Query psy15057
Match_columns 151
No_of_seqs 136 out of 1013
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:20:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hkm_A OS03G0854200 protein; R 100.0 2.7E-43 9.4E-48 271.8 19.4 151 1-151 11-161 (246)
2 2nn6_D Exosome complex exonucl 100.0 5.2E-43 1.8E-47 268.9 18.7 149 3-151 29-177 (237)
3 3m7n_D Probable exosome comple 100.0 2.5E-40 8.6E-45 256.8 18.6 149 1-150 23-180 (258)
4 2wnr_B Probable exosome comple 100.0 4E-40 1.4E-44 253.2 18.4 150 1-151 23-181 (240)
5 2nn6_B Exosome complex exonucl 100.0 5.6E-40 1.9E-44 253.6 18.1 150 1-151 23-183 (249)
6 2po1_A Probable exosome comple 100.0 1.6E-39 5.5E-44 251.0 18.2 149 1-150 23-180 (249)
7 3krn_A Protein C14A4.5, confir 100.0 1.8E-43 6.2E-48 269.1 -4.1 147 2-151 3-149 (222)
8 2wp8_B Exosome complex compone 100.0 2.4E-39 8.1E-44 249.6 18.3 149 1-150 19-179 (246)
9 2je6_B RRP41, exosome complex 100.0 3.1E-39 1.1E-43 249.5 18.2 149 1-150 27-184 (250)
10 3dd6_A Ribonuclease PH; exorib 100.0 4.3E-38 1.5E-42 243.9 17.2 149 1-150 18-191 (255)
11 1udn_A Ribonuclease PH, RNAse 100.0 1.3E-37 4.4E-42 241.1 18.0 149 1-150 8-180 (255)
12 1r6l_A Ribonuclease PH; beta-a 100.0 1.3E-37 4.4E-42 238.9 17.2 149 1-150 9-181 (239)
13 2nn6_F MTR3, exosome component 100.0 1E-38 3.5E-43 249.3 10.2 151 1-151 33-205 (272)
14 3b4t_A Ribonuclease PH; RNAse, 100.0 1.3E-37 4.6E-42 241.9 16.2 150 1-151 13-187 (262)
15 1oys_A Ribonuclease PH; transf 100.0 9.6E-38 3.3E-42 240.5 14.9 150 1-151 8-182 (245)
16 3m7n_G Probable exosome comple 100.0 3.4E-35 1.2E-39 228.0 18.5 149 1-151 29-206 (259)
17 2wnr_A Probable exosome comple 100.0 7.5E-35 2.6E-39 227.2 17.9 148 1-151 31-215 (271)
18 2po1_B Probable exosome comple 100.0 5.5E-35 1.9E-39 228.7 16.5 148 1-151 33-218 (277)
19 2je6_A RRP42, exosome complex 100.0 1E-34 3.4E-39 227.1 17.6 148 1-151 36-221 (277)
20 2nn6_C Exosome complex exonucl 100.0 1.1E-34 3.8E-39 226.9 13.5 150 1-151 31-218 (278)
21 3gme_A Polyribonucleotide nucl 100.0 4.5E-34 1.6E-38 239.9 17.0 149 1-150 321-486 (549)
22 4aid_A Polyribonucleotide nucl 100.0 3.5E-33 1.2E-37 240.6 18.5 150 1-151 337-503 (726)
23 3u1k_A Polyribonucleotide nucl 100.0 6.4E-33 2.2E-37 236.7 16.9 148 1-150 325-499 (630)
24 1e3p_A Guanosine pentaphosphat 100.0 6.7E-33 2.3E-37 240.3 16.0 149 1-150 362-531 (757)
25 3cdi_A Polynucleotide phosphor 100.0 1.9E-32 6.6E-37 236.6 17.7 150 1-151 327-493 (723)
26 2nn6_A Polymyositis/scleroderm 100.0 1.9E-32 6.6E-37 221.0 16.0 146 1-150 46-231 (358)
27 2nn6_E Exosome complex exonucl 100.0 7.5E-33 2.6E-37 219.3 12.8 149 1-151 43-234 (305)
28 2wp8_A Exosome complex compone 100.0 2.2E-32 7.6E-37 216.5 13.7 146 1-150 30-228 (305)
29 3u1k_A Polyribonucleotide nucl 100.0 2.3E-29 7.9E-34 214.8 17.5 140 4-150 14-170 (630)
30 3cdi_A Polynucleotide phosphor 99.9 9.2E-26 3.1E-30 195.1 16.9 142 4-151 19-177 (723)
31 3gme_A Polyribonucleotide nucl 99.9 2.1E-25 7.1E-30 187.5 17.2 142 4-151 13-171 (549)
32 1e3p_A Guanosine pentaphosphat 99.9 2E-25 6.8E-30 193.7 17.2 142 4-151 36-195 (757)
33 4aid_A Polyribonucleotide nucl 99.9 6.5E-25 2.2E-29 189.3 16.2 141 4-150 27-184 (726)
34 1otg_A 5-carboxymethyl-2-hydro 62.9 23 0.00078 23.4 5.9 57 46-102 55-112 (125)
35 3e6q_A Putative 5-carboxymethy 57.8 35 0.0012 23.3 6.3 54 47-100 78-131 (146)
36 4h62_V Mediator of RNA polymer 54.3 12 0.0004 18.3 2.3 23 61-83 5-27 (31)
37 3o8m_A Hexokinase; rnaseh-like 23.6 1.6E+02 0.0054 24.2 5.8 47 70-117 426-472 (485)
38 4emo_A Sharpin; pleckstrin hom 22.3 32 0.0011 23.0 1.1 37 21-57 70-106 (129)
39 2qzi_A Uncharacterized protein 21.9 1.7E+02 0.0057 18.9 6.2 53 22-89 31-83 (103)
40 1n13_A PVLARGDC, pyruvoyl-depe 20.4 67 0.0023 18.1 2.1 19 110-128 31-49 (52)
No 1
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.7e-43 Score=271.77 Aligned_cols=151 Identities=35% Similarity=0.584 Sum_probs=143.9
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCES 80 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~ 80 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+++.+.++++.++++|.|..|+++.++++++++|+++|++
T Consensus 11 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~e~~~li~r~l~~ 90 (246)
T 3hkm_A 11 PNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90 (246)
T ss_dssp TTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEEEECSSSCCCTTHHHHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEEEEEeCCCCCCCChhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998766667788999999999999898888899999999999999
Q ss_pred hhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 81 ALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 81 ~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
+++++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++|+++|++.++++++||+..||+
T Consensus 91 l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~llDpt~~Ee~ 161 (246)
T 3hkm_A 91 ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQ 161 (246)
T ss_dssp HBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCEEESCCHHHHT
T ss_pred hcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEEEECCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999668999999999984
No 2
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.2e-43 Score=268.85 Aligned_cols=149 Identities=46% Similarity=0.848 Sum_probs=138.0
Q ss_pred CccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhh
Q psy15057 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESAL 82 (151)
Q Consensus 3 e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~~i 82 (151)
|+|++++++|++++++|||+|++|+|+|+|+|+||.+.++..+.++++.++++|+|+.|.++.++++++++|+++|++++
T Consensus 29 e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~~p~~g~~~~~e~~~~~li~r~l~~~i 108 (237)
T 2nn6_D 29 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVV 108 (237)
T ss_dssp CCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEecCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999986666677899999999999999888889999999999999999
Q ss_pred cccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 83 LTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 83 ~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
+++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++++|+++|++.++.+++||+..||.
