + + ++ +DGS FS G T V+ +YGP K Q I D SV V + S
Sbjct: 53 FEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCK-QNPIEDGLSVSVEYTIGS 111
Query: 61 GLSFVQD-------------------RLKESVIKSTCESALLTMLHPRTSVILTIQELQD 101
F +D ++K +++ S + + R+S+ + D
Sbjct: 112 ---FCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDCYFYIIDD 168
Query: 102 QGSLLSCCINAACLALINSGISMRYILAAVSCI 134
GS S I+AACL+L N+ I + + +A + I
Sbjct: 169 DGSAFSAAISAACLSLCNAKIEIIGLFSATNII 201
>gi|335046973|ref|ZP_08539996.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333760759|gb|EGL38316.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 697
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV-----------VASMYGPVEAKIQKTIIDK 49
+D +R L++++++L R GS +F +GQT + V + G E + +K + +
Sbjct: 318 IDQIRPLEAEVDLLPRVHGSAMFKRGQTQILNVTTLAPLSEVQKVEGMNEFETEKRYLHQ 377
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSL 105
+ ++ S R +E + E AL+ +L P I + ++ GS
Sbjct: 378 YNFPGYSVGEAKASRGPGR-REIGHGALAEKALIPVLPPVEEFPYAIRSVSETMESNGST 436
Query: 106 LSCCINAACLALINSGISMRYILAAVSC--IINDKNEVILDANQIQ 149
A+C++L+ +G+ +R +A +SC + + +E L IQ
Sbjct: 437 SMASTCASCMSLMAAGVPIRKPVAGISCGLVTGESDEDYLVLTDIQ 482
>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
14484]
gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
14484]
Length = 704
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMY--GPVEAKIQKTIID-----KASVEVIF 56
+R + +L+ R GS IF++GQT A++ P EA++ ++I + + + F
Sbjct: 320 IRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEEAQMVESIYEGEVFKRFMLHYNF 379
Query: 57 RPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE----LQDQGSLLSCC 109
P S S+ R +E + E AL ++ P I+ L+ GS
Sbjct: 380 PPFSTGEARSWGPPRRREIGHGALAERALEPLIPPEEEFPYIIRVVSNILESNGSTSMAT 439
Query: 110 INAACLALINSGISMRYILAAVS 132
+ AA LAL ++G+ M+ A ++
Sbjct: 440 VCAASLALFDAGVPMKKHAAGIA 462
>gi|71033573|ref|XP_766428.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353385|gb|EAN34145.1| hypothetical protein TP01_0907 [Theileria parva]
Length = 256
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 26 GQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALL 83
G+T V++ + E K + K +EV RP SG IKS+ S
Sbjct: 62 GRTSVISILMFSSETKSKNAPGNFHKPHMEVFVRPSSG-----------TIKSSIRSMEC 110
Query: 84 TMLH-----------PRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
T+L + ++ L +Q ++D G LLS CIN L L SGI M + +VS
Sbjct: 111 TLLKIMQRLVKVDKLGKVTLSLRVQIMEDSGGLLSVCINTLILCLYLSGIEMISVPYSVS 170
>gi|253745275|gb|EET01302.1| Hypothetical protein GL50581_1422 [Giardia intestinalis ATCC 50581]
Length = 264
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAV 131
S ++ ES +L P T V+L I L GS L+ A LALI+SGI +RY+ V
Sbjct: 106 SPLQKMLESMVLLEALPATRVVLRILPLSTNGSELAWLHLAGMLALIDSGIPLRYLSTMV 165
Query: 132 SCIIN-DKNE----VILDA 145
++ DK E ++LD
Sbjct: 166 GVGLSCDKQESSHQIVLDP 184
>gi|363896241|ref|ZP_09322795.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB7]
gi|361961249|gb|EHL14467.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB7]
Length = 697
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV-----------VASMYGPVEAKIQKTIIDK 49
+D +R L++++++L R GS +F +GQT + V + G E + +K + +
Sbjct: 318 IDQIRPLEAEVDLLPRVHGSAMFKRGQTQILNVTTLAPLSEVQKVEGMNEFETEKRYLHQ 377
Query: 50 ASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSL 105
+ ++ S R +E + E AL+ +L P I + ++ GS
Sbjct: 378 YNFPGYSVGEAKASRGPGR-REIGHGALAEKALIPVLPPVEEFPYAIRSVSETMESNGST 436
Query: 106 LSCCINAACLALINSGISMRYILAAVSC 133
A+C++L+ +G+ +R +A +SC
Sbjct: 437 SMASTCASCMSLMAAGVPIRKPVAGISC 464
>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
M21/2]
gi|158444314|gb|EDP21318.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii M21/2]
Length = 713
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVAS--MYGPVEAKIQKTIIDKASVEVI--- 55
++ +R L +++ IL R GS +F++GQT V+ + + G + ++ + D+ + I
Sbjct: 328 INEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHY 387
Query: 56 -FRPKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S R +E + E AL+ +L TI + L GS
Sbjct: 388 NFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSEVLSSNGSTSQ 447
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 448 ASICGSTLALMDAGVPIKAPVAGISC 473
>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 716
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVAS--MYGPVEAKIQKTIIDKASVEVI--- 55
++ +R L +++ IL R GS +F++GQT V+ + + G + ++ + D+ + I
Sbjct: 328 INEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHY 387
Query: 56 -FRPKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S R +E + E AL+ +L TI + L GS
Sbjct: 388 NFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSEVLSSNGSTSQ 447
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 448 ASICGSTLALMDAGVPIKAPVAGISC 473
>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
Length = 714
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVAS--MYGPVEAKIQKTIIDKASVEVI--- 55
++ +R L +++ IL R GS +F++GQT V+ + + G + ++ + D+ + I
Sbjct: 328 INEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHY 387
Query: 56 -FRPKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S R +E + E AL+ +L TI + L GS
Sbjct: 388 NFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSEVLSSNGSTSQ 447
Query: 108 CCINAACLALINSGISMRYILAAVSC 133
I + LAL+++G+ ++ +A +SC
Sbjct: 448 ASICGSTLALMDAGVPIKAPVAGISC 473
>gi|358374641|dbj|GAA91231.1| exosome complex subunit Rrp46 [Aspergillus kawachii IFO 4308]
