Query psy1506
Match_columns 85
No_of_seqs 226 out of 1675
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:24:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 9.9E-32 2.2E-36 172.6 8.1 85 1-85 138-224 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.7E-29 3.6E-34 165.8 9.2 85 1-85 141-226 (254)
3 COG1135 AbcC ABC-type metal io 100.0 6.8E-30 1.5E-34 170.8 7.3 85 1-85 143-230 (339)
4 COG1124 DppF ABC-type dipeptid 100.0 2.5E-29 5.5E-34 163.4 6.7 84 1-84 143-229 (252)
5 COG1136 SalX ABC-type antimicr 100.0 2.2E-28 4.8E-33 158.5 8.3 77 1-77 144-221 (226)
6 COG4555 NatA ABC-type Na+ tran 100.0 3.1E-28 6.8E-33 155.5 8.1 84 1-84 135-220 (245)
7 COG1120 FepC ABC-type cobalami 100.0 5.3E-28 1.1E-32 159.2 9.0 85 1-85 140-227 (258)
8 COG1122 CbiO ABC-type cobalt t 100.0 4.7E-28 1E-32 158.1 8.0 84 1-84 140-226 (235)
9 COG2274 SunT ABC-type bacterio 99.9 3.6E-28 7.8E-33 177.2 7.2 83 1-84 611-694 (709)
10 COG1125 OpuBA ABC-type proline 99.9 6.8E-28 1.5E-32 158.3 7.7 85 1-85 137-224 (309)
11 PRK11174 cysteine/glutathione 99.9 7.2E-28 1.6E-32 172.3 8.1 83 1-84 487-570 (588)
12 COG0444 DppD ABC-type dipeptid 99.9 1.7E-27 3.6E-32 159.8 8.2 85 1-85 155-242 (316)
13 TIGR02314 ABC_MetN D-methionin 99.9 1.6E-27 3.4E-32 162.6 8.0 84 1-84 142-228 (343)
14 KOG0055|consensus 99.9 1.1E-27 2.5E-32 179.8 7.9 84 1-85 491-575 (1228)
15 COG1116 TauB ABC-type nitrate/ 99.9 1.7E-27 3.8E-32 155.3 7.7 74 1-74 132-207 (248)
16 COG4175 ProV ABC-type proline/ 99.9 2.4E-27 5.3E-32 159.4 7.1 85 1-85 166-253 (386)
17 cd03261 ABC_Org_Solvent_Resist 99.9 5.1E-27 1.1E-31 152.2 7.9 84 1-84 138-224 (235)
18 TIGR01186 proV glycine betaine 99.9 4.7E-27 1E-31 161.2 8.1 84 1-84 131-217 (363)
19 PRK13537 nodulation ABC transp 99.9 5.8E-27 1.3E-31 157.6 8.3 84 1-84 140-225 (306)
20 TIGR01188 drrA daunorubicin re 99.9 7.2E-27 1.6E-31 156.6 8.5 84 1-84 126-211 (302)
21 PRK11650 ugpC glycerol-3-phosp 99.9 5.6E-27 1.2E-31 160.5 8.0 84 1-84 136-222 (356)
22 COG1127 Ttg2A ABC-type transpo 99.9 6.2E-27 1.3E-31 152.3 7.8 83 1-84 147-233 (263)
23 PRK15093 antimicrobial peptide 99.9 6.5E-27 1.4E-31 158.7 8.1 84 1-84 160-246 (330)
24 KOG0058|consensus 99.9 4.5E-27 9.8E-32 169.5 7.6 84 1-85 606-690 (716)
25 COG1117 PstB ABC-type phosphat 99.9 2E-27 4.4E-32 152.8 5.2 83 1-84 151-235 (253)
26 cd03260 ABC_PstB_phosphate_tra 99.9 1.4E-26 3.1E-31 149.3 9.1 83 1-84 143-227 (227)
27 COG1118 CysA ABC-type sulfate/ 99.9 6E-27 1.3E-31 156.7 7.4 85 1-85 139-226 (345)
28 COG1131 CcmA ABC-type multidru 99.9 9.4E-27 2E-31 155.9 8.4 83 1-83 138-223 (293)
29 KOG0055|consensus 99.9 4.4E-27 9.5E-32 176.7 7.5 84 1-85 1128-1212(1228)
30 COG1132 MdlB ABC-type multidru 99.9 5.9E-27 1.3E-31 167.3 7.8 84 1-85 467-551 (567)
31 COG1123 ATPase components of v 99.9 6.6E-27 1.4E-31 165.7 7.8 85 1-85 156-243 (539)
32 PRK11022 dppD dipeptide transp 99.9 9.2E-27 2E-31 157.8 8.1 84 1-84 155-241 (326)
33 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 7.5E-27 1.6E-31 170.1 8.2 81 1-84 617-698 (710)
34 cd03219 ABC_Mj1267_LivG_branch 99.9 1.4E-26 3E-31 150.0 8.3 84 1-84 145-230 (236)
35 PRK13643 cbiO cobalt transport 99.9 1.3E-26 2.8E-31 154.6 8.4 84 1-84 146-231 (288)
36 COG1123 ATPase components of v 99.9 1E-26 2.2E-31 164.7 8.3 84 1-84 431-517 (539)
37 PRK09473 oppD oligopeptide tra 99.9 1E-26 2.3E-31 157.8 7.9 84 1-84 163-249 (330)
38 PRK11176 lipid transporter ATP 99.9 8.2E-27 1.8E-31 166.6 7.8 83 1-84 482-565 (582)
39 PRK10790 putative multidrug tr 99.9 9.2E-27 2E-31 166.8 8.0 83 1-84 478-561 (592)
40 cd03256 ABC_PhnC_transporter A 99.9 1.4E-26 3.1E-31 150.2 8.2 83 1-83 146-231 (241)
41 TIGR03258 PhnT 2-aminoethylpho 99.9 9.7E-27 2.1E-31 159.6 7.8 84 1-84 139-226 (362)
42 PRK11432 fbpC ferric transport 99.9 1E-26 2.2E-31 159.0 7.7 84 1-84 138-224 (351)
43 COG4598 HisP ABC-type histidin 99.9 1.4E-26 3.1E-31 146.5 7.7 85 1-85 154-240 (256)
44 TIGR03375 type_I_sec_LssB type 99.9 9.9E-27 2.1E-31 169.2 8.0 83 1-84 603-686 (694)
45 PRK13651 cobalt transporter AT 99.9 1.6E-26 3.4E-31 155.5 8.4 84 1-84 167-252 (305)
46 cd03265 ABC_DrrA DrrA is the A 99.9 2.2E-26 4.8E-31 148.0 8.7 84 1-84 133-219 (220)
47 TIGR01288 nodI ATP-binding ABC 99.9 1.6E-26 3.4E-31 155.1 8.3 84 1-84 137-222 (303)
48 PRK13631 cbiO cobalt transport 99.9 1.8E-26 3.8E-31 156.1 8.6 84 1-84 178-263 (320)
