Query psy15059
Match_columns 101
No_of_seqs 109 out of 271
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.4 2.9E-13 1E-17 111.0 8.2 96 1-96 395-490 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.2 2.1E-11 7.2E-16 100.8 8.3 92 2-93 467-558 (658)
3 1e8g_A Vanillyl-alcohol oxidas 97.5 0.00015 5E-09 58.9 6.5 83 2-85 354-449 (560)
4 1f0x_A DLDH, D-lactate dehydro 97.4 3.1E-05 1.1E-09 63.5 1.1 81 2-86 393-480 (571)
5 3pm9_A Putative oxidoreductase 97.1 0.0011 3.7E-08 53.0 6.8 80 1-86 291-377 (476)
6 2exr_A Cytokinin dehydrogenase 95.7 0.0015 5.3E-08 52.5 -0.2 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 94.1 0.1 3.6E-06 41.5 6.2 80 2-85 323-418 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 58.8 8.6 0.00029 28.8 3.5 35 1-35 274-309 (326)
9 2ozl_A PDHE1-A type I, pyruvat 54.6 42 0.0014 25.6 6.8 75 5-87 229-325 (365)
10 2fvt_A Conserved hypothetical 44.1 7.8 0.00027 25.8 1.1 49 39-99 76-124 (135)
11 1l7b_A DNA ligase; BRCT, autos 43.4 14 0.00048 22.8 2.2 45 1-48 11-68 (92)
12 3cpk_A Uncharacterized protein 41.9 21 0.00072 24.4 3.0 49 39-99 97-145 (150)
13 1qs0_A 2-oxoisovalerate dehydr 39.4 1E+02 0.0034 23.8 6.9 74 5-87 273-368 (407)
14 2gm2_A Conserved hypothetical 38.6 9.7 0.00033 25.2 0.9 49 39-99 73-121 (132)
15 1w1o_A Cytokinin dehydrogenase 38.0 9.4 0.00032 30.3 0.9 73 10-85 344-420 (534)
16 2ab1_A Hypothetical protein; H 37.6 10 0.00034 24.8 0.8 49 39-99 70-119 (122)
17 2fi9_A Outer membrane protein; 37.1 12 0.0004 24.6 1.0 46 42-99 80-125 (128)
18 3vej_A Ubiquitin-like protein 35.6 9.6 0.00033 20.8 0.4 16 64-79 3-18 (41)
19 4ha4_A Beta-galactosidase; TIM 33.3 21 0.00073 28.3 2.2 51 48-98 63-149 (489)
20 3l3e_A DNA topoisomerase 2-bin 30.5 37 0.0013 20.7 2.6 27 1-30 19-45 (107)
21 1uwi_A Beta-galactosidase; hyd 30.3 26 0.00088 27.8 2.2 50 49-98 64-148 (489)
22 1zzk_A Heterogeneous nuclear r 29.7 53 0.0018 19.2 3.1 26 3-28 54-79 (82)
23 2kxh_B Peptide of FAR upstream 28.4 64 0.0022 16.4 3.0 19 13-31 11-29 (31)
24 1use_A VAsp, vasodilator-stimu 26.6 59 0.002 17.9 2.6 21 72-92 24-44 (45)
25 1w85_A Pyruvate dehydrogenase 26.4 2.1E+02 0.0071 21.6 7.6 74 5-87 233-329 (368)
26 2kjw_A TS9, 30S ribosomal prot 25.5 46 0.0016 20.8 2.4 36 8-46 57-92 (96)
27 1vju_A Coproporphyrinogen III 24.7 71 0.0024 24.4 3.6 78 7-87 145-222 (309)
28 3zzp_A TS9, ribosomal protein 24.2 71 0.0024 19.0 3.0 21 8-28 57-77 (77)
29 1ydo_A HMG-COA lyase; TIM-barr 23.9 68 0.0023 23.7 3.4 65 12-82 120-198 (307)
30 4hhu_A OR280; engineered prote 23.7 74 0.0025 21.5 3.2 83 1-88 4-110 (170)
31 1cxq_A Avian sarcoma virus int 23.3 1.1E+02 0.0038 19.2 4.1 72 14-90 53-127 (162)
32 2cw6_A Hydroxymethylglutaryl-C 23.2 1.2E+02 0.0039 22.0 4.5 64 14-83 121-198 (298)
33 1txn_A Coproporphyrinogen III 22.3 78 0.0027 24.3 3.5 78 7-87 162-239 (328)
34 3rpj_A Curlin genes transcript 22.3 33 0.0011 23.2 1.2 38 31-68 6-46 (134)
35 3l46_A Protein ECT2; alternati 22.2 88 0.003 19.8 3.3 28 2-32 26-53 (112)
36 2d8m_A DNA-repair protein XRCC 21.0 56 0.0019 20.8 2.2 27 2-31 27-53 (129)
37 4e17_B Catenin alpha-1; four h 20.8 74 0.0025 17.1 2.3 26 65-90 6-35 (40)
38 1g3k_A ATP-dependent protease 20.5 83 0.0028 20.7 3.1 44 2-45 43-88 (174)
39 1mkz_A Molybdenum cofactor bio 20.5 1.5E+02 0.005 19.8 4.3 38 45-84 29-66 (172)
40 3vii_A Beta-glucosidase; cellu 20.3 30 0.001 27.6 0.9 52 48-99 68-128 (487)
41 3ble_A Citramalate synthase fr 20.2 1.1E+02 0.0038 22.7 4.0 67 14-83 137-211 (337)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.42 E-value=2.9e-13 Score=110.97 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=88.5
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 80 (101)
+++.|+|+++.|+.+.+++.++|+++||...++...+.|+..|+..||+|+.++++|.+.+++||++|||++++++++++
T Consensus 395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~ 474 (584)