Length = 249
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 9 SQLNILSRSDGSVIF---SQGQTVVVASMYGPVEAKIQKTII--DKASVEVIFRPKSGLS 63
+ L L+R+DGS + S G ++ S+ PVE ++ + ++A+VEV +P + +
Sbjct: 6 ATLTPLARADGSASYLCPSTGSNIL-GSVNAPVELPGRRDALKPEEATVEVFVKPGTAPA 64
Query: 64 FVQDRLKESVIKSTCESALLT--MLHPRTSVILTI 96
V +R E +IK +L +PR V++T+
Sbjct: 65 GVSERYVEGIIKGVLGRLILGRERGYPRRGVVVTL 99
>gi|440292961|gb|ELP86133.1| exosome complex exonuclease RRP42, putative [Entamoeba invadens
IP1]
Length = 265
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
RE + + +++ +++GSV F G+T VV + +E Q T ++ V+ R KSG
Sbjct: 30 FREFRCERDVIDQANGSVRFFLGRTEVVVGIKCELEEP-QATSSNEGRYTVLVR-KSGAD 87
Query: 64 FVQDRLKESVIKSTCESALLTMLHP------RTSVILTIQEL--QDQGSLLSCCINAACL 115
V+D E +I + E+A ML + ++ + + +D G+++ C A
Sbjct: 88 NVRDVSIEQMITVSLENAGKEMLKKLCVSPGKLCWVVYVDAIVVEDDGNVMDCVSLAVRA 147
Query: 116 ALINSGISMRYILAAVSCIINDKNEVILDANQ 147
AL+++ ++ V+ I D EV +D N+
Sbjct: 148 ALLST------LIPVVTVISGDAEEVQIDINK 173
>gi|449018157|dbj|BAM81559.1| similar to ribosomal RNA processing exonuclease RRP41
[Cyanidioschyzon merolae strain 10D]
Length = 313
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
+++ + QL +LSR +GS + G+T VVA+++GP + T D V+ + GL
Sbjct: 34 AMKSFRCQLGVLSRPEGSAVCQLGKTKVVAAVFGPRPPQ-GSTDTDTELATVVVEYRQGL 92
Query: 63 S 63
S
Sbjct: 93 S 93
>gi|84998004|ref|XP_953723.1| 3' exonuclease, exosome component [Theileria annulata]
gi|65304720|emb|CAI73045.1| 3' exonuclease, exosome component, putative [Theileria annulata]
Length = 254
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGP-VEAKIQKTIIDKASVEV----I 55
+ LR L+ +++ S GS I + G T+ + P + K T + ++E+ +
Sbjct: 13 FNELRPLEIKMSTSSTFSGSCIINLGNTIAKCLVNLPKISTKKASTEYGQFTLELTSNYL 72
Query: 56 FRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACL 115
F L + LK +I+ T E +L +P + I D G LL I CL
Sbjct: 73 FHTPKYL----ETLKSHIIE-TFERHILLQNYPSQIIEAYIIVSNDDGGLLPALIMGMCL 127
Query: 116 ALINSGISMRYILAAVS-CIINDKNEVI---LDANQIQ 149
ALI+ GI + +++A S CI D + + LD N+ +
Sbjct: 128 ALIDCGIQVYDVISACSVCIFKDHDGNLVTGLDFNKTE 165
>gi|388583110|gb|EIM23413.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 254
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK-IQKTIIDKASVEVIFRPKS 60
D LR + + ++S + GS G T + ++YGP + K + K +VE+ P S
Sbjct: 37 DELRPVFIKPGLISSASGSTYIECGNTKIACAVYGPKQIKNAPYSSTGKLNVEIKHAPFS 96
Query: 61 GLSFVQDRLKE---SVIKSTCESALLTML----HPRTSVILTIQELQDQG---SLLSCCI 110
S +D +KE + + S ALL L + + + L + +QD LL+
Sbjct: 97 S-SIRRDPVKELEATHLSSQVTQALLPSLRLENYEKMQIDLFVTIIQDDSLDFGLLANIT 155
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILD 144
AA AL +SG+ M ++ + + +E++LD
Sbjct: 156 TAAGTALASSGLEMNGLVVGATVAFKE-DEMLLD 188
>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
Length = 725
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT--VVVASMYGPVEAKIQKTIIDK 49
+D +R + + N+L R+ GS +F++GQT + VA+ G ++A++ + DK
Sbjct: 348 LDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDK 398
>gi|253745727|gb|EET01463.1| 3' exoribonuclease, putative [Giardia intestinalis ATCC 50581]
Length = 265
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMY--GPVEAKIQKTIIDKASVEVIFRPKSGL 62
RE N +S S GSV F G T ++AS+Y P A + + +V +R S +
Sbjct: 16 REPTVLFNCISTSTGSVRFRLGGTDLIASVYLDTPQNAPFRLIVEALPTVSDAYRLTSSI 75
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ + + S++ S ++ L R+ ++L++ + D GS+++ NAA L L+ G+
Sbjct: 76 NVLVGSVLSSIVLSEQKTCSLCT-SGRSLLVLSLLIISDDGSVVASACNAALLTLMAIGV 134
Query: 123 SMRYILAAVS 132
++ Y AVS
Sbjct: 135 TLPYAPCAVS 144
>gi|145235485|ref|XP_001390391.1| exosome complex subunit Rrp46 [Aspergillus niger CBS 513.88]
gi|134058076|emb|CAK49162.1| unnamed protein product [Aspergillus niger]
gi|350632909|gb|EHA21276.1| hypothetical protein ASPNIDRAFT_213563 [Aspergillus niger ATCC
1015]
Length = 249
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 9 SQLNILSRSDGSVIF---SQGQTVVVASMYGPVEAKIQKTII--DKASVEVIFRPKSGLS 63
+ L L+R+DGS + S G ++ S+ PVE ++ + ++A+VEV +P + +
Sbjct: 6 ATLTPLARADGSASYLCPSTGSNIL-GSVNAPVELPGRRDALKPEEATVEVFVKPGTAPA 64
Query: 64 FVQDRLKESVIKSTCESALLT--MLHPRTSVILTI 96
V +R E +IK +L +PR V++T+
Sbjct: 65 GVGERYVEGIIKGVLGRLILGRERGYPRRGVVVTL 99
>gi|324512760|gb|ADY45272.1| Exosome complex exonuclease MTR3 [Ascaris suum]
Length = 202
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 12 NILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQDRLK 70
+ GS G T VV ++ GP E +K T + + V +GLS V
Sbjct: 4 GVFDTRKGSAFIEMGATKVVCTIDGPKEPSKSMDTDCSEGVINVQVVGVAGLSHV----I 59
Query: 71 ESVIKSTCESALLTMLH-PRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILA 129
ES ++ A++ + H + V + + L+D G +L+ + + LAL N+GI
Sbjct: 60 ESALR-----AIIALEHLSKMQVDVEVTVLEDDGGVLAAALMCSSLALCNAGIQTLDFCV 114
Query: 130 AVSCIINDKNEVILDANQIQSN 151
A II + + LDA+ + +
Sbjct: 115 AAHVIITEDGSLKLDASSSEGD 136
>gi|256081452|ref|XP_002576984.1| ribonuclease pH related [Schistosoma mansoni]
Length = 239
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
GS + VV S+YGP EAKI + +A V+V P++G
Sbjct: 19 GSATWDFAGHHVVFSIYGPDEAKINDELTHRAYVDVTVTPRTG 61
>gi|255722417|ref|XP_002546143.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
gi|240136632|gb|EER36185.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
Length = 288
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 41/156 (26%)
Query: 13 ILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA--SVEVIFRP------------ 58