T Consensus 109 ~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~~llDp~~~Ee~ 177 (237)
T 2nn6_D 109 LGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEK 177 (237)
T ss_dssp GGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEECTTCCEEESCCHHHHH
T ss_pred chhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEEecCCcEEeCCCHHHHh
Confidence 999999999999999999999999999999999999999999999999999999668999999999983
No 3
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=2.5e-40 Score=256.78 Aligned_cols=149 Identities=26% Similarity=0.423 Sum_probs=134.1
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccc-cCCCCeeEEEEEEc--CCC------CCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR--PKS------GLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~-~~~~~~~~v~v~~~--p~~------g~~~~~~~~~~ 71 (151)
+||+|++++++|++++++|||+|++|+|+|+|+|+||.++++. .+.++++.++++|. |++ +.++.++.+++
T Consensus 23 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~~~~re~ei~ 102 (258)
T 3m7n_D 23 FDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEIS 102 (258)
T ss_dssp TTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHH
T ss_pred cCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999999987654 35688888776654 532 23455677889
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCcccc
Q psy15057 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150 (151)
Q Consensus 72 ~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee 150 (151)
++|+++|+++|+++.||+|.|+|+++||++||++++|++||+++||+||||||+++++|+++|++ ++.+++||+..||
T Consensus 103 ~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i-~~~~llDpt~~Ee 180 (258)
T 3m7n_D 103 KVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA-DGQLVLDPMKEED 180 (258)
T ss_dssp HHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE-TTEEEESCCHHHH
T ss_pred HHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE-CCEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5899999999997
No 4
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4e-40 Score=253.17 Aligned_cols=150 Identities=28% Similarity=0.394 Sum_probs=134.4
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccc-cCCCCeeEEEEEEc--CCC------CCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR--PKS------GLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~-~~~~~~~~v~v~~~--p~~------g~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..++ .+.++++.++++|. |++ |.++.++++++
T Consensus 23 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~l~ 102 (240)
T 2wnr_B 23 FDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEIS 102 (240)
T ss_dssp TTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHH
T ss_pred cCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCccCCCCChhHHHHH
Confidence 4799999999999999999999999999999999999876553 35678887766655 653 23456677889
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 72 ~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+|+||+++++++|+|++ ++.+++||+..||.
T Consensus 103 ~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~~-~~~~l~Dp~~~Ee~ 181 (240)
T 2wnr_B 103 KITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKV-GDQVVLDLSEEEDK 181 (240)
T ss_dssp HHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEES-SSSEEESCCSHHHH
T ss_pred HHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEEE-CCEEEeCCCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 47899999999973
No 5
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.6e-40 Score=253.60 Aligned_cols=150 Identities=29% Similarity=0.475 Sum_probs=132.6
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccc--cCCCCeeEEEEEE--cCCC-------CCCcchhhH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ--KTIIDKASVEVIF--RPKS-------GLSFVQDRL 69 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~--~~~~~~~~v~v~~--~p~~-------g~~~~~~~~ 69 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.+++.. .+.++++.+.++| .|++ |.++.++.+
T Consensus 23 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~~ 102 (249)
T 2nn6_B 23 AGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCE 102 (249)
T ss_dssp TTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTTSTHHHHH
T ss_pred cCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccccccCCCCCHhHHH
Confidence 5899999999999999999999999999999999999875432 2467777666555 4542 224456678
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCccc
Q psy15057 70 KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149 (151)
Q Consensus 70 ~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~E 149 (151)
++++|+++|+++|+++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++++|+|+|++ ++.+++||+..|
T Consensus 103 ~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g~~-~~~~l~Dp~~~E 181 (249)
T 2nn6_B 103 MGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-DGTALADLSHVE 181 (249)
T ss_dssp HHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEEEE-TTEEEESCCHHH
T ss_pred HHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEEEE-CCeEEECCChHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cC
Q psy15057 150 SN 151 (151)
Q Consensus 150 e~ 151 (151)
|.
T Consensus 182 e~ 183 (249)
T 2nn6_B 182 EA 183 (249)
T ss_dssp HT
T ss_pred hc
Confidence 84
No 6
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=1.6e-39 Score=251.01 Aligned_cols=149 Identities=30% Similarity=0.394 Sum_probs=133.5
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCccccc-ccCCCCeeEEEEEEc--CCCC------CCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIFR--PKSG------LSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~-~~~~~~~~~v~v~~~--p~~g------~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..+ ..+.++++.+.++|. |++. .++.++.+++
T Consensus 23 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~~~~~s 102 (249)
T 2po1_A 23 KYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEIS 102 (249)
T ss_dssp TTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHH
T ss_pred cccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999999887655 355678887766664 4322 2445677889
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCcccc
Q psy15057 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150 (151)
Q Consensus 72 ~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee 150 (151)
++|+++|+++|+++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++++++|++ ++.+++||+..||
T Consensus 103 ~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~~-~~~~l~Dp~~~Ee 180 (249)
T 2po1_A 103 KVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGEIVLDLNKEED 180 (249)
T ss_dssp HHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE-TTEEEESCCHHHH
T ss_pred HHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE-CCEEEecCcHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5899999999997
No 7
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-43 Score=269.14 Aligned_cols=147 Identities=31% Similarity=0.525 Sum_probs=115.9
Q ss_pred CCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHHh
Q psy15057 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESA 81 (151)
Q Consensus 2 ~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~~ 81 (151)
||+|++++++|++++++|||+|++|+|+|+|+|+||.+++++.+.++++.++|+|+|++|+++.+ +++++|+|+|+++
T Consensus 3 ~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l~v~~~p~~G~~~~~--e~~~li~r~l~~~ 80 (222)
T 3krn_A 3 GRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDNKFN--VLNNIIHSTLSNA 80 (222)
T ss_dssp CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCCSSCCCC--CCS--SCTTHHHHC--CC
T ss_pred CcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEEEEEEcCCCCCCCHH--HHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999998776667789999999999999876433 8899999999999
Q ss_pred hcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 82 LLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 82 i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
++++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++|+++|++ +|++++|||..||+
T Consensus 81 i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~-~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 81 INLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRV-KDELIIDPTAKQEA 149 (222)
T ss_dssp SCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEEC-SSSEESSCCTTTTT
T ss_pred ccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEE-CCEEEeCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999997 58999999999984
No 8
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=249.63 Aligned_cols=149 Identities=25% Similarity=0.368 Sum_probs=128.8
Q ss_pred CCCccceEEEecCCCCC-CeeEEEEeCCeEEEEEEEcCccccc-ccCCCCeeEEEEEEc--CCC--------CCCcchhh
Q psy15057 1 MDSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIFR--PKS--------GLSFVQDR 68 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a-~GSa~v~~G~T~V~~~V~gp~~~~~-~~~~~~~~~v~v~~~--p~~--------g~~~~~~~ 68 (151)
++|+|++++++|+++++ +|||+|++|+|+|+|+|+||.++.+ ..+.++++.+.++|. |++ |+++.++.
T Consensus 19 ~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r~g~~~~~~~ 98 (246)
T 2wp8_B 19 WNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVL 98 (246)
T ss_dssp TTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--------------CHHHH
T ss_pred cCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCcccccccccCCCCChhHH
Confidence 47999999999999999 9999999999999999999997544 345688887766664 432 22345677
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCcc
Q psy15057 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQI 148 (151)
Q Consensus 69 ~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~ 148 (151)
+++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++++++|++ ++.+++||+..