T 2uuu_A 395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK 474 (584)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence 36789999999999999999999999998877788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceE
Q psy15059 81 KRLTRECTGRWLPVLV 96 (101)
Q Consensus 81 ~al~~~~~~~g~~~~v 96 (101)
+.+.+.+.++|.++.+
T Consensus 475 ~~l~~~~~~~g~~~~~ 490 (584)
T 2uuu_A 475 QTFVKHFKDQGIPAWI 490 (584)
T ss_dssp HHHHHHHHTTTCCEEE
T ss_pred HHHHhHHHhcCCeeEE
Confidence 9999999998887543
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.23 E-value=2.1e-11 Score=100.81 Aligned_cols=92 Identities=54% Similarity=1.058 Sum_probs=87.4
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHH
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~ 81 (101)
++.|||+.+.+..+.+.+.++++++|++..++..+++|+..||..||+|+...+.+...+++||++||++++++++++++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q psy15059 82 RLTRECTGRWLP 93 (101)
Q Consensus 82 al~~~~~~~g~~ 93 (101)
.+.+.+.+.+..
T Consensus 547 ~l~~~~~~~g~~ 558 (658)
T 4bby_A 547 RIRRECKEKGVQ 558 (658)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHHhcCcc
Confidence 999998887653
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.54 E-value=0.00015 Score=58.87 Aligned_cols=83 Identities=10% Similarity=-0.090 Sum_probs=60.4
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcC--CCcc--hhhhhhhhhhh----hhhhhh---hhhcccceeeeeccccc-
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~rf~~----pYlRd~---l~~~G~~~DTlETA~~W- 69 (101)
++.|+|+++.|+.+.+++.++|+++|+..+ .+.+ .+.|.. |+.. |+++.. .|..|=...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 2222 345664 7654 776653 23332235668999999
Q ss_pred -CchHHHHHHHHHHHHH
Q psy15059 70 -DKTVLLCINVKKRLTR 85 (101)
Q Consensus 70 -s~~~~l~~~v~~al~~ 85 (101)
++++++++.+++.+.+
T Consensus 433 ~~~l~~~~~~~~~~~~~ 449 (560)
T 1e8g_A 433 GEDAMMQYAVTKKRCQE 449 (560)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999999765544
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.43 E-value=3.1e-05 Score=63.48 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=59.7
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcC--CCcchhhhhhhhhhhh----hhhhhhhh-cccceeeeecccccCchHH
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~rf~~p----YlRd~l~~-~G~~~DTlETA~~Ws~~~~ 74 (101)
++-|+|+.... ..+.+.+++++++|... .+..+++|...||..+ ++|+...+ .| .+.++|||+||++++.
T Consensus 393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 45666766532 35666778888766433 4567788888999886 88887665 33 3689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15059 75 LCINVKKRLTRE 86 (101)
Q Consensus 75 l~~~v~~al~~~ 86 (101)
+ +.+++.+.+.
T Consensus 470 ~-~~~~~~l~~~ 480 (571)
T 1f0x_A 470 Y-EHLPPEIDSQ 480 (571)
T ss_dssp S-CCCCHHHHTT
T ss_pred H-HHHHHHHHhh
Confidence 9 9888777654
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.11 E-value=0.0011 Score=53.00 Aligned_cols=80 Identities=10% Similarity=-0.030 Sum_probs=57.8
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCcC---CC---cchhhhhhhhhhhh-hhhhhhhhcccceeeeecccccCchH
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKTV 73 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G~---~~g~~W~~~rf~~p-YlRd~l~~~G~~~DTlETA~~Ws~~~ 73 (101)
+++-|+|+++.++.+.+++.++|.++|+..- -. ...+-| +.|-..+ .++ ..|. ..+.++++|||+++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW-~~R~~~~~~~~----~~g~-~~~~Dv~vP~~~l~ 364 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFW-KLREEISPAQK----PEGG-SIKHDISVPVAAVP 364 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHH-HHHHTHHHHTG----GGCC-EECCEEECCGGGHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHH-HHHHHHHHHHh----hcCC-ceeEEEEeeHHHHH
Confidence 3678899888888889999999999887431 11 123445 4454443 333 3354 68999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy15059 74 LLCINVKKRLTRE 86 (101)
Q Consensus 74 ~l~~~v~~al~~~ 86 (101)
++.+.+++.+.+.
