Query psy15059
Match_columns 101
No_of_seqs 109 out of 271
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:23:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 99.8 2.1E-21 4.5E-26 155.8 5.5 97 1-97 421-517 (613)
2 PF02913 FAD-oxidase_C: FAD li 98.6 1.3E-08 2.8E-13 73.3 2.3 87 1-87 62-155 (248)
3 TIGR00387 glcD glycolate oxida 98.1 6.7E-06 1.5E-10 65.7 5.5 82 1-86 234-320 (413)
4 PRK11230 glycolate oxidase sub 97.7 7.7E-05 1.7E-09 61.4 6.2 81 1-85 291-376 (499)
5 PLN02805 D-lactate dehydrogena 97.4 0.00049 1.1E-08 57.5 6.8 81 1-84 366-452 (555)
6 COG3286 Uncharacterized protei 92.4 0.58 1.3E-05 35.0 6.2 83 4-86 42-135 (204)
7 KOG2872|consensus 80.5 3.4 7.3E-05 33.1 4.5 50 18-100 208-257 (359)
8 PF09840 DUF2067: Uncharacteri 75.2 17 0.00037 26.7 6.7 84 3-86 38-132 (190)
9 KOG4179|consensus 46.8 7.9 0.00017 32.5 0.5 28 50-78 509-538 (568)
10 COG3010 NanE Putative N-acetyl 42.4 43 0.00093 25.5 3.8 72 3-85 156-228 (229)
11 COG1071 AcoA Pyruvate/2-oxoglu 42.4 64 0.0014 26.1 5.0 72 6-86 229-322 (358)
12 PF02662 FlpD: Methyl-viologen 41.8 37 0.00081 22.9 3.2 49 35-85 70-122 (124)
13 cd00248 Mth938-like Mth938-lik 38.6 17 0.00036 24.0 1.0 27 40-66 62-88 (109)
14 COG2723 BglB Beta-glucosidase/ 37.2 32 0.00069 28.8 2.6 52 48-99 61-121 (460)
15 PF14257 DUF4349: Domain of un 34.6 50 0.0011 24.6 3.2 76 10-85 59-143 (262)
16 PF01218 Coprogen_oxidas: Copr 33.5 53 0.0011 26.0 3.2 77 8-87 133-209 (296)
17 cd05560 Xcc1710_like Xcc1710_l 32.6 23 0.00051 23.4 1.0 48 39-98 61-108 (109)
18 cd00886 MogA_MoaB MogA_MoaB fa 30.5 97 0.0021 21.2 3.9 38 45-84 21-58 (152)
19 COG5405 HslV ATP-dependent pro 29.3 60 0.0013 23.8 2.7 55 2-61 47-103 (178)
20 PF00994 MoCF_biosynth: Probab 29.1 88 0.0019 21.0 3.4 38 46-85 19-56 (144)
21 PLN02873 coproporphyrinogen-II 28.9 1E+02 0.0022 24.1 4.1 77 8-87 111-187 (274)
22 cd07045 BMC_CcmK_like Carbon d 28.2 1E+02 0.0022 19.5 3.4 28 2-29 40-67 (84)
23 PRK13511 6-phospho-beta-galact 28.1 56 0.0012 26.9 2.7 52 48-99 56-115 (469)
24 TIGR00177 molyb_syn molybdenum 27.5 1.2E+02 0.0027 20.5 4.0 38 45-84 28-65 (144)
25 KOG0496|consensus 27.2 81 0.0018 27.6 3.5 62 11-72 143-209 (649)
26 PLN02269 Pyruvate dehydrogenas 26.3 2.1E+02 0.0046 22.9 5.6 73 6-87 228-322 (362)
27 TIGR03356 BGL beta-galactosida 26.0 90 0.002 25.3 3.5 51 48-98 56-114 (427)
28 COG3076 Uncharacterized protei 25.8 92 0.002 21.6 3.0 25 9-33 84-108 (135)
29 COG3915 Uncharacterized protei 25.0 55 0.0012 23.4 1.8 42 58-99 46-88 (155)
30 PRK09852 cryptic 6-phospho-bet 24.5 1.1E+02 0.0023 25.4 3.7 52 48-99 73-133 (474)
31 PRK05330 coproporphyrinogen II 24.1 1.3E+02 0.0028 23.9 3.9 76 8-86 138-213 (300)
32 PF04182 B-block_TFIIIC: B-blo 24.1 89 0.0019 19.0 2.5 21 40-61 30-50 (75)
33 PRK15014 6-phospho-beta-glucos 23.6 1.1E+02 0.0025 25.3 3.7 52 48-99 71-131 (477)
34 TIGR01233 lacG 6-phospho-beta- 23.1 76 0.0016 26.2 2.6 52 48-99 55-114 (467)
35 COG5470 Uncharacterized conser 22.9 96 0.0021 20.6 2.5 61 8-79 14-79 (96)
36 cd07947 DRE_TIM_Re_CS Clostrid 22.5 2E+02 0.0043 22.1 4.6 71 9-80 110-196 (279)
37 PF08410 DUF1737: Domain of un 22.4 96 0.0021 18.4 2.3 24 73-96 15-38 (54)
38 cd03522 MoeA_like MoeA_like. T 22.2 2.3E+02 0.0051 22.2 5.0 67 14-83 137-216 (312)
39 COG3737 Uncharacterized conser 22.2 41 0.00089 23.4 0.7 47 17-68 58-107 (127)
40 PLN02998 beta-glucosidase 21.9 87 0.0019 26.2 2.7 52 48-99 84-143 (497)
41 COG4047 Uncharacterized protei 21.9 1.9E+02 0.0041 22.2 4.2 89 9-98 19-148 (243)
42 PF07417 Crl: Transcriptional 21.7 57 0.0012 22.7 1.3 33 36-68 6-41 (125)
43 PF00487 FA_desaturase: Fatty 21.3 71 0.0015 22.0 1.8 22 65-86 228-249 (257)
44 PF13250 DUF4041: Domain of un 21.2 1E+02 0.0023 18.1 2.3 25 61-85 12-36 (56)
45 PF04304 DUF454: Protein of un 21.0 70 0.0015 19.1 1.5 20 38-57 3-23 (71)
46 PF00232 Glyco_hydro_1: Glycos 20.8 60 0.0013 26.4 1.5 52 48-99 60-120 (455)
47 smart00852 MoCF_biosynth Proba 20.5 2E+02 0.0043 19.0 3.8 37 45-83 19-55 (135)
48 PLN02849 beta-glucosidase 20.5 96 0.0021 26.0 2.7 52 48-99 81-140 (503)
49 PLN02814 beta-glucosidase 20.3 1.2E+02 0.0026 25.4 3.2 52 48-99 79-138 (504)
50 PRK12378 hypothetical protein; 20.3 1.8E+02 0.004 22.0 4.0 66 10-76 101-181 (235)
51 PF12738 PTCB-BRCT: twin BRCT 20.3 36 0.00077 19.6 0.1 17 16-32 13-29 (63)
No 1
>KOG1233|consensus
Probab=99.84 E-value=2.1e-21 Score=155.76 Aligned_cols=97 Identities=47% Similarity=0.887 Sum_probs=92.8
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 80 (101)
+++.|||+.++|+++.+++++|+.+++|+..|..+|+..|..+|.+.|+||+-+.+|++.|+|||++|||++..||++|+
T Consensus 421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK 500 (613)