T Consensus 99 ~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~g~~-~~~~l~Dp~~~ 177 (246)
T 2wp8_B 99 EIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY-DTTPLLDTNSL 177 (246)
T ss_dssp HHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEEE-TTEEESSCCHH
T ss_pred HHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEEEEE-CCEEEECCCch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred cc
Q psy15057 149 QS 150 (151)
Q Consensus 149 Ee 150 (151)
||
T Consensus 178 Ee 179 (246)
T 2wp8_B 178 EE 179 (246)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 9
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=3.1e-39 Score=249.49 Aligned_cols=149 Identities=34% Similarity=0.469 Sum_probs=133.4
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCccccc-ccCCCCeeEEEEEE--cCCC------CCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKI-QKTIIDKASVEVIF--RPKS------GLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~-~~~~~~~~~v~v~~--~p~~------g~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..+ ..+.++++.+.++| .|++ |.++.++++++
T Consensus 27 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~e~~~s 106 (250)
T 2je6_B 27 PDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELS 106 (250)
T ss_dssp TTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHH
T ss_pred ccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccCCCCChhHHHHH
Confidence 479999999999999999999999999999999999987554 34567777766655 4542 23456777889
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCCcccc
Q psy15057 72 SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQS 150 (151)
Q Consensus 72 ~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt~~Ee 150 (151)
++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++++++|++ ++.+++|||..||
T Consensus 107 ~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~-~~~~l~Dpt~~Ee 184 (250)
T 2je6_B 107 KVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA-DGVIILDLNETEA 184 (250)
T ss_dssp HHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE-TTEEEESCCHHHH
T ss_pred HHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE-CCEEEeCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5899999999997
No 10
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=4.3e-38 Score=243.87 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=131.3
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEE--cCCC-----------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF--RPKS-----------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~--~p~~-----------g~~~~~~ 67 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.++....++++.+.++| .|++ |+++.++
T Consensus 18 ~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~~g~~~~~~ 97 (255)
T 3dd6_A 18 KTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRT 97 (255)
T ss_dssp TTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-CCCCHHH
T ss_pred cCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCcccccccccccCCCCCHHH
Confidence 58999999999999999999999999999999999987533334557777766655 4532 4445566
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhc-----------CccccceeeEEEEEEe
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS-----------GISMRYILAAVSCIIN 136 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~a-----------gip~~~~~~avtv~~~ 136 (151)
.+++++|+|+|+++++++.||+|.|+|+++||++||++++|++||+++||+|+ ||||+++++|+++|++
T Consensus 98 ~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~~v~avsvg~i 177 (255)
T 3dd6_A 98 MEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIV 177 (255)
T ss_dssp HHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCccCceeEEEEEEE
Confidence 77899999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCeEE-eCCCcccc
Q psy15057 137 DKNEVI-LDANQIQS 150 (151)
Q Consensus 137 ~~~~~l-vDpt~~Ee 150 (151)
+ ++++ +|||..||
T Consensus 178 ~-g~~vllDpt~~Ee 191 (255)
T 3dd6_A 178 E-EQGVVLDLNYAED 191 (255)
T ss_dssp T-TTEEEESCCHHHH
T ss_pred C-CEEEEeCCCHHHH
Confidence 5 7777 99999997
No 11
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=1.3e-37 Score=241.14 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=131.3
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEE--cCCC-----------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF--RPKS-----------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~--~p~~-----------g~~~~~~ 67 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.+.....++++.+.++| .|++ |+++.++
T Consensus 8 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~G~~~~~~ 87 (255)
T 1udn_A 8 EDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRT 87 (255)
T ss_dssp TTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTTCSCCHHH
T ss_pred CCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCCCCCCHHH
Confidence 48999999999999999999999999999999999988643223346676665544 4532 3345667
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC-----------ccccceeeEEEEEEe
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG-----------ISMRYILAAVSCIIN 136 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag-----------ip~~~~~~avtv~~~ 136 (151)
++++++|+++|+++|+++.||+|.|+|+++||++||++++|++||+++||+|+| |||+++++++++|++
T Consensus 88 ~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v~avsvg~~ 167 (255)
T 1udn_A 88 HEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIV 167 (255)
T ss_dssp HHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCceeEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCeEEeCCCcccc
Q psy15057 137 DKNEVILDANQIQS 150 (151)
Q Consensus 137 ~~~~~lvDpt~~Ee 150 (151)
++++++||+..||
T Consensus 168 -~g~~llDpt~~Ee 180 (255)
T 1udn_A 168 -NDRILLDLNFEED 180 (255)
T ss_dssp -TTEEEESCCHHHH
T ss_pred -CCEEEECCCHHHH
Confidence 5899999999997
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.3e-37 Score=238.92 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=129.3
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEE--EcCCC-----------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI--FRPKS-----------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~--~~p~~-----------g~~~~~~ 67 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.+.....++++.+.++ +.|.+ |+++.++
T Consensus 9 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~G~~~~~~ 88 (239)
T 1r6l_A 9 ADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRT 88 (239)
T ss_dssp TTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHHTSCCHHH
T ss_pred CCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCCCCCcHHH
Confidence 4799999999999999999999999999999999998854322233566666555 55643 3345667
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC-----------ccccceeeEEEEEEe
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG-----------ISMRYILAAVSCIIN 136 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag-----------ip~~~~~~avtv~~~ 136 (151)
++++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+||| |||+++++++++|++
T Consensus 89 ~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~~avs~g~~ 168 (239)
T 1r6l_A 89 LEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIY 168 (239)
T ss_dssp HHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCceeEEEEEEE
Confidence 788999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCeEEeCCCcccc
Q psy15057 137 DKNEVILDANQIQS 150 (151)
Q Consensus 137 ~~~~~lvDpt~~Ee 150 (151)
++++++|||..||
T Consensus 169 -~~~~l~Dpt~~Ee 181 (239)
T 1r6l_A 169 -QGVPVLDLDYLED 181 (239)
T ss_dssp -TTEEEESCCHHHH
T ss_pred -CCEEEECCCHHHH
Confidence 5899999999997
No 13
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1e-38 Score=249.33 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=129.9
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccC------------CCCe--eEEEEEEcCCCCC----
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT------------IIDK--ASVEVIFRPKSGL---- 62 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~------------~~~~--~~v~v~~~p~~g~---- 62 (151)
++|+|++++++|+++++||||+|++|+|+|+|+|+||.+.++..+ .+++ .++++++.|++..
T Consensus 33 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~ 112 (272)
T 2nn6_F 33 PTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRA 112 (272)
T ss_dssp SSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTTSSSSCCC
T ss_pred ccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEecCCCcCCccC
Confidence 489999999999999999999999999999999999997655433 3444 4566677776432
Q ss_pred --CcchhhHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEe--cC
Q psy15057 63 --SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIIN--DK 138 (151)
Q Consensus 63 --~~~~~~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~--~~ 138 (151)
++.++++++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++|+++|++ .+
T Consensus 113 ~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~~~v~avsvg~~~~~~ 192 (272)
T 2nn6_F 113 PPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPA 192 (272)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSCCEEEECCCCSCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcccCcEEEEEEEEeeccC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999993 26
Q ss_pred CeEEeCCCccccC
Q psy15057 139 NEVILDANQIQSN 151 (151)
Q Consensus 139 ~~~lvDpt~~Ee~ 151 (151)
+.+|+|||..||.
T Consensus 193 ~~~llDpt~~Ee~ 205 (272)
T 2nn6_F 193 PTWLLDPTRLEEE 205 (272)
T ss_dssp CCCCSSCCTTTGG
T ss_pred CeEEeCCCHHHhc
Confidence 8999999999984
No 14
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-37 Score=241.86 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=130.7
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEE--cCCC-----------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF--RPKS-----------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~--~p~~-----------g~~~~~~ 67 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.++....++++.+.++| .|++ |+++.++
T Consensus 13 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~~~G~~~~~~ 92 (262)
T 3b4t_A 13 DHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRT 92 (262)
T ss_dssp TTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHHHHTSCCHHH
T ss_pred CcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCccccccccccCCCCCCHHH
Confidence 47999999999999999999999999999999999988643222335666666655 5532 3455667
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhc------------CccccceeeEEEEEE
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS------------GISMRYILAAVSCII 135 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~a------------gip~~~~~~avtv~~ 135 (151)
.+++++|+++|+++|+++.||+|+|+|+++||++||++++|++||+++||+|+ +|||+++++++++|+
T Consensus 93 ~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~~~~v~avsvg~ 172 (262)
T 3b4t_A 93 QEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGV 172 (262)
T ss_dssp HHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCBCSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcccCceeEEEEEE
Confidence 78899999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ecCCeEEeCCCccccC
Q psy15057 136 NDKNEVILDANQIQSN 151 (151)
Q Consensus 136 ~~~~~~lvDpt~~Ee~ 151 (151)
+ ++++++|||..||.
T Consensus 173 ~-~g~~l~Dpt~~Ee~ 187 (262)
T 3b4t_A 173 V-DGRIRVDLPYEEDS 187 (262)
T ss_dssp E-TTEEEESCCHHHHT
T ss_pred E-CCEEEECCCHHHHh
Confidence 9 58999999999984
No 15
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=9.6e-38 Score=240.54 Aligned_cols=150 Identities=20% Similarity=0.200 Sum_probs=123.2
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEE--cCCC-----------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF--RPKS-----------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~--~p~~-----------g~~~~~~ 67 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|++|...++....++++.+.++| .|++ |.++.++
T Consensus 8 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~G~~~~~~ 87 (245)
T 1oys_A 8 HDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSKGKISGRT 87 (245)
T ss_dssp TTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-------------------CHH
T ss_pred CCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccCCCCchHH
Confidence 58999999999999999999999999999999999988643333456777766655 4532 3355677
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC-----------ccccceeeEEEEEEe
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG-----------ISMRYILAAVSCIIN 136 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag-----------ip~~~~~~avtv~~~ 136 (151)
++++++|+++|+++|+++.||++.|+|+++||++|||+++|++||+++||+|+| +||+++++|+|+|++
T Consensus 88 ~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v~avs~g~~ 167 (245)
T 1oys_A 88 MEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGID 167 (245)
T ss_dssp HHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCceeEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCeEE-eCCCccccC
Q psy15057 137 DKNEVI-LDANQIQSN 151 (151)
Q Consensus 137 ~~~~~l-vDpt~~Ee~ 151 (151)
+ +.++ +||+..||.