+++ ++GS T++ S++GP I+ + ID+A S+E F P
Sbjct: 44 VITNANGSAYLEINNTIIEVSIFGP--RPIRGSFIDRATLSIECKFLPHISPQPQSNIFN 101
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRT------SVILTIQEL------- 99
++G++ V+ +L + ++S L+ +P++ S+I +E+
Sbjct: 102 DGSKNIRTGMTNVEHKLS-NYLESCFLPCLVLEKYPKSTIDIQVSIISVDKEMLNDDDGR 160
Query: 100 --QDQGSLLSCCINAAC---LALINSGISMRYILAA 130
D SLL C C LAL++SGI MR I+++
Sbjct: 161 TNNDNSSLLWLCQWMVCCCSLALVDSGIEMRDIVSS 196
>gi|443708056|gb|ELU03350.1| hypothetical protein CAPTEDRAFT_146569, partial [Capitella teleta]
gi|443726159|gb|ELU13440.1| hypothetical protein CAPTEDRAFT_126626, partial [Capitella teleta]
Length = 123
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 97 QELQDQGSLLSCCINAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
Q LQ G C +NAA LALI++GI M+ Y+ A + I K+ +LD N ++
Sbjct: 1 QVLQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFI--KDTALLDINYLE 52
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R + Q L + GS S G T V +++GP A + + D+ ++V +R G
Sbjct: 51 EEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAG-RSDLQDRGFIKVDYR---G 106
Query: 62 LSFVQDRLKES---------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
F Q + ++ +S +L +P++ + ++ L++ G L+ +
Sbjct: 107 SPFFQRSSADGGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFLEEDGGALAAALTC 166
Query: 113 ACLALINSGISMRYILAAVS 132
A LAL ++G+ I+ S
Sbjct: 167 AGLALADAGVECHDIITGAS 186
>gi|39938737|ref|NP_950503.1| polyribonucleotide nucleotidyltransferase [Onion yellows
phytoplasma OY-M]
gi|81402500|sp|Q6YQX2.1|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows
phytoplasma OY-M]
Length = 715
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPV-EAKIQKTIIDKASVEVI--- 55
++ +R L+SQ+++L R+ GS +F++GQT +A++ G + E+KI + D+ + +
Sbjct: 331 LEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESKIIDGLSDEQNKRFMLHY 390
Query: 56 -FRPKS----GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE----LQDQGSLL 106
F P S G R +E + E A+ +L TI+ L+ GS
Sbjct: 391 NFPPFSVGAVGRYTAPSR-REIGHGTLAEKAISQVLPEEKDFPYTIRVVSEILESNGSSS 449
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ A+ LAL+ SG+ ++ +A +S
Sbjct: 450 QATVCASSLALMASGVPLKKAVAGMS 475
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS---VEVIFR 57
MD +R Q+ ++ + GS T V+ ++YGP + + +V F
Sbjct: 30 MDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGGQLICDVKFA 89
Query: 58 P--------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
P +G + L + V K+ + L L P+ V + LQ GS L+
Sbjct: 90 PFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKL-PKCVVSCFVVILQSDGSELATA 148
Query: 110 INAACLALINSGISMRYILAAVSC-IINDK 138
I A LAL ++ I MR ++ A + I++DK
Sbjct: 149 IMCASLALADAAIEMRDLVTACNAGIVDDK 178
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|419823827|ref|ZP_14347361.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|388472066|gb|EIM08855.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
Length = 705
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVA----SMYGPVEAKIQKTIIDKASVEVIF 56
+D +R L S++ ILSR+ GS +F++GQT ++ G V+ I+D VE
Sbjct: 322 VDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQ------ILDGLGVEESK 375
Query: 57 RPKSGLSFVQDRLKESVI-----------KSTCESALLTMLHPRTSVILTI----QELQD 101
R +F Q + E+ + E AL ++ TI + L+
Sbjct: 376 RFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSEVLES 435
Query: 102 QGSLLSCCINAACLALINSGISMRYILAAVS 132
GS I A+ LA++++G+ ++ +A ++
Sbjct: 436 NGSTSQASICASTLAMMDAGVPIKAPVAGIA 466
>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
Length = 705
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQG--QTVVVASMYGPVEAKIQKTII----DKASVEV 54
++ +R++ ++ +LSR+ GS +F++G QT+V+ ++ +A+I+ I+ D +
Sbjct: 326 LNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKLDHFILHY 385
Query: 55 IFRPKS----GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQ------ELQDQGS 104
F P S GL V R +E + + ++ ++ ++ TI+ E S
Sbjct: 386 NFLPYSVGEIGLVGVPKR-REIGHGNLVKRGMIAVMPNFSNFSYTIRVVSEVIESNGSSS 444
Query: 105 LLSCCINAACLALINSGISMRYILAAVSC-IINDK-NEVIL 143
+ S C LA++++GI ++ +A +S +I +K N VIL
Sbjct: 445 MASAC--GTSLAMMDAGIPIKSAIAGISIGLIKEKENFVIL 483
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFR-- 57
+ +R + + ++S++ GS +T V+ +YGP + I K D+ ++V +
Sbjct: 12 EQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRLDVDVKLA 71
Query: 58 ------PKSGLS-FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
P+ ++ +R S++ A++T P+T+V + L+ GS L I
Sbjct: 72 TFATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLEANGSELCATI 131
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILD 144
AA AL +G++MR +++A + D N ++LD
Sbjct: 132 AAASAALCEAGVAMRDLVSACTGGGADGPNALLLD 166
>gi|226291766|gb|EEH47194.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 237
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 36 GPVE-AKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLH--PRTSV 92
GP+E + ++A++EV+ +P +G+S V +R E +++S +L PR +
Sbjct: 18 GPIEVGRRDAQKPEEATIEVLVKPGAGMSGVGERYVEGILRSILSRVILVREKSMPRRGI 77
Query: 93 ILTIQELQDQGS 104
++T+ L+++G+
Sbjct: 78 VITLVVLENKGA 89
>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
Length = 759
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
++ +R L +++ +L R GS +F++GQT V V ++ +A++ + D I
Sbjct: 369 INEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYKRYIHHY 428
Query: 56 -FRPKSGLSFVQDR---LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S R +E + E AL+ +L ++ TI + L GS