T Consensus 365 ~~~~~~~~~~~~~ 377 (476)
T 3pm9_A 365 QFIEQANAAVVAL 377 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888776
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=95.73 E-value=0.0015 Score=52.51 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=49.5
Q ss_pred eC-ChHHhHhHHHHHHHHHHHcCCCcCCCc----------chhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHH
Q psy15059 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 6 EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~ 74 (101)
+| +++.++.+.+.+.++++.+||....+. ....|...++..|.+.. . ++++++|||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 778899999999999999999755432 22336665554444331 1 3699999999999
Q ss_pred HHHHHHH
Q psy15059 75 LCINVKK 81 (101)
Q Consensus 75 l~~~v~~ 81 (101)
+.+.+++
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9988865
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=94.06 E-value=0.1 Score=41.54 Aligned_cols=80 Identities=11% Similarity=-0.102 Sum_probs=48.6
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhh----------------hcccceeeeec
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET 65 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~----------------~~G~~~DTlET 65 (101)
++.|+|++++++.+.+.+.++|+++|+..+.. ..+.+ +-...++|..+. ..+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEE---HHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEe---cccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 45599999999999999999999999864321 11111 112223333222 01222333334
Q ss_pred ccccCchHHHHHHHHHHHHH
Q psy15059 66 SVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 66 A~~Ws~~~~l~~~v~~al~~ 85 (101)
..+|++++++++.+++.+.+
T Consensus 399 p~~~~~l~~~~~~~~~~~~~ 418 (520)
T 1wvf_A 399 EARGSECKKQAAMAKRVLHK 418 (520)
T ss_dssp ESCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 55669999999888666544
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=58.83 E-value=8.6 Score=28.78 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.5
Q ss_pred CEEEEeC-ChHHhHhHHHHHHHHHHHcCCCcCCCcc
Q psy15059 1 MALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (101)
Q Consensus 1 ~~~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~ 35 (101)
+++-++| +.+++....+.+.+++++++|+.++.++
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 3566788 6788999999999999999999887753
No 9
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=54.59 E-value=42 Score=25.57 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=46.6
Q ss_pred EeC-ChHHhHhHHHHHHHHHHHcCCCcC-------------CC--------cchhhhhhhhhhhhhhhhhhhhcccceee
Q psy15059 5 VLG-DPEDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (101)
Q Consensus 5 fEG-~~~~V~~~~~~~~~i~~~~GG~~~-------------G~--------~~g~~W~~~rf~~pYlRd~l~~~G~~~DT 62 (101)
.+| +...|....+.+.+.+++.+|-.+ +. ..-+.|.+.+=-.+-+|+.|.+.|++-+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 466 356677777777777777777322 11 1125666544333477888999999876
Q ss_pred eecccccCchHHHHHHHHHHHHHHH
Q psy15059 63 FETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 63 lETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
+.+.++.+++++.+.+++
T Consensus 308 -------~~~~~i~~~~~~~v~~a~ 325 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAA 325 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 445566666666665554
No 10
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=44.13 E-value=7.8 Score=25.84 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEEe
Q psy15059 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~~ 99 (101)
....+|-.|-+|+.|.+.|+-+|.+.|.. .-+.| +.|..+|.++...|+
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~a----AcrTy--------NiL~~EgR~VaAaLi 124 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTGP----AIRTY--------NIMIGERRRVAAALI 124 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH----HHHHH--------HHHHHHTSCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH----HHHHH--------HHHHhCCCcEEEEEc
Confidence 34566777899999999999999999963 23333 234555556655554
No 11
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=43.40 E-value=14 Score=22.84 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=30.0
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCC------------cCCCcchhhhhhh-hhhhhh
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML-TYIIAY 48 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~------------~~G~~~g~~W~~~-rf~~pY 48 (101)
+++.|+|.-.. .+..+.+++.++||. ..|+.+|.|-.+. .+.+|-
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~I 68 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPT 68 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCC
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcE
Confidence 46788887544 578888999999994 3466667665544 234443