T Consensus 168 ~-g~~vl~Dp~~~Ee~ 182 (245)
T 1oys_A 168 K-EQGILLDLNYEEDS 182 (245)
T ss_dssp T-TTEEEESCCHHHHH
T ss_pred C-CEEEEecCCHHHHh
Confidence 5 6666 999999973
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=3.4e-35 Score=227.99 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=127.6
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEE--EcCC------CCCCcchhhHHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVI--FRPK------SGLSFVQDRLKES 72 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~--~~p~------~g~~~~~~~~~~~ 72 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+++... +..+.++++.+.++ +.|+ .|+++.++.++++
T Consensus 29 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~-p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~sr 107 (259)
T 3m7n_G 29 FDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE-PYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELAR 107 (259)
T ss_dssp TTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEEC-CCSSCTTSCEEEEEEECCTTSCTTCCSSSSCHHHHHHHH
T ss_pred CccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccC-CCCCCCCceEEEEEEEeCCcccccccCCCCChHHHHHHH
Confidence 5899999999999999999999999999999999965421 23344666665554 5564 3445567778899
Q ss_pred HHHHHHHH--hhcccCC---CC---cEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCc-------------cccceeeEE
Q psy15057 73 VIKSTCES--ALLTMLH---PR---TSVILTIQELQDQGSLLSCCINAACLALINSGI-------------SMRYILAAV 131 (151)
Q Consensus 73 ~l~~~l~~--~i~~~~~---p~---~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agi-------------p~~~~~~av 131 (151)
+|+++|++ +++++.| |+ |.|+|+++||++||++++|++||+++||.|+|| ||+++++++
T Consensus 108 li~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~~~lp~~~~~~av 187 (259)
T 3m7n_G 108 VVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSV 187 (259)
T ss_dssp HHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSCEECCBCCCCEEE
T ss_pred HHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCceecccccCceeEE
Confidence 99999999 8888775 73 999999999999999999999999999999999 799999999
Q ss_pred EEEEecCCeEEeCCCccccC
Q psy15057 132 SCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 132 tv~~~~~~~~lvDpt~~Ee~ 151 (151)
|+|++ ++.+++|||..||.
T Consensus 188 tvg~~-~~~~l~Dpt~~Ee~ 206 (259)
T 3m7n_G 188 TSLIV-GNKYLVDPSREEMS 206 (259)
T ss_dssp EEEEE-TTEEEESCCTTGGG
T ss_pred EEEEE-CCEEEECCCHHHHh
Confidence 99999 58999999999984
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.5e-35 Score=227.18 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=128.5
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccCCCCeeEEEEEE--cCC------CCCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMY-GPVEAKIQKTIIDKASVEVIF--RPK------SGLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~-gp~~~~~~~~~~~~~~v~v~~--~p~------~g~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.+++ .+.++++.+.++| .|+ .|.++.++.+++
T Consensus 31 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~--~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s 108 (271)
T 2wnr_A 31 LHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF--PDTPEMGVILTNSELLPMASPTFEPGPPDERSVELS 108 (271)
T ss_dssp TTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCC--TTCTTCCEEEEEEEECGGGCTTCCCSSCCHHHHHHH
T ss_pred cccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCC--CCCCCceEEEEEEEeCCcccccccCCCCchHHHHHH
Confidence 47999999999999999999999999999999999 676543 3456777665555 453 244556777889
Q ss_pred HHHHHHHHH--hhcccCC---C---CcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC--------------------cc
Q psy15057 72 SVIKSTCES--ALLTMLH---P---RTSVILTIQELQDQGSLLSCCINAACLALINSG--------------------IS 123 (151)
Q Consensus 72 ~~l~~~l~~--~i~~~~~---p---~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag--------------------ip 123 (151)
++|+++|++ +++++.| | .|.|+|+++||++|||+++|++||+++||+|+| +|
T Consensus 109 ~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~~~~~~~~~~~~ip 188 (271)
T 2wnr_A 109 RVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLP 188 (271)
T ss_dssp HHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETTEEEEEEEEEEECC
T ss_pred HHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCceeeccCcccccC
Confidence 999999999 6887776 4 589999999999999999999999999999999 99
Q ss_pred ccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 124 MRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 124 ~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
|+++++++|+|++ ++.+++|||..||.
T Consensus 189 ~~~~~~avt~g~~-~~~~l~Dpt~~Ee~ 215 (271)
T 2wnr_A 189 VNRKALMCTFAKI-GNEIVLDPSLEEED 215 (271)
T ss_dssp BCCCEEEEEEEEE-TTEEEESCCHHHHT
T ss_pred ccCCeEEEEEEEE-CCEEEeCCCHHHHh
Confidence 9999999999999 58999999999984
No 18
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=5.5e-35 Score=228.72 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=128.0
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccCCCCeeEEEEEE--cCC------CCCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMY-GPVEAKIQKTIIDKASVEVIF--RPK------SGLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~-gp~~~~~~~~~~~~~~v~v~~--~p~------~g~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.++. .+.++++.+.++| .|+ .|.++.++.+++
T Consensus 33 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~--~~~~~~g~l~~~~~~~p~a~~~~~~g~~~~~~~~l~ 110 (277)
T 2po1_B 33 FEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF--PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELA 110 (277)
T ss_dssp TTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCC--TTCTTSCEEEEEEEECGGGCTTCCSSSCCHHHHHHH
T ss_pred CCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCC--CCCCCceEEEEEEEeCCCccccccCCCCChHHHHHH
Confidence 47999999999999999999999999999999999 777653 3557777665555 554 244556777889
Q ss_pred HHHHHHHHH--hhcccCC---C---CcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC---------------------c
Q psy15057 72 SVIKSTCES--ALLTMLH---P---RTSVILTIQELQDQGSLLSCCINAACLALINSG---------------------I 122 (151)
Q Consensus 72 ~~l~~~l~~--~i~~~~~---p---~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag---------------------i 122 (151)
++|+++|++ +|+++.| | .|.|+|+++||++|||+++|++||+++||+|+| +
T Consensus 111 ~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~~~~~~~~~~~~i 190 (277)
T 2po1_B 111 RVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPL 190 (277)
T ss_dssp HHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTTCCEEEEEEEEEC
T ss_pred HHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCCceeecccccccc
Confidence 999999998 6887765 4 479999999999999999999999999999999 8
Q ss_pred cccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 123 p~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
||+++|+++|+|+++ +.+++||+..||.
T Consensus 191 pl~~~~~avs~g~~~-~~~l~Dp~~~Ee~ 218 (277)
T 2po1_B 191 PVEKIPVPVTFAKIG-NILVVDPSLDEEL 218 (277)
T ss_dssp CBCCCCEEEEEEEET-TEEEESCCHHHHH
T ss_pred cccCceEEEEEEEEC-CEEEeCCCHHHHh
Confidence 999999999999994 7999999999973
No 19
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1e-34 Score=227.12 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=127.9
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccCCCCeeEEEEE--EcCCC------CCCcchhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMY-GPVEAKIQKTIIDKASVEVI--FRPKS------GLSFVQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~-gp~~~~~~~~~~~~~~v~v~--~~p~~------g~~~~~~~~~~ 71 (151)
++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.++ ..+.++++.+.++ +.|++ |+++.++.+++
T Consensus 36 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p--~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is 113 (277)
T 2je6_A 36 LTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP--YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELA 113 (277)
T ss_dssp TTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC--CTTCTTCCEEEEEEEECTTSCTTCCCSSCCHHHHHHH
T ss_pred cCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCC--CCCCCCccEEEEEEEeCCccCcccccCCCChHHHHHH
Confidence 47999999999999999999999999999999999 55554 3345677766554 45643 34456677889
Q ss_pred HHHHHHHHH--hhcccCC------CCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcC---------------------c
Q psy15057 72 SVIKSTCES--ALLTMLH------PRTSVILTIQELQDQGSLLSCCINAACLALINSG---------------------I 122 (151)
Q Consensus 72 ~~l~~~l~~--~i~~~~~------p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~ag---------------------i 122 (151)
++|+++|++ +++++.| ++|.|+|+++||++|||+++|++||+++||+|+| +
T Consensus 114 ~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~~~~~~~~~~~~~i 193 (277)
T 2je6_A 114 RVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKL 193 (277)
T ss_dssp HHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC---CEEEEEEEEEEC
T ss_pred HHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCcceEeccCccccc
Confidence 999999999 5888877 4799999999999999999999999999999999 9
Q ss_pred cccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 123 p~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
||+++|+++|+|++ ++.+++|||..||.
