Your job contains 1 sequence.
>psy15057
MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS
GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINS
GISMRYILAAVSCIINDKNEVILDANQIQSN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15057
(151 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 373 2.2e-34 1
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 372 2.8e-34 1
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 372 2.8e-34 1
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 371 3.6e-34 1
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 371 3.6e-34 1
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 347 1.3e-31 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 276 4.2e-24 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 264 7.8e-23 1
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 233 1.5e-19 1
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 208 6.7e-17 1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 201 3.7e-16 1
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 198 7.7e-16 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 187 1.1e-14 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 184 2.3e-14 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 181 4.9e-14 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 178 1.0e-13 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 178 1.0e-13 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 178 1.0e-13 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 178 1.0e-13 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 178 1.0e-13 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 177 1.3e-13 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 177 1.3e-13 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 173 3.4e-13 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 164 3.1e-12 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 134 8.9e-09 1
GENEDB_PFALCIPARUM|PF14_0256 - symbol:PF14_0256 "exosome ... 133 1.2e-08 1
UNIPROTKB|Q8ILI7 - symbol:PF14_0256 "Exosome complex exon... 133 1.2e-08 1
UNIPROTKB|G4MRK3 - symbol:MGG_16298 "Uncharacterized prot... 129 4.0e-08 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 129 4.3e-08 1
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 127 6.1e-08 1
UNIPROTKB|F1RH84 - symbol:EXOSC5 "Uncharacterized protein... 109 2.1e-06 1
CGD|CAL0000678 - symbol:orf19.81 species:5476 "Candida al... 114 2.1e-06 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 113 2.4e-06 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 111 4.6e-06 1
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 95 6.5e-06 2
ASPGD|ASPL0000064405 - symbol:AN7665 species:162425 "Emer... 108 3.2e-05 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 81 0.00083 2
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 68/142 (47%), Positives = 101/142 (71%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E KI K I +KA++EVI RPK+GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILD 144
MR + V+C ++ ++LD
Sbjct: 147 PMRALFCGVTCALDSDGTLMLD 168
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 68/147 (46%), Positives = 101/147 (68%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILDANQIQ 149
MR + V+C ++ ++LD Q
Sbjct: 147 PMRALFCGVACALDSDGTLVLDPTSKQ 173
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 67/141 (47%), Positives = 102/141 (72%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE S+ ++LSR DGS F QG T ++A +YGP E K+ K I D+A+VEV+ +PK GL
Sbjct: 35 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 94
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
V++R +E ++ TCE+ALL LHPR+S+ + +Q + D GSLLSCC+NAAC+AL+++G+
Sbjct: 95 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 154
Query: 124 MRYILAAVSCIINDKNEVILD 144
M + +V+C I+ + ++I D
Sbjct: 155 MSRLFCSVTCAISKEGQIITD 175
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 66/142 (46%), Positives = 100/142 (70%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E ++++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILD 144
