BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1506
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
AVY NADIYL DDPLSAVD HVGKH+FE+ I G LK+KTRILVTH + YL VD I+
Sbjct: 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVII 199
Query: 70 FLNN 73
++
Sbjct: 200 VMSG 203
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 233
Query: 73 NVS 75
S
Sbjct: 234 EGS 236
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73 NVS 75
S
Sbjct: 233 EGS 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73 NVS 75
S
Sbjct: 233 EGS 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73 NVS 75
S
Sbjct: 233 EGS 235
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 233
Query: 73 NVS 75
S
Sbjct: 234 EGS 236
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 201
Query: 72 NNVS 75
+ S
Sbjct: 202 HEGS 205
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 202
Query: 72 NNVS 75
+ S
Sbjct: 203 HEGS 206
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 156 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 215
Query: 73 NVS 75
S
Sbjct: 216 EGS 218
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72 NNVS 75
+ S
Sbjct: 233 HQGS 236
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72 NNVS 75
+ S
Sbjct: 233 HQGS 236
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72 NNVS 75
+ S
Sbjct: 233 HQGS 236
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 231
Query: 72 NNVS 75
+ S
Sbjct: 232 HQGS 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72 NNVS 75
+ S
Sbjct: 233 HQGS 236
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
N I +LD+ SA+D+ + + ++ + KD+T ++V H+L + H D+IV + N
Sbjct: 495 NPPILILDEATSALDLE-SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 550
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 23 LDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
LD+P+S +D + +F+ S + K ILVTH+L+YL+ +D I+ ++N
Sbjct: 164 LDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISN 214
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
K+ I + D+ S++D ++LF+ + K++T I++ H+L ++ + I+ LN
Sbjct: 172 KDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLN 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ KN I LLD+ SA+D ++L ++ + + +T +++ H+L + + + + L+
Sbjct: 497 ALLKNPKILLLDEATSALDAE-NEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLD 555
Query: 73 NVSKTS-GWVEEIL 85
T G EE+L
Sbjct: 556 QGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ KN I LLD+ SA+D ++L ++ + + +T +++ H L + + + + L+
Sbjct: 528 ALLKNPKILLLDEATSALDAE-NEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLD 586
Query: 73 NVSKTS-GWVEEIL 85
T G EE+L
Sbjct: 587 QGKITEYGKHEELL 600
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +N I LLD+ SA+D + + + + K +T I++ H+L + + D I+
Sbjct: 568 ALVRNPKILLLDEATSALDAE-SEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK 626
Query: 73 N 73
N
Sbjct: 627 N 627
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +N I LLD+ SA+D K + ++ + + +T I++ H+L + + D I ++
Sbjct: 1231 ALVRNPKILLLDEATSALDTESEK-VVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVS 1289
Query: 73 N 73
N
Sbjct: 1290 N 1290
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTH-QLQYLNHVDQIVFL 71
+ ++ LLD+P SA+D + + + ED I+ + K+ + V+H + + L + D+I +
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM 212
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58
NA+IY+LDDP+ A+D KH I LK+K ++++ +
Sbjct: 151 NAEIYVLDDPVVAIDED-SKHKVLKSILEILKEKGIVIISSR 191
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +++ I +LD+ SA+D + + + K++T +++ H+L + D+IV +
Sbjct: 494 ALLRDSPILILDEATSALDTE-SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
Query: 73 N 73
+
Sbjct: 553 D 553
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
++ + AD+Y+ D P S +D+ ++ + I LK+K I+V H L L+++ ++ +
Sbjct: 152 SLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKYVIVVDHDLIVLDYLTDLIHI 209
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRI--LVTHQLQYLNHV-DQIVFLN 72
K AD+Y+LD P S +D+ +++ I +++ + ++ H L +++ D+I+
Sbjct: 402 KEADLYVLDQPSSYLDVE-ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Query: 73 NVSKTSG 79
+ +G
Sbjct: 461 GEPEKAG 467
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
A+ D+ L D+P SA+D + + + KT ++VTH++ + HV ++FL
Sbjct: 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226
Query: 72 NNVSKTSGWVEE 83
+ G +EE
Sbjct: 227 HQ-----GKIEE 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++A + +LD+ SA+D + + + K+KT +++ H+L + D+I+ ++
Sbjct: 494 ALLRDAPVLILDEATSALDTE-SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVD 552
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +++ I +LD+ SA+D + + + K++T +++ H+L + D+IV +
Sbjct: 494 ALLRDSPILILDEATSALDTE-SERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVE 552
Query: 73 N 73
+
Sbjct: 553 D 553
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +L A +N I +LD+ +++D + + + + +K +T +++ H+L
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE-SESMVQKALDSLMKGRTTLVIAHRL 198
Query: 60 QYLNHVDQIVFL 71
+ D+I F+
Sbjct: 199 STIVDADKIYFI 210
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
Query: 16 KNADIYLLDDPLSAVDMH-------VGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQ- 67
++ADIYLLD+P + +D+ +HL E +KT ++V H + +++V
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKTALVVEHDVLMIDYVSDR 527
Query: 68 -IVF 70
IVF
Sbjct: 528 LIVF 531
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
Query: 16 KNADIYLLDDPLSAVDMH-------VGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQ- 67
++ADIYLLD+P + +D+ +HL E +KT ++V H + +++V