Sbjct: 429 NFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEFPYTIRCVSEVLSSNGSTSQ 488
Query: 108 CCINAACLALINSGISMRYILAAVSC-IIND 137
I + LAL+++G+ ++ +A +SC +I D
Sbjct: 489 ASICGSTLALMDAGVPIKAPVAGISCGLITD 519
>gi|357495779|ref|XP_003618178.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355493193|gb|AES74396.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 1106
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVV--ASMYGPVEAKIQKTIIDKASVEVIFR- 57
+D +R L + +S+ GS F +G+T V+ ++ P +A+ +++ +S +
Sbjct: 495 LDEVRPLYCEAGCISKLRGSADFFRGETQVLCTVTLGAPKDAQHLDSLVGPSSKRFMLHY 554
Query: 58 --PKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
P + V R +E + E ALL +L P T+ + + GS
Sbjct: 555 SFPPYCIGEVGKRGGLNRREVGHGALAEKALLAVLPPEVVFPYTVRVNSEVMASDGSTSM 614
Query: 108 CCINAACLALINSGISMRYILAAVS 132
+ A +AL+N+GI +R +A +S
Sbjct: 615 ASVCGASMALMNAGIPIREHVAGIS 639
>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase [Thermoanaerobacter tengcongensis MB4]
gi|81481549|sp|Q8RA43.1|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Thermoanaerobacter tengcongensis MB4]
Length = 707
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 30/165 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I + I D+ +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGIGDEEFKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSC-IINDKNEVIL 143
GS + + LAL+++G+ ++ +A ++ +I +++EV++
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLI 475
>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
Length = 451
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT--VVVASMYGPVEAKIQKTIIDK 49
+D +R + + N+L R+ GS +F++GQT + VA+ G ++A++ + DK
Sbjct: 348 LDEIRPISIETNLLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDK 398
>gi|71032567|ref|XP_765925.1| exosome complex exonuclease Rrp41 [Theileria parva strain Muguga]
gi|68352882|gb|EAN33642.1| exosome complex exonuclease rrp41, putative [Theileria parva]
Length = 259
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 74 IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR-------- 125
+KST + +++ + +S+ + I ++ GS+ S +NA LALI++G+S++
Sbjct: 134 VKSTYQEMIISHCYKTSSISIFINVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTV 193
Query: 126 -YILAAVSCIINDKNEVILDANQIQSN 151
Y+ + V I+ +LD NQ++ N
Sbjct: 194 SYLDSTVLTGIHLFYYSLLDPNQMEIN 220
>gi|56753997|gb|AAW25189.1| SJCHGC03792 protein [Schistosoma japonicum]
Length = 238
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTC 78
GS + V S+YGP EAKI + + +A V+V P +G ++ E +
Sbjct: 15 GSATWDDSGHHVTFSIYGPDEAKINEELTHRAFVDVKVTPCAGQRTSKESELEVYLNHLV 74
Query: 79 ESALLTMLHPR---TSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCII 135
E + PR T + I + +S INA LAL+ SG+ +R + AV C I
Sbjct: 75 ERLIDVKEFPRSKFTGRLFIIAGGTNHPKTVSSAINAISLALLLSGLPLRATITAVCCAI 134
Query: 136 NDKNEVI 142
KN +I
Sbjct: 135 --KNTLI 139
>gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
53516]
gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
53516]
Length = 714
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +I++ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKKDDNVVIL 476
>gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
29328]
gi|226702653|sp|B0S1D9.1|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
29328]
Length = 714
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +I++ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVIL 476
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI--IDKASVEVIFRP------KSG 61
++ ++S + GS G T + S++ P E Q + + + F P K+
Sbjct: 11 KVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASHLRKTP 70
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
S + R + + S A+ L P + + L+D GS+L+ I AA LAL ++
Sbjct: 71 QSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGLALADAC 130
Query: 122 ISMRYILAAVSC-IINDK 138
I M I+ A + I+ D+
Sbjct: 131 IPMFDIVTATTAGILGDR 148
>gi|365986014|ref|XP_003669839.1| hypothetical protein NDAI_0D02820 [Naumovozyma dairenensis CBS 421]
gi|343768608|emb|CCD24596.1| hypothetical protein NDAI_0D02820 [Naumovozyma dairenensis CBS 421]
Length = 234
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D + L + +I+ +GS + + +V S+YGP I+ + + ++ + + K+G
Sbjct: 40 DGIPSLSIKSDIIENCNGSTLIESDEFSIVTSVYGP--KSIRGSFTSQGTISI--QLKNG 95
Query: 62 L--SFVQDRLKE--SVIKSTCESALLTMLHPRTS----VILTIQELQDQGSLLSCCINAA 113
+ + + LKE S + S + +P++ V L I + D L+ + +
Sbjct: 96 IVEKYQTNELKEVASWLVGIFNSVVNLEKYPKSGIDIFVNLVIDKTNDISKLIPFIVMST 155
Query: 114 CLALINSGISM 124
CLAL++SGI M
Sbjct: 156 CLALVDSGIEM 166
>gi|417926250|ref|ZP_12569656.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
SY403409CC001050417]
gi|341589890|gb|EGS33151.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
SY403409CC001050417]
Length = 714
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +I++ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVIL 476
>gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
BVS033A4]
gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
BVS033A4]
Length = 714
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +I++ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVIL 476
>gi|395851542|ref|XP_003798312.1| PREDICTED: IQ and AAA domain-containing protein 1 [Otolemur
garnettii]
Length = 834
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 71 ESVIKSTCESALLTMLHPR----TSVILTIQELQDQGSLLSCCINAACLALINSGISMRY 126