MR + V+C ++ ++LD
Sbjct: 147 PMRALFCGVTCALDSDGNLVLD 168
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 67/142 (47%), Positives = 100/142 (70%)
Query: 3 SLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGL 62
SLR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGL 86
Query: 63 SFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 87 PGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGV 146
Query: 123 SMRYILAAVSCIINDKNEVILD 144
MR + V+C ++ ++LD
Sbjct: 147 PMRALFCGVTCALDPDGNLVLD 168
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 65/149 (43%), Positives = 103/149 (69%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR++ + N LSR DGSV++SQG T ++ ++ GP+E K Q ID + +E +RPK+G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
L V DR++E+ I+ E ALL+ HPR+ + + IQEL+D+GS+ +C +N ACLA++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQS 150
+ ++Y AAV IIN++ E +LD +Q ++
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSET 160
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 56/148 (37%), Positives = 90/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR L NIL R GS +SQG T V+A++YGP + +KA EVI++PKSG
Sbjct: 12 NQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
++ E ++K T +S + ++P T+ + IQ + D GSLL C INAAC AL+++G
Sbjct: 72 QIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I M+++ A+ C + + ++LD N+++
Sbjct: 132 IPMKHLAVAICCCLAENGYLVLDPNKLE 159
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 53/148 (35%), Positives = 89/148 (60%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ LR N L R+ GS ++QG T+V+A++YGP + +KAS+EV+++P +G
Sbjct: 12 NQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTG 71
Query: 62 LSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSG 121
Q++ E +K T +S L +HP T+ + +Q + + GSLL C INA C AL+ +G
Sbjct: 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAG 131
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
I ++++ A+ C + + EVILD N+ +
Sbjct: 132 IPLKHLAVAIGCGVLEDGEVILDTNKAE 159
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 50/137 (36%), Positives = 89/137 (64%)
Query: 9 SQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQDR 68
+++ ILSRSDGS + QG V+ + GP++ KI+ ++KA+VEV+ +P SG++ ++
Sbjct: 2 NRIGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEK 61
Query: 69 LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGS-LLSCCINAACLALINSGISMRYI 127
+ S I E A+ +PRT + ++IQ +++ G+ L+ IN A LAL+++GIS++YI
Sbjct: 62 MISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYI 121
Query: 128 LAAVSCIINDKNEVILD 144
A++C + KN++ D
Sbjct: 122 PCAINC--HWKNKITQD 136
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 45/141 (31%), Positives = 81/141 (57%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LRE++ +L+ L +DGS FSQG T + AS GP + K + ++++ +R G +
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDN 64
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGIS 123
+ + ++I ST +A+ L P T++ +T+ +QD GS+ + IN AC AL+++G+
Sbjct: 65 --KFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP 122
Query: 124 MRYILAAVSCIINDKNEVILD 144
+ V I+ K+E+I+D
Sbjct: 123 FETVFCGV-LIVRVKDELIID 142
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 54/162 (33%), Positives = 88/162 (54%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
+ +R++ +++ ++S++DGS +F G T V+A++YGP E + K+ K V+ S
Sbjct: 17 NEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQ-NKSQQKKNDHAVVLCEYSM 75
Query: 62 LSF-VQDRLKES----------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
F DR ++ VI+ T E+ +LT L P + + + +Q LQ G S CI
Sbjct: 76 AQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRSACI 135
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEV-ILDANQIQSN 151
NAA LAL ++GI MR + AVSC N +LD N ++ +
Sbjct: 136 NAATLALADAGIPMRDL--AVSCSAGYLNSTPLLDLNYVEDS 175
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 48/153 (31%), Positives = 91/153 (59%)
Query: 7 LKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLSFVQ 66