T KOG1233|consen 421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK 500 (613)
T ss_pred hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEE
Q psy15059 81 KRLTRECTGRWLPVLVK 97 (101)
Q Consensus 81 ~al~~~~~~~g~~~~v~ 97 (101)
+++.++++++|..-.++
T Consensus 501 er~~rEck~~gv~~~~~ 517 (613)
T KOG1233|consen 501 ERMKRECKAQGVTHPVL 517 (613)
T ss_pred HHHHHHHHhcCCCcccc
Confidence 99999999999865543
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.65 E-value=1.3e-08 Score=73.25 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=69.3
Q ss_pred CEEEEeCChH-HhHhHHH-HHHHHHHHcCCCc----CC-CcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchH
Q psy15059 1 MALLVLGDPE-DVKNNED-KIYSIAKRYGGIP----AG-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV 73 (101)
Q Consensus 1 ~~~gfEG~~~-~V~~~~~-~~~~i~~~~GG~~----~G-~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~ 73 (101)
+++.|+|+++ .++.+.+ .+.++++++|+.. .+ +...+.|...++..||+++...+.|...+|+|+++||++++
T Consensus 62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~ 141 (248)
T PF02913_consen 62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP 141 (248)
T ss_dssp EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence 4688999984 4666666 7888888888764 12 22346777767777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15059 74 LLCINVKKRLTREC 87 (101)
Q Consensus 74 ~l~~~v~~al~~~~ 87 (101)
++++.+++.+.+..
T Consensus 142 ~~~~~~~~~~~~~~ 155 (248)
T PF02913_consen 142 EFLREIRALLREYG 155 (248)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred hHHHhhhhhhhhcc
Confidence 99999988777664
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.08 E-value=6.7e-06 Score=65.66 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=62.2
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCcC----C-CcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 75 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~----G-~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l 75 (101)
+++.|+|+++.++.+.+++.++++++|+... + +...+.|...++..|++++.. ...+ +.|+++||++++++
T Consensus 234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~ 309 (413)
T TIGR00387 234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA 309 (413)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence 3578999999999999999999999988532 1 234566877777778988742 2222 46799999999999
Q ss_pred HHHHHHHHHHH
Q psy15059 76 CINVKKRLTRE 86 (101)
Q Consensus 76 ~~~v~~al~~~ 86 (101)
++.+++.+++.
T Consensus 310 ~~~~~~~~~~~ 320 (413)
T TIGR00387 310 LRGIADIARKY 320 (413)
T ss_pred HHHHHHHHHHc
Confidence 99997776543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=97.73 E-value=7.7e-05 Score=61.37 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=58.5
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCcCC--C---cchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--E---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 75 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G--~---~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l 75 (101)
+++.|+|+++.++.+.+++.++|+++|+..+. + ...+.|..-+...|+++.. ..+++. .++++||++++.+
T Consensus 291 ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~ 366 (499)
T PRK11230 291 LLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGV 366 (499)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHH
Confidence 35788999999999999999999999975332 1 2234666533445787762 334443 4999999999999
Q ss_pred HHHHHHHHHH
Q psy15059 76 CINVKKRLTR 85 (101)
Q Consensus 76 ~~~v~~al~~ 85 (101)
++.+++...+
T Consensus 367 ~~~~~~~~~~ 376 (499)
T PRK11230 367 LEGIARLSQQ 376 (499)
T ss_pred HHHHHHHHHH
Confidence 9999775433
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.41 E-value=0.00049 Score=57.55 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=56.4
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCC--cCCCcc---hhhhhhhhhhh-hhhhhhhhhcccceeeeecccccCchHH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI--PAGESN---GRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~--~~G~~~---g~~W~~~rf~~-pYlRd~l~~~G~~~DTlETA~~Ws~~~~ 74 (101)
+++.|+|+++.++.+.+.+.+||+++|+. .+...+ .+.|. .|-.. |.+.. ...+....+.++++|||++++
T Consensus 366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e 442 (555)
T PLN02805 366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAE 442 (555)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHH
Confidence 46788999999999999999999999985 222222 34465 34433 22221 223444567899999999999
Q ss_pred HHHHHHHHHH
Q psy15059 75 LCINVKKRLT 84 (101)
Q Consensus 75 l~~~v~~al~ 84 (101)
+++.+++.+.