49 PRK11308 dppF dipeptide transp 99.9 1.4E-26 3.1E-31 156.9 8.0 84 1-84 156-242 (327)
50 PRK13637 cbiO cobalt transport 99.9 1.7E-26 3.7E-31 154.0 8.2 84 1-84 146-232 (287)
51 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.2E-26 2.6E-31 168.5 8.1 81 1-84 590-671 (686)
52 PRK15079 oligopeptide ABC tran 99.9 1.5E-26 3.2E-31 157.1 7.9 84 1-84 163-249 (331)
53 PRK11614 livF leucine/isoleuci 99.9 1.9E-26 4.2E-31 149.6 8.1 84 1-84 139-224 (237)
54 PRK13536 nodulation factor exp 99.9 1.9E-26 4.1E-31 157.1 8.4 84 1-84 174-259 (340)
55 TIGR02315 ABC_phnC phosphonate 99.9 2.3E-26 4.9E-31 149.5 8.2 83 1-83 147-232 (243)
56 TIGR00960 3a0501s02 Type II (G 99.9 2.6E-26 5.6E-31 147.2 8.3 76 1-76 140-216 (216)
57 cd03296 ABC_CysA_sulfate_impor 99.9 2.2E-26 4.8E-31 149.6 8.1 84 1-84 138-224 (239)
58 PRK10851 sulfate/thiosulfate t 99.9 1.9E-26 4.1E-31 157.7 8.0 84 1-84 138-224 (353)
59 PRK13641 cbiO cobalt transport 99.9 3E-26 6.4E-31 152.8 8.6 83 1-83 147-231 (287)
60 TIGR03265 PhnT2 putative 2-ami 99.9 1.9E-26 4.1E-31 157.7 7.7 84 1-84 136-222 (353)
61 COG3840 ThiQ ABC-type thiamine 99.9 2.5E-26 5.4E-31 145.1 7.6 84 1-84 131-217 (231)
62 PRK11264 putative amino-acid A 99.9 3.8E-26 8.2E-31 149.1 8.5 83 1-83 146-230 (250)
63 PRK13650 cbiO cobalt transport 99.9 2.9E-26 6.3E-31 152.3 8.1 84 1-84 142-227 (279)
64 PRK09452 potA putrescine/sperm 99.9 2.7E-26 5.9E-31 158.0 8.2 84 1-84 146-232 (375)
65 PRK11000 maltose/maltodextrin 99.9 2.2E-26 4.8E-31 158.1 7.7 84 1-84 135-221 (369)
66 PRK13644 cbiO cobalt transport 99.9 3.6E-26 7.7E-31 151.6 8.4 84 1-84 138-222 (274)
67 cd03259 ABC_Carb_Solutes_like 99.9 4E-26 8.7E-31 146.1 8.4 78 1-78 132-211 (213)
68 PRK14257 phosphate ABC transpo 99.9 2.9E-26 6.4E-31 155.6 8.2 83 1-84 227-311 (329)
69 cd03218 ABC_YhbG The ABC trans 99.9 3.7E-26 8.1E-31 147.7 8.3 83 1-83 135-219 (232)
70 cd03226 ABC_cobalt_CbiO_domain 99.9 5.7E-26 1.2E-30 144.8 9.0 77 1-77 128-205 (205)
71 PRK13647 cbiO cobalt transport 99.9 4.3E-26 9.3E-31 151.2 8.7 82 1-82 140-223 (274)
72 PRK13634 cbiO cobalt transport 99.9 3.2E-26 6.9E-31 152.9 8.1 84 1-84 147-233 (290)
73 cd03252 ABCC_Hemolysin The ABC 99.9 3.5E-26 7.7E-31 148.3 8.1 83 1-84 140-223 (237)
74 TIGR01978 sufC FeS assembly AT 99.9 3.8E-26 8.2E-31 148.4 8.2 83 1-83 146-231 (243)
75 TIGR01187 potA spermidine/putr 99.9 2.8E-26 6.2E-31 155.3 7.9 84 1-84 102-188 (325)
76 PRK09536 btuD corrinoid ABC tr 99.9 3.6E-26 7.8E-31 158.5 8.6 84 1-84 141-226 (402)
77 PRK11153 metN DL-methionine tr 99.9 3E-26 6.6E-31 156.1 8.0 84 1-84 142-228 (343)
78 cd03224 ABC_TM1139_LivF_branch 99.9 4E-26 8.7E-31 146.6 8.2 84 1-84 134-219 (222)
79 COG4988 CydD ABC-type transpor 99.9 2.3E-26 5E-31 163.0 7.5 83 1-84 458-541 (559)
80 PRK13638 cbiO cobalt transport 99.9 4.9E-26 1.1E-30 150.5 8.6 83 1-83 138-222 (271)
81 PRK10619 histidine/lysine/argi 99.9 4.8E-26 1E-30 149.4 8.4 83 1-83 154-238 (257)
82 COG3842 PotA ABC-type spermidi 99.9 1E-26 2.3E-31 158.5 5.4 85 1-85 138-225 (352)
83 TIGR02770 nickel_nikD nickel i 99.9 3.7E-26 8E-31 147.9 7.8 84 1-84 127-213 (230)
84 TIGR01193 bacteriocin_ABC ABC- 99.9 3.3E-26 7.2E-31 166.8 8.3 82 1-84 613-695 (708)
85 COG3638 ABC-type phosphate/pho 99.9 2.5E-26 5.4E-31 149.2 6.8 84 1-84 149-235 (258)
86 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.8E-26 1E-30 146.0 7.9 76 1-76 142-218 (218)
87 TIGR00958 3a01208 Conjugate Tr 99.9 2.5E-26 5.5E-31 167.7 7.4 81 1-84 619-700 (711)
88 cd03246 ABCC_Protease_Secretio 99.9 7.3E-26 1.6E-30 141.3 8.5 76 1-76 98-173 (173)
89 cd03235 ABC_Metallic_Cations A 99.9 7.9E-26 1.7E-30 144.7 8.8 77 1-77 134-211 (213)
90 TIGR01184 ntrCD nitrate transp 99.9 6.7E-26 1.4E-30 146.9 8.6 81 1-81 116-199 (230)
91 PRK13657 cyclic beta-1,2-gluca 99.9 3.7E-26 8E-31 163.7 8.0 83 1-84 473-556 (588)
92 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 6.2E-26 1.3E-30 147.3 8.3 83 1-83 134-218 (236)
93 TIGR02211 LolD_lipo_ex lipopro 99.9 6.9E-26 1.5E-30 145.5 8.5 77 1-77 143-220 (221)
94 PRK09493 glnQ glutamine ABC tr 99.9 5.8E-26 1.3E-30 147.6 8.1 83 1-83 138-222 (240)
95 TIGR01842 type_I_sec_PrtD type 99.9 5.2E-26 1.1E-30 161.9 8.5 84 1-84 456-540 (544)
96 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5E-26 1.1E-30 150.5 7.9 84 1-84 162-248 (269)