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKTALVVEHDVLMIDYVSDR 541
Query: 68 -IVF 70
IVF
Sbjct: 542 LIVF 545
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 92 GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDK 143
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D+ SA+D + +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 152 RALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 210
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D+ SA+D + +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 158 RALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 216
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 6 GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDK 57
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D+ SA+D + +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 154 RALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 212
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D+ SA+D + +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 154 RALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 212
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 89 GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 140
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 92 GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 92 GKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD 49
GKS +L CF +NAD Y+ + L+ + G+H+ ++ I +KD
Sbjct: 89 GKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKD 137
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 GKSSCQL--CFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR 52
GKS +L CF KNAD ++ + L + G+H+ E+ I +KD +
Sbjct: 92 GKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
+ K I LLD+ SA+D + + ++ ++T I+V H+L + + DQI+ + +
Sbjct: 205 ILKAPGIILLDEATSALDTS-NERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D SA+D + +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 158 RALVNNPKILIFDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 216
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
A+ N I L D+P A+D G+ + + +D KT ++VTH + ++I++L
Sbjct: 159 ALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
Query: 72 NN 73
+
Sbjct: 219 KD 220
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 16 KNADIYLLDDPLSAVDMH-------VGKHLFEDCISGFLKDKTRILVTHQLQYLNHV 65
++ADIYLLD+P + +D+ +HL E +KT ++V H + +++V
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEK------NEKTALVVEHDVLXIDYV 468
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
A+ N I L D P A+D G+ + + +D KT ++VTH + ++I++L
Sbjct: 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
Query: 72 NN 73
+
Sbjct: 219 KD 220
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 13 AVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
A+ + + +LD SA+D + V + L+E S +T +L+THQL I
Sbjct: 170 ALIRKPRLLILDQATSALDAGNQLRVQRLLYE---SPEWASRTVLLITHQLSLAERAHHI 226
Query: 69 VFLNNVS 75
+FL S
Sbjct: 227 LFLKEGS 233
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYLN 63
A+ +I LD+P VD +H+ IS ++K+ K ILVTH+L LN
Sbjct: 142 ALASQPEIVGLDEPFENVDA-ARRHV----ISRYIKEYGKEGILVTHELDMLN 189
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 AVYKNADIYLLDDPLSAVD 31
AV +NADI LLD+P + +D
Sbjct: 556 AVLRNADILLLDEPTNHLD 574
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 AVYKNADIYLLDDPLSAVD 31
AV +NADI LLD+P + +D
Sbjct: 562 AVLRNADILLLDEPTNHLD 580
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 AVYKNADIYLLDDPLSAVD 31
AV +NADI LLD+P + +D
Sbjct: 562 AVLRNADILLLDEPTNHLD 580
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
A+ +N I LLD+ SA+D + + + + + +T I++ H+L + + D I
Sbjct: 540 ALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVI 594
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
A+ +N I LLD+ SA+D + + + + + +T I++ H+L + + D I
Sbjct: 540 ALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVI 594
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-YLNHVDQIVFL 71
A+ N + ++D+P++ V + +F + K T +++ H+L LN++D + +
Sbjct: 167 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
Query: 72 NN 73
N
Sbjct: 227 FN 228
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-YLNHVDQIVFL 71
A+ N + ++D+P++ V + +F + K T +++ H+L LN++D + +
Sbjct: 167 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
Query: 72 NN 73
N
Sbjct: 227 FN 228
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIVFLN 72
++LLD+PLS +D + + + IS K +T I VTH Q++ + D+IV L+
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIVFLN 72
++LLD+PLS +D + + + IS K +T I VTH Q++ + D+IV L+
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
A+ N I L D P A+D G+ + + +D KT ++VTH + ++I++L
Sbjct: 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
Query: 72 NN 73
+
Sbjct: 219 KD 220
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57
A+ N I LLD+PLSA+D ++ E + L K ++ V H
Sbjct: 141 ALVTNPKILLLDEPLSALDPRTQENARE--MLSVLHKKNKLTVLH 183
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-YLNHVDQIVFL 71
A+ N + ++D P++ V + +F + K T +++ H+L LN++D + +
Sbjct: 167 ALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
Query: 72 NN 73
N
Sbjct: 227 FN 228
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69
+ AD+Y+ D+P S +D+ + + S K I V H L L+++ V
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFV 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,545,948
Number of Sequences: 62578
Number of extensions: 88103
Number of successful extensions: 265
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 70
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)