++ I+S C +L PR + +L Q ++ G +LS +N +CLA I G + R+
Sbjct: 687 DAEIQSFCRVYQKIILVPRPDYASRYVLWKQIIERNGGILSNTLNISCLAKITDGFTQRH 746
Query: 127 ILAAVSCIINDK 138
I+ V ++ D+
Sbjct: 747 IVEVVKEVLTDR 758
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 19 GSVIFSQGQTVVVASMYGPVEAKIQKTIID------KASVEVIFRPKSGLSFVQDRLKES 72
GS G T V+ S++GP E+K D S P G + +
Sbjct: 56 GSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQG-SDHKDYSA 114
Query: 73 VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
++ A++ P+T+V + L+ GS L I+ A LAL ++GI M ++A+VS
Sbjct: 115 MLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVS 174
Query: 133 CIINDKNEVI 142
KN VI
Sbjct: 175 VSCLSKNLVI 184
>gi|373106279|ref|ZP_09520582.1| polyribonucleotide nucleotidyltransferase [Stomatobaculum longum]
gi|371652654|gb|EHO18062.1| polyribonucleotide nucleotidyltransferase [Stomatobaculum longum]
Length = 704
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF-RPKSGL 62
+R L +++++L R GS +F++GQT ++ +++QK ID VEV R
Sbjct: 324 IRPLAAEIDLLPRVHGSAMFTRGQTQILDVCTLAPLSEVQK--IDGLDVEVKNKRYMHQY 381
Query: 63 SFVQDRLKESVIK-----------STCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
+F + E+ + + E ALL M+ I + ++ GS
Sbjct: 382 NFPSYSVGETRVSRGPGRREIGHGALAERALLPMIPSEEEFPYAIRCVSETMESNGSTSQ 441
Query: 108 CCINAACLALINSGISMRYILAAVSC--IINDKNEVILDANQIQ 149
+ A+ LAL+ +G+ + +A +SC + D ++ L IQ
Sbjct: 442 ASVCASSLALMAAGVPIARPVAGISCGLVTGDTDDDYLVLTDIQ 485
>gi|337288705|ref|YP_004628177.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobacterium
sp. OPB45]
gi|334902443|gb|AEH23249.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobacterium
geofontis OPF15]
Length = 702
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMY--GPVEAKIQKTIIDKASVEVI---- 55
D +R ++ +++ R GS IF++GQT V A++ P EA++ ++I + + +
Sbjct: 318 DEIRPIEIKIHPFERPHGSAIFTRGQTQVFATVTLGSPEEAQMVESIYEGETFKRFMLHY 377
Query: 56 ----FRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTS----VILTIQELQDQGSLLS 107
F + R +E + E AL ++ P + + + L+ GS
Sbjct: 378 NFPPFSTGEARPWGPPRRREIGHGALAERALEPLIPPEDTFPYIIRIVANVLESNGSTSM 437
Query: 108 CCINAACLALINSGISMRYILAAVS 132
+ A LAL ++G+ + +A ++
Sbjct: 438 ATVCAGSLALFDAGVPVSKHVAGIA 462
>gi|342216522|ref|ZP_08709169.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341587412|gb|EGS30812.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 637
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKI 42
MD +R L +++ IL R+ GS +F +GQT V VA++ G E +I
Sbjct: 317 MDEIRPLSAEVGILPRTHGSGLFKRGQTQVLSVATLAGLSEVQI 360
>gi|240282170|gb|EER45673.1| exosome complex subunit Rrp46 [Ajellomyces capsulatus H143]
gi|325088310|gb|EGC41620.1| exosome complex subunit RRP46 [Ajellomyces capsulatus H88]
Length = 253
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 7 LKSQLNILSRSDGSVIF-SQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPKSGLSF 64
L + L L DGS + S ++ S+ GP+E+ + + ++A++E++ +P G+S
Sbjct: 4 LDASLTPLRFPDGSASYTSPTGDQILGSVNGPIESGRRDSQRPEEATIEILVKPGVGVSG 63
Query: 65 VQDRLKESVIKSTCESALL--TMLHPRTSVILTIQELQDQ 102
V +R E +++ +L PR +++T+ L+++
Sbjct: 64 VGERYVEGILRGVLSRVILLREKAMPRAGIVITLVVLKNK 103
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKA--SVEVIFRP-KS 60
+R + Q +++ + GS G+T V+ ++YGP KA +VE+ F P S
Sbjct: 44 VRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPTPPSAPFNPKARLNVEIKFAPFAS 103
Query: 61 GL-SFVQDRLKE-----SVIKSTCESALLTMLHPRTSVILTIQELQDQG--SLLSCCINA 112
G+ +V + E +V++ + +LL P++ + L + L+ G + LS + A
Sbjct: 104 GVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLESDGWDNDLSIGVTA 163
Query: 113 ACLALINSGISMRYILAAVSCII---NDKNEVILDANQIQSN 151
A +AL +GI MR ++ A S + + ILD + ++
Sbjct: 164 ASVALAEAGIPMRGLVTACSATLLPTPNSKSAILDPTRDEAR 205
>gi|308157951|gb|EFO60878.1| 3' exoribonuclease, putative [Giardia lamblia P15]
Length = 262
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMY--GPVEAKIQKTIIDKASVEVIFRPKSGL 62
RE N +S S GSV F G T ++AS+Y P + T+ +V +R S +
Sbjct: 16 REPTILFNCISTSTGSVRFRLGGTDLIASVYLDTPQNTPFKLTVEALPTVSDAYRLTSNI 75
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
+ + S++ S ++ L + R+ ++L++ L D GS ++ NA L L+ G+
Sbjct: 76 RVLVGSVLSSIVLSEQKTCSLCVSG-RSLLVLSLLILSDDGSTVASACNATLLMLMAIGV 134
Query: 123 SMRYILAAVS 132
++ Y+ AVS
Sbjct: 135 TLPYVPCAVS 144
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQK----------------TIIDKASVEVIFRPKS 60
SDGS QG T ++ + GP ++ K I + S ++ R +
Sbjct: 35 SDGSASIKQGLTHIIVLVKGPSDSTYVKQANQTNFASVLINCDINISNNLSTDI--RRGT 92
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS 120
L + + +IK +S ++ L R+ + +++ L G L S IN LALI++
Sbjct: 93 KLDIITAEI-SLLIKKVFKSIIIVPLSKRSQITFSVEILDCDGCLKSTIINCCTLALIDA 151
Query: 121 GISMRYILAAVSCIINDKNEVILDANQIQSN 151
G++++ ++ + S DK V+ D Q+++N
Sbjct: 152 GVAVKSLVFSSSVCYLDK-IVLADPTQLETN 181
>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
gi|156865604|gb|EDO59035.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. L2-50]
Length = 700
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF-RPK 59
++ +R L ++++I+ R GS +F++GQT + + ++IQK ID V+ R
Sbjct: 321 INQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTLAPLSEIQK--IDGLDENVVSKRYM 378
Query: 60 SGLSFVQDRLKESVIK-----------STCESALLTMLHPRTSVILTI----QELQDQGS 104
+F + E+ + + E ALL +L I + + GS
Sbjct: 379 HHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVLPSVEEFPYAIRAVSETFESNGS 438
Query: 105 LLSCCINAACLALINSGISMRYILAAVSC 133
A+C++L+ +G+ ++ ++A +SC