+++++ IL DGS F T V+ S+ GP+E K ++ + + ++E+I RP G++ +
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 67 DRLKESVIKSTCESALLTMLHPRTSVILTIQELQ---DQG--SL--LSCCINAACLALIN 119
+++ E +++ + +PR +T Q L+ D+ SL LSCCINAA LAL++
Sbjct: 63 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVD 122
Query: 120 SGISMRYILAAVS-CIINDKNEVILD--ANQIQ 149
+GI++ + A++ II D +++I+D A Q++
Sbjct: 123 AGIALNSMCASIPIAIIKDTSDIIVDPTAEQLK 155
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/161 (30%), Positives = 92/161 (57%)
Query: 2 DSLRELKSQLNIL-SRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFRPK 59
+ LR + ++N + SDGS QG T V+ ++ GP+E ++ + ++A++EV
Sbjct: 17 NELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNIA 76
Query: 60 SGLSFVQD-------RLKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
S +F + RL E + ++ T E +++ L+PRT++++ +Q L G +L+ I
Sbjct: 77 SFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVI 136
Query: 111 NAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
N+ LALI++GISM ++ VSC + D+ +LD N ++ +
Sbjct: 137 NSITLALIDAGISMYDYVSGVSCGLYDQTP-LLDVNNLEEH 176
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 46/157 (29%), Positives = 87/157 (55%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D N + D + ++
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD-NTALADLSHVE 177
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 45/146 (30%), Positives = 84/146 (57%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--IQKTIIDKASVEVIFRPKSG 61
LR++++++++ +++DGS QG T +A +YGP E + K++ D+A + + +
Sbjct: 22 LRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATF 81
Query: 62 LSFVQ------DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + DR + +K T E+A+LT L+PR+ + + ++ LQ G S C+NA
Sbjct: 82 STAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGNYSACVNA 141
Query: 113 ACLALINSGISMR-YILAAVSCIIND 137
A LAL+++GI MR Y+ A + + D
Sbjct: 142 ATLALVDAGIPMRDYVCACSAGFVED 167
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 44/155 (28%), Positives = 84/155 (54%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIF----- 56
LR +K +L + + DGS QG T V+A++YGP +AK +T +I+ + F
Sbjct: 23 LRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER 82
Query: 57 --RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
RP+ ++ +L ++ +A+ + L+PR+ + + ++ LQD G+ + +NAA
Sbjct: 83 KNRPRGDRKSLEFKL---YLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAAT 139
Query: 115 LALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
LALI++GI + + A + ++ N + D +Q +
Sbjct: 140 LALIDAGICLNEFIVACTASLSKSNIPLTDISQFE 174
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/157 (28%), Positives = 86/157 (54%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D + D + ++
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD-GTALADLSHVE 177
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/157 (28%), Positives = 86/157 (54%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D + D + ++
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD-GTALADLSHVE 177
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/157 (28%), Positives = 87/157 (55%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D + D + ++
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD-GTALADLSHVE 177
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/157 (28%), Positives = 87/157 (55%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ T E+A+LT LHPR+ + + +Q LQ G + C+NA
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D + D + ++
Sbjct: 142 ATLAVMDAGIPMRDFVCACSAGFVD-GTALADLSHVE 177
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 44/148 (29%), Positives = 76/148 (51%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--SG 61
+R + ++L + ++GS G T V+ ++YGP E K K I DK ++ + SG
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSG 78
Query: 62 LSFVQ----DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
L DR + ++ ES +LT PR+ + + + +Q GS L+ C+NA
Sbjct: 79 LERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATS 138