T Consensus 194 p~~~~~~avsvg~~-~~~~l~Dpt~~Ee~ 221 (277)
T 2je6_A 194 PLNYPVVTISVAKV-DKYLVVDPDLDEES 221 (277)
T ss_dssp CCSCCCEEEEEEEE-TTEEEESCCHHHHH
T ss_pred cccCCeEEEEEEEE-CCEEecCCCHHHHh
Confidence 99999999999999 58999999999973
No 20
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.1e-34 Score=226.86 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=127.2
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEE--cCCC------CCCcchhhHHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF--RPKS------GLSFVQDRLKES 72 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~--~p~~------g~~~~~~~~~~~ 72 (151)
++|+|++.+++|++++++|||+|++|+|+|+|+|+++... +....++++.+.++| .|++ |+++.++.++++
T Consensus 31 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~-p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~ 109 (278)
T 2nn6_C 31 LGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAA-PSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQ 109 (278)
T ss_dssp SCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECC-CCSSSTTCCCCEEEEECCSSSCTTSCSSSCCHHHHHHHH
T ss_pred cccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeec-CCCCCCCccEEEEEEEeCCccCccccCCCCcHHHHHHHH
Confidence 4799999999999999999999999999999999998752 344456777655555 4542 445566778899
Q ss_pred HHHHHHHH--hhcccC------CCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCc----------------------
Q psy15057 73 VIKSTCES--ALLTML------HPRTSVILTIQELQDQGSLLSCCINAACLALINSGI---------------------- 122 (151)
Q Consensus 73 ~l~~~l~~--~i~~~~------~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agi---------------------- 122 (151)
+|+++|++ +++++. .++|.|+|+++||++||++++|++||+++||+|+||
T Consensus 110 li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~~~~~~~~~~~~l 189 (278)
T 2nn6_C 110 FIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYL 189 (278)
T ss_dssp HHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSBCCCTTSCCCSCS
T ss_pred HHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcceecCccccccc
Confidence 99999995 676654 368999999999999999999999999999999996
Q ss_pred cccceeeEEEEEEecCCeEEeCCCccccC
Q psy15057 123 SMRYILAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 123 p~~~~~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
||+++++++|+|+++++.+++|||..||.
T Consensus 190 p~~~~~~avs~g~~~~~~~l~Dpt~~Ee~ 218 (278)
T 2nn6_C 190 NIRTHPVATSFAVFDDTLLIVDPTGEEEH 218 (278)
T ss_dssp CCSCCCEEEEEEECTTTCCEESCCTTTTT
T ss_pred ccCCceEEEEEEEECCceEEECCCHHHHh
Confidence 79999999999999533999999999984
No 21
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=4.5e-34 Score=239.94 Aligned_cols=149 Identities=20% Similarity=0.259 Sum_probs=124.2
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEE-EcCcccccccC-----CCCeeEEEEEEcCCC-------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQKT-----IIDKASVEVIFRPKS-------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V-~gp~~~~~~~~-----~~~~~~v~v~~~p~~-------g~~~~~~ 67 (151)
+||+|++++++|+++++||||+|++|+|+|+|+| .||.+..+..+ ...+..+++++.|++ |.++.++
T Consensus 321 ~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~Re 400 (549)
T 3gme_A 321 KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRRE 400 (549)
T ss_dssp TTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCSSCCCSSH
T ss_pred CCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCChhH
Confidence 5899999999999999999999999999999999 69976543211 223456677777852 2244566
Q ss_pred hHHHHHHHHHHHHhhc-ccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCC---eEEe
Q psy15057 68 RLKESVIKSTCESALL-TMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKN---EVIL 143 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~-~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~---~~lv 143 (151)
.+++++++++|+++|+ .++||++ |+|+++||++|||.++|++||+++||+||||||+++++|+++|+++++ .+++
T Consensus 401 ie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~~~~iL~ 479 (549)
T 3gme_A 401 IGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 (549)
T ss_dssp HHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEEEEEEcCCCceEEEe
Confidence 7789999999999999 6899986 999999999999999999999999999999999999999999999643 6899
Q ss_pred CCCcccc
Q psy15057 144 DANQIQS 150 (151)
Q Consensus 144 Dpt~~Ee 150 (151)
||+..||
T Consensus 480 D~~~~Ed 486 (549)
T 3gme_A 480 DILGDED 486 (549)
T ss_dssp SCCHHHH
T ss_pred cCChHHH
Confidence 9999997
No 22
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.5e-33 Score=240.64 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=128.1
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEE-EcCcccccccC---CCCee--EEEEEEcCCC-------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQKT---IIDKA--SVEVIFRPKS-------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V-~gp~~~~~~~~---~~~~~--~v~v~~~p~~-------g~~~~~~ 67 (151)
+||+|++++++|+++++||||+|++|+|+|+|+| .||.++.++.+ .++++ .+++++.|++ |.++.++
T Consensus 337 ~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~~~g~~~~Re 416 (726)
T 4aid_A 337 VKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRRE 416 (726)
T ss_dssp TTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCCCCSSCCHHH
T ss_pred CCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccccCCCcchhh
Confidence 5899999999999999999999999999999999 69997654321 23444 5566677742 2244556
Q ss_pred hHHHHHHHHHHHHhhc-ccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCC---eEEe
Q psy15057 68 RLKESVIKSTCESALL-TMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKN---EVIL 143 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~-~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~---~~lv 143 (151)
.+++++++++|+++|+ .++||++ |+|+++||++|||+++|++||+++||+||||||+++++|+++|+++++ .+++
T Consensus 417 ie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~VaavsvGli~~g~~~~iLl 495 (726)
T 4aid_A 417 IGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVLS 495 (726)
T ss_dssp HHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEECSSCEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEEEEEEcCCCceEEEe
Confidence 6788999999999999 6899996 999999999999999999999999999999999999999999999753 4888
Q ss_pred CCCccccC
Q psy15057 144 DANQIQSN 151 (151)
Q Consensus 144 Dpt~~Ee~ 151 (151)
||+..||.
T Consensus 496 D~~~~Ed~ 503 (726)
T 4aid_A 496 DILGDEDH 503 (726)
T ss_dssp SCCTTGGG
T ss_pred cCChhHHh
Confidence 99999973
No 23
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=236.66 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=125.3
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCc-cccccc---------CCCCeeEEEEEEcCCC-------CCC
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPV-EAKIQK---------TIIDKASVEVIFRPKS-------GLS 63 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~-~~~~~~---------~~~~~~~v~v~~~p~~-------g~~ 63 (151)
+||+|++++++|+++++||||+|++|+|+|+|+|++|. .+..+. ....+..+++++.|++ |.+
T Consensus 325 ~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~ 404 (630)
T 3u1k_A 325 LTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGL 404 (630)
T ss_dssp TTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSC
T ss_pred CccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcccccccCCCC
Confidence 58999999999999999999999999999999999854 322211 1223456788888864 233
Q ss_pred cchhhHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecC-----
Q psy15057 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK----- 138 (151)
Q Consensus 64 ~~~~~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~----- 138 (151)
+.++.+++++++++|+++++ ..||++ |+|+++||++|||.++|++||+++||+||||||+++++|+++|++++
T Consensus 405 ~rREi~~~~Li~raLr~vi~-~~~p~t-I~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~~~~ 482 (630)
T 3u1k_A 405 NRRELGHGALAEKALYPVIP-RDFPFT-IRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK 482 (630)
T ss_dssp CHHHHHHHHHHHHHHGGGSC-TTCSSE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECSSS
T ss_pred ChHHHHHHHHHHHHHHhhCc-ccCCeE-EEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceEEEEEEEecCCCccc
Confidence 45566678999999999998 569975 99999999999999999999999999999999999999999999972
Q ss_pred C-----eEEeCCCcccc
Q psy15057 139 N-----EVILDANQIQS 150 (151)
Q Consensus 139 ~-----~~lvDpt~~Ee 150 (151)
+ .+|+||+..||
T Consensus 483 g~~~~~~iLlD~~~~Ed 499 (630)
T 3u1k_A 483 GEIEDYRLLTDILGIED 499 (630)