T Consensus 443 ~i~~~~~~~~ 452 (555)
T PLN02805 443 LISRSKKELD 452 (555)
T ss_pred HHHHHHHHHH
Confidence 9999977664
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.40 E-value=0.58 Score=34.95 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=58.8
Q ss_pred EEeCChHHhHhHHHHHHHHHHHcCCCcCCCcch-----hhhhhhhhhh--hhhhhhhhhccccee----eeecccccCch
Q psy15059 4 LVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYII--AYIRDFACDYYFIGD----SFETSVPWDKT 72 (101)
Q Consensus 4 gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~~rf~~--pYlRd~l~~~G~~~D----TlETA~~Ws~~ 72 (101)
=..|.++.++..-+.+.++.++.-+..-+...| .--...+=+. +-|+|.|.-+|+=++ -++|++|||.+
T Consensus 42 ~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~ev 121 (204)
T COG3286 42 NVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSEV 121 (204)
T ss_pred EEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHHH
Confidence 357888999999888888888766654333222 1111222223 289999999998764 58999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15059 73 VLLCINVKKRLTRE 86 (101)
Q Consensus 73 ~~l~~~v~~al~~~ 86 (101)
..+.+++-+..+.+
T Consensus 122 ~E~vreLse~~~E~ 135 (204)
T COG3286 122 VELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887766654
No 7
>KOG2872|consensus
Probab=80.55 E-value=3.4 Score=33.05 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEE
Q psy15059 18 KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVK 97 (101)
Q Consensus 18 ~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~ 97 (101)
++.+|..+++|-. ++. .| .+|..||||+ |.+++++.|.+.+.+.+-|
T Consensus 208 q~lQiFeSwageL-spe---~f--~e~s~PYl~~---------------------------I~~~Vk~rl~~~~~~~vPm 254 (359)
T KOG2872|consen 208 QALQIFESWAGEL-SPE---DF--EEFSLPYLRQ---------------------------IAEAVKKRLPELGLAPVPM 254 (359)
T ss_pred HHHHHHHHhcccC-CHH---HH--HHhhhHHHHH---------------------------HHHHHHHhhhhhcCCCCce
Confidence 4445665665543 222 23 3678899997 6666677777777888888
Q ss_pred Eee
Q psy15059 98 LLY 100 (101)
Q Consensus 98 ~~~ 100 (101)
.+|
T Consensus 255 i~f 257 (359)
T KOG2872|consen 255 ILF 257 (359)
T ss_pred EEE
Confidence 877
No 8
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=75.25 E-value=17 Score=26.69 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred EEEeCChHHhHhHHHHHHHHHHHcCCCcCCCcch-----hhhhh--hhhhhhhhhhhhhhcccce----eeeecccccCc
Q psy15059 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYM--LTYIIAYIRDFACDYYFIG----DSFETSVPWDK 71 (101)
Q Consensus 3 ~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~--~rf~~pYlRd~l~~~G~~~----DTlETA~~Ws~ 71 (101)
+=..|++.+++...+.+.++.+...+.+-+.+.. .--++ ..|..|-|-|.|--.|+=+ |.+.|+++|+.
T Consensus 38 I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~~ee 117 (190)
T PF09840_consen 38 IEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAPLEE 117 (190)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCCHHH
Confidence 3356888888888888888877665533222111 11111 3455568899998888765 58999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy15059 72 TVLLCINVKKRLTRE 86 (101)
Q Consensus 72 ~~~l~~~v~~al~~~ 86 (101)
+.++-+++-++....
T Consensus 118 v~~l~~~Lse~~~e~ 132 (190)
T PF09840_consen 118 VVELAERLSEIYKEL 132 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999997777643
No 9
>KOG4179|consensus
Probab=46.78 E-value=7.9 Score=32.46 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=19.6
Q ss_pred hhhhhhcccceeeeecccccCc--hHHHHHH
Q psy15059 50 RDFACDYYFIGDSFETSVPWDK--TVLLCIN 78 (101)
Q Consensus 50 Rd~l~~~G~~~DTlETA~~Ws~--~~~l~~~ 78 (101)
-.+--+.|++.|| |||..||+ ....+..
