BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15057
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVACALDSDGTLVLDPTSKQ 173
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E ++++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVTCALDSDGNLVLDPTTKQ 173
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + + GSLL C INA C AL+ +G
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + EVILD N+ +
Sbjct: 132 IPLKHLAVAIGCGVLEDGEVILDTNKAE 159
>sp|O42894|RRP46_SCHPO Exosome complex component rrp46 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp46 PE=3 SV=1
Length = 226
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
+++ ILSRSDGS + QG V+ + GP++ KI+ ++KA+VEV+ +P SG++ ++
Sbjct: 2 NRIGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEK 61
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-LLSCCINAACLALINSGISMRYI 127
+ S I E A+ +PRT + ++IQ +++ G+ L+ IN A LAL+++GIS++YI
Sbjct: 62 MISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYI 121
Query: 128 LAAVSCIINDK 138
A++C +K
Sbjct: 122 PCAINCHWKNK 132
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD 166
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE--AKIQKTIIDKASVEVIF----- 56
LR++++++ + +++DGS QG T +A +YGP E + + D+A V +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 57 -------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
RP + L+ ++ T E+A+LT LHPR+ + + +Q LQ G + C
Sbjct: 82 STGERKRRPHGDRKSCEMGLQ---LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAAC 138
Query: 110 INAACLALINSGISMRYILAAVSCIIND 137
+NAA LA++++GI MR + A S D
Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVD 166
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRLKESVIKS---------TCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R KS T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIIND 137
A LA++++GI MR + A S D
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD 166
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D LR +K +L +L +DGS IF G T +A++YGP E + ++ D+A + V +
Sbjct: 26 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYH--- 82
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ESA+L L PRT++ + + LQ D GS L
Sbjct: 83 MTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRL-V 141
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
+ AA LAL ++GI MR ++A V+ D +ILD N+ +
Sbjct: 142 SLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETE 181
>sp|P53256|RRP46_YEAST Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2
Length = 223
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQEL---QDQGSL----LSCCINAACLALIN 119
+++ E +++ + +PR +T Q L +D+ LSCCINAA LAL++
Sbjct: 63 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVD 122
Query: 120 SGISMRYILAAVS-CIINDKNEVILDANQIQ 149
+GI++ + A++ II D +++I+D Q
Sbjct: 123 AGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 153
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFR--P 58
+ LR ++ ++ +LS +DGS + G T V+A++YGP EA + + D+A + + P
Sbjct: 32 EQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAP 91
Query: 59 ------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
K+ ++ VI+ E+ +++ L+PRT++ + ++ LQ G + I A
Sbjct: 92 FSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITA 151
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
A LAL ++GI+MR ++A V+ D ++LD ++I+ N
Sbjct: 152 ASLALADAGIAMRDLVAGVAVGKVD-GVLVLDIDEIEDN 189
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 18/162 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +R +K +L +L +DGS IF G T V+A++YGP E + + D+A + V +
Sbjct: 23 DEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRY---H 79
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLSC 108
F D K VI+ ES +L L PRT + + ++ LQ D G+ L
Sbjct: 80 MTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGTRL-V 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150
+ AA +AL ++GI MR ++A V+ D ++LD N+ +
Sbjct: 139 SLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLDLNEPED 179
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--SG 61
+R + ++L + ++GS G T V+ ++YGP E K K I DK ++ + SG
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSG 78
Query: 62 LSFVQ----DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
L DR + ++ ES +LT PR+ + + + +Q GS L+ C+NA
Sbjct: 79 LERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATS 138
Query: 115 LALINSGISMRYILAAVSCIINDKNEVI 142
LAL ++GI M+ I +A +C + D ++
Sbjct: 139 LALADAGIPMKGIASAATCGVVDGKPIV 166
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ V+A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E ALL + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI M+ ++AA + D E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMKDLVAACAAGKID-GEIVLDLNKEEDN 181