Query: 115 LALINSGISMRYILAAVSCIINDKNEVI 142
LAL ++GI M+ I +A +C + D ++
Sbjct: 139 LALADAGIPMKGIASAATCGVVDGKPIV 166
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 44/148 (29%), Positives = 76/148 (51%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPK--SG 61
+R + ++L + ++GS G T V+ ++YGP E K K I DK ++ + SG
Sbjct: 19 IRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSG 78
Query: 62 LSFVQ----DRLKESV---IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAAC 114
L DR + ++ ES +LT PR+ + + + +Q GS L+ C+NA
Sbjct: 79 LERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATS 138
Query: 115 LALINSGISMRYILAAVSCIINDKNEVI 142
LAL ++GI M+ I +A +C + D ++
Sbjct: 139 LALADAGIPMKGIASAATCGVVDGKPIV 166
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 43/157 (27%), Positives = 86/157 (54%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT--IIDKASVEVIFRPKSG 61
LR++++++ + +++DGS QG T +A +YGP E + ++ + D+A V + +
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATF 81
Query: 62 LSFVQDRL----KESV-----IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
+ + R ++S ++ E+A+LT LHPR+ + + +Q LQ G + + C+N
Sbjct: 82 STGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAACVNV 141
Query: 113 ACLALINSGISMRYILAAVSCIINDKNEVILDANQIQ 149
A LA++++GI MR + A S D + D + ++
Sbjct: 142 ATLAVLDAGIPMRDFVCACSAGFVD-GTALADLSHVE 177
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 45/161 (27%), Positives = 88/161 (54%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKA--SVEVIFRP 58
D +R + ++ I +GS G T V+ + GP E I+ K D+ +VE+
Sbjct: 20 DEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIAS 79
Query: 59 KSGLS----FVQDR---LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCIN 111
S + F DR L+ +++T E + T L+PR+ + + + LQD G++++ CIN
Sbjct: 80 FSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCIN 139
Query: 112 AACLALINSGISMR-YILAAVSCIINDKNEVILDANQIQSN 151
A LALI++GI ++ ++ + + I+ +++++LD N ++ +
Sbjct: 140 ATTLALIDAGIPVKDFVCCSTAGIV--ESDMLLDLNSLEES 178
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 134 (52.2 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 44/163 (26%), Positives = 82/163 (50%)
Query: 2 DSLRELKSQLNILSRS-DGSVIFSQGQTVVVASMYGPVEAKIQKTI-IDKA----SVEVI 55
+ LR +S +N + DGS QG ++ + GP E +++ + KA SV +
Sbjct: 20 NELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNIT 79
Query: 56 -FRP--KSGLSFVQDR----LKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
F +S S +R ++ S+++ ++ +L ++PRT + + I L+ G ++
Sbjct: 80 KFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLN-IYPRTVIDIEIHVLEQDGGIMGS 138
Query: 109 CINAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
IN LALI++GISM ++ +S + D +LD N ++ N
Sbjct: 139 LINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEEN 180
>GENEDB_PFALCIPARUM|PF14_0256 [details] [associations]
symbol:PF14_0256 "exosome complex exonuclease
rrp41, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 2 DSLRELKSQL---NILSRSDGSVIFSQGQTVVVASMYGPVEAKI--QKTIIDKASVEVIF 56
D R +K L N L DG F G T + A + GP E + +K ++ V
Sbjct: 20 DECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKCLV---KCNVFL 76
Query: 57 RPKSGLSFVQDRLKESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
P + L + + K++V I++ C +L L+ + + + + ++ G L +
Sbjct: 77 SPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERDGGLKAAA 136
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+N LALI++GI+++Y ++A S ++ +N +I+D NQ + N
Sbjct: 137 VNTCILALIDAGIAIKYFISA-SSVLYLQNNIIVDGNQFEVN 177
>UNIPROTKB|Q8ILI7 [details] [associations]
symbol:PF14_0256 "Exosome complex exonuclease rrp41,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 2 DSLRELKSQL---NILSRSDGSVIFSQGQTVVVASMYGPVEAKI--QKTIIDKASVEVIF 56
D R +K L N L DG F G T + A + GP E + +K ++ V
Sbjct: 20 DECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKCLV---KCNVFL 76
Query: 57 RPKSGLSFVQDRLKESV-------IKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCC 109
P + L + + K++V I++ C +L L+ + + + + ++ G L +