T Consensus 509 thytg~~gylsdt-ets~~w~~e~~~~~~~r 538 (568)
T KOG4179|consen 509 THYTGDSGYLSDT-ETSQQWDNETSETDWDR 538 (568)
T ss_pred eeecCCCccccCc-ccccccccccchhhhhh
Confidence 3445578999998 99999985 3444433
No 10
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=42.42 E-value=43 Score=25.54 Aligned_cols=72 Identities=7% Similarity=-0.066 Sum_probs=51.1
Q ss_pred EEEeC-ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHH
Q psy15059 3 LLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (101)
Q Consensus 3 ~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~ 81 (101)
-||++ ++.+.+.-..-++++++ .|-..+.+ +||+.|-+-....++|..+=|.=+|.| |...+.+...+
T Consensus 156 sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE--------Gr~~tP~~Ak~a~~~Ga~aVvVGsAIT--Rp~~It~~F~~ 224 (229)
T COG3010 156 SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE--------GRYNTPEQAKKAIEIGADAVVVGSAIT--RPEEITQWFVD 224 (229)
T ss_pred ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--------CCCCCHHHHHHHHHhCCeEEEECcccC--CHHHHHHHHHH
Confidence 36677 44556666666666665 66665554 599999888889999999999999987 66666665655
Q ss_pred HHHH
Q psy15059 82 RLTR 85 (101)
Q Consensus 82 al~~ 85 (101)
++++
T Consensus 225 ~ik~ 228 (229)
T COG3010 225 AIKS 228 (229)
T ss_pred HHhc
Confidence 5543
No 11
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=42.38 E-value=64 Score=26.11 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=48.1
Q ss_pred eCCh-HHhHhHHHHHHHHHHHcCCCcC------------CCc---------chhhhhhhhhhhhhhhhhhhhcccceeee
Q psy15059 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA------------GES---------NGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (101)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~------------G~~---------~g~~W~~~rf~~pYlRd~l~~~G~~~DTl 63 (101)
.|.+ -.|-...+.+.+.+++.+|-.+ .+. -.+.|.+ |=-.+-+|++|.+.|++.|
T Consensus 229 DG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se-- 305 (358)
T COG1071 229 DGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE-- 305 (358)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH--
Confidence 3444 3477778888899988888422 111 2255665 2223488999999999877
Q ss_pred ecccccCchHHHHHHHHHHHHHH
Q psy15059 64 ETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 64 ETA~~Ws~~~~l~~~v~~al~~~ 86 (101)
..+.++.+++++.+.++
T Consensus 306 ------e~~~~i~~e~~~~V~ea 322 (358)
T COG1071 306 ------EELEAIEAEAKAEVDEA 322 (358)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 56777777777777764
No 12
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=41.80 E-value=37 Score=22.94 Aligned_cols=49 Identities=4% Similarity=0.002 Sum_probs=38.9
Q ss_pred chhhhhhhhhhhhhhhhhhhhcccceeeeec----ccccCchHHHHHHHHHHHHH
Q psy15059 35 NGRRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 35 ~g~~W~~~rf~~pYlRd~l~~~G~~~DTlET----A~~Ws~~~~l~~~v~~al~~ 85 (101)
.|..|.+.|+ ..+++.|.+.|+=-|-+++ +..+.++.+..+++.+.|++
T Consensus 70 ~Gn~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 70 EGNYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hhhHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 3456777766 7899999999999999998 77888888888887766653
No 13
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=38.60 E-value=17 Score=24.05 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhhhhhhcccceeeeecc
Q psy15059 40 YMLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 40 ~~~rf~~pYlRd~l~~~G~~~DTlETA 66 (101)
...+|-.|-+++.|.++|+-+|.+.|.
T Consensus 62 ~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 62 AEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 344677788999999999999999997
No 14
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=37.23 E-value=32 Score=28.77 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=38.1
Q ss_pred hhhhhhhhcccceeeeecccccCchHH------HHH---HHHHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVL------LCI---NVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~------l~~---~v~~al~~~~~~~g~~~~v~~~ 99 (101)
|=.|.-+..-+...++=||+.|||+-+ .-+ +--..|-++|.++|+.++|-|-
T Consensus 61 YkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~ 121 (460)
T COG2723 61 YKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY 121 (460)
T ss_pred hHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 456766666777899999999999865 111 1234558889999999988763
No 15
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.60 E-value=50 Score=24.64 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=47.6
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCCCcc-------hhhhhhhhhhhh--hhhhhhhhcccceeeeecccccCchHHHHHHHH
Q psy15059 10 EDVKNNEDKIYSIAKRYGGIPAGESN-------GRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G~~~-------g~~W~~~rf~~p--YlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 80 (101)
+.++...+.+.++|+++||...-+.. +.......++.| .+.+++.+.+=......-.+.=.++..-|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 45778889999999999997543322 233344455665 566665555444444555554467777777776
Q ss_pred HHHHH
Q psy15059 81 KRLTR 85 (101)
Q Consensus 81 ~al~~ 85 (101)
++++.
T Consensus 139 arl~~ 143 (262)
T PF14257_consen 139 ARLKN 143 (262)
T ss_pred HHHHH
Confidence 66644
No 16
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=33.52 E-value=53 Score=25.99 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=53.9
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHH
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
.++++..-.+..+++|.+|+...= .-.++|-+.-|-.|...+.-===|+..|-|.+ -+|++.-++.++|-+++..+.