Sbjct: 439 TSMASTCASCMSLMAAGVPLKSMVAGISC 467
>gi|121710932|ref|XP_001273082.1| exosome complex subunit Rrp46, putative [Aspergillus clavatus
NRRL 1]
gi|119401232|gb|EAW11656.1| exosome complex subunit Rrp46, putative [Aspergillus clavatus
NRRL 1]
Length = 249
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 9 SQLNILSRSDGSVIF---SQGQTVVVASMYGPVEAKIQKTII--DKASVEVIFRPKSGLS 63
+ L L+R+DGS + + G +++ S+ P+E ++ + ++A+VEV +P +
Sbjct: 6 ASLTPLARADGSASYQCPTTGYSIL-GSVNAPIELPGRRDALKPEEATVEVFVKPGTTPG 64
Query: 64 FVQDRLKESVIKSTCESALLTM--LHPRTSVILTI 96
V +R E +IKS +L +PR V++T+
Sbjct: 65 GVGERYVEGIIKSMLGRIILGREKGYPRRGVVVTL 99
>gi|336453801|ref|YP_004608267.1| polyribonucleotide nucleotidyltransferase [Helicobacter
bizzozeronii CIII-1]
gi|335333828|emb|CCB80555.1| polyribonucleotide nucleotidyltransferase [Helicobacter
bizzozeronii CIII-1]
Length = 694
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT--VVVASMYGPVEAKIQKTIIDKA------SV 52
+D++R + + NIL GS +F++G T +V ++ +AKI++ + DKA
Sbjct: 320 LDTIRPISIETNILPHCHGSALFTRGHTQALVTCTLGLESDAKIREHLDDKALTKEKFMF 379
Query: 53 EVIFRPKS-------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE-LQDQGS 104
F P S G ++ ++ K ES+++ + VI + E L+ GS
Sbjct: 380 HYNFPPFSVGEATPLGAPSRRELGHGNLAKRALESSIMD----KNQVIRLVSEILESNGS 435
Query: 105 LLSCCINAACLALINSGISMRYILAAVS---CIINDKNEVILD 144
+ LAL SG+ + ++A V+ + DK+ ++ D
Sbjct: 436 SSMASVCGGSLALCASGVGVHALVAGVAMGLVLEGDKHVILSD 478
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 87 HPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+P+T++ + I L D G++L I AA +AL ++G+ M ++++ S N ++D
Sbjct: 87 YPKTAIDIYILVLNDDGNVLVASITAATMALADAGVEMFDMVSSCSVSCTKDNRTLIDPT 146
Query: 147 QIQ 149
++
Sbjct: 147 TLE 149
>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase [Bacillus clausii KSM-K16]
gi|81366005|sp|Q5WFU8.1|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
KSM-K16]
Length = 710
Score = 35.8 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT-------------VVVASMYGPVEAK------ 41
+D +R L SQ+ +L R+ GS +F++GQT V V G E K
Sbjct: 320 VDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGLGIEETKRFMHHY 379
Query: 42 --IQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
Q ++ + + R + G + +R E VI S E P T + L + L
Sbjct: 380 NFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQE-------FPYT-IRLVSEVL 431
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVS 132
+ GS I A+ LA++++G+ ++ +A ++
Sbjct: 432 ESNGSTSQASICASTLAMMDAGVPIKAPVAGIA 464
>gi|381179449|ref|ZP_09888301.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
gi|380768623|gb|EIC02610.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
Length = 700
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQG--QTVVVASMYGPVEAKIQKTIIDKASVEVI---- 55
D +R + ++N+L R GS +F++G Q++ V ++ ++A+I I + S I
Sbjct: 322 DEIRPITCEVNVLPRPHGSALFTRGETQSLAVCTLGTAMDAQILDDIDGERSENFILHYN 381
Query: 56 FRPKS--GLSFVQDRLKESVIKSTCESALLTML-----HPRT-SVILTIQELQDQGSLLS 107
F P S + + +E + +L M+ P T V+ I E S S
Sbjct: 382 FPPYSVGEVGRLTTGRREIGHGNLARRSLAPMIPSMEEFPYTVRVVSEIMESNGSSSQAS 441
Query: 108 CCINAACLALINSGISMRYILAAVS 132
C CLAL+ +G+ M+ ++A ++
Sbjct: 442 TC--GGCLALLAAGVPMKKMVAGIA 464
>gi|374288247|ref|YP_005035332.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
marinus SJ]
gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
marinus SJ]
Length = 709
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-----YG-PVEAKIQKTIIDKASVEV 54
M +RE++++ N+L GS +F++G+T V+A++ +G +E I+ T K +
Sbjct: 329 MTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQKFYLHY 388
Query: 55 IFRPKS-----GLSFVQDR------LKESVIKSTCESALLTMLHPRTSVILTIQELQDQG 103
F P S G+ V R L E +K+ S T V+ + E
Sbjct: 389 NFPPFSVGEARGVRGVGRRELGHGNLAERAVKAVMPSE--EEFAYTTRVVCEVMESNGSS 446
Query: 104 SLLSCCINAACLALINSGISMRYILAAVS 132
S+ S C +A +AL+++G+ + +A ++
Sbjct: 447 SMGSVC--SASMALMDAGVPISNPVAGIA 473
>gi|82595244|ref|XP_725768.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23480893|gb|EAA17333.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 367
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 21 VIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCE 79
+I + ++V ++ GP + T I+ + + + G ++++ E ++ E
Sbjct: 82 IIGNGSSSIVCTTLIGPTANNLMFTKGIELTQLNIRIKNMQGYRTEREKIFEEIVAKNFE 141
Query: 80 SALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK 138
+ L+ + +Q LQ+ +LS IN+ L I + ISM Y++ +V+ I DK
Sbjct: 142 QVIDHSLYKFQQFNIKVQILQEASYILSSIINSITLNFICNNISMNYVINSVNIGIIDK 200
>gi|68076895|ref|XP_680367.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501289|emb|CAI04223.1| conserved hypothetical protein [Plasmodium berghei]
Length = 341
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 21 VIFSQGQT-VVVASMYGPVEAKIQKTI-IDKASVEVIFRPKSGLSFVQDRLKESVIKSTC 78
VI G + +V ++ GP I + I+ + + + G ++++ E ++
Sbjct: 81 VIIGNGSSSIVCTTLIGPTANNIMFSKGIEFTQLNIRIKNMQGYRNEREKIFEEIVVKNF 140
Query: 79 ESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK 138
E + L+ + +Q LQ+ +LS IN+ L I + ISM Y++ +V+ I DK
Sbjct: 141 EQVIDHGLYKFQQFNIKVQILQETSYILSSIINSITLNFICNNISMNYVINSVNIGIIDK 200
Query: 139 NEVI 142
+ I
Sbjct: 201 EKYI 204
>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
Length = 700
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
43879]
gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
43879]
Length = 734
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQT--VVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