Sbjct: 77 SPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERDGGLKAAA 136
Query: 110 INAACLALINSGISMRYILAAVSCIINDKNEVILDANQIQSN 151
+N LALI++GI+++Y ++A S ++ +N +I+D NQ + N
Sbjct: 137 VNTCILALIDAGIAIKYFISA-SSVLYLQNNIIVDGNQFEVN 177
>UNIPROTKB|G4MRK3 [details] [associations]
symbol:MGG_16298 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001247 Pfam:PF01138 EMBL:CM001231 GO:GO:0043581
InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:XP_003710038.1
ProteinModelPortal:G4MRK3 EnsemblFungi:MGG_16298T0 GeneID:12985322
KEGG:mgr:MGG_16298 Uniprot:G4MRK3
Length = 260
Score = 129 (50.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 43/150 (28%), Positives = 76/150 (50%)
Query: 1 MDSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKS 60
M S E + ++ + R+DGS I+S V AS GP+EA+ + +A V+VI RP +
Sbjct: 1 MPSRGEPAALVSHIPRADGSAIYSHAGYTVTASANGPIEAQRRDEDPYEALVDVIVRPAA 60
Query: 61 GLSFVQDRLKESVIKSTCESALLTMLHPR--TSVILTIQELQD---------QGSL---- 105
G+ ++R ES++++T +L PR V+L ++ + Q +L
Sbjct: 61 GVGGTRERHLESLLQATLRQIILVKNFPRGLIQVVLQVKSSPENDYASTKLVQANLNLPI 120
Query: 106 LSCCINAACLALINSGISMRYILAAVSCII 135
+ + AA LAL+++ I +R A +C +
Sbjct: 121 IPALLQAAVLALLSAAIPLR---ATATCTV 147
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 129 (50.5 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/142 (26%), Positives = 72/142 (50%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK--------------IQKTII 47
+ LR L++Q++ S GS + G T ++ S++GP E + + + +
Sbjct: 22 NELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSSGAVVEVDV 81
Query: 48 DKASVEVIFRPK-SGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
+ A + R + +G S Q S ++S +S L T L+P +++ + + L GS+L
Sbjct: 82 NIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSVLSSDGSVL 141
Query: 107 SCCINAACLALINSGISMRYIL 128
+ +NA LAL+++GI M +L
Sbjct: 142 AAAVNACTLALVDAGIPMPGLL 163
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 127 (49.8 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 44/158 (27%), Positives = 74/158 (46%)
Query: 5 RELKSQLNILSRSDGSVIFSQGQTVVVASMYGP------VEAKIQKTIIDKASVEVIF-- 56
R L + +S DG G + V A++YGP ++ K + I V F
Sbjct: 24 RRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAG 83
Query: 57 ---RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAA 113
R + S + + + SV+ S +L +P + + + I+ L+ GS + CINAA
Sbjct: 84 ERRREQQRYSRLSEDISASVL-DVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAA 142
Query: 114 CLALINSGISMRYILAAVSC-IINDKNEVILDANQIQS 150
CLALI++ I+MR ++ + +I + V L +I S
Sbjct: 143 CLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS 180
>UNIPROTKB|F1RH84 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR015847
GO:GO:0051607 GO:GO:0000178 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00550000075002 EMBL:FP700139
Ensembl:ENSSSCT00000003348 Uniprot:F1RH84
Length = 109
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 105 LLSCCINAACLALINSGISMRYILAAVSCIINDKNEVILD 144
LL+CC+NAAC+AL+++G+ MR + V+C ++ +LD
Sbjct: 3 LLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTFMLD 42
>CGD|CAL0000678 [details] [associations]
symbol:orf19.81 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IEA] InterPro:IPR001247 CGD:CAL0000678
Pfam:PF01138 eggNOG:COG0689 KO:K12590 EMBL:AACQ01000392
RefSeq:XP_709982.1 STRING:Q59JP7 GeneID:3648418 KEGG:cal:CaO19.81
Uniprot:Q59JP7
Length = 269
Score = 114 (45.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 39/148 (26%), Positives = 75/148 (50%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVV--VASMYGPVEAKIQKTIIDKASVEVIFRPK 59
D EL N + + S S +++ + S+ GP+E K ++ + ++AS+E+ P
Sbjct: 18 DGSAELSIYNNNSNEASSSSSSSDDNSIIKLITSINGPIEPKQRQELPNRASLEINIYPS 77
Query: 60 SGLSFVQDRLKESVIKSTCES-ALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALI 118
GLS +++L E+ ++S ++ ++ +PR + ++IQ L GS S ++
Sbjct: 78 IGLSTTKEKLLENKLRSILQNNIIINYKYPRQLIQISIQFLISSGSGSSSSSSS------ 131
Query: 119 NSGISMRYILAAVSCIINDKNEVILDAN 146
N G SM L ++ +IN ++DAN
Sbjct: 132 NYG-SMMMNLLDLNALINCCYFALIDAN 158