No 12
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=41.87 E-value=21 Score=24.40 Aligned_cols=49 Identities=12% Similarity=-0.086 Sum_probs=35.0
Q ss_pred hhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEEe
Q psy15059 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~~ 99 (101)
....+|-.|-++..|.++|+-+|.+.|..- -+.| +.|..+|.++.+.|+
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~aA----~rTy--------NiL~~EgRrVaaaLi 145 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQAA----ARTY--------NILMAEGRRVVVALL 145 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHHH----HHHH--------HHHHHTTCCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HHHH--------HHHHhCCCcEEEEEe
Confidence 345567778999999999999999998532 2333 335666777766664
No 13
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=39.40 E-value=1e+02 Score=23.82 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=44.5
Q ss_pred EeCCh-HHhHhHHHHHHHHHHHcCCCcC-------------CCcc--------hhhhhhhhhhhhhhhhhhhhcccceee
Q psy15059 5 VLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESN--------GRRGYMLTYIIAYIRDFACDYYFIGDS 62 (101)
Q Consensus 5 fEG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~~~--------g~~W~~~rf~~pYlRd~l~~~G~~~DT 62 (101)
.+|.+ ..|....+.+.+.+++.+|-.+ +..+ -+.|.+ |=-..-+|+.|.+.|++-+
T Consensus 273 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~- 350 (407)
T 1qs0_A 273 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSE- 350 (407)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCH-
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCH-
Confidence 45643 5677777777777777777321 1112 135664 3112377899999999876
Q ss_pred eecccccCchHHHHHHHHHHHHHHH
Q psy15059 63 FETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 63 lETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
+.+.++.+++++.+.+++
T Consensus 351 -------~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 351 -------EEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 345556666665555543
No 14
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=38.56 E-value=9.7 Score=25.21 Aligned_cols=49 Identities=4% Similarity=-0.087 Sum_probs=33.5
Q ss_pred hhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEEe
Q psy15059 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~~ 99 (101)
....+|-.|-+|+.|.+.|+-+|.+.|.. .-+.| +.|..+|.++...|+
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~a----AcrTy--------NiL~~EgR~VaAaLi 121 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNAA----AARTY--------NVLASEGRRVALAMI 121 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHHH----HHHHH--------HHHHHHTCCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH----HHHHH--------HHHHhCCCcEEEEEc
Confidence 44556777899999999999999999943 23333 334555656655554
No 15
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=38.05 E-value=9.4 Score=30.26 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=39.6
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCC-Ccchhhhhhhhhhhhh--hhhh-hhhcccceeeeecccccCchHHHHHHHHHHHHH
Q psy15059 10 EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G-~~~g~~W~~~rf~~pY--lRd~-l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~ 85 (101)
+.++...+.+.+.++.+|+.... ..+...|.+ ++..+. +|.. ++..+- -..++++|||+++++.+.+.+++.+
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHhh
Confidence 66777788888888777763222 111222221 222221 2221 121111 0238889999999999888665544
No 16
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=37.61 E-value=10 Score=24.79 Aligned_cols=49 Identities=8% Similarity=-0.093 Sum_probs=33.6
Q ss_pred hhhhhh-hhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEEe
Q psy15059 39 GYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 39 W~~~rf-~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~~ 99 (101)
....+| -.|-+++.|.++|+-+|.+.|.. .-+.| +.|..+|.++...|+
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~----A~rty--------N~L~~EgR~VaAal~ 119 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQ----AVKEY--------NALVAQGVRVGGVFH 119 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHH----HHHHH--------HHHHHTTCCEEEEEE
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHH----HHHHH--------HHHHhCCCcEEEEEe
Confidence 456677 56899999999999999998853 22333 335556666655543
No 17
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=37.08 E-value=12 Score=24.59 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=33.1
Q ss_pred hhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHHHhcCCCCceEEEe
Q psy15059 42 LTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 42 ~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~~g~~~~v~~~ 99 (101)
.+|-.|-+|+.|.++|+-+|.+.|.. .-+.| +.|..+|.++...|+