T Consensus 133 ~~eD~~~FH~~~K~~cd~~~~~~Y--p~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~-~~~e~~f~f~~~vg~~fl~aY 209 (296)
T PF01218_consen 133 FEEDAKHFHQTLKEACDPHDPSYY--PRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNT-GDFEKDFAFVKDVGEAFLPAY 209 (296)
T ss_dssp -HHHHHHHHHHHHHHHGGG-TTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEE-S-S-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcChHHH--HHHHhhchhhcchhhcCCCcCCceeeeccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 356788889999999999975321 24799999999888755443345778899987 567777777777777666653
No 17
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=32.61 E-value=23 Score=23.40 Aligned_cols=48 Identities=10% Similarity=-0.076 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy15059 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKL 98 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~ 98 (101)
....+|-.|-+++.+.++|+-+|.+.|..- -+.| +.|..+|.++...|
T Consensus 61 G~~~~~~~~~~~~~l~~~gi~vE~m~T~~A----crTy--------N~L~~EgR~V~Aal 108 (109)
T cd05560 61 GERQRFPPPALLAPLLARGIGVEVMDTQAA----CRTY--------NILMGEGRRVVAAL 108 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEECHHHH----HHHH--------HHHHhCCCcEEEEe
Confidence 344567678999999999999999999732 2222 33556666665554
No 18
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.46 E-value=97 Score=21.21 Aligned_cols=38 Identities=3% Similarity=-0.162 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHH
Q psy15059 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~ 84 (101)
+.|+|...|.+.|+ +..+..+--|+...+-++++++++
T Consensus 21 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~ 58 (152)
T cd00886 21 SGPALVELLEEAGH--EVVAYEIVPDDKDEIREALIEWAD 58 (152)
T ss_pred hHHHHHHHHHHcCC--eeeeEEEcCCCHHHHHHHHHHHHh
Confidence 35788888888884 666666666888777777765544
No 19
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=60 Score=23.82 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcCCC--cchhhhhhhhhhhhhhhhhhhhccccee
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE--SNGRRGYMLTYIIAYIRDFACDYYFIGD 61 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~--~~g~~W~~~rf~~pYlRd~l~~~G~~~D 61 (101)
+.||-|+.++.-...+...+-|+.+.|-..-. +..+.|+.- .|||. |-.+=+++|
T Consensus 47 laGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~D----k~lr~-LEAmllVad 103 (178)
T COG5405 47 LAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTD----KYLRK-LEAMLLVAD 103 (178)
T ss_pred EEEecccchhHHHHHHHHHHHHHHccCcHHHHHHHHHHhhhhh----hHHHH-HhhheeEeC
Confidence 67999999998888999999999998754322 456889965 45776 444434433
No 20
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.06 E-value=88 Score=20.95 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=27.5
Q ss_pred hhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHH
Q psy15059 46 IAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 46 ~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~ 85 (101)
.|+|...|.++|+ +.....+--|+...+-+++++++.+
T Consensus 19 ~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 19 GPFLAALLEELGI--EVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHHTTE--EEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--eeeEEEEECCCHHHHHHHHHhhhcc
Confidence 5889998988887 5555555558888888888555544
No 21
>PLN02873 coproporphyrinogen-III oxidase
Probab=28.88 E-value=1e+02 Score=24.13 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=55.3
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHH
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
.++++..-.+.++++|.+||-..= .-.++|-+.-|-.|...+.-==-|+..|.+.+ -+|.+.-.+.++|-+++..+.
T Consensus 111 ~~eD~~~FH~~~K~aCd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfDdln~-~~~e~~f~f~~~vg~afl~aY 187 (274)
T PLN02873 111 FEEDVKHFHGTYKDVCDKHDPEFY--PRFKKWCDDYFYIKHRGERRGLGGIFFDDLND-RDQEDLLAFATDVANSVVPAY 187 (274)
T ss_pred ChHHHHHHHHHHHHHHhccCchhh--HHHHHHHHHhcchhhcCCCCCCceeecCCCCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 356788888999999999986532 23789999988778755444445677888866 456777777777777666653
No 22
>cd07045 BMC_CcmK_like Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carbox
Probab=28.23 E-value=1e+02 Score=19.51 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.0
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCC
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~ 29 (101)
++.+.|+-..|+...+...+.++++|..
T Consensus 40 ~vii~GdvsaV~~Av~a~~~~~~~~~~~ 67 (84)
T cd07045 40 TVKITGDVAAVKAAVEAGAAAAERIGEL 67 (84)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHhccCcE
Confidence 5788999999999999999998887653
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=28.12 E-value=56 Score=26.88 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=38.9
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH------HHHH--HHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL------CINV--KKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l------~~~v--~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=+|..||||-+- -+.| ...+-++|.+.|+.++|-|.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 5667766667788999999999999763 1122 34567888899999988763
No 24
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.47 E-value=1.2e+02 Score=20.46 Aligned_cols=38 Identities=5% Similarity=-0.148 Sum_probs=28.3
Q ss_pred hhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHH
Q psy15059 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~ 84 (101)
+.|+|+..|.+.| ++..+..+--|+...+-+.+++++.
T Consensus 28 n~~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~ 65 (144)
T TIGR00177 28 NGPLLAALLEEAG--FNVSRLGIVPDDPEEIREILRKAVD 65 (144)
T ss_pred cHHHHHHHHHHCC--CeEEEEeecCCCHHHHHHHHHHHHh
Confidence 4689999999988 4566666666888888877766554
No 25
>KOG0496|consensus
Probab=27.18 E-value=81 Score=27.61 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=42.3
Q ss_pred HhHhHHHHHHH----HHHHcCCCcC-CCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCch
Q psy15059 11 DVKNNEDKIYS----IAKRYGGIPA-GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 72 (101)
Q Consensus 11 ~V~~~~~~~~~----i~~~~GG~~~-G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~ 72 (101)
+++...+.+.. +..+.||-.+ .+---|-..-.|+-.++-+..+.....++.++.|.++|=..
T Consensus 143 ~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 143 EMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 35555555554 7888898543 22112222455666788899999999999999999999543
No 26
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=26.29 E-value=2.1e+02 Score=22.87 Aligned_cols=73 Identities=11% Similarity=-0.076 Sum_probs=42.8
Q ss_pred eCCh-HHhHhHHHHHHHHHHHcCCCcC------------CCc---------chhhhhhhhhhhhhhhhhhhhcccceeee
Q psy15059 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA------------GES---------NGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (101)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~------------G~~---------~g~~W~~~rf~~pYlRd~l~~~G~~~DTl 63 (101)
.|.+ ..|....+.+.+.+++ +|-.+ +.. -.+.|...|=-+.-+|+.|.+.|++-+
T Consensus 228 DG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te-- 304 (362)
T PLN02269 228 DGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATE-- 304 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCH--
Confidence 3444 3455556666677777 66211 111 235666544334577899999999876
Q ss_pred ecccccCchHHHHHHHHHHHHHHH
Q psy15059 64 ETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 64 ETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
+.+.++-+++++.+.+++
T Consensus 305 ------~e~~~i~~e~~~~v~~a~ 322 (362)
T PLN02269 305 ------AELKDIEKEIRKEVDDAV 322 (362)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 455566666666655554
No 27
>TIGR03356 BGL beta-galactosidase.
