RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15057
(151 letters)
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 84.4 bits (208), Expect = 2e-22
Identities = 60/119 (50%), Positives = 87/119 (73%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
LR + N+LSR DGS F QG T V+A +YGP E K+ K I +KA++EVI RPK GL
Sbjct: 4 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 63
Query: 64 FVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINAACLALINSGI 122
V ++ +E +I++TCE+ +L LHPRTS+ + +Q + D GSLL+CC+NAAC+AL+++G+
Sbjct: 64 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGV 122
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 71.4 bits (174), Expect = 3e-17
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIID---KASVEVIFRP 58
D LR +K +L +L +DGS IF G T +A++YGP E + + V P
Sbjct: 19 DELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTP 78
Query: 59 KS------GLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
S ++ VI+ ESA+L L PRT++ + + LQ + A
Sbjct: 79 FSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMA 138
Query: 113 ACLALINSGI 122
A LAL ++GI
Sbjct: 139 ASLALADAGI 148
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 69.5 bits (169), Expect = 2e-16
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK--------------TII 47
LR + ++ +LS++ GS G T V+ ++ GP +A+ + +
Sbjct: 6 TRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALR 65
Query: 48 DKASVEVIFRPKSGLSFVQDRLKE------SVIKSTCESALLTMLHPRTSVILTIQELQD 101
+ + P +G ++ E A+ +PR + ++ L+D
Sbjct: 66 GRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLED 125
Query: 102 QGSLLSCCINAACLALINSGI 122
GS L+ + AA LAL ++G+
Sbjct: 126 GGSALAAALTAAALALADAGV 146
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 137
Score = 63.3 bits (153), Expect = 4e-14
Identities = 19/135 (14%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 4 LRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQ-----------KTIIDKASV 52
+R L +++ + R GS +F +G+T ++ + Q + + +
Sbjct: 3 IRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFP 62
Query: 53 EVIFRPKSGLSFVQDRLKES--VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + R + + L T ++ + L GS +
Sbjct: 63 PYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSV 122
Query: 111 NAACLALINSGISMR 125
A+ ++L+N+G+ ++
Sbjct: 123 CASTMSLLNAGVPLK 137
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 151
Score = 62.6 bits (151), Expect = 7e-14
Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
D LR ++ + ++GSV+ G T V+ ++ + + +
Sbjct: 10 DQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPR 69
Query: 57 --------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
G + + +I + +AL ++ + +Q G +
Sbjct: 70 STGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTA 129
Query: 109 CINAACLALINSGISMR 125
I A +ALI++ ++
Sbjct: 130 SITGATVALIDALAVLK 146
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 62.6 bits (151), Expect = 7e-14
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKAS---VEVIFRP 58
D LR +K + ++L R+DGS G+ V+A+++GP E + + P
Sbjct: 15 DELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAP 74
Query: 59 KSGLSFVQDRLKES------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCINA 112
S + V K E+ ++ L PR+++ + ++ LQ + C+NA
Sbjct: 75 FSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNA 134
Query: 113 ACLALINSGI 122
A +AL+++G+
Sbjct: 135 ASVALVDAGV 144
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 60.7 bits (146), Expect = 4e-13
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK--TIIDKASVEVIFRPK 59
LR++++++ + +++DGS QG T +A +YGP E + + + D+A V +
Sbjct: 14 GELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSA 73
Query: 60 SGLSFVQDRLKES---------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSCCI 110
+ + + R ++ T E+A+LT LHPR+ + + +Q LQ G + C+
Sbjct: 74 TFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV 133
Query: 111 NAACLALINSGI 122
NAA LA++++GI
Sbjct: 134 NAATLAVLDAGI 145
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
aeolicus [TaxId: 63363]}
Length = 149
Score = 59.9 bits (144), Expect = 8e-13
Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
D LR + Q + L +GS + S G+T V+ + + + +
Sbjct: 8 DQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPR 67
Query: 57 --------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
G + + +I +A+ ++ + +Q G +
Sbjct: 68 ATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTATA 127
Query: 109 CINAACLALINSGISMR 125
I A +A+ ++ I +
Sbjct: 128 AITGAFVAVADAIIKLH 144
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 58.7 bits (141), Expect = 4e-12
Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 18/156 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
R + +S +DGS + G T V+ + A V +
Sbjct: 24 GEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLC 83
Query: 57 ----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