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L +DGS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRTS+ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VIK E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA C + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAA--CAAGKIEGEIVLDLNKEEDN 181
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASV----------- 52
+R + ++L + ++GS G T V+ ++YGP E+K K + D+ ++
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSG 78
Query: 53 -EVIFRPKSGLSFVQ-DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
E RP+ + RL E ES +LT PR+ + + + +Q GS L+ C+
Sbjct: 79 LERKNRPRGDRKSTEISRLLEKAF----ESVILTESFPRSQIDIFCEVIQGDGSNLAACV 134
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVI 142
NA LAL ++GI M+ I +A +C I + ++
Sbjct: 135 NATSLALADAGIPMKGIASAATCGIVETKPIV 166
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
D LR +K + ++L R+DGS G+ V+A+++GP E + + D + + +R
Sbjct: 23 FDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVH-PRHLQDPSKAIIRYRYNM 81
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V++R + V K E+ ++ L PR+++ + ++ LQ + C+
Sbjct: 82 APFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACL 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
NAA +AL+++G+ M+ ++ +V+ D +++LD + + N
Sbjct: 142 NAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDN 181
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE++ + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGIYMRDLVIGVSVGLVD-GTVVLDLNGLE 177
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE++ Q+ +S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++GI MR ++ VS + D V+LD N ++ N
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDN 179
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE---AKIQKTIIDKASVEVIFR-- 57
LR +K ++ +L ++GS G+ ++A++YGP E +Q+ D+A + V +
Sbjct: 25 ELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRP--DRAILRVRYNMA 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V++R K VI+ E AL+ + PRT++ + I+ LQ
Sbjct: 83 PFS----VEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRV 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
I AA LAL ++GI MR ++AA S + E++LD N+ + N
Sbjct: 139 AGITAASLALADAGIPMRDLVAACSA-GKIEGEIVLDLNKEEDN 181
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 18/160 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPK 59
+D LR +K +L +L +DGS IF G T V+A++YGP E + + DKAS+ V +
Sbjct: 22 LDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLRVRY--- 78
Query: 60 SGLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQ-DQGSLLS 107
F D K VI+ ES +L L PRT + + ++ LQ D G+ L
Sbjct: 79 HMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGTRL- 137
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQ 147
+ AA +AL ++GI MR ++A V+ D ++LD N+
Sbjct: 138 VALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNE 176
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVE-AKIQKTIIDKASVEVIFRPKS 60
D +R LK Q +L R+DGS G +VA++YGP E K D+A V FR
Sbjct: 22 DEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR--FRYNM 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
V +R + + K E A+ T +PRT++ + ++ LQ I
Sbjct: 80 APFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGI 139
Query: 111 NAACLALINSGISMRYILAAVSCIIND-KNEVILD 144
+AA +AL ++GI MR ++AA C + +V+LD
Sbjct: 140 SAASVALADAGIEMRDLVAA--CAAGKVEGKVVLD 172
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
LR++ ++ +L +DGS G+ ++A++YGP E I + + V+ +
Sbjct: 25 ELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPRE--IHPKHLQRPDTAVLRVRYNMA 82
Query: 63 SF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
F V++R K VI+ E AL+ + PRT V + I+ LQ I
Sbjct: 83 PFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGIT 142
Query: 112 AACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
AA LAL ++G+ MR ++AA + D E++LD N+ + N
Sbjct: 143 AASLALADAGVPMRDLVAACAAGKID-GEIVLDLNKDEDN 181
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTII-DKASVEVIFRPKS 60
+ LR ++ Q+ IL +DGS + G+T V+A++YGP E + ++ D+A++ V +
Sbjct: 24 EDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRY---H 80
Query: 61 GLSFVQDRLKES-----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
F D K V++ E +L PRT + + ++ LQ G +
Sbjct: 81 MAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAA 140
Query: 110 INAACLALINSGISMRYILAAVSC 133
+ AA LAL ++GI MR ++ V+
Sbjct: 141 VTAASLALADAGIPMRALVGGVAV 164