+RE+ + N+L ++ GS F++GQT +V ++ +A+ Q+ I+ + ++IF
Sbjct: 362 IREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKSKIIFHYNFP 421
Query: 58 PKS-------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
P S G S ++ ++ ES + H ++ L + LQ GS +
Sbjct: 422 PFSVGEAYPIGASSRRELGHGNLALKAIESNVANTPH---TIRLVSEILQSNGSSSMASV 478
Query: 111 NAACLALINSGISMRYILAAVS 132
A LAL+ + I M ++A ++
Sbjct: 479 CGASLALLGADIKMHNMVAGIA 500
>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392940960|ref|ZP_10306604.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392292710|gb|EIW01154.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
Length = 700
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|261335123|emb|CBH18117.1| exosome-associated protein 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 232
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR---- 57
D +R LN+L +S S G T VV +++ P + I + + V R
Sbjct: 16 DEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHP-QQLIDEYRGSRGRVACTVRRSSR 74
Query: 58 -PKSGLSFVQDRLKES----VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
K GL+F D E ++ E A++ P+ V + ++ L + G L
Sbjct: 75 AQKHGLAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILAEDGGLWDAIATG 134
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
C AL + G M +A + ++ D + + N
Sbjct: 135 VCAALASGGFEMYDTFSACGAALLPDGSIVTDPSATEWN 173
>gi|443707474|gb|ELU03042.1| hypothetical protein CAPTEDRAFT_117513 [Capitella teleta]
Length = 124
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV------EVI 55
+ LR ++ ++ + S++DGS QG T V+A+++G E +I+ S +
Sbjct: 23 NELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLHEPATSSSILAFPSYISHQYSMAV 82
Query: 56 FRPKSGLSFVQDRLKESV--IKSTCESALLTMLHPRTSV 92
F +G + +L E + +K T E+++LT L PR+ +
Sbjct: 83 F--SAGDVGGRKKLIEMMLHLKQTIEASILTHLCPRSQI 119
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
++ R + + +LS++ GS G T V+ ++GP +++++ D + R S
Sbjct: 19 LEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNCEVRLTS 78
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLH--------PRTSVILTIQELQDQGSLLSCCINA 112
S + ++ ++S+ L L P+ ++ L+ GS L+ I A
Sbjct: 79 FASHKLAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEAGGSDLAVLITA 138
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A +AL ++G+ + ++ AV + + ++LD + +S
Sbjct: 139 ASVALADAGVELYDLVPAVQ-VSKQRGLLLLDPSLEESG 176
>gi|225559237|gb|EEH07520.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 253
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 7 LKSQLNILSRSDGSVIF-SQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPKSGLSF 64
L + L L DGS + S ++ S+ GP+E+ + + ++A++E++ +P G+S
Sbjct: 4 LDASLTPLRFPDGSASYTSPTGDQILGSVNGPIESGRRDSQRPEEATIEILVKPGVGVSG 63
Query: 65 VQDRLKESVIKSTCESALLTMLH--PRTSVILTIQELQDQ 102
V +R E +++ +L PR +++T+ L+++
Sbjct: 64 VGERYVEGILRGVLSRVILLREKSMPRAGIVITLVVLKNK 103
>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
X514]
gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
gi|257096713|sp|B0K1D0.1|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X514]
gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
Length = 700
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|257096712|sp|B0K9P4.1|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 700
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|401399709|ref|XP_003880615.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
Length = 214
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
+R + Q + L+ + GS S G+T + ++YGP + D+ S+ + F+ +
Sbjct: 1 MRTMCLQTHSLAGATGSAFVSVGKTKLNCAVYGP-RPNTKAASQDRGSINLEFKYAPFAT 59
Query: 64 FVQDRLKESVIKSTCESA-LLTMLHP------------RTSVILTIQELQDQGSLLSCCI 110
+ E +SA L+T+LH ++++ +++ L+D G ++S +
Sbjct: 60 TSKGACNER------DSAHLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAAL 113
Query: 111 NAACLALINSGISMRYILAAVS 132
LAL ++GI M +L S
Sbjct: 114 TCIGLALADAGIEMLDVLTGAS 135
>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 700
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|222151113|ref|YP_002560267.1| polynucleotide phosphorylase/polyadenylase [Macrococcus
caseolyticus JCSC5402]
gi|254782726|sp|B9EBG0.1|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
JCSC5402]
Length = 703
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R L S++ IL R GS +F++GQT ++ + A + IID VE R
Sbjct: 322 DEIRPLDSEVGILPRVHGSGLFTRGQTQALS--VATLGALGEHQIIDGLGVEEEKRYMHH 379
Query: 62 LSFVQDRLKES-VIKSTC----------ESALLTMLHPRTSVILTI----QELQDQGSLL 106
+F + E+ I++ E ALL ++ TI + L+ GS
Sbjct: 380 YNFPNFSVGETGPIRAPGRREIGHGALGERALLQVIPDEKEFPYTIRVVSEVLESNGSSS 439
Query: 107 SCCINAACLALINSGISMRYILA--AVSCIINDKNEVILDANQ 147
I + LAL+++G+ ++ +A A+ + D+N IL Q
Sbjct: 440 QASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDIQ 482
>gi|115433292|ref|XP_001216783.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189635|gb|EAU31335.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 248
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 9 SQLNILSRSDGSVIFSQGQTV--VVASMYGPVEAKIQKTII--DKASVEVIFRPKSGLSF 64
+ L LSR+DGS + T ++ S+ PVE ++ + ++A+VEV +P +
Sbjct: 6 ASLTPLSRADGSASYQCPATGANILGSVNAPVELPGRRDALKPEEATVEVFVKPGTAPGG 65
Query: 65 VQDRLKESVIKSTCESALLTM--LHPRTSVILTI 96
V +R E +IK+ +L + R V+LT+
Sbjct: 66 VGERYVEGIIKTMLGRVILGREKGYARRGVVLTL 99
>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
DSM 5159]