97 COG3839 MalK ABC-type sugar tr 99.9 3E-26 6.4E-31 155.6 6.9 85 1-85 135-222 (338)
98 PRK13649 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 150.5 8.3 84 1-84 147-232 (280)
99 PRK13636 cbiO cobalt transport 99.9 5.9E-26 1.3E-30 151.1 8.1 84 1-84 143-229 (283)
100 PRK14245 phosphate ABC transpo 99.9 6.2E-26 1.3E-30 148.3 8.1 83 1-84 148-232 (250)
101 TIGR03415 ABC_choXWV_ATP choli 99.9 5.6E-26 1.2E-30 156.7 8.2 84 1-84 166-252 (382)
102 PRK11701 phnK phosphonate C-P 99.9 6.7E-26 1.4E-30 148.8 8.2 84 1-84 153-239 (258)
103 TIGR02203 MsbA_lipidA lipid A 99.9 3.9E-26 8.5E-31 162.6 7.7 83 1-84 471-554 (571)
104 cd03258 ABC_MetN_methionine_tr 99.9 6.2E-26 1.3E-30 146.8 7.9 84 1-84 142-228 (233)
105 PRK11607 potG putrescine trans 99.9 5E-26 1.1E-30 156.8 7.8 84 1-84 151-237 (377)
106 PRK13646 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 151.2 8.0 84 1-84 147-233 (286)
107 cd03257 ABC_NikE_OppD_transpor 99.9 9.8E-26 2.1E-30 145.2 8.6 78 1-78 147-226 (228)
108 cd03225 ABC_cobalt_CbiO_domain 99.9 8.1E-26 1.8E-30 144.4 8.1 75 1-75 136-211 (211)
109 PRK11831 putative ABC transpor 99.9 6.5E-26 1.4E-30 149.9 7.8 84 1-84 145-231 (269)
110 cd03216 ABC_Carb_Monos_I This 99.9 1.7E-25 3.6E-30 138.8 9.2 77 1-77 84-161 (163)
111 TIGR02769 nickel_nikE nickel i 99.9 8.3E-26 1.8E-30 149.0 8.2 84 1-84 152-238 (265)
112 PRK11160 cysteine/glutathione 99.9 6.7E-26 1.4E-30 162.3 8.2 83 1-84 477-560 (574)
113 cd03293 ABC_NrtD_SsuB_transpor 99.9 1E-25 2.2E-30 144.9 8.2 78 1-78 133-214 (220)
114 PRK11300 livG leucine/isoleuci 99.9 9.4E-26 2E-30 147.6 8.2 83 1-83 155-240 (255)
115 PRK11144 modC molybdate transp 99.9 6.5E-26 1.4E-30 154.9 7.8 84 1-84 130-216 (352)
116 PRK11231 fecE iron-dicitrate t 99.9 1.1E-25 2.4E-30 147.6 8.5 84 1-84 140-225 (255)
117 PRK13645 cbiO cobalt transport 99.9 8.7E-26 1.9E-30 150.5 8.1 83 1-83 152-237 (289)
118 cd03289 ABCC_CFTR2 The CFTR su 99.9 8.8E-26 1.9E-30 150.2 8.1 83 1-84 140-223 (275)
119 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-25 3E-30 143.1 8.7 78 1-78 128-206 (208)
120 TIGR00972 3a0107s01c2 phosphat 99.9 9.4E-26 2E-30 147.2 8.1 82 1-83 146-229 (247)
121 PRK14268 phosphate ABC transpo 99.9 1.1E-25 2.3E-30 147.9 8.2 83 1-84 156-240 (258)
122 TIGR02142 modC_ABC molybdenum 99.9 8.8E-26 1.9E-30 154.3 8.0 84 1-84 133-219 (354)
123 TIGR02673 FtsE cell division A 99.9 1.2E-25 2.7E-30 143.8 8.2 75 1-75 139-214 (214)
124 PRK09580 sufC cysteine desulfu 99.9 1.4E-25 3E-30 146.2 8.6 82 1-82 147-231 (248)
125 PRK10070 glycine betaine trans 99.9 8.6E-26 1.9E-30 156.6 8.0 84 1-84 166-252 (400)
126 PRK13652 cbiO cobalt transport 99.9 1.2E-25 2.6E-30 149.2 8.4 84 1-84 139-225 (277)
127 PRK10895 lipopolysaccharide AB 99.9 1.3E-25 2.8E-30 146.0 8.4 84 1-84 139-224 (241)
128 PRK14273 phosphate ABC transpo 99.9 1.1E-25 2.4E-30 147.4 8.1 83 1-84 152-236 (254)
129 PRK13635 cbiO cobalt transport 99.9 1.2E-25 2.5E-30 149.5 8.2 83 1-83 142-226 (279)
130 PRK14250 phosphate ABC transpo 99.9 1.2E-25 2.7E-30 146.4 8.2 84 1-84 133-219 (241)
131 TIGR03410 urea_trans_UrtE urea 99.9 1.4E-25 3E-30 145.0 8.3 84 1-84 133-219 (230)
132 PRK14242 phosphate transporter 99.9 1.1E-25 2.5E-30 147.2 8.0 82 1-83 151-234 (253)
133 PRK13633 cobalt transporter AT 99.9 1.1E-25 2.5E-30 149.5 8.0 84 1-84 146-231 (280)
134 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.1E-25 2.5E-30 146.5 7.8 83 1-83 137-222 (242)
135 cd03263 ABC_subfamily_A The AB 99.9 1.6E-25 3.6E-30 143.7 8.4 83 1-84 135-219 (220)
136 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.5E-25 3.2E-30 145.5 8.2 82 1-83 141-223 (238)
137 cd03301 ABC_MalK_N The N-termi 99.9 2E-25 4.3E-30 142.8 8.6 78 1-78 132-211 (213)
138 PRK13639 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 148.5 8.4 84 1-84 139-224 (275)
139 PRK13642 cbiO cobalt transport 99.9 1.5E-25 3.2E-30 148.7 8.2 84 1-84 142-227 (277)
140 COG4172 ABC-type uncharacteriz 99.9 9.9E-26 2.1E-30 155.6 7.4 85 1-85 428-515 (534)
141 PRK13648 cbiO cobalt transport 99.9 1.9E-25 4.1E-30 147.6 8.5 84 1-84 144-229 (269)
142 TIGR01192 chvA glucan exporter 99.9 1.3E-25 2.7E-30 161.2 8.2 83 1-84 473-556 (585)
143 cd03292 ABC_FtsE_transporter F 99.9 2.1E-25 4.5E-30 142.6 8.4 76 1-76 138-214 (214)
144 PRK10771 thiQ thiamine transpo 99.9 1.8E-25 3.9E-30 144.8 8.1 83 1-83 131-216 (232)