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+ + I+S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + +++ E A++ +PR+ + + I+ LQ GS +
Sbjct: 80 PFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++G+ MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGVYMRDLVIGVSVGLVD-GAVVLDLNGLE 177
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+K + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + +++ E A++ +PR+ + + ++ LQ GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGSTRVASL 139
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
AA LAL ++GI MR ++ VS + D V+LD N ++
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLE 177
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFRPKS 60
D +RE+K + ++S +DGS + S G T VA++YGP E + ++ D+ + V + +
Sbjct: 21 DQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYH-MA 79
Query: 61 GLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +R + V++ E A+L +PR+ + + I+ +Q GS +
Sbjct: 80 PFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASL 139
Query: 111 NAACLALINSGISMR 125
AA LAL ++GI MR
Sbjct: 140 TAASLALADAGIYMR 154
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R +K ++ +LSR+DGS G+ ++ ++GP EA +++ +A VI +
Sbjct: 24 DEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRS--QRADSAVIRYRYNM 81
Query: 62 LSF-VQDRLK----------ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
SF V+DR + V + E ++ L P+T++ + ++ LQ + I
Sbjct: 82 ASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAI 141
Query: 111 NAACLALINSGISMRYILAAVSCIINDKN-EVILDANQIQSN 151
NA+ +AL ++GI M+ ++ SC + +++LD N+ + N
Sbjct: 142 NASSIALADAGIPMKGLI--TSCAFGKVDGKIVLDLNKEEDN 181
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKA--------- 50
D LR LK + IL R+DGS G ++ ++YGP EA+I+K D+A
Sbjct: 23 FDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMA 82
Query: 51 --SVEVIFRPKSGLSFVQDRLKESVIKSTCES---ALLTMLHPRTSVILTIQELQDQGSL 105
SVE RP DR + K T E+ AL+ PR+ + + I+ L+ +G
Sbjct: 83 PFSVEERKRPGP------DRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 136
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQ 147
I AA +AL ++GI MR ++ V+C ++V+LD ++
Sbjct: 137 RCAGITAASVALADAGIPMRDMV--VACAAGKVGDQVVLDLSE 177
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPK 59
D +R + ++ I +GS G T V+ + GP E I+ K D+ V V
Sbjct: 19 WDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIA 78
Query: 60 SGLSF-VQDRLKES--------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S + V+ R K +++T E + T L+PR+ + + + LQD G++++ CI
Sbjct: 79 SFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCI 138
Query: 111 NAACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQ 149
NA LALI++GI ++ ++ + + I+ +++++LD N ++
Sbjct: 139 NATTLALIDAGIPVKDFVCCSTAGIV--ESDMLLDLNSLE 176
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKASVEV---- 54
+ LR +S +N + DGS QG ++ + GP E +++ + KA + V
Sbjct: 19 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI 78
Query: 55 -----IFRPKSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL 105
R KS S +R ++ S+++ ++ +L ++PRT + + I L+ G +
Sbjct: 79 TKFSKFERSKS--SHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGI 135
Query: 106 LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+ IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 136 MGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIF--- 56
+ LR +K + +L+R+DGS G ++ +YGP EA + + ID A V+ +
Sbjct: 24 FNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMA 83
Query: 57 ------RPKSGLSFVQDRLK---ESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
R + G DR VI S+++ PR + + I+ LQ
Sbjct: 84 AFSVDERKRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRI 139
Query: 108 CCINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
+ AA +AL ++GI MR ++ V C ++LD ++ + N
Sbjct: 140 AGLTAATVALADAGIPMRDMV--VGCTAGKVDGHIVLDLSKEEDN 182
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-IIDKASVEVIFRPK 59
+ LR +K Q +L+R+DGS G ++ +YGP EA + + ID A V+ +
Sbjct: 24 FNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVKARY--- 80
Query: 60 SGLSFVQDRLKE-----------SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ +F D K VI S+++ PR + + I+ LQ
Sbjct: 81 NMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIA 140
Query: 109 CINAACLALINSGISMRYILAAVSCIIND-KNEVILDANQIQSN 151
+ AA +AL ++G+ MR ++ V C ++LD ++ + N
Sbjct: 141 GLTAATVALADAGVPMRDMV--VGCTAGKVDGHMVLDLSKEEDN 182
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-TIIDKASVEVIFR-- 57
+D R + + L +DGS G ++ ++GP + + + D + V +
Sbjct: 23 VDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHME 82
Query: 58 PKSGLSFVQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLS 107