T Consensus 80 ~~~l~p~~~~~l~~~GI~vE~m~T~a----Acrty--------NiL~~EgR~VaaaLi 125 (128)
T 2fi9_A 80 LLRLPEELRVLLWEKRISSDTMSTGA----AVRTF--------NVLLAEDRAVAALLF 125 (128)
T ss_dssp CCCCCHHHHHHHHHTTCEEEEECHHH----HHHHH--------HHHHHTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHcCCEEEEeCHHH----HHHHH--------HHHHhCCCcEEEEEE
Confidence 57877999999999999999999942 22223 335666666666554
No 18
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=35.64 E-value=9.6 Score=20.81 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.5
Q ss_pred ecccccCchHHHHHHH
Q psy15059 64 ETSVPWDKTVLLCINV 79 (101)
Q Consensus 64 ETA~~Ws~~~~l~~~v 79 (101)
+-.+||+.+..|.++-
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999988654
No 19
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=33.29 E-value=21 Score=28.25 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=33.5
Q ss_pred hhhhhhhhcccceeeeecccccCchHHH-----------------------------HH-------HHHHHHHHHHhcCC
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----------------------------CI-------NVKKRLTRECTGRW 91 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l-----------------------------~~-------~v~~al~~~~~~~g 91 (101)
|=+|.-+-..+.++++=+|+.||||-+- -. +-...|-++|.+.|
T Consensus 63 y~eDi~l~~~mG~~~yRfSIsWsRI~P~G~~~~~~~~e~~gd~~~~~~~~~g~~~~~~~~~N~~Gl~fY~~lid~Ll~~G 142 (489)
T 4ha4_A 63 YRKFHDAAQAMGLTAARIGVEWSRIFPRPTFDVKVDAEVKGDDVLSVYVSEGALEQLDKMANRDAINHYREMFSDLRSRG 142 (489)
T ss_dssp HHHHHHHHHHTTCCEEEEECCHHHHCSSCCTTSCCEEEEETTEEEEEECCHHHHHHHHHHSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEeeccHHhcCcCCCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcC
Confidence 3444433344567999999999998430 00 11344577888889
Q ss_pred CCceEEE
Q psy15059 92 LPVLVKL 98 (101)
Q Consensus 92 ~~~~v~~ 98 (101)
+.++|-|
T Consensus 143 IeP~VTL 149 (489)
T 4ha4_A 143 ITFILNL 149 (489)
T ss_dssp CEEEEES
T ss_pred CeeeEee
Confidence 9998876
No 20
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=30.52 E-value=37 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=20.2
Q ss_pred CEEEEeCChHHhHhHHHHHHHHHHHcCCCc
Q psy15059 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP 30 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~ 30 (101)
+++.+.|... ..+..+.++++++||..
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADY 45 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEE
Confidence 3567777544 56788899999999954
No 21
>1uwi_A Beta-galactosidase; hydrolase, beta-glycosidase, glycosidase; 2.55A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1gow_A
Probab=30.33 E-value=26 Score=27.79 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=32.9
Q ss_pred hhhhhhhcccceeeeecccccCchHHH--------------------------------H-H--HHHHHHHHHHhcCCCC
Q psy15059 49 IRDFACDYYFIGDSFETSVPWDKTVLL--------------------------------C-I--NVKKRLTRECTGRWLP 93 (101)
Q Consensus 49 lRd~l~~~G~~~DTlETA~~Ws~~~~l--------------------------------~-~--~v~~al~~~~~~~g~~ 93 (101)
=+|.-+-..+.++++=+|+.|||+-+= - + +-...|-++|.+.|+.
T Consensus 64 ~eDi~l~~elG~~~yRfSIsWsRI~P~G~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~N~~Gl~fY~~lid~Ll~~GIe 143 (489)
T 1uwi_A 64 KTFHNNAQKMGLKIARLNSEWSRQFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLY 143 (489)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCCSCCCCCTTCCTTCSCCCCCCCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHCCCCCCccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcCCc
Confidence 344433344567999999999998420 0 0 1133457788888999
Q ss_pred ceEEE
Q psy15059 94 VLVKL 98 (101)
Q Consensus 94 ~~v~~ 98 (101)
++|-|
T Consensus 144 P~VTL 148 (489)
T 1uwi_A 144 FIQNM 148 (489)
T ss_dssp EEEES
T ss_pred ceEEe
Confidence 98876
No 22
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=29.71 E-value=53 Score=19.23 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEeCChHHhHhHHHHHHHHHHHcCC
Q psy15059 3 LLVLGDPEDVKNNEDKIYSIAKRYGG 28 (101)
Q Consensus 3 ~gfEG~~~~V~~~~~~~~~i~~~~GG 28 (101)
+-..|+++.|+..++.+.++.++.+|
T Consensus 54 v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 54 ITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999887765
No 23
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=28.44 E-value=64 Score=16.37 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHcCCCcC
Q psy15059 13 KNNEDKIYSIAKRYGGIPA 31 (101)
Q Consensus 13 ~~~~~~~~~i~~~~GG~~~ 31 (101)
.....++++|+++.||-..
T Consensus 11 adA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3446788999999998654
No 24
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.60 E-value=59 Score=17.92 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q psy15059 72 TVLLCINVKKRLTRECTGRWL 92 (101)
Q Consensus 72 ~~~l~~~v~~al~~~~~~~g~ 92 (101)
+..+-+.|.+|+++.+.+.|.