gi|257096714|sp|B9KYR9.1|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
DSM 5159]
Length = 790
Score = 35.4 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +RE+ Q+ +L R GS +F++GQT V+ + K ++ +D +E R
Sbjct: 332 DEIREIWIQVGLLPRPHGSALFTRGQTQVLTVC--TLGTKEEEQFLDSLGIEETKRYMHH 389
Query: 62 LSFVQ------DRLKESVIK-----STCESALLTMLHPRTSVILTI----QELQDQGSLL 106
+F RL+ + + E ALL +L T+ + L GS
Sbjct: 390 YNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAVLPSEDEFPYTMRLVSEVLSSNGSTS 449
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ + LAL+++G+ +R +A V+
Sbjct: 450 MASVCGSSLALMDAGVPIRKPVAGVA 475
>gi|345017696|ref|YP_004820049.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033039|gb|AEM78765.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 700
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALGERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>gi|217967533|ref|YP_002353039.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
gi|254782720|sp|B8E2S5.1|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
Length = 693
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQKTIIDKASVEVI---- 55
++ LR + ++ +LSR GS +F +G+T V++ + G E +I +++I+ I
Sbjct: 321 LNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKRYIHHYN 380
Query: 56 FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLSC 108
F P S + +E + E ALL ++ TI + L GS
Sbjct: 381 FPPFSVGEAKPLRGPKRREIGHGALAERALLPLIPKEEEFPYTIRVVSEVLSSNGSTSMA 440
Query: 109 CINAACLALINSGISMRYILAAVSCII---NDKNEVILDANQIQ 149
+ + L+L+++G+ ++ +A V+ + +K EV+ D ++
Sbjct: 441 SVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLTDIQGLE 484
>gi|427392402|ref|ZP_18886407.1| polyribonucleotide nucleotidyltransferase [Alloiococcus otitis ATCC
51267]
gi|425731363|gb|EKU94181.1| polyribonucleotide nucleotidyltransferase [Alloiococcus otitis ATCC
51267]
Length = 706
Score = 35.4 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 35/156 (22%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQKTIIDKASVE------ 53
+D +R+L+S++ + +R GS +F++GQT ++++ GP+ + +ID S E
Sbjct: 326 VDEIRDLESEVGLFARVHGSGLFTRGQTQALSALTLGPLN---EHQVIDGLSSEEEKRFI 382
Query: 54 -----------VIFRPKS------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI 96
RPKS G + +R E +I S P T + L
Sbjct: 383 HHYNFPSYSVGETGRPKSPGRREIGHGALGERALEPIIPSQEN-------FPYT-IRLVA 434
Query: 97 QELQDQGSLLSCCINAACLALINSGISMRYILAAVS 132
+ L+ GS I A LAL++ G+ ++ + ++
Sbjct: 435 EVLESNGSSSQASICAGSLALMDGGVPIKAPVGGIA 470
>gi|367050796|ref|XP_003655777.1| hypothetical protein THITE_2119854 [Thielavia terrestris NRRL 8126]
gi|347003041|gb|AEO69441.1| hypothetical protein THITE_2119854 [Thielavia terrestris NRRL 8126]
Length = 3125
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTI------IDKASVEV 54
+D LR+LK+QL++L R + S++ + + Y E K+ +TI +D++ +V
Sbjct: 1638 LDLLRQLKNQLDMLVRDEPSLVLIRDAVQNFIAFYSRYERKVGETIKAGRAPLDRSMKDV 1697
Query: 55 IFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVI-LTIQELQDQG 103
+ K + D L+ES KS L ++ +V+ +Q L DQG
Sbjct: 1698 LLMSKWRDKNI-DALRESARKS--HQKLFKLVRKFRAVLEQPVQTLMDQG 1744
>gi|56757493|gb|AAW26913.1| SJCHGC05910 protein [Schistosoma japonicum]
Length = 240
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFRPKSGLSFVQDRLKESVI 74
+DGS G+ V S+ GP E + ++ K + + + PK + ++ +L ++
Sbjct: 44 TDGSAYLEMGEIKVACSVNGPTEMRQDSQLVTMLKFAPFLSWLPKDIQASMERKLSR-LL 102
Query: 75 KSTCESALLTMLHPR--TSVILTIQELQDQ------GSLLSCCINAACLALINSGISMRY 126
+ E A++ PR ++ I ++ G L+ I A LAL+NSG+ M
Sbjct: 103 LTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCLAAAITCAGLALLNSGVQMYD 162
Query: 127 ILAAVSCIIND 137
+L ++ + D
Sbjct: 163 LLVGLNLDLAD 173
>gi|226485759|emb|CAX75299.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485761|emb|CAX75300.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFRPKSGLSFVQDRLKESVI 74
+DGS G+ V S+ GP E + ++ K + + + PK + ++ +L ++
Sbjct: 44 TDGSAYLEMGEIKVACSVNGPTEMRQDSQLVTMLKFAPFLSWLPKDIQASMERKLSR-LL 102
Query: 75 KSTCESALLTMLHPR--TSVILTIQELQDQ------GSLLSCCINAACLALINSGISMRY 126
+ E A++ PR ++ I ++ G L+ I A LAL+NSG+ M
Sbjct: 103 LTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCLAAAITCAGLALLNSGVQMYD 162
Query: 127 ILAAVSCIIND 137
+L ++ + D
Sbjct: 163 LLVGLNLDLAD 173
>gi|226485757|emb|CAX75298.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485763|emb|CAX75301.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 17 SDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFRPKSGLSFVQDRLKESVI 74
+DGS G+ V S+ GP E + ++ K + + + PK + ++ +L ++
Sbjct: 44 TDGSAYLEMGEIKVACSVNGPTEMRQDSQLVTMLKFAPFLSWLPKDIQASMERKLSRLLL 103
Query: 75 KSTCESALLTMLHPR--TSVILTIQELQDQ------GSLLSCCINAACLALINSGISMRY 126
+ E A++ PR ++ I ++ G L+ I A LAL+NSG+ M
Sbjct: 104 -TAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCLAAAITCAGLALLNSGVQMYD 162
Query: 127 ILAAVSCIIND 137
+L ++ + D
Sbjct: 163 LLVGLNLDLAD 173
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,852,202,293
Number of Sequences: 23463169
Number of extensions: 59078917
Number of successful extensions: 157421
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 155903
Number of HSP's gapped (non-prelim): 1129
length of query: 151
length of database: 8,064,228,071
effective HSP length: 114
effective length of query: 37
effective length of database: 9,684,394,101
effective search space: 358322581737
effective search space used: 358322581737
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)