P S V +R + VIK E A++ PRT+V + I+ LQ G
Sbjct: 83 PFS----VGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRC 138
Query: 108 CCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146
+ AA +AL ++GI MR ++AA++ + VILD N
Sbjct: 139 AALTAASVALADAGIPMRDMVAAIAA-GKVADTVILDVN 176
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA-KIQKTIIDKASVEVIFR--P-- 58
+R + ++ ++S++ GS G T ++ S+YGP E + +T + + FR P
Sbjct: 42 VRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFS 101
Query: 59 --KSGLSFVQ---DRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
K G +++Q +R + + + + +PR+ + + + L++ GS+L+ + A
Sbjct: 102 CVKRG-AWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCA 160
Query: 114 CLALINSGISMRYIL 128
+AL ++GI M I+
Sbjct: 161 SMALADAGIEMYDIV 175
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 12 NILSRSDGSVIF--SQGQTVVVASMYGPVEAKIQ--------KTIIDKASVEVIFR-PKS 60
+LS++ GS G T V+ +++GP E + + + D R P S
Sbjct: 48 GLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWS 107
Query: 61 GLSFVQDRLKESVIK--STCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
G +++ ++ + E A+ +PR VI+ + L+D+GS L ++ A LAL
Sbjct: 108 GSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALA 167
Query: 119 NSGISMRYILAAVSCIINDKNEVILDAN 146
++GI M + E++LD +
Sbjct: 168 DAGIEMFDLALGCGLSRGPGGELLLDPD 195
>sp|Q6YQX2|PNP_ONYPE Polyribonucleotide nucleotidyltransferase OS=Onion yellows
phytoplasma (strain OY-M) GN=pnp PE=3 SV=1
Length = 715
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPV-EAKIQKTIIDKASVEVI--- 55
++ +R L+SQ+++L R+ GS +F++GQT +A++ G + E+KI + D+ + +
Sbjct: 331 LEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESKIIDGLSDEQNKRFMLHY 390
Query: 56 -FRPKS----GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE----LQDQGSLL 106
F P S G R +E + E A+ +L TI+ L+ GS
Sbjct: 391 NFPPFSVGAVGRYTAPSR-REIGHGTLAEKAISQVLPEEKDFPYTIRVVSEILESNGSSS 449
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ A+ LAL+ SG+ ++ +A +S
Sbjct: 450 QATVCASSLALMASGVPLKKAVAGMS 475
>sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial
OS=Arabidopsis thaliana GN=PNP2 PE=2 SV=1
Length = 991
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVV--ASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + + + L GS +FS+G T V+ ++ P EA+ +++ +
Sbjct: 370 VDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPKKRFMLHY 429
Query: 56 -FRP--------KSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQ 102
F P + GL+ +E + E ALL +L P + TI + +
Sbjct: 430 SFPPYCTNEVGKRGGLN-----RREVGHGTLAEKALLAVLPPEEAFPYTIRINSEVMSSD 484
Query: 103 GSLLSCCINAACLALINSGISMRYILAAVS 132
GS + +AL+++GI +R +A VS
Sbjct: 485 GSTSMASVCGGSMALMDAGIPLRAHVAGVS 514
>sp|Q8RA43|PNP_THETN Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=pnp PE=3 SV=1
Length = 707
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 30/165 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I + I D+ +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGIGDEEFKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSC-IINDKNEVIL 143
GS + + LAL+++G+ ++ +A ++ +I +++EV++
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLI 475
>sp|B0S1D9|PNP_FINM2 Polyribonucleotide nucleotidyltransferase OS=Finegoldia magna
(strain ATCC 29328) GN=pnp PE=3 SV=1
Length = 714
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +RE+ ++IL R GS +F +GQT V V ++ P +A++ +I++ +
Sbjct: 319 LDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQEDKRYMHQY 378
Query: 56 -FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLS 107
F P S +E + E ALL ++ TI + L GS
Sbjct: 379 NFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRVVSEVLSSNGSSSQ 438
Query: 108 CCINAACLALINSGISMRYILA--AVSCIINDKNEVIL 143
+ + L+L+++G+ ++ +A A+ I D N VIL
Sbjct: 439 ASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVIL 476
>sp|Q5WFU8|PNP_BACSK Polyribonucleotide nucleotidyltransferase OS=Bacillus clausii
(strain KSM-K16) GN=pnp PE=3 SV=1
Length = 710
Score = 35.8 bits (81), Expect = 0.096, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQT-------------VVVASMYGPVEAK------ 41
+D +R L SQ+ +L R+ GS +F++GQT V V G E K
Sbjct: 320 VDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGLGIEETKRFMHHY 379
Query: 42 --IQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
Q ++ + + R + G + +R E VI S E P T + L + L
Sbjct: 380 NFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQE-------FPYT-IRLVSEVL 431
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVS 132
+ GS I A+ LA++++G+ ++ +A ++
Sbjct: 432 ESNGSTSQASICASTLAMMDAGVPIKAPVAGIA 464
>sp|B0K1D0|PNP_THEPX Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter sp.