T Consensus 24 lqK~K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 24 LQKVKEEIIEAFVQELRKRGS 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 445566677777777777664
No 25
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=26.38 E-value=2.1e+02 Score=21.57 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=45.7
Q ss_pred EeC-ChHHhHhHHHHHHHHHHHcCCCc--------------CCCcc--------hhhhhhhhhhhhhhhhhhhhccccee
Q psy15059 5 VLG-DPEDVKNNEDKIYSIAKRYGGIP--------------AGESN--------GRRGYMLTYIIAYIRDFACDYYFIGD 61 (101)
Q Consensus 5 fEG-~~~~V~~~~~~~~~i~~~~GG~~--------------~G~~~--------g~~W~~~rf~~pYlRd~l~~~G~~~D 61 (101)
.+| +...|....+.+.+.+++.+|-. .+..+ -+.|.+ |=-.+-+|+.|.+.|++-+
T Consensus 233 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~ 311 (368)
T 1w85_A 233 VDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSE 311 (368)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCH
Confidence 456 35677777888888777766621 11112 356765 3222378899999999876
Q ss_pred eeecccccCchHHHHHHHHHHHHHHH
Q psy15059 62 SFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 62 TlETA~~Ws~~~~l~~~v~~al~~~~ 87 (101)
+.+.++.+++++.+.++.
T Consensus 312 --------~~~~~i~~~~~~~v~~a~ 329 (368)
T 1w85_A 312 --------EEENNVIEQAKEEIKEAI 329 (368)
T ss_dssp --------HHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 345566666666666554
No 26
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.49 E-value=46 Score=20.84 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=26.8
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhh
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYII 46 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~ 46 (101)
++++++...++..++..++||...-. +.|=..|+..
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~v---e~WG~R~LAY 92 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKV---EELGLRRLAY 92 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCC---EECCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEE---eccccccccc
Confidence 46789999999999999999976543 3565555543
No 27
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=24.74 E-value=71 Score=24.38 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=56.7
Q ss_pred CChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHH
Q psy15059 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 7 G~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~ 86 (101)
+.++++....+.+++.|.+||.-.= .-.++|-+--|-.|.-.+.-===|+..|-+.+ -+|++.-++.++|-+++..+
T Consensus 145 ~~~eD~~hFH~~~k~aCd~~~~~~Y--p~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~-~~~e~~faf~~~vg~afl~a 221 (309)
T 1vju_A 145 AVEEDCRDFHQVAQDLCKPFGADVY--ARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE-WPFEKCFEFVQAVGKGYMDA 221 (309)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCTTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHhcchhhcCCCCCCCeEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999985431 23799999988777644333334678899986 46777777778877777666
Q ss_pred H
Q psy15059 87 C 87 (101)
Q Consensus 87 ~ 87 (101)
+
T Consensus 222 Y 222 (309)
T 1vju_A 222 Y 222 (309)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=24.18 E-value=71 Score=19.04 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.1
Q ss_pred ChHHhHhHHHHHHHHHHHcCC
Q psy15059 8 DPEDVKNNEDKIYSIAKRYGG 28 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG 28 (101)
++++++...++...+..++||
T Consensus 57 ~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 57 DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999987
No 29
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=23.95 E-value=68 Score=23.65 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=38.6
Q ss_pred hHhHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhhhhhhhhhh---hhhccc----ceeeeecccccCchHHHHH
Q psy15059 12 VKNNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCI 77 (101)
Q Consensus 12 V~~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DTlETA~~Ws~~~~l~~ 77 (101)
+-.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||.-.+.| ..+.++.+
T Consensus 120 ~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv~ 193 (307)
T 1ydo_A 120 SLHILKQVNNDAQKANLTTRAYLSTVFGCP-----YEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVLE 193 (307)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTCBT-----TTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEecCC-----cCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHHH
Confidence 3344566667788888744 2221 2345444455544 356665 7899999888 55666666
Q ss_pred HHHHH
Q psy15059 78 NVKKR 82 (101)
Q Consensus 78 ~v~~a 82 (101)
.+++.
T Consensus 194 ~l~~~ 198 (307)
T 1ydo_A 194 ALLAR 198 (307)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66443
No 30
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.75 E-value=74 Score=21.46 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=47.0
Q ss_pred CEEEEeCCh-HHhHhHHHHHHHHHHHcCCCcC----CCc--------ch--hhh-------hhhhhhhh--hhhhhhhhc
Q psy15059 1 MALLVLGDP-EDVKNNEDKIYSIAKRYGGIPA----GES--------NG--RRG-------YMLTYIIA--YIRDFACDY 56 (101)
Q Consensus 1 ~~~gfEG~~-~~V~~~~~~~~~i~~~~GG~~~----G~~--------~g--~~W-------~~~rf~~p--YlRd~l~~~ 56 (101)
|.+.|+|++ +..+...+...+-++++-|... |.. |- ++= ...-|++. |- -+
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~-----im 78 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQ-----IM 78 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEE-----EE
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEE-----EE
Confidence 578999988 4456666666677888888532 111 11 110 11123332 21 12
Q ss_pred ccceeeeecccccCchHHHHHHHHHHHHHHHh
Q psy15059 57 YFIGDSFETSVPWDKTVLLCINVKKRLTRECT 88 (101)
Q Consensus 57 G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~ 88 (101)
|-....+..-..=++++.+-+++++.++++-+
T Consensus 79 gsgsgvm~i~f~gddlea~ekalkemirqark 110 (170)
T 4hhu_A 79 GSGSGVMVIVFEGDDLEALEKALKEMIRQARK 110 (170)
T ss_dssp CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred eCCceEEEEEEecCcHHHHHHHHHHHHHHHHh
Confidence 22223333334458999999999999988844
No 31
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=23.32 E-value=1.1e+02 Score=19.20 Aligned_cols=72 Identities=8% Similarity=0.028 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCCC-cCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCc--hHHHHHHHHHHHHHHHhcC
Q psy15059 14 NNEDKIYSIAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECTGR 90 (101)
Q Consensus 14 ~~~~~~~~i~~~~GG~-~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~--~~~l~~~v~~al~~~~~~~ 90 (101)
...+...++.+.+|-. .+=+..|.. |....+++++..+|+-....-...||+| ++..+..+++.+..-+.+.