T ss_dssp SCEEEEEEEESCCHHHH
T ss_pred ccccCceEEecCCHHHH
Confidence 3 69999999997
No 24
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=6.7e-33 Score=240.29 Aligned_cols=149 Identities=16% Similarity=0.248 Sum_probs=128.7
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccC---CCCee--EEEEEEcCCC-------CCCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMY-GPVEAKIQKT---IIDKA--SVEVIFRPKS-------GLSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~-gp~~~~~~~~---~~~~~--~v~v~~~p~~-------g~~~~~~ 67 (151)
++|+|++++++|+++++||||+|++|+|+|+|+|+ ||.++.++.+ .++++ .+++++.|++ |.++.++
T Consensus 362 ~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~~~~g~~~~re 441 (757)
T 1e3p_A 362 VTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRRE 441 (757)
T ss_dssp TTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCCCCSSCCHHH
T ss_pred cccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcccccccCCCCCchhH
Confidence 58999999999999999999999999999999995 9987654322 34544 5777887842 2244566
Q ss_pred hHHHHHHHHHHHHhhc-ccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecC---C----
Q psy15057 68 RLKESVIKSTCESALL-TMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDK---N---- 139 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~-~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~---~---- 139 (151)
.+++++++++|+++|+ .+.||++ |+|+++||++|||+++|++||+++||+||||||+++++|+++|++++ +
T Consensus 442 ie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs~gli~eg~dg~~~~ 520 (757)
T 1e3p_A 442 IGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHY 520 (757)
T ss_dssp HHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEEEEEEecCCCCccce
Confidence 7789999999999999 6899976 99999999999999999999999999999999999999999999942 2
Q ss_pred eEEeCCCcccc
Q psy15057 140 EVILDANQIQS 150 (151)
Q Consensus 140 ~~lvDpt~~Ee 150 (151)
.+|+||+..||
T Consensus 521 ~iLlDp~~~Ed 531 (757)
T 1e3p_A 521 VALTDILGAED 531 (757)
T ss_dssp EEEESCCHHHH
T ss_pred eEEeCCCHHHH
Confidence 79999999997
No 25
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.9e-32 Score=236.61 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=124.0
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEE-EcCccccccc-----CCCCeeEEEEEEcCCCC-------CCcchh
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASM-YGPVEAKIQK-----TIIDKASVEVIFRPKSG-------LSFVQD 67 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V-~gp~~~~~~~-----~~~~~~~v~v~~~p~~g-------~~~~~~ 67 (151)
++|+|++++++|+++++||||+|++|+|+|+|+| .||.+.++.. +...+..+++++.|++. .++.++
T Consensus 327 ~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~~RE 406 (723)
T 3cdi_A 327 KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRRE 406 (723)
T ss_dssp TTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC-----CT
T ss_pred ccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccccCCCCCHHH
Confidence 5899999999999999999999999999999999 5998643321 23456678888888632 223455
Q ss_pred hHHHHHHHHHHHHhhcc-cCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccceeeEEEEEEecCC---eEEe
Q psy15057 68 RLKESVIKSTCESALLT-MLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYILAAVSCIINDKN---EVIL 143 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~-~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~---~~lv 143 (151)
...+.+++++|+++|++ ++||++ |+|+++||++|||+++|++||+++||+||||||+++++|+++|++++| .+|+
T Consensus 407 i~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~~~~iL~ 485 (723)
T 3cdi_A 407 IGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 485 (723)
T ss_dssp THHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEEEEEEcCCCceEEEE
Confidence 56789999999999996 789976 999999999999999999999999999999999999999999999644 4999
Q ss_pred CCCccccC
Q psy15057 144 DANQIQSN 151 (151)
Q Consensus 144 Dpt~~Ee~ 151 (151)
||+..||.
T Consensus 486 Dp~~~Ed~ 493 (723)
T 3cdi_A 486 DILGDEDH 493 (723)
T ss_dssp SCCGGGGG
T ss_pred CCChHHhh
Confidence 99999984
No 26
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.9e-32 Score=220.95 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=123.2
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeE--EEEEEcCCC------CCCcchhhHHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS--VEVIFRPKS------GLSFVQDRLKES 72 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~--v~v~~~p~~------g~~~~~~~~~~~ 72 (151)
++|+|++.+++| +++|||+|++|+|+|+|+|++|... +..+.++++. ++|++.|.+ |+++.++.++++
T Consensus 46 ~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~-p~~~~~~~g~l~~~v~~~p~a~~~~~~g~~s~~e~eisr 121 (358)
T 2nn6_A 46 TYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVS-PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNR 121 (358)
T ss_dssp TTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEEC-CCSTTTTSCCEEEEEEECTTTCSSCCSSSTHHHHTHHHH
T ss_pred ccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccC-CcccCCCCcEEEEEEEecCCccccccCCCCCHHHHHHHH
Confidence 479999999999 9999999999999999999999843 3334456555 556666753 444556778899
Q ss_pred HHHHHHHHhhccc--------CCCCcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCcc---------------------
Q psy15057 73 VIKSTCESALLTM--------LHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS--------------------- 123 (151)
Q Consensus 73 ~l~~~l~~~i~~~--------~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip--------------------- 123 (151)
+|+++|++...++ ..|+|.|+|+++||++|||+++|+++|+++||+|+|+|
T Consensus 122 li~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~v~i~~~~~~~~~~ 201 (358)
T 2nn6_A 122 LMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVP 201 (358)
T ss_dssp HHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCCBCCHHHHTSCCC
T ss_pred HHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCeeEecccccccccc
Confidence 9999999954433 34789999999999999999999999999999999999
Q ss_pred --ccceeeEEEEEEec-CCeEEeCCCcccc
Q psy15057 124 --MRYILAAVSCIIND-KNEVILDANQIQS 150 (151)
Q Consensus 124 --~~~~~~avtv~~~~-~~~~lvDpt~~Ee 150 (151)
|+++|+++|+|++. ++.+|+|||..||
T Consensus 202 l~i~~~p~avsvgl~~~~~~illDPt~~Ee 231 (358)
T 2nn6_A 202 LSIHHMPICVSFAFFQQGTYLLVDPNEREE 231 (358)
T ss_dssp CCBCCCEEEEEEEECTTTSSEEESCCHHHH
T ss_pred cCccCCEEEEEEEEEeeCCEEEECCCHHHH
Confidence 89999999999884 4689999999987
No 27
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.5e-33 Score=219.29 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=124.7
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEE--EEcCCCC-----CC-cchhhHHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV--IFRPKSG-----LS-FVQDRLKES 72 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v--~~~p~~g-----~~-~~~~~~~~~ 72 (151)
++|+|++.+++|++++++|||+|++|+|+|+|+|+++... +..+.++++.+.+ ++.|++. ++ +.++.++++
T Consensus 43 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~-p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~~~~~~~isr 121 (305)
T 2nn6_E 43 CEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGT-PKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIAN 121 (305)
T ss_dssp SSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSC-CCSSSCSSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHH
T ss_pred CcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeC-CCcCCCCceEEEEEEEeCCCcCccccCCCCchHHHHHHH
Confidence 4799999999999999999999999999999999998752 3444566665555 5556532 22 245667899
Q ss_pred HHHHHHHH--hhccc---CCC---CcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCccccce-----------------
Q psy15057 73 VIKSTCES--ALLTM---LHP---RTSVILTIQELQDQGSLLSCCINAACLALINSGISMRYI----------------- 127 (151)
Q Consensus 73 ~l~~~l~~--~i~~~---~~p---~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip~~~~----------------- 127 (151)
+|+++|++ +|+++ .|| .|.|+|+++||++|||+++|++||+++||.|+++|+.++
T Consensus 122 li~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~ 201 (305)
T 2nn6_E 122 TLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPY 201 (305)
T ss_dssp HHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC------EEEEESSC
T ss_pred HHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCCCceeeeccCccc
Confidence 99999999 78777 677 477999999999999999999999999999999997654
Q ss_pred ----------eeEEEEEEecCCeEEeCCCccccC
Q psy15057 128 ----------LAAVSCIINDKNEVILDANQIQSN 151 (151)
Q Consensus 128 ----------~~avtv~~~~~~~~lvDpt~~Ee~ 151 (151)
|+++|+|++ ++.+|+|||..||.