145 cd03266 ABC_NatA_sodium_export 99.9 2.6E-25 5.7E-30 142.6 8.8 78 1-78 138-216 (218)
146 TIGR02323 CP_lyasePhnK phospho 99.9 1.6E-25 3.5E-30 146.5 7.9 83 1-83 150-235 (253)
147 cd03297 ABC_ModC_molybdenum_tr 99.9 2.1E-25 4.5E-30 142.9 8.3 78 1-78 133-212 (214)
148 PRK14247 phosphate ABC transpo 99.9 1.7E-25 3.7E-30 146.1 8.0 83 1-84 148-232 (250)
149 cd03251 ABCC_MsbA MsbA is an e 99.9 2.2E-25 4.8E-30 144.2 8.4 82 1-83 140-222 (234)
150 TIGR03411 urea_trans_UrtD urea 99.9 2.2E-25 4.7E-30 145.0 8.4 83 1-84 145-229 (242)
151 PRK10575 iron-hydroxamate tran 99.9 1.9E-25 4.2E-30 147.3 8.3 83 1-83 149-234 (265)
152 KOG0057|consensus 99.9 1.8E-25 3.9E-30 157.8 8.5 84 1-85 489-573 (591)
153 PRK11124 artP arginine transpo 99.9 2.3E-25 5E-30 145.0 8.5 83 1-83 143-227 (242)
154 CHL00131 ycf16 sulfate ABC tra 99.9 2.9E-25 6.4E-30 145.1 9.0 82 1-82 153-237 (252)
155 cd03215 ABC_Carb_Monos_II This 99.9 2.4E-25 5.2E-30 139.9 8.2 76 1-76 106-182 (182)
156 TIGR01846 type_I_sec_HlyB type 99.9 1.4E-25 3E-30 163.3 8.2 83 1-84 595-678 (694)
157 PRK10908 cell division protein 99.9 3E-25 6.6E-30 142.8 8.9 78 1-78 139-217 (222)
158 PRK13549 xylose transporter AT 99.9 2.3E-25 4.9E-30 157.6 9.0 84 1-84 407-492 (506)
159 PRK10261 glutathione transport 99.9 1.5E-25 3.2E-30 161.9 8.1 84 1-84 465-551 (623)
160 PRK15112 antimicrobial peptide 99.9 1.8E-25 3.9E-30 147.6 7.8 83 1-83 151-236 (267)
161 PRK09700 D-allose transporter 99.9 2.8E-25 6E-30 157.2 9.2 84 1-84 147-232 (510)
162 TIGR03873 F420-0_ABC_ATP propo 99.9 2.6E-25 5.6E-30 145.9 8.4 84 1-84 139-224 (256)
163 cd03253 ABCC_ATM1_transporter 99.9 2.6E-25 5.6E-30 144.1 8.3 82 1-83 139-221 (236)
164 PRK15134 microcin C ABC transp 99.9 1.7E-25 3.6E-30 159.0 7.9 84 1-84 158-244 (529)
165 PRK10584 putative ABC transpor 99.9 3.3E-25 7.2E-30 143.0 8.7 77 1-77 148-225 (228)
166 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.2E-25 7E-30 141.2 8.4 79 1-79 106-187 (200)
167 cd03254 ABCC_Glucan_exporter_l 99.9 2.6E-25 5.6E-30 143.5 8.1 82 1-83 141-223 (229)
168 TIGR03771 anch_rpt_ABC anchore 99.9 3.4E-25 7.3E-30 143.1 8.6 83 1-84 115-199 (223)
169 PRK10418 nikD nickel transport 99.9 2.5E-25 5.4E-30 145.9 8.1 83 1-83 142-227 (254)
170 PRK10789 putative multidrug tr 99.9 1.8E-25 3.9E-30 159.9 8.0 83 1-84 453-536 (569)
171 PLN03232 ABC transporter C fam 99.9 1.3E-25 2.9E-30 173.3 7.8 84 1-84 742-826 (1495)
172 PRK10253 iron-enterobactin tra 99.9 3.1E-25 6.8E-30 146.3 8.5 84 1-84 145-231 (265)
173 PRK14239 phosphate transporter 99.9 2.7E-25 5.7E-30 145.3 8.1 83 1-84 150-234 (252)
174 PRK13640 cbiO cobalt transport 99.9 2.6E-25 5.6E-30 148.0 8.1 84 1-84 145-230 (282)
175 PRK14274 phosphate ABC transpo 99.9 2.6E-25 5.6E-30 146.1 8.0 83 1-84 157-241 (259)
176 PRK11629 lolD lipoprotein tran 99.9 3.7E-25 8E-30 143.4 8.7 78 1-78 147-225 (233)
177 PRK10744 pstB phosphate transp 99.9 2.5E-25 5.4E-30 146.3 8.0 82 1-83 158-241 (260)
178 TIGR03522 GldA_ABC_ATP gliding 99.9 2.8E-25 6.1E-30 149.0 8.3 83 1-84 135-219 (301)
179 PRK14244 phosphate ABC transpo 99.9 3E-25 6.6E-30 145.1 8.3 82 1-83 151-234 (251)
180 PRK14267 phosphate ABC transpo 99.9 2.5E-25 5.5E-30 145.5 7.9 82 1-83 151-234 (253)
181 TIGR03005 ectoine_ehuA ectoine 99.9 2.8E-25 6.1E-30 145.4 8.0 83 1-83 148-233 (252)
182 PRK09984 phosphonate/organopho 99.9 3.1E-25 6.8E-30 145.9 8.3 83 1-83 154-239 (262)
183 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.7E-25 8E-30 141.4 8.4 78 1-78 130-209 (211)
184 TIGR03740 galliderm_ABC gallid 99.9 4.6E-25 9.9E-30 142.1 8.8 82 1-82 126-209 (223)
185 COG4987 CydC ABC-type transpor 99.9 3.5E-25 7.6E-30 156.1 8.9 84 1-85 476-560 (573)
186 cd03230 ABC_DR_subfamily_A Thi 99.9 4.2E-25 9.1E-30 137.9 8.3 76 1-76 97-173 (173)
187 cd03264 ABC_drug_resistance_li 99.9 5.2E-25 1.1E-29 140.8 8.9 77 1-78 132-209 (211)
188 PRK14269 phosphate ABC transpo 99.9 3.2E-25 6.9E-30 144.8 8.0 82 1-83 144-227 (246)
189 PRK10938 putative molybdenum t 99.9 3E-25 6.5E-30 156.3 8.5 83 1-83 137-221 (490)
190 PRK13549 xylose transporter AT 99.9 4.4E-25 9.6E-30 156.1 9.3 84 1-84 145-230 (506)
191 PRK13632 cbiO cobalt transport 99.9 3.4E-25 7.4E-30 146.6 8.3 83 1-83 144-228 (271)
192 PRK14248 phosphate ABC transpo 99.9 3E-25 6.4E-30 146.5 7.9 82 1-83 166-249 (268)