T Consensus 53 ~v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~ 127 (162)
T 1cxq_A 53 AAQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGD 127 (162)
T ss_dssp HHHHHHHHHHHHHCCCSEEECCSCHH-----HHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCeEEEeCCchh-----hhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCcc
Confidence 3345556666677632 112233333 4344457888899988777777788988 7888888887777665544
No 32
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.20 E-value=1.2e+02 Score=22.01 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhhhhhhhhhh---hhhccc----ceeeeecccccCchHHHHHHH
Q psy15059 14 NNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINV 79 (101)
Q Consensus 14 ~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DTlETA~~Ws~~~~l~~~v 79 (101)
.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||...+.| ..+.++.+.+
T Consensus 121 ~~~~~~i~~a~~~G~~v~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l 194 (298)
T 2cw6_A 121 QRFDAILKAAQSANISVRGYVSCALGCP-----YEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAV 194 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTTCBT-----TTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCC-----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHH
Confidence 34455667778887643 2221 2344444454443 456665 7899998887 5566666666
Q ss_pred HHHH
Q psy15059 80 KKRL 83 (101)
Q Consensus 80 ~~al 83 (101)
++.+
T Consensus 195 ~~~~ 198 (298)
T 2cw6_A 195 MQEV 198 (298)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 5543
No 33
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=22.29 E-value=78 Score=24.32 Aligned_cols=78 Identities=5% Similarity=-0.150 Sum_probs=56.2
Q ss_pred CChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHHHH
Q psy15059 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 7 G~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~ 86 (101)
+.++++....+..++.|.+||.-.= .-.++|-+--|-.|.--+.-===|+..|-|.+ -+|++.-++.++|-+++..+
T Consensus 162 ~~~eD~~hFH~~~K~aCd~~~~~~Y--p~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~-~~~e~~faf~~~vg~afl~a 238 (328)
T 1txn_A 162 LYEEDGQLFHQLHKDALDKHDTALY--PRFKKWCDEYFYITHRKETRGIGGIFFDDYDE-RDPQEILKMVEDCFDAFLPS 238 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTHH--HHHEECGGGGGGGGTCCCCCCCEEEEEEEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHhcchhhcCCCCCCCeEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999985431 23689999988777643333334678899986 45777777778887777666
Q ss_pred H
Q psy15059 87 C 87 (101)
Q Consensus 87 ~ 87 (101)
+
T Consensus 239 Y 239 (328)
T 1txn_A 239 Y 239 (328)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=22.27 E-value=33 Score=23.19 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=24.9
Q ss_pred CCCcchhhhhhhhhhh--hhhhhhhh-hcccceeeeecccc
Q psy15059 31 AGESNGRRGYMLTYII--AYIRDFAC-DYYFIGDSFETSVP 68 (101)
Q Consensus 31 ~G~~~g~~W~~~rf~~--pYlRd~l~-~~G~~~DTlETA~~ 68 (101)
+.+++.+.-.-.+|.. ||||+.-- +-.+..|-|...|+
T Consensus 6 lp~~~~~~RLlk~f~alGPYlRE~qc~e~~ffFDCLaVCVn 46 (134)
T 3rpj_A 6 SSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVN 46 (134)
T ss_dssp --CCSCHHHHHHHHHTTCTTBCGGGC-CCEEEEEEEEEESC
T ss_pred cCCCCChhHHHHHHHHhCchhchhhccCCCEEEeeeeEecc
Confidence 3444555556667755 99999854 44577888887776
No 35
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=22.19 E-value=88 Score=19.79 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=21.0
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcCC
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G 32 (101)
++.|.|-.. ..++.+.+++..+||.+.+
T Consensus 26 ~Ic~sGf~~---~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 26 ILSFLGFSD---EEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp EECEESCCH---HHHHHHHHHHHHTTCEECC
T ss_pred EEEEeCCCH---HHHHHHHHHHHHcCCEECc
Confidence 566777543 3578888999999998765
No 36
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.99 E-value=56 Score=20.77 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=20.4
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcC
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~ 31 (101)
++.|.|.. ...+..+.+++..+||.+.