T Consensus 202 ~~~~l~l~~~p~avt~g~i-~~~~l~Dpt~~Ee~ 234 (305)
T 2nn6_E 202 DCIRLSVENVPCIVTLCKI-GYRHVVDATLQEEA 234 (305)
T ss_dssp CCSCCCCTTCCCCEEEEES-SSSEESSCCHHHHT
T ss_pred ccccccccCceEEEEEEEE-CCEEEECCCHHHHh
Confidence 679999999 58999999999984
No 28
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-32 Score=216.49 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=111.4
Q ss_pred CCCccceEEEecCCCCCCeeEEEEeCCeEEEEEEEcCcccccccCCCCe--eEEEEEEcCCC------CCCc-chhhHHH
Q psy15057 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDK--ASVEVIFRPKS------GLSF-VQDRLKE 71 (151)
Q Consensus 1 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~--~~v~v~~~p~~------g~~~-~~~~~~~ 71 (151)
++|+|++++++| +++|||+|++|+|+|+|+|++|... +..+.+++ ..++++|.|.+ |+++ .++.+++
T Consensus 30 ~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~-p~~~~~~~g~~~~~ve~~~~~~~~~~~g~~~~~~~~~is 105 (305)
T 2wp8_A 30 FDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQ-PYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCS 105 (305)
T ss_dssp TTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC--CCSSCTTCCEEEEEECCC---------------------
T ss_pred CcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccC-CcccCCCCcEEEEEEEECCCCCccccCCCCChhHHHHHH
Confidence 479999999999 8999999999999999999998743 33334554 45666766642 4455 6667789
Q ss_pred HHHHHHHH--HhhcccCC---C---CcEEEEEEEEEeCCCChhHHHHHHHHHHHHhcCcc--------------------
Q psy15057 72 SVIKSTCE--SALLTMLH---P---RTSVILTIQELQDQGSLLSCCINAACLALINSGIS-------------------- 123 (151)
Q Consensus 72 ~~l~~~l~--~~i~~~~~---p---~~~i~i~v~vl~~dG~~l~a~inaa~lAL~~agip-------------------- 123 (151)
++|+++|+ ++|+++.+ | .|.|+|+++||++|||+++|+++|+++||+|+|+|
T Consensus 106 ~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~~~~i~~~~~~~~~ 185 (305)
T 2wp8_A 106 RIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPV 185 (305)
T ss_dssp -CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSSCCBCCSSSSCCE
T ss_pred HHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCCceEeccccccccc
Confidence 99999999 57777644 4 38899999999999999999999999999999999
Q ss_pred ---ccceeeEEEEEEec---------C----CeEEeCCCcccc
Q psy15057 124 ---MRYILAAVSCIIND---------K----NEVILDANQIQS 150 (151)
Q Consensus 124 ---~~~~~~avtv~~~~---------~----~~~lvDpt~~Ee 150 (151)
|++.|+++|+|+++ + +.+|+||+..||
T Consensus 186 ~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee 228 (305)
T 2wp8_A 186 PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEE 228 (305)
T ss_dssp ECCBSCCCEEEEEEECC---------------CEEESCCHHHH
T ss_pred ccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHH
Confidence 77899999999994 2 689999999997
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=214.77 Aligned_cols=140 Identities=20% Similarity=0.172 Sum_probs=119.6
Q ss_pred ccceEEEecCCCC-CCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEc--CC-C-----------CCCcchhh
Q psy15057 4 LRELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR--PK-S-----------GLSFVQDR 68 (151)
Q Consensus 4 ~R~i~i~~g~~~~-a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~--p~-~-----------g~~~~~~~ 68 (151)
-|++++++|.+++ |+|||++++|+|+|+|+|+||.++++. +...+.|+|+ ++ + |+++.++.
T Consensus 14 ~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~ 89 (630)
T 3u1k_A 14 NRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEI 89 (630)
T ss_dssp SSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----SSCCEEEEEECSEETTTTEECTTC-----CCHHHH
T ss_pred CEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC----CeeEEEEEEEecccccCCCCccccccCCCCCHHHH
Confidence 5999999999996 999999999999999999999976543 3444556554 32 2 23445566
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCCh--hHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCC
Q psy15057 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL--LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146 (151)
Q Consensus 69 ~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~--l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt 146 (151)
+++++|+|.|++++++..||.. +|+++||+.||+. ..+++||+++||.++||||+++++||++|++ +|++++|||
T Consensus 90 lisRlIdR~lRp~~~~~~~~~~--qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i-~g~~vldPt 166 (630)
T 3u1k_A 90 LTSRIIDRSIRPLFPAGYFYDT--QVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGII-DGEYVVNPT 166 (630)
T ss_dssp HHHHHHHHHHGGGSCTTCCCCE--EEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEE-TTEEEESCC
T ss_pred HHHHHHhHHhhhcccccCCCce--EEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEE-CCEEEECCC
Confidence 7899999999999999888774 5799999999998 8899999999999999999999999999999 599999999
Q ss_pred cccc
Q psy15057 147 QIQS 150 (151)
Q Consensus 147 ~~Ee 150 (151)
..|+
T Consensus 167 ~~E~ 170 (630)
T 3u1k_A 167 RKEM 170 (630)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.94 E-value=9.2e-26 Score=195.07 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=120.2
Q ss_pred ccceEEEecCCC-CCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcCC--------------CCCCcchhh
Q psy15057 4 LRELKSQLNILS-RSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--------------SGLSFVQDR 68 (151)
Q Consensus 4 ~R~i~i~~g~~~-~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~--------------~g~~~~~~~ 68 (151)
-|++.+++|.+. +|+||+++++|+|+|+|+|+++.++++. .+...++|+|.+. .|+|+.++.
T Consensus 19 ~r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~---~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 19 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS---CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred CEEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC---CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 389999999885 8999999999999999999999765432 1333477777643 345666777
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCCh--hHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCC
Q psy15057 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL--LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146 (151)
Q Consensus 69 ~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~--l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt 146 (151)
+++++|+|.|++++.... +|.++|+++||+.||+. ..+++|||++||..++||+++.++||++|++ +|++++|||
T Consensus 96 l~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i-~g~~v~nPt 172 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNPT 172 (723)
T ss_dssp HHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEE-TTEEEESCC
T ss_pred HHHHHhCccchhcccccC--cceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEE-CCEEEECcC
Confidence 889999999999887664 68899999999999996 5699999999999999999999999999999 589999999
Q ss_pred ccccC
Q psy15057 147 QIQSN 151 (151)
Q Consensus 147 ~~Ee~ 151 (151)
..|++
T Consensus 173 ~~e~~ 177 (723)
T 3cdi_A 173 QDELK 177 (723)
T ss_dssp TTGGG
T ss_pred HHHHH
Confidence 99873
No 31
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.93 E-value=2.1e-25 Score=187.48 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=117.0
Q ss_pred ccceEEEecCCC-CCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcC--------------CCCCCcchhh
Q psy15057 4 LRELKSQLNILS-RSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP--------------KSGLSFVQDR 68 (151)
Q Consensus 4 ~R~i~i~~g~~~-~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p--------------~~g~~~~~~~ 68 (151)
-|++++++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+...+.++|.. ..|+++.++.
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g---~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~~ 89 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 89 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT---CCSCCEEEEEEECGGGTTCCCSCC-----CCCHHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC---CCCccceeeeeeehhhcccCCCcCcCcCCCCChhhh
Confidence 489999999887 5999999999999999999999865422 223336666642 1245666777
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCCh--hHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCC
Q psy15057 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL--LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146 (151)
Q Consensus 69 ~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~--l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt 146 (151)
+++++|+|.|+++++...+ ..++|+++||+.||+. ..+++||+++||..++||+++.++||++|++ +|++++|||
T Consensus 90 l~~RlIdR~lRplfp~~~~--~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i-~g~~vlnPt 166 (549)
T 3gme_A 90 LIARLIDRPIRPLFPEGFV--NEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNPT 166 (549)
T ss_dssp HHHHHHHHHHGGGSCTTCC--SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEE-TTEEEESCC
T ss_pred HHHHHhCCccccccccCCc--ccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEE-CCEEEECCC
Confidence 8899999999998877653 4689999999999865 3788999999999999999999999999998 599999999
Q ss_pred ccccC
Q psy15057 147 QIQSN 151 (151)
Q Consensus 147 ~~Ee~ 151 (151)
..|++
T Consensus 167 ~~e~~ 171 (549)
T 3gme_A 167 QDELK 171 (549)
T ss_dssp TTTTT
T ss_pred HHHHh
Confidence 99864
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.93 E-value=2e-25 Score=193.66 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=120.2
Q ss_pred ccceEEEecCCC-CCCeeEEEEe-CCeEEEEEEEcCcccccccCCCCeeEEEEEEcCC--------------CCCCcchh
Q psy15057 4 LRELKSQLNILS-RSDGSVIFSQ-GQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--------------SGLSFVQD 67 (151)
Q Consensus 4 ~R~i~i~~g~~~-~a~GSa~v~~-G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~--------------~g~~~~~~ 67 (151)
-|++++++|.+. +|+||+++++ |+|+|+|+|++|.++++. .+...|.|+|+.. .|+++.++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~---~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e 112 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ---LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDA 112 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTT---CSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCC---CCCccEEEEEEecccccccCCCcccccCcCCChHH
Confidence 489999999975 7999999999 999999999999876443 1233377777421 24566778
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCCh--hHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCC
Q psy15057 68 RLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL--LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDA 145 (151)
Q Consensus 68 ~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~--l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDp 145 (151)
++++++|+|.|+++++... +..++|+++||+.||+. ..+++|||++||.++||||++.++||++|++ +|++++||
T Consensus 113 ~l~~RlIdR~LRplfp~~~--~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~-~g~~vlnP 189 (757)
T 1e3p_A 113 ILTCRLIDRPLRPSFKKGL--RNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALI-RGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHGGGBCTTB--CEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEE-TTEEEESC
T ss_pred HHHHHHHCCcchhccccCC--CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEE-CCEEEECC
Confidence 8899999999999876654 45799999999999865 9999999999999999999999999999999 59999999
Q ss_pred CccccC
Q psy15057 146 NQIQSN 151 (151)
Q Consensus 146 t~~Ee~ 151 (151)
|..|++
T Consensus 190 t~~e~~ 195 (757)
T 1e3p_A 190 THTELE 195 (757)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 998863
No 33
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.93 E-value=6.5e-25 Score=189.35 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=118.6
Q ss_pred ccceEEEecCCC-CCCeeEEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcC--------------CCCCCcchhh
Q psy15057 4 LRELKSQLNILS-RSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRP--------------KSGLSFVQDR 68 (151)
Q Consensus 4 ~R~i~i~~g~~~-~a~GSa~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p--------------~~g~~~~~~~ 68 (151)
-|++++++|.+. +|+||+++++|+|+|+|+|+++.++++. .+...+.++|.+ ..|+++.++.