193 PTZ00265 multidrug resistance 99.9 1.7E-25 3.7E-30 172.4 7.7 85 1-85 1360-1451(1466)
194 cd03247 ABCC_cytochrome_bd The 99.9 8.1E-25 1.8E-29 137.1 9.4 77 1-78 100-176 (178)
195 cd03269 ABC_putative_ATPase Th 99.9 4.6E-25 1E-29 140.9 8.5 78 1-78 130-208 (210)
196 PRK10261 glutathione transport 99.9 2.5E-25 5.4E-30 160.8 8.0 84 1-84 170-256 (623)
197 cd03214 ABC_Iron-Siderophores_ 99.9 6.9E-25 1.5E-29 137.7 8.9 78 1-78 99-178 (180)
198 PRK15439 autoinducer 2 ABC tra 99.9 4.6E-25 1E-29 156.3 9.1 84 1-84 142-227 (510)
199 PRK15439 autoinducer 2 ABC tra 99.9 5.2E-25 1.1E-29 156.0 9.2 84 1-84 405-490 (510)
200 PRK15134 microcin C ABC transp 99.9 3E-25 6.5E-30 157.6 8.0 84 1-84 427-513 (529)
201 cd03245 ABCC_bacteriocin_expor 99.9 6E-25 1.3E-29 141.1 8.7 77 1-78 142-218 (220)
202 PRK14240 phosphate transporter 99.9 4.6E-25 9.9E-30 144.1 8.1 82 1-83 148-231 (250)
203 PRK14251 phosphate ABC transpo 99.9 4E-25 8.6E-30 144.5 7.8 82 1-83 149-232 (251)
204 PRK13548 hmuV hemin importer A 99.9 5.2E-25 1.1E-29 144.8 8.4 83 1-83 136-227 (258)
205 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 7.7E-25 1.7E-29 141.6 9.0 78 1-78 144-222 (224)
206 PLN03232 ABC transporter C fam 99.9 3E-25 6.5E-30 171.3 8.3 84 1-85 1373-1457(1495)
207 PRK14249 phosphate ABC transpo 99.9 5.3E-25 1.1E-29 144.0 8.3 82 1-83 149-232 (251)
208 PRK10762 D-ribose transporter 99.9 6.3E-25 1.4E-29 155.2 9.2 84 1-84 143-228 (501)
209 PRK14270 phosphate ABC transpo 99.9 4.9E-25 1.1E-29 144.2 8.1 83 1-84 149-233 (251)
210 PRK14235 phosphate transporter 99.9 5.1E-25 1.1E-29 145.5 8.2 82 1-83 165-248 (267)
211 PRK14272 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 143.8 8.2 82 1-83 150-233 (252)
212 cd03262 ABC_HisP_GlnQ_permease 99.9 6.3E-25 1.4E-29 140.3 8.3 76 1-76 137-213 (213)
213 PRK14258 phosphate ABC transpo 99.9 4.9E-25 1.1E-29 145.1 8.0 84 1-84 152-243 (261)
214 PRK10419 nikE nickel transport 99.9 8.2E-25 1.8E-29 144.6 9.1 84 1-84 153-239 (268)
215 PRK11247 ssuB aliphatic sulfon 99.9 7.8E-25 1.7E-29 144.3 8.9 80 1-80 135-217 (257)
216 PLN03130 ABC transporter C fam 99.9 3.1E-25 6.8E-30 172.0 8.1 84 1-84 742-826 (1622)
217 PLN03130 ABC transporter C fam 99.9 3.7E-25 8.1E-30 171.6 8.5 84 1-85 1376-1460(1622)
218 TIGR02204 MsbA_rel ABC transpo 99.9 3.3E-25 7.1E-30 158.2 7.6 83 1-84 478-561 (576)
219 PRK14256 phosphate ABC transpo 99.9 4.3E-25 9.3E-30 144.5 7.5 83 1-84 150-234 (252)
220 PRK11288 araG L-arabinose tran 99.9 7E-25 1.5E-29 154.9 9.1 84 1-84 398-483 (501)
221 cd03229 ABC_Class3 This class 99.9 7.2E-25 1.6E-29 137.4 8.1 75 1-75 102-178 (178)
222 TIGR03269 met_CoM_red_A2 methy 99.9 5.1E-25 1.1E-29 156.1 8.2 83 1-83 170-255 (520)
223 cd03232 ABC_PDR_domain2 The pl 99.9 1.4E-24 3E-29 137.6 9.3 78 1-78 110-190 (192)
224 TIGR02633 xylG D-xylose ABC tr 99.9 8.6E-25 1.9E-29 154.3 9.3 83 1-83 143-227 (500)
225 PRK10982 galactose/methyl gala 99.9 8.8E-25 1.9E-29 154.1 9.1 83 1-83 136-220 (491)
226 PRK14262 phosphate ABC transpo 99.9 8.2E-25 1.8E-29 142.9 8.3 82 1-83 148-231 (250)
227 PRK14253 phosphate ABC transpo 99.9 8.9E-25 1.9E-29 142.7 8.4 82 1-83 147-230 (249)
228 TIGR01277 thiQ thiamine ABC tr 99.9 1.2E-24 2.5E-29 139.5 8.8 78 1-78 130-209 (213)
229 PRK14236 phosphate transporter 99.9 7.9E-25 1.7E-29 144.9 8.3 82 1-83 170-253 (272)
230 PRK14275 phosphate ABC transpo 99.9 7.5E-25 1.6E-29 146.1 8.2 82 1-83 184-267 (286)
231 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.5E-24 3.2E-29 138.4 9.3 79 1-80 127-206 (207)
232 PRK14255 phosphate ABC transpo 99.9 7.7E-25 1.7E-29 143.2 8.0 82 1-83 150-233 (252)
233 PRK14238 phosphate transporter 99.9 8E-25 1.7E-29 144.9 8.2 83 1-84 169-253 (271)
234 COG4608 AppF ABC-type oligopep 99.9 5.1E-25 1.1E-29 145.2 7.1 84 1-84 111-197 (268)
235 PRK13546 teichoic acids export 99.9 9.3E-25 2E-29 144.5 8.3 83 1-83 145-229 (264)
236 TIGR03269 met_CoM_red_A2 methy 99.9 5.8E-25 1.2E-29 155.9 7.8 84 1-84 429-515 (520)
237 TIGR01194 cyc_pep_trnsptr cycl 99.9 9.9E-25 2.1E-29 155.8 9.1 78 1-78 472-550 (555)
238 PRK14265 phosphate ABC transpo 99.9 9E-25 1.9E-29 144.9 8.2 83 1-84 163-256 (274)
239 PRK15056 manganese/iron transp 99.9 1.2E-24 2.6E-29 144.0 8.9 83 1-84 144-228 (272)
240 cd03213 ABCG_EPDR ABCG transpo 99.9 1.7E-24 3.8E-29 137.4 9.2 78 1-78 113-192 (194)