Probab=25.99 E-value=90 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=37.2
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----HH---HHHHHHHHHHhcCCCCceEEE
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CI---NVKKRLTRECTGRWLPVLVKL 98 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----~~---~v~~al~~~~~~~g~~~~v~~ 98 (101)
|-.|.-+-..+.++++=.++.||++.+- -+ +--..+-+.|.+.|..++|-|
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 4466655666778999999999999664 11 224456777888999998877
No 28
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.75 E-value=92 Score=21.57 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=21.4
Q ss_pred hHHhHhHHHHHHHHHHHcCCCcCCC
Q psy15059 9 PEDVKNNEDKIYSIAKRYGGIPAGE 33 (101)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~ 33 (101)
.+..++|.++...++.+|||.+-|=
T Consensus 84 aeiIDaQ~e~l~~L~Ek~~~~YDGW 108 (135)
T COG3076 84 AELIDAQVEQLMPLAEKFDVEYDGW 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCc
Confidence 3558899999999999999998763
No 29
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.03 E-value=55 Score=23.44 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=25.0
Q ss_pred cceeeeecccccCchHHHHHHHH-HHHHHHHhcCCCCceEEEe
Q psy15059 58 FIGDSFETSVPWDKTVLLCINVK-KRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 58 ~~~DTlETA~~Ws~~~~l~~~v~-~al~~~~~~~g~~~~v~~~ 99 (101)
.-.+|+||-+||..-..=++.|+ +++-+-+...+....|+.|
T Consensus 46 l~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iAL 88 (155)
T COG3915 46 LPDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIAL 88 (155)
T ss_pred CCcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEe
Confidence 45699999999965554445452 3334444455555555543
No 30
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=24.50 E-value=1.1e+02 Score=25.44 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=36.7
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH------HHH---HHHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL------CIN---VKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l------~~~---v~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=.+..||++-+- -++ -...+-++|.+.|+.++|-|.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3566666666778999999999999431 111 134557778889999988764
No 31
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=24.15 E-value=1.3e+02 Score=23.88 Aligned_cols=76 Identities=7% Similarity=-0.048 Sum_probs=54.4
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHH
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~ 86 (101)
.++++..-.+..+++|.+||...= .-.++|-+.-|-.|...+.-===|+..|.+.+ -.|++.-++.++|-+++..+
T Consensus 138 ~~eD~~~FH~~~K~~Cd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfD~l~~-~~~e~~f~F~~~vg~~fl~a 213 (300)
T PRK05330 138 FEEDAVHFHRTAKDACDPFGPEYY--PRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS-PGFERDFAFTQAVGDAFLDA 213 (300)
T ss_pred ChHHHHHHHHHHHHHHhccChhhh--HHHHHHHHHhcChhhcCCCCCCCeeecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999997642 24789999988788754433344678888876 34666666677776666555
No 32
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=24.10 E-value=89 Score=19.00 Aligned_cols=21 Identities=14% Similarity=-0.197 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhhhhhccccee
Q psy15059 40 YMLTYIIAYIRDFACDYYFIGD 61 (101)
Q Consensus 40 ~~~rf~~pYlRd~l~~~G~~~D 61 (101)
.+.|. .+|..+.|.++|+++-
T Consensus 30 ~D~r~-i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 30 IDPRS-IFYRLKKLEKKGLIVK 50 (75)
T ss_pred CCchH-HHHHHHHHHHCCCEEE
Confidence 34443 5799999999999874
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=23.60 E-value=1.1e+02 Score=25.28 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH------HHH---HHHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL------CIN---VKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l------~~~---v~~al~~~~~~~g~~~~v~~~ 99 (101)
|=.|.-+-..+.++++=.|+.|||+-+- -++ -...+-++|.+.|+.++|-|.
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 4556656666778999999999999441 111 134567888899999988773
No 34
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.08 E-value=76 Score=26.18 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=37.9
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----HH-HH--HHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CI-NV--KKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----~~-~v--~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=+|..|||+.+- -+ .| ...+-++|.+.|+.++|-|.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~ 114 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH 114 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc
Confidence 4566666667778999999999999763 11 11 34567788889999888763
No 35
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.90 E-value=96 Score=20.64 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=37.0
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcC---CCc--chhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHH
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGGIPA---GES--NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINV 79 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~---G~~--~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v 79 (101)
+.+....-...+..+.++|||.++ |+- +--.|.-.|- .+.+ ++|+|.|-.|=|=|+-...+
T Consensus 14 D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~-------vviE----Fps~~~ar~~y~SpeYq~a~ 79 (96)
T COG5470 14 DPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRN-------VVIE----FPSLEAARDCYNSPEYQAAA 79 (96)
T ss_pred CHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccE-------EEEE----cCCHHHHHHHhcCHHHHHHH
Confidence 345667778889999999999876 221 1123765532 2222 26666677776666655444
No 36
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.53 E-value=2e+02 Score=22.11 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=37.7
Q ss_pred hHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhh--hhhhhhhhhhhh---hccc-----ceeeeecccccC------ch
Q psy15059 9 PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYML--TYIIAYIRDFAC---DYYF-----IGDSFETSVPWD------KT 72 (101)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~--rf~~pYlRd~l~---~~G~-----~~DTlETA~~Ws------~~ 72 (101)
.+++-...+.+.+.++++|-. +--.+...++.. -+-.+|+.+... +.|. ++||...++|++ ++
T Consensus 110 ~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v 188 (279)
T cd07947 110 REEAMEKYLEIVEEALDHGIK-PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSV 188 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHH
Confidence 344455556666777787643 211122223321 122246666433 2564 469999999995 44
Q ss_pred HHHHHHHH
Q psy15059 73 VLLCINVK 80 (101)
Q Consensus 73 ~~l~~~v~ 80 (101)
..+.++++
T Consensus 189 ~~l~~~l~ 196 (279)
T cd07947 189 PKIIYGLR 196 (279)
T ss_pred HHHHHHHH
Confidence 55555554
No 37
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=22.35 E-value=96 Score=18.41 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceE
Q psy15059 73 VLLCINVKKRLTRECTGRWLPVLV 96 (101)
Q Consensus 73 ~~l~~~v~~al~~~~~~~g~~~~v 96 (101)
.+++++|.++|++...=.|.|...