S + E+ E ++ + + L G++L
Sbjct: 84 SSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNIL 143
Query: 107 SCCINAACLALINSGISMRYI---LAAVSCIINDKN 139
C A AL N + I A + K+
Sbjct: 144 DACTFALLAALKNVQLPEVTINEETALAEVNLKKKS 179
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 56.6 bits (136), Expect = 2e-11
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVAS-MYGPVEAKIQKTIIDKASVEVIFRPKS 60
D R+++ N++ +++GS + G T VV P E V P +
Sbjct: 28 DEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLA 87
Query: 61 GLSFVQDRLKESVIKST---------CESALLTMLHPR-----TSVILTIQELQDQGSLL 106
+F E+ I+ E+ L+ L V + I L D G+LL
Sbjct: 88 SPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLL 147
Query: 107 SCCINAACLALINSGISMR 125
AA AL+N+ +
Sbjct: 148 DASALAAIAALMNTKVPAE 166
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 56.6 bits (136), Expect = 2e-11
Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 15/136 (11%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQK-----------TIIDKA 50
+ R ++ + +++S + GS G T ++ + + + A
Sbjct: 26 EDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASA 85
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKST----CESALLTMLHPRTSVILTIQELQDQGSLL 106
+ E R L + + ++ ++ + + + L+ G+L
Sbjct: 86 TPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLF 145
Query: 107 SCCINAACLALINSGI 122
A AL N+ I
Sbjct: 146 DAISIAVKAALFNTRI 161
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 54.8 bits (131), Expect = 1e-10
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 17/156 (10%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIF----- 56
R L L+ ++DGS + G T+V+A ++ + T + +
Sbjct: 35 TDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLA 94
Query: 57 ----------RPKSGLSFVQDRLKESVIKSTCESALLTMLHPRTSVILTIQELQDQGSLL 106
L+ V DR ++ +V L + L G++L
Sbjct: 95 YETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVL 154
Query: 107 SCCINAACLALINSGISMRYILAAVSCIINDKNEVI 142
C A+ AL N+ + + + I +KNEV+
Sbjct: 155 DACTLASVAALYNTKVYK--VEQHSNGISVNKNEVV 188
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 49.1 bits (116), Expect = 1e-08
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 13/136 (9%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSG 61
D LR + L+ +S +GSV+ + G T V+ + K + +
Sbjct: 9 DELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQ 68
Query: 62 LSFVQDRLKES-------------VIKSTCESALLTMLHPRTSVILTIQELQDQGSLLSC 108
+ Q + S +I + + ++ + +Q G +
Sbjct: 69 ATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTA 128
Query: 109 CINAACLALINSGISM 124
I A LA+ + +
Sbjct: 129 SITGAFLAMAIAIGKL 144
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 40.5 bits (94), Expect = 1e-05
Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 2 DSLRELKSQLNILSRSDGSVIFSQGQTVVVASMYGPVEAKIQKT-----------IIDKA 50
R ++ G I G+T V+ + + + + A
Sbjct: 30 YDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMA 86
Query: 51 SVEVIFRPKSGLSFVQDRLKESVIKSTCESALLTMLH----PRTSVILTIQELQDQGSLL 106
+ +S L +RL E ++++ ++ + + + L G+++
Sbjct: 87 APAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNII 146
Query: 107 SCCINAACLALINSGI 122
AA +AL +
Sbjct: 147 DAASIAAIVALCHFRR 162
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 149
Score = 40.1 bits (93), Expect = 2e-05
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 13/131 (9%)
Query: 5 RELKSQLNILSR-SDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEVIFRPKSGLS 63
R ++ + L+R + GS + +V S + + +V+V R +
Sbjct: 18 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 77
Query: 64 FV--------QDRLKESVIKSTCESALLTML----HPRTSVILTIQELQDQGSLLSCCIN 111
+ + + L V+ TI L IN
Sbjct: 78 IPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAIN 137
Query: 112 AACLALINSGI 122
AA + +G+
Sbjct: 138 AASASTQLAGL 148
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase
(MutT) {Escherichia coli [TaxId: 562]}
Length = 129
Score = 26.8 bits (58), Expect = 0.74
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 124 MRYILAAVSCIINDKNEVIL 143
M+ + AV I N+ NE+ +
Sbjct: 1 MKKLQIAVGIIRNENNEIFI 20
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 24.6 bits (53), Expect = 5.5
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 16 RSDGSVIFSQGQTVVVASMYGPVEAKIQKTIIDKASVEV 54
R + +G + +V + + ++ I + ++V
Sbjct: 261 RGKETADLHRGYSCLVPASTDSFTVESERGKIVRIYLKV 299
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 24.6 bits (52), Expect = 5.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 122 ISMRYILAAVSCIINDKNEVILDANQIQ 149
IS ++++A C I+D+ D Q
Sbjct: 32 ISPNWLVSAAHCYIDDRGFRYSDPTQWT 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.353
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,665
Number of extensions: 18181
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 21
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)