241 PRK10762 D-ribose transporter 99.9 1E-24 2.2E-29 154.1 8.9 84 1-84 397-482 (501)
242 PRK03695 vitamin B12-transport 99.9 1.1E-24 2.3E-29 142.7 8.3 83 1-83 128-219 (248)
243 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.2E-24 2.6E-29 145.2 8.6 84 1-84 161-245 (282)
244 TIGR00957 MRP_assoc_pro multi 99.9 6.4E-25 1.4E-29 169.7 8.2 84 1-85 1423-1507(1522)
245 PRK14243 phosphate transporter 99.9 1.2E-24 2.5E-29 143.6 8.1 83 1-84 153-246 (264)
246 PRK09700 D-allose transporter 99.9 1.6E-24 3.4E-29 153.4 9.2 78 1-78 411-489 (510)
247 PRK14259 phosphate ABC transpo 99.9 1.1E-24 2.5E-29 144.0 8.0 72 1-73 156-228 (269)
248 cd03300 ABC_PotA_N PotA is an 99.9 1.2E-24 2.7E-29 141.0 7.7 82 1-82 132-216 (232)
249 PRK14241 phosphate transporter 99.9 1.3E-24 2.7E-29 142.8 7.8 82 1-83 150-239 (258)
250 cd03270 ABC_UvrA_I The excisio 99.9 2.4E-24 5.2E-29 139.6 9.1 78 1-78 139-224 (226)
251 cd03267 ABC_NatA_like Similar 99.9 2.4E-24 5.2E-29 140.1 9.0 78 1-78 155-234 (236)
252 cd03288 ABCC_SUR2 The SUR doma 99.9 1.7E-24 3.6E-29 142.3 8.3 82 1-83 158-240 (257)
253 cd03228 ABCC_MRP_Like The MRP 99.9 2.4E-24 5.3E-29 134.3 8.6 74 1-75 98-171 (171)
254 PRK14237 phosphate transporter 99.9 1.6E-24 3.6E-29 143.1 8.2 83 1-84 165-249 (267)
255 PRK10982 galactose/methyl gala 99.9 2E-24 4.3E-29 152.3 9.1 81 1-81 393-475 (491)
256 KOG0054|consensus 99.9 7.2E-25 1.6E-29 166.9 7.3 84 1-84 645-729 (1381)
257 PRK10522 multidrug transporter 99.9 2E-24 4.4E-29 153.9 9.2 78 1-78 451-529 (547)
258 PRK14261 phosphate ABC transpo 99.9 1.8E-24 3.9E-29 141.6 8.2 82 1-83 151-234 (253)
259 PRK14271 phosphate ABC transpo 99.9 1.8E-24 4E-29 143.6 8.1 83 1-84 165-249 (276)
260 TIGR00968 3a0106s01 sulfate AB 99.9 1.8E-24 3.9E-29 140.7 7.8 83 1-83 132-217 (237)
261 cd03234 ABCG_White The White s 99.9 3.5E-24 7.5E-29 138.3 9.1 78 1-78 145-224 (226)
262 TIGR02633 xylG D-xylose ABC tr 99.9 2.2E-24 4.7E-29 152.3 8.8 78 1-78 405-483 (500)
263 PRK09544 znuC high-affinity zi 99.9 2.1E-24 4.5E-29 141.8 8.1 83 1-84 122-207 (251)
264 PRK14263 phosphate ABC transpo 99.9 2.4E-24 5.2E-29 142.0 8.4 83 1-84 151-243 (261)
265 cd03244 ABCC_MRP_domain2 Domai 99.9 3.7E-24 8.1E-29 137.5 9.0 77 1-78 141-217 (221)
266 PRK11248 tauB taurine transpor 99.9 3.1E-24 6.8E-29 141.1 8.8 78 1-78 130-211 (255)
267 cd03299 ABC_ModC_like Archeal 99.9 2.3E-24 5.1E-29 140.0 8.1 82 1-82 131-215 (235)
268 COG4161 ArtP ABC-type arginine 99.9 3.2E-24 7E-29 134.1 8.3 82 1-82 143-226 (242)
269 PRK13547 hmuV hemin importer A 99.9 2.2E-24 4.7E-29 143.2 8.0 84 1-84 147-242 (272)
270 COG4618 ArpD ABC-type protease 99.9 1.2E-24 2.6E-29 152.9 7.0 85 1-85 474-559 (580)
271 PRK14266 phosphate ABC transpo 99.9 3.1E-24 6.6E-29 140.2 8.2 82 1-83 148-231 (250)
272 PRK10247 putative ABC transpor 99.9 2.5E-24 5.5E-29 139.1 7.7 82 1-82 139-223 (225)
273 PRK14260 phosphate ABC transpo 99.9 2.8E-24 6.1E-29 141.3 7.9 83 1-84 152-241 (259)
274 cd03238 ABC_UvrA The excision 99.9 5E-24 1.1E-28 134.1 8.4 76 1-76 89-166 (176)
275 cd03248 ABCC_TAP TAP, the Tran 99.9 4.9E-24 1.1E-28 137.5 8.5 75 1-76 152-226 (226)
276 PRK13545 tagH teichoic acids e 99.9 3.4E-24 7.3E-29 152.3 8.4 84 1-84 145-230 (549)
277 PTZ00243 ABC transporter; Prov 99.9 2.6E-24 5.6E-29 166.6 8.2 83 1-84 1447-1531(1560)
278 PRK11288 araG L-arabinose tran 99.9 4.8E-24 1E-28 150.7 8.8 78 1-78 142-220 (501)
279 PRK14246 phosphate ABC transpo 99.9 5.1E-24 1.1E-28 140.2 8.1 83 1-84 155-239 (257)
280 PRK14254 phosphate ABC transpo 99.9 5.4E-24 1.2E-28 141.9 8.3 82 1-83 182-266 (285)
281 TIGR01271 CFTR_protein cystic 99.9 3.5E-24 7.7E-29 165.4 8.2 84 1-85 1355-1439(1490)
282 cd03223 ABCD_peroxisomal_ALDP 99.9 1E-23 2.3E-28 131.1 8.7 71 1-74 93-163 (166)
283 PRK14252 phosphate ABC transpo 99.9 6.9E-24 1.5E-28 139.8 8.3 82 1-83 163-246 (265)
284 TIGR02982 heterocyst_DevA ABC 99.9 9.6E-24 2.1E-28 135.8 8.6 76 1-76 143-219 (220)
285 cd03237 ABC_RNaseL_inhibitor_d 99.9 8.9E-24 1.9E-28 138.6 8.4 75 1-75 117-193 (246)
286 COG2884 FtsE Predicted ATPase 99.9 1.2E-23 2.7E-28 133.4 8.6 78 1-78 139-217 (223)
287 PLN03211 ABC transporter G-25; 99.9 9.3E-24 2E-28 153.5 9.0 84 1-84 208-294 (659)
288 cd03250 ABCC_MRP_domain1 Domai 99.9 1.3E-23 2.9E-28 133.8 8.5 75 1-75 129-204 (204)
289 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-23 3.1E-28 134.8 8.3 75 1-75 142-218 (218)