(strain X514) GN=pnp PE=3 SV=1
Length = 700
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>sp|B0K9P4|PNP_THEP3 Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=pnp PE=3
SV=1
Length = 700
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVI--- 55
+D +R + ++ +L R+ GS IF++GQT V VA++ + +I I D+ + +
Sbjct: 319 LDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEAKRYMHHY 378
Query: 56 -FRPKS---------------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQEL 99
F P S G + +R E VI S E P T + L + L
Sbjct: 379 NFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEE-------FPYT-IRLVSEVL 430
Query: 100 QDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
GS + + LAL+++G+ ++ +A V+ + + +V+ IQ
Sbjct: 431 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQ 480
>sp|B9EBG0|PNP_MACCJ Polyribonucleotide nucleotidyltransferase OS=Macrococcus
caseolyticus (strain JCSC5402) GN=pnp PE=3 SV=1
Length = 703
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +R L S++ IL R GS +F++GQT ++ + A + IID VE R
Sbjct: 322 DEIRPLDSEVGILPRVHGSGLFTRGQTQALS--VATLGALGEHQIIDGLGVEEEKRYMHH 379
Query: 62 LSFVQDRLKES-VIKSTC----------ESALLTMLHPRTSVILTI----QELQDQGSLL 106
+F + E+ I++ E ALL ++ TI + L+ GS
Sbjct: 380 YNFPNFSVGETGPIRAPGRREIGHGALGERALLQVIPDEKEFPYTIRVVSEVLESNGSSS 439
Query: 107 SCCINAACLALINSGISMRYILA--AVSCIINDKNEVILDANQ 147
I + LAL+++G+ ++ +A A+ + D+N IL Q
Sbjct: 440 QASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDIQ 482
>sp|B9KYR9|PNP_THERP Polyribonucleotide nucleotidyltransferase OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=pnp PE=3 SV=1
Length = 790
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D +RE+ Q+ +L R GS +F++GQT V+ + K ++ +D +E R
Sbjct: 332 DEIREIWIQVGLLPRPHGSALFTRGQTQVLTVC--TLGTKEEEQFLDSLGIEETKRYMHH 389
Query: 62 LSFVQ------DRLKESVIK-----STCESALLTMLHPRTSVILTI----QELQDQGSLL 106
+F RL+ + + E ALL +L T+ + L GS
Sbjct: 390 YNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAVLPSEDEFPYTMRLVSEVLSSNGSTS 449
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ + LAL+++G+ +R +A V+
Sbjct: 450 MASVCGSSLALMDAGVPIRKPVAGVA 475
>sp|B8E2S5|PNP_DICTD Polyribonucleotide nucleotidyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=pnp PE=3 SV=1
Length = 693
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQKTIIDKASVEVI---- 55
++ LR + ++ +LSR GS +F +G+T V++ + G E +I +++I+ I
Sbjct: 321 LNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKRYIHHYN 380
Query: 56 FRPKS---GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTI----QELQDQGSLLSC 108
F P S + +E + E ALL ++ TI + L GS
Sbjct: 381 FPPFSVGEAKPLRGPKRREIGHGALAERALLPLIPKEEEFPYTIRVVSEVLSSNGSTSMA 440
Query: 109 CINAACLALINSGISMRYILAAVSCII---NDKNEVILDANQIQ 149
+ + L+L+++G+ ++ +A V+ + +K EV+ D ++
Sbjct: 441 SVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLTDIQGLE 484
>sp|Q2YXP2|PNP_STAAB Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=pnp PE=3 SV=1
Length = 698
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-------------YGPVEAK------- 41
D +R+L S++ IL R+ GS +F++GQT ++ + GP E K
Sbjct: 326 DEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEKRFMHHYN 385
Query: 42 -IQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQ 100
++ + V R + G + +R + +I T + P T I++ + L+
Sbjct: 386 FPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTAD-------FPYTIRIVS-EVLE 437
Query: 101 DQGSLLSCCINAACLALINSGISMRYILAAVS 132
GS I + LAL+++G+ ++ +A ++
Sbjct: 438 SNGSSSQASICGSTLALMDAGVPIKAPVAGIA 469
>sp|Q2NJ06|PNP_AYWBP Polyribonucleotide nucleotidyltransferase OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=pnp PE=3
SV=1
Length = 715
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPV-EAKIQKTIIDKASVEVI--- 55
++ +R L+SQ+++L R+ GS +F++G+T +A++ G + E+KI + D+ + +
Sbjct: 331 LEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQNKRFMLHY 390
Query: 56 -FRPKS----GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE----LQDQGSLL 106
F P S G R +E + E A+ +L TI+ L+ GS
Sbjct: 391 NFPPFSVGAVGRYTAPSR-REIGHGTLAEKAISQVLPEEKDFPYTIRVVSEILESNGSSS 449
Query: 107 SCCINAACLALINSGISMRYILAAVS 132
+ ++ LAL+ SG+ ++ +A +S
Sbjct: 450 QATVCSSSLALMASGVPLKKAVAGIS 475
>sp|A9VT44|PNP_BACWK Polyribonucleotide nucleotidyltransferase OS=Bacillus
weihenstephanensis (strain KBAB4) GN=pnp PE=3 SV=1
Length = 717
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQT 28
D +R L S++ ILSR+ GS +F++GQT
Sbjct: 323 DEIRPLASEVGILSRTHGSGLFTRGQT 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,711,501
Number of Sequences: 539616
Number of extensions: 1450834
Number of successful extensions: 4656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 4518
Number of HSP's gapped (non-prelim): 151
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)