T Consensus 27 ~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g---~df~pltveY~ek~~a~G~iPg~~~~REGrps~~~~ 103 (726)
T 4aid_A 27 GKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG---QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEKET 103 (726)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT---CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHHHH
T ss_pred CeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC---CCCcCceeeeeeehhhcccCCCcccCCCCCCCchhh
Confidence 589999999887 5999999999999999999999865432 233346666642 1255666777
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCCh--hHHHHHHHHHHHHhcCccccceeeEEEEEEecCCeEEeCCC
Q psy15057 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSL--LSCCINAACLALINSGISMRYILAAVSCIINDKNEVILDAN 146 (151)
Q Consensus 69 ~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~--l~a~inaa~lAL~~agip~~~~~~avtv~~~~~~~~lvDpt 146 (151)
+++++|.|.|+++++...+ +.++|+++||+.||+. ..+++|||++||.+++||+++.++||++|++ +|++++|||
T Consensus 104 li~RlIdR~lRplf~~~~~--~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i-~g~~vldPt 180 (726)
T 4aid_A 104 LVSRLIDRPIRPLFVKGFK--NEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWV-DGAYVLNPT 180 (726)
T ss_dssp HHHHHHHHHHGGGBCTTCC--SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEE-TTEEEESCC
T ss_pred hHHHHhCCccccccccCCc--cceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEE-CCEEEECCC
Confidence 8999999999999887653 5699999999999875 4789999999999999999999999999998 599999999
Q ss_pred cccc
Q psy15057 147 QIQS 150 (151)
Q Consensus 147 ~~Ee 150 (151)
..|+
T Consensus 181 ~~E~ 184 (726)
T 4aid_A 181 LDEM 184 (726)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 34
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=62.88 E-value=23 Score=23.37 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=34.9
Q ss_pred CCCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhhcc-cCCCCcEEEEEEEEEeCC
Q psy15057 46 IIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLT-MLHPRTSVILTIQELQDQ 102 (151)
Q Consensus 46 ~~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~~i~~-~~~p~~~i~i~v~vl~~d 102 (151)
.++.+.+.++++-..|++..+.+.+...|.+.+...+.. -..|...+.|.+.-++.+
T Consensus 55 ~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~ 112 (125)
T 1otg_A 55 QHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPT 112 (125)
T ss_dssp CSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEECCSS
T ss_pred CCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEEcCCc
Confidence 345688999998888986566666777776666655432 122334455555544444
No 35
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=57.76 E-value=35 Score=23.32 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=34.9
Q ss_pred CCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcEEEEEEEEEe
Q psy15057 47 IDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQ 100 (151)
Q Consensus 47 ~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~ 100 (151)
++.++|.|+++-..|++..+.+.+...|.+++...+.-..-+...+.|.+.-++
T Consensus 78 ~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E~~ 131 (146)
T 3e6q_A 78 VERAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVREME 131 (146)
T ss_dssp CCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEEEC
T ss_pred CCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEECC
Confidence 456889998887889876677778888877777665432112344555444443
No 36
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=54.32 E-value=12 Score=18.28 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=15.3
Q ss_pred CCCcchhhHHHHHHHHHHHHhhc
Q psy15057 61 GLSFVQDRLKESVIKSTCESALL 83 (151)
Q Consensus 61 g~~~~~~~~~~~~l~~~l~~~i~ 83 (151)
|..+.+++.++.+|+++++..+.
T Consensus 5 gvtrfdekqieelldncietfva 27 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp -----CHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHh
Confidence 44456788999999999987663
No 37
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=23.55 E-value=1.6e+02 Score=24.19 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEEEeCCCChhHHHHHHHHHHH
Q psy15057 70 KESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLAL 117 (151)
Q Consensus 70 ~~~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~dG~~l~a~inaa~lAL 117 (151)
+...+++.++.++..+.-......|.+. +..||+..-|++.|++++=
T Consensus 426 f~~~~~~~l~~ll~~~~~~~~~~~v~l~-~a~DGSg~GAAliAa~a~~ 472 (485)
T 3o8m_A 426 YKEKAAQALKDIYNWDVEKMEDHPIQLV-AAEDGSGVGAAIIACLTQK 472 (485)
T ss_dssp HHHHHHHHHHHHHTCCCCSGGGCSEEEE-ECCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCceEEEE-EcCCChHHHHHHHHHHHHH
Confidence 4556666666655422110001223333 7899999999988887653
No 38
>4emo_A Sharpin; pleckstrin homology (PH) domain, lubac, SIPL1, linear ubiqui HOIL-1L, HOIP, protein binding; 2.00A {Homo sapiens}
Probab=22.30 E-value=32 Score=22.97 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=21.7
Q ss_pred EEEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEc
Q psy15057 21 VIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFR 57 (151)
Q Consensus 21 a~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~ 57 (151)
..+++---.|-++|+||.+-.-..-.+..+.+.++|.
T Consensus 70 ~~~Ew~LeSV~ytvrgP~~hELqpp~~gpg~lsl~F~ 106 (129)
T 4emo_A 70 VNLEWPLESVSYTIRGPTQHELQPPPGGPGTLSMHFL 106 (129)
T ss_dssp CCEEEEGGGSEEEEEETTEEEEECCTTSSCCEEEEES
T ss_pred eeeEeecceeEEEecCcccccccCCCCCCCeEEEeeC
Confidence 3344444568999999984322222234566777776
No 39
>2qzi_A Uncharacterized protein; APC86636, streptococcus thermophilus LMG 18311, structural G PSI-2, protein structure initiative; 2.20A {Streptococcus thermophilus}
Probab=21.93 E-value=1.7e+02 Score=18.87 Aligned_cols=53 Identities=21% Similarity=0.153 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEEEEcCcccccccCCCCeeEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhhcccCCCC
Q psy15057 22 IFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPR 89 (151)
Q Consensus 22 ~v~~G~T~V~~~V~gp~~~~~~~~~~~~~~v~v~~~p~~g~~~~~~~~~~~~l~~~l~~~i~~~~~p~ 89 (151)
.+++|+|.|+.+=. |. ..++-+... .+.-++.|++..+++.|..-|+.+.|..
T Consensus 31 VYSlGnT~Vvyt~a-~~------------h~eili~N~--~R~I~~~EIefii~~lLk~~i~~~~~~~ 83 (103)
T 2qzi_A 31 TYSAGNTDVVFTQA-PK------------HYELLISNK--HRAVKDNELEVIREFFLKRKIDKDIVLM 83 (103)
T ss_dssp EEEETTEEEEEEEE-TT------------EEEEEEECS--SSCCCHHHHHHHHHHHHHHTCCGGGBCT
T ss_pred EEecCCceEEEEec-CC------------ceEEEEEcC--CCcCCHHHHHHHHHHHHhcccccccccc
Confidence 57889999987533 11 123333321 1235677888888888887655555544
No 40
>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A
Probab=20.35 E-value=67 Score=18.10 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCcccccee
Q psy15057 110 INAACLALINSGISMRYIL 128 (151)
Q Consensus 110 inaa~lAL~~agip~~~~~ 128 (151)
++|==.||.||||....++
T Consensus 31 L~sFd~AL~dAgI~n~NLV 49 (52)
T 1n13_A 31 LNAFDGALLNAGIGNVNLI 49 (52)
T ss_dssp HHHHHHHHHHHTCTTSEEE
T ss_pred HHHHHHHHHHCCCccceeE
Confidence 4566789999999987764
Done!