290 cd03222 ABC_RNaseL_inhibitor T 99.9 1.9E-23 4.2E-28 131.5 8.5 76 1-76 73-150 (177)
291 COG4172 ABC-type uncharacteriz 99.9 7.8E-24 1.7E-28 146.3 7.2 84 1-84 159-245 (534)
292 PRK14264 phosphate ABC transpo 99.9 1.3E-23 2.9E-28 141.1 8.1 82 1-83 202-286 (305)
293 TIGR03608 L_ocin_972_ABC putat 99.9 1.5E-23 3.2E-28 133.4 7.8 71 1-71 136-206 (206)
294 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.4E-23 5.2E-28 127.0 8.4 72 1-75 72-144 (144)
295 TIGR01271 CFTR_protein cystic 99.9 1.3E-23 2.8E-28 162.3 8.4 84 1-84 550-634 (1490)
296 PTZ00265 multidrug resistance 99.9 1.2E-23 2.6E-28 162.3 8.1 74 1-74 581-655 (1466)
297 TIGR00957 MRP_assoc_pro multi 99.9 1.2E-23 2.5E-28 162.8 8.0 84 1-84 762-848 (1522)
298 TIGR00955 3a01204 The Eye Pigm 99.9 3.1E-23 6.7E-28 149.8 8.9 84 1-84 168-254 (617)
299 cd03271 ABC_UvrA_II The excisi 99.9 5.6E-23 1.2E-27 136.0 9.4 81 1-81 171-261 (261)
300 PRK15064 ABC transporter ATP-b 99.9 2.8E-23 6.1E-28 147.6 8.0 80 1-83 157-239 (530)
301 cd03233 ABC_PDR_domain1 The pl 99.9 7.8E-23 1.7E-27 130.5 9.1 78 1-78 120-200 (202)
302 PRK15177 Vi polysaccharide exp 99.9 3.8E-23 8.3E-28 132.9 7.7 81 1-82 106-188 (213)
303 PTZ00243 ABC transporter; Prov 99.9 2.7E-23 5.8E-28 161.0 8.1 84 1-84 784-868 (1560)
304 TIGR02857 CydD thiol reductant 99.9 3.5E-23 7.6E-28 146.8 7.6 70 1-71 460-529 (529)
305 TIGR01257 rim_protein retinal- 99.9 4.5E-23 9.8E-28 162.0 8.6 84 1-84 2072-2157(2272)
306 PRK10938 putative molybdenum t 99.9 4.6E-23 1E-27 145.3 7.8 78 1-78 403-483 (490)
307 PRK15064 ABC transporter ATP-b 99.9 5.4E-23 1.2E-27 146.2 7.8 81 1-84 440-523 (530)
308 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.4E-22 3.1E-27 124.5 8.6 75 1-75 82-157 (157)
309 PRK13543 cytochrome c biogenes 99.9 1.4E-22 3E-27 130.1 8.3 73 1-73 139-212 (214)
310 COG1137 YhbG ABC-type (unclass 99.9 1.2E-22 2.5E-27 129.9 7.7 85 1-85 141-227 (243)
311 COG0411 LivG ABC-type branched 99.9 1.3E-22 2.9E-27 132.1 8.0 84 1-84 151-237 (250)
312 PRK10535 macrolide transporter 99.9 1.8E-22 3.8E-27 146.6 9.4 84 1-84 146-230 (648)
313 PRK13538 cytochrome c biogenes 99.9 1.7E-22 3.7E-27 128.9 8.0 71 1-71 131-202 (204)
314 TIGR02324 CP_lyasePhnL phospho 99.9 1.3E-22 2.9E-27 130.6 7.5 71 1-71 151-222 (224)
315 COG5265 ATM1 ABC-type transpor 99.9 9.6E-23 2.1E-27 141.1 6.8 84 1-85 401-485 (497)
316 TIGR01257 rim_protein retinal- 99.9 1.5E-22 3.3E-27 159.1 8.6 82 1-83 1063-1146(2272)
317 PRK13409 putative ATPase RIL; 99.9 2.2E-22 4.7E-27 145.0 8.8 73 1-73 455-529 (590)
318 PRK11819 putative ABC transpor 99.9 1.9E-22 4.1E-27 144.2 8.2 80 1-83 165-247 (556)
319 PRK10636 putative ABC transpor 99.9 1.8E-22 3.9E-27 146.3 8.1 80 1-83 432-514 (638)
320 PRK13539 cytochrome c biogenes 99.9 3E-22 6.5E-27 128.0 7.9 72 1-73 129-200 (207)
321 PRK11147 ABC transporter ATPas 99.9 2.2E-22 4.7E-27 145.8 7.7 80 1-83 158-240 (635)
322 COG4181 Predicted ABC-type tra 99.9 3.2E-22 7E-27 125.7 7.4 77 1-77 148-225 (228)
323 cd03231 ABC_CcmA_heme_exporter 99.9 4E-22 8.6E-27 127.0 7.9 71 1-71 127-198 (201)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3E-22 6.5E-27 143.1 8.2 80 1-83 163-245 (552)
325 COG4148 ModC ABC-type molybdat 99.9 1.6E-22 3.6E-27 134.5 6.2 84 1-84 130-216 (352)
326 cd03236 ABC_RNaseL_inhibitor_d 99.9 5.2E-22 1.1E-26 130.9 8.6 73 1-73 141-214 (255)
327 PRK10636 putative ABC transpor 99.9 2.8E-22 6E-27 145.4 7.6 79 1-82 151-232 (638)
328 COG4152 ABC-type uncharacteriz 99.9 2.2E-22 4.7E-27 131.8 6.1 84 1-84 132-217 (300)
329 COG4604 CeuD ABC-type enteroch 99.9 2.3E-22 5E-27 128.5 6.0 85 1-85 137-224 (252)
330 TIGR01166 cbiO cobalt transpor 99.9 3.1E-22 6.7E-27 126.3 6.6 61 1-61 129-189 (190)
331 COG0410 LivF ABC-type branched 99.9 1E-21 2.2E-26 127.2 8.3 84 1-84 138-224 (237)
332 PLN03073 ABC transporter F fam 99.9 7E-22 1.5E-26 144.8 8.2 80 1-83 629-711 (718)
333 TIGR00956 3a01205 Pleiotropic 99.9 1.5E-21 3.3E-26 150.3 9.6 82 1-82 903-989 (1394)
334 PLN03140 ABC transporter G fam 99.9 1.6E-21 3.4E-26 150.7 9.6 81 1-81 1021-1105(1470)
335 TIGR00954 3a01203 Peroxysomal 99.9 1.4E-21 3E-26 142.2 8.6 70 1-73 584-653 (659)
336 PRK13540 cytochrome c biogenes 99.9 1.1E-21 2.3E-26 124.8 6.7 68 1-68 129-196 (200)
337 PRK13541 cytochrome c biogenes 99.9 1.5E-21 3.2E-26 123.8 7.2 68 1-68 125-192 (195)