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 113 (44.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 40/132 (30%), Positives = 64/132 (48%)
Query: 10 QLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID--KASVEVIFRPKSGLSFVQD 67
Q +S + GS G T V+ S++GP E+K D + + V + + + Q
Sbjct: 49 QTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQG 108
Query: 68 R-LKE--SVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISM 124
KE S++ E ++ P+T+V + L+ GS LS I+ A LAL ++GI M
Sbjct: 109 TDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMM 168
Query: 125 RYILAAVS--CI 134
++ AVS CI
Sbjct: 169 YDLITAVSVSCI 180
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 111 (44.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 38/152 (25%), Positives = 79/152 (51%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-KTIIDKASVEVIFR--PKS 60
+R + ++ ++S++ GS G T ++ S+YGP E + + +T + + FR P S
Sbjct: 42 VRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFS 101
Query: 61 GL---SFVQDRLKESVIKSTCESALL--TMLH--PRTSVILTIQELQDQGSLLSCCINAA 113
+ +++Q +E + +T +L LH PR+ + + + L++ GS+L+ + A
Sbjct: 102 CVKRGAWIQGS-EERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCA 160
Query: 114 CLALINSGISMRYILAAVSCIINDK-NEVILD 144
+AL ++GI M I+ + C + N ++D
Sbjct: 161 SMALADAGIEMYDIV--LGCTLRQSGNACLVD 190
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 95 (38.5 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 39 EAKIQKTIIDKASVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQE 98
EA++ +I+ A + R K G + + ++ + + L T L +++ ++
Sbjct: 85 EAEVVVSIV-VAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQHSTITFSLHV 143
Query: 99 LQDQGSLLSCCINAACLALINSGISMR-YILAAVS------CIINDKNEVILDANQ 147
L GSLL+ INAA LA +++GI M Y++A + ++ + +LD NQ
Sbjct: 144 LSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESADPLLDLNQ 199
Score = 58 (25.5 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEA 40
+ LR +Q+ + +DGS G T V+ + GP EA
Sbjct: 21 NELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEA 59
>ASPGD|ASPL0000064405 [details] [associations]
symbol:AN7665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:BN001304 EMBL:AACD01000130 RefSeq:XP_680934.1
ProteinModelPortal:Q5AVL5 STRING:Q5AVL5
EnsemblFungi:CADANIAT00000791 GeneID:2869404 KEGG:ani:AN7665.2
eggNOG:NOG329044 HOGENOM:HOG000185343 OMA:TRERHLE OrthoDB:EOG4D82G0
Uniprot:Q5AVL5
Length = 248
Score = 108 (43.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 35/148 (23%), Positives = 74/148 (50%)
Query: 9 SQLNILSRSDGSVIFSQGQTV--VVASMYGPVEAKIQKTII--DKASVEVIFRPKSGLSF 64
+ L+ LSRSDGS + T ++ S+ P+E ++ + ++A++EV +P +
Sbjct: 6 ADLHPLSRSDGSASYKCPFTGSNILGSVNAPIELPGRRDALKPEEATIEVFVKPGTAPGG 65
Query: 65 VQDRLKESVIKSTCESALLTML--HPRTSVILTIQELQDQG--------SLLSCCINAAC 114
V +R E +++S +L +PR V++T+ + +G LL ++ A
Sbjct: 66 VGERYVEGIVRSALGRVILGREKGYPRRGVVITLAIVGGEGVARGGSYLPLLPALLHTAT 125
Query: 115 LALINSGISMRYILAAVSCIINDKNEVI 142
LAL+++ + + L+A ++ ++I
Sbjct: 126 LALLSASVPLSVTLSATILAVDPAGKII 153
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 81 (33.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 66 QDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGISMR 125
++R ++ E A+ +PR + ++ L+D GS L+ + AA LAL ++GI M
Sbjct: 118 EERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGIEM- 176
Query: 126 YILAAVSCIINDK 138
Y L V C+ ++
Sbjct: 177 YDLV-VGCVEEER 188
Score = 56 (24.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAK 41
LR + ++ +LS++ GS G T V+ ++ GP +A+
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAE 73
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.132 0.353 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 151 151 0.00097 104 3 10 22 0.45 31
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 568 (60 KB)
Total size of DFA: 150 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.03u 0.09s 20.12t Elapsed: 00:00:14
Total cpu time: 20.04u 0.09s 20.13t Elapsed: 00:00:14
Start: Thu Aug 15 15:47:24 2013 End: Thu Aug 15 15:47:38 2013