T Consensus 27 ~i~itG~~---~~~r~~l~~~i~~~Gg~v~ 53 (129)
T 2d8m_A 27 VVVLSGFQ---NPFRSELRDKALELGAKYR 53 (129)
T ss_dssp EEEEESCC---TTHHHHHHHHHHHTTEEEE
T ss_pred EEEEeCCC---cHHHHHHHHHHHHcCCEEe
Confidence 56777765 4467888899999999643
No 37
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.85 E-value=74 Score=17.09 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=17.6
Q ss_pred cccccC----chHHHHHHHHHHHHHHHhcC
Q psy15059 65 TSVPWD----KTVLLCINVKKRLTRECTGR 90 (101)
Q Consensus 65 TA~~Ws----~~~~l~~~v~~al~~~~~~~ 90 (101)
++.+|+ ++..-|++|++||+.-+.+.
T Consensus 6 s~~tr~~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 6 SSCTRDDRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 57788999999999887763
No 38
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=20.53 E-value=83 Score=20.73 Aligned_cols=44 Identities=7% Similarity=-0.180 Sum_probs=31.7
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCCCcCCC--cchhhhhhhhhh
Q psy15059 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE--SNGRRGYMLTYI 45 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~--~~g~~W~~~rf~ 45 (101)
.+++.|...+.....+.++.-++.|.+..... ...+.|++.||.
T Consensus 43 ~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (174)
T 1g3k_A 43 LAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRAL 88 (174)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTG
T ss_pred EEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhccCc
Confidence 57899999999888888888888887632111 345677776663
No 39
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.47 E-value=1.5e+02 Score=19.76 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=26.3
Q ss_pred hhhhhhhhhhhcccceeeeecccccCchHHHHHHHHHHHH
Q psy15059 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~ 84 (101)
+.|+|...|.+.|+-+... +.++ |+...+.+++++++.
T Consensus 29 n~~~l~~~L~~~G~~v~~~-~iv~-Dd~~~i~~~l~~a~~ 66 (172)
T 1mkz_A 29 SGHYLRDSAQEAGHHVVDK-AIVK-ENRYAIRAQVSAWIA 66 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEE-EEEC-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeEeEE-EEeC-CCHHHHHHHHHHHHh
Confidence 4689999999999754433 3344 788777777766554
No 40
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=20.27 E-value=30 Score=27.58 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=38.2
Q ss_pred hhhhhhhhcccceeeeecccccCchHHHH-------HHH--HHHHHHHHhcCCCCceEEEe
Q psy15059 48 YIRDFACDYYFIGDSFETSVPWDKTVLLC-------INV--KKRLTRECTGRWLPVLVKLL 99 (101)
Q Consensus 48 YlRd~l~~~G~~~DTlETA~~Ws~~~~l~-------~~v--~~al~~~~~~~g~~~~v~~~ 99 (101)
|-.|.-+-..+.++++=+|+.|||+-+-= +.+ ...|-++|.+.|+.++|-|.
T Consensus 68 y~EDi~Lm~elG~~~yRfSIsWsRI~P~G~~g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~ 128 (487)
T 3vii_A 68 YKEDVKILKELGAQVYRFSISWARVLPEGHDNIVNQDGIDYYNNLINELLANGIEPMVTMY 128 (487)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHSTTSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEeeCCHHHcCcCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 55676666666789999999999986541 111 35668888999999998774
No 41
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=20.15 E-value=1.1e+02 Score=22.70 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHcCCCcCCCcchhhhh-hhhhhhhhhhhh---hhhccc----ceeeeecccccCchHHHHHHHHHHH
Q psy15059 14 NNEDKIYSIAKRYGGIPAGESNGRRGY-MLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINVKKRL 83 (101)
Q Consensus 14 ~~~~~~~~i~~~~GG~~~G~~~g~~W~-~~rf~~pYlRd~---l~~~G~----~~DTlETA~~Ws~~~~l~~~v~~al 83 (101)
.....+.+.++++|-..-..-. .|- ..|.+..|+-+. +.++|. ++||.-.+.| ..+.++.+.+++.+
T Consensus 137 ~~~~~~v~~ak~~G~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv~~l~~~~ 211 (337)
T 3ble_A 137 TDVSFVIEYAIKSGLKINVYLE--DWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSP-EETFQGVDSLIQKY 211 (337)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE--THHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEEE--ECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCH-HHHHHHHHHHHHhc
Confidence 4455566677888864432211 111 234433444433 566775 8899999988 55666666665443
Done!