T Consensus 15 ~~fc~rVt~aL~~GW~l~GsP~~t 38 (54)
T PF08410_consen 15 SAFCHRVTEALNEGWQLYGSPTYT 38 (54)
T ss_pred HHHHHHHHHHHHcCCEecCCceEE
Confidence 578999999999988888888764
No 38
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=22.23 E-value=2.3e+02 Score=22.21 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCCC-------------cCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHH
Q psy15059 14 NNEDKIYSIAKRYGGI-------------PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 14 ~~~~~~~~i~~~~GG~-------------~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 80 (101)
...+++.++++..|=. ..|.+....-.... +.|.|+..|.+.|+ +..+...--|+...+.++++
T Consensus 137 ~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i~D~-~~~~l~~~L~~~G~--~v~~~~iv~Dd~~~I~~ai~ 213 (312)
T cd03522 137 ALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRIEDK-FGPVLRARLAALGV--ELVEQVIVPHDEAAIAAAIA 213 (312)
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcEEEh-HHHHHHHHHHHCCC--EEEEEEEcCCCHHHHHHHHH
Confidence 4566777777653332 13654432221122 35899999999985 44554444577777776665
Q ss_pred HHH
Q psy15059 81 KRL 83 (101)
Q Consensus 81 ~al 83 (101)
+++
T Consensus 214 ~~~ 216 (312)
T cd03522 214 EAL 216 (312)
T ss_pred HHh
Confidence 544
No 39
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=41 Score=23.44 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCC---CcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccc
Q psy15059 17 DKIYSIAKRYGG---IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVP 68 (101)
Q Consensus 17 ~~~~~i~~~~GG---~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~ 68 (101)
+...++++...- +.+|+ ..+.||--|-+|..+...|+.+|++-|...
T Consensus 58 e~f~~vl~~a~~~EilliGT-----G~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 58 EDFERVLAEAPDVEILLIGT-----GARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred HHHHHHHhcCCCceEEEEec-----CccccCCCHHHHHHHHHcCCccccccchhh
Confidence 344455544443 23465 567899888999999999999999999765
No 40
>PLN02998 beta-glucosidase
Probab=21.91 E-value=87 Score=26.15 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=38.4
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----HHH---HHHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CIN---VKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----~~~---v~~al~~~~~~~g~~~~v~~~ 99 (101)
|-+|.-+-.-+.++++=+|+.||||-+- -++ -...+-++|.+.|+.++|-|.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~ 143 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH 143 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 5666666666778999999999998763 111 134567888999999988773
No 41
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.85 E-value=1.9e+02 Score=22.17 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=52.4
Q ss_pred hHHhHhHHHHHHHHHHHcCCCcC-------------CCcchhhhhhhhh---hhhhhhhhhhh-----------------
Q psy15059 9 PEDVKNNEDKIYSIAKRYGGIPA-------------GESNGRRGYMLTY---IIAYIRDFACD----------------- 55 (101)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~-------------G~~~g~~W~~~rf---~~pYlRd~l~~----------------- 55 (101)
++.||.|.+.+..+.+.+|.... =++-|+.|..-+. +.--+||...+
T Consensus 19 Ee~vD~Qykav~~l~~~~~~~~~vrlaianaLvSYqLtgkGEewW~eF~kyf~~~~vr~i~ray~~fLp~s~fnrrlieq 98 (243)
T COG4047 19 EENVDPQYKAVSYLSKGIGSTKFVRLAIANALVSYQLTGKGEEWWWEFAKYFRGREVRDIYRAYKEFLPNSRFNRRLIEQ 98 (243)
T ss_pred HhhcCHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhccHHHHHHHHHHhccCCchhHHHHHH
Confidence 45699999999999999987421 1123555554332 11122222211
Q ss_pred ----cccceeeeecccccCchHHHHHHH---HHHHHHHHhcCCC-CceEEE
Q psy15059 56 ----YYFIGDSFETSVPWDKTVLLCINV---KKRLTRECTGRWL-PVLVKL 98 (101)
Q Consensus 56 ----~G~~~DTlETA~~Ws~~~~l~~~v---~~al~~~~~~~g~-~~~v~~ 98 (101)
.--+.+-+||- +|+|+..+|+.+ .++|..++...++ +.+|+-
T Consensus 99 KlrRi~ra~~fl~~L-~~~~~~~yyedm~~l~~~la~~lg~d~esKT~VFs 148 (243)
T COG4047 99 KLRRIRRAESFLETL-TEENIEVYYEDMSLLLEALARALGADRESKTVVFS 148 (243)
T ss_pred HHHHHHHHHHHHHHh-hhhhHHHHHhhHHHHHHHHHHHhCCCcccceEEEE
Confidence 11123334444 899999999876 5677788877666 455554
No 42
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=21.68 E-value=57 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred hhhhhhhhhhh--hhhhhhhh-hcccceeeeecccc
Q psy15059 36 GRRGYMLTYII--AYIRDFAC-DYYFIGDSFETSVP 68 (101)
Q Consensus 36 g~~W~~~rf~~--pYlRd~l~-~~G~~~DTlETA~~ 68 (101)
.+.-.-.+|.. ||||+.-- +-.+..|-|...|+
T Consensus 6 ~~~RLlk~f~alGPYlRE~qc~e~~ffFDCLaVCVn 41 (125)
T PF07417_consen 6 THSRLLKKFAALGPYLREGQCQEDRFFFDCLAVCVN 41 (125)
T ss_dssp -HHHHHHHHHTT-TTB-GGG-BTTEEEEEEEEEES-
T ss_pred chHHHHHHHHhhCchhcccccccCcEeeechhhhcc
Confidence 33444556754 99999754 44467788877765
No 43
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=21.31 E-value=71 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.2
Q ss_pred cccccCchHHHHHHHHHHHHHH
Q psy15059 65 TSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 65 TA~~Ws~~~~l~~~v~~al~~~ 86 (101)
-++||.+++++++.+++...+.
T Consensus 228 P~vp~~~l~~~~~~~~~~~~~~ 249 (257)
T PF00487_consen 228 PGVPWYNLPEAHPILKEVCPEY 249 (257)
T ss_pred CCcCHHHHHHHHHHHHHHHHHc
Confidence 3789999999999986665543
No 44
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=21.18 E-value=1e+02 Score=18.15 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=18.2
Q ss_pred eeeecccccCchHHHHHHHHHHHHH
Q psy15059 61 DSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 61 DTlETA~~Ws~~~~l~~~v~~al~~ 85 (101)
|..=.-++|+|++.+-+.++.+...
T Consensus 12 D~~i~kv~~~Ni~~~~~rI~ksf~~ 36 (56)
T PF13250_consen 12 DAAISKVKYNNIDTMEKRIEKSFEQ 36 (56)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHH
Confidence 3333458999999999888776543
No 45
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=20.98 E-value=70 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=13.4
Q ss_pred hhhh-hhhhhhhhhhhhhhcc
Q psy15059 38 RGYM-LTYIIAYIRDFACDYY 57 (101)
Q Consensus 38 ~W~~-~rf~~pYlRd~l~~~G 57 (101)
+|.. +|+-.||++|.-.+.|
T Consensus 3 ~Wl~~h~~~g~~I~~w~~~r~ 23 (71)
T PF04304_consen 3 RWLLNHRLFGPYIRNWEEHRG 23 (71)
T ss_pred HHHHcCchhHHHHHHHHHCCC
Confidence 4543 4777899998665544
No 46
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=20.77 E-value=60 Score=26.38 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=35.3
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-------HHHH--HHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-------CINV--KKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-------~~~v--~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=.+..|++|-+- -+.+ ...+-+.|.+.|..++|-|.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~ 120 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY 120 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee
Confidence 5677777777888999999999999544 2222 34457778888999998874
No 47
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.55 E-value=2e+02 Score=18.97 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHH
Q psy15059 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 83 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al 83 (101)
+.|+++..|.+.|.-+....+. + |+...+.+.+++.+
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v-~-Dd~~~I~~~l~~~~ 55 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIV-P-DDKEAIKEALREAL 55 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEe-C-CCHHHHHHHHHHHH
Confidence 4689999999999766555553 3 88877777775554
No 48
>PLN02849 beta-glucosidase
Probab=20.54 E-value=96 Score=25.95 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----H-HHH--HHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----C-INV--KKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----~-~~v--~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=+|..||||-+= - +.+ ...+-++|.+.|+.++|-|.
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~ 140 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF 140 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec
Confidence 5667766667788999999999998763 1 111 34567888999999988774
No 49
>PLN02814 beta-glucosidase
Probab=20.31 E-value=1.2e+02 Score=25.39 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=38.4
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----HH---HHHHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CI---NVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----~~---~v~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=+|..||||-+= -+ +-...+-++|.+.|+.++|-|.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~ 138 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY 138 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 5567666667788999999999999752 11 1234567888899999988763
No 50
>PRK12378 hypothetical protein; Provisional
Probab=20.30 E-value=1.8e+02 Score=21.99 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=35.7
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhh---hh-----hhhhhhhhhccccee-------eeecccccCchHH
Q psy15059 10 EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTY---II-----AYIRDFACDYYFIGD-------SFETSVPWDKTVL 74 (101)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf---~~-----pYlRd~l~~~G~~~D-------TlETA~~Ws~~~~ 74 (101)
+-...-...++.++++|||.. |+...-+|.-.|. .. --+-+.+++.|.-.| ++|--|+.+.+..
T Consensus 101 DN~nRt~~~vr~~f~K~gg~l-~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~aieaGa~~edv~~~~~~~~i~t~p~~~~~ 179 (235)
T PRK12378 101 DNVNRTVANVRSAFNKNGGNL-GTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVEDVEEEEGTITVYTDPTDFHK 179 (235)
T ss_pred CCHHHHHHHHHHHHhhcCCeE-CCCCceeeeeecceEEEeCCCCHHHHHHHHHhCCCCcccccccCCeEEEEECHHHHHH
Confidence 334556778889999999964 3322223433221 11 245566777776222 3445555444444
Q ss_pred HH
Q psy15059 75 LC 76 (101)
Q Consensus 75 l~ 76 (101)
+.
T Consensus 180 v~ 181 (235)
T PRK12378 180 VK 181 (235)
T ss_pred HH
Confidence 33
No 51
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=20.26 E-value=36 Score=19.55 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCCcCC
Q psy15059 16 EDKIYSIAKRYGGIPAG 32 (101)
Q Consensus 16 ~~~~~~i~~~~GG~~~G 32 (101)
+..+.+++..+||.+.+
T Consensus 13 ~~~l~~~i~~~Gg~~~~ 29 (63)
T PF12738_consen 13 RSQLRKLIEALGGKYSK 29 (63)
T ss_dssp CCHHHHHHHCTT-EEES
T ss_pred HHHHHHHHHHCCCEEec
Confidence 67788899999997543
Done!