338 PRK00349 uvrA excinuclease ABC 99.9 1.3E-21 2.9E-26 146.2 8.1 84 1-84 491-583 (943)
339 TIGR00630 uvra excinuclease AB 99.9 1.5E-21 3.2E-26 145.8 8.1 84 1-84 489-581 (924)
340 COG1119 ModF ABC-type molybden 99.9 3.2E-21 6.9E-26 125.9 8.5 78 1-78 173-253 (257)
341 TIGR02868 CydC thiol reductant 99.9 1.1E-21 2.4E-26 139.2 6.8 58 1-59 472-529 (529)
342 COG1129 MglA ABC-type sugar tr 99.9 2.9E-21 6.4E-26 136.3 8.8 78 1-78 147-225 (500)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.1E-21 4.5E-26 138.8 8.2 79 1-82 445-527 (552)
344 PRK11819 putative ABC transpor 99.9 1.8E-21 3.9E-26 139.2 7.7 80 1-83 447-530 (556)
345 PRK13409 putative ATPase RIL; 99.9 2.7E-21 5.8E-26 139.4 8.6 73 1-74 214-287 (590)
346 PLN03073 ABC transporter F fam 99.9 2.4E-21 5.2E-26 142.0 8.5 79 1-82 346-427 (718)
347 TIGR00956 3a01205 Pleiotropic 99.9 2.5E-21 5.3E-26 149.2 8.8 84 1-84 211-298 (1394)
348 PRK11147 ABC transporter ATPas 99.9 2.3E-21 5.1E-26 140.4 8.0 80 1-83 442-525 (635)
349 COG4559 ABC-type hemin transpo 99.8 4.7E-21 1E-25 123.5 8.1 85 1-85 137-229 (259)
350 TIGR01189 ccmA heme ABC export 99.8 3.6E-21 7.7E-26 122.2 7.4 68 1-69 129-196 (198)
351 KOG0056|consensus 99.8 1.9E-21 4.1E-26 137.4 6.4 84 1-85 676-760 (790)
352 COG4525 TauB ABC-type taurine 99.8 3.2E-21 6.8E-26 123.4 6.6 77 1-77 134-214 (259)
353 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.3E-20 2.8E-25 121.1 8.7 75 1-75 125-210 (213)
354 PRK00349 uvrA excinuclease ABC 99.8 1.2E-20 2.5E-25 141.2 8.4 84 1-84 832-925 (943)
355 TIGR00630 uvra excinuclease AB 99.8 2.7E-20 5.8E-25 139.1 9.0 84 1-84 830-923 (924)
356 PLN03140 ABC transporter G fam 99.8 1.1E-20 2.4E-25 146.0 6.8 84 1-84 338-425 (1470)
357 COG4107 PhnK ABC-type phosphon 99.8 3.2E-20 7E-25 117.4 7.4 84 1-84 153-239 (258)
358 KOG0054|consensus 99.8 2.8E-20 6.1E-25 142.2 8.1 84 1-85 1277-1361(1381)
359 cd03278 ABC_SMC_barmotin Barmo 99.8 5.7E-20 1.2E-24 117.2 8.0 72 1-73 115-190 (197)
360 cd03275 ABC_SMC1_euk Eukaryoti 99.8 5.6E-20 1.2E-24 120.4 8.0 73 1-73 157-233 (247)
361 COG1101 PhnK ABC-type uncharac 99.8 5.1E-20 1.1E-24 119.0 7.5 77 1-77 150-228 (263)
362 cd03240 ABC_Rad50 The catalyti 99.8 9.3E-20 2E-24 116.7 8.7 73 1-73 117-197 (204)
363 PRK00635 excinuclease ABC subu 99.8 4.4E-20 9.5E-25 143.7 8.3 84 1-84 478-570 (1809)
364 PRK00635 excinuclease ABC subu 99.8 5.1E-20 1.1E-24 143.3 8.4 84 1-84 811-904 (1809)
365 KOG0061|consensus 99.8 3.2E-20 7E-25 134.3 6.7 84 1-84 172-258 (613)
366 COG0488 Uup ATPase components 99.8 4E-20 8.6E-25 131.9 6.3 79 1-82 155-236 (530)
367 COG4167 SapF ABC-type antimicr 99.8 1E-19 2.2E-24 115.8 7.2 85 1-85 151-238 (267)
368 COG4674 Uncharacterized ABC-ty 99.8 6.3E-20 1.4E-24 117.3 6.2 83 1-84 149-233 (249)
369 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.8E-19 3.9E-24 117.2 8.3 71 1-72 160-234 (243)
370 COG4586 ABC-type uncharacteriz 99.8 1.6E-19 3.4E-24 119.9 7.3 82 1-83 158-243 (325)
371 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2E-19 4.4E-24 114.8 7.4 74 1-74 111-191 (198)
372 COG1129 MglA ABC-type sugar tr 99.8 2.6E-19 5.7E-24 126.5 8.6 77 1-77 403-480 (500)
373 COG3845 ABC-type uncharacteriz 99.8 3.4E-19 7.4E-24 125.0 8.9 77 1-77 142-219 (501)
374 cd03239 ABC_SMC_head The struc 99.8 5.1E-19 1.1E-23 111.4 8.2 73 1-73 96-172 (178)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.8 6.5E-19 1.4E-23 115.5 8.5 71 1-72 168-242 (251)
376 KOG0059|consensus 99.8 3.2E-19 6.9E-24 133.2 7.3 84 1-84 700-785 (885)
377 COG4619 ABC-type uncharacteriz 99.8 6.7E-19 1.5E-23 110.5 7.3 76 1-76 135-212 (223)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1E-18 2.2E-23 112.6 8.2 72 1-73 129-204 (212)
379 COG1134 TagH ABC-type polysacc 99.8 1.2E-18 2.6E-23 113.8 7.4 84 1-84 149-234 (249)
380 cd03227 ABC_Class2 ABC-type Cl 99.7 9E-18 2E-22 104.0 8.2 73 1-73 79-155 (162)
381 cd03241 ABC_RecN RecN ATPase i 99.7 1.4E-17 2.9E-22 110.8 8.2 73 1-74 172-248 (276)
382 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.7E-17 3.7E-22 107.0 8.2 75 1-75 128-211 (213)
383 COG0488 Uup ATPase components 99.7 1.3E-17 2.8E-22 119.1 7.8 79 1-83 441-522 (530)
384 KOG0062|consensus 99.7 2.1E-17 4.5E-22 116.7 8.3 74 1-77 484-558 (582)
385 TIGR00634 recN DNA repair prot 99.7 2.4E-17 5.2E-22 118.4 8.5 74 1-75 442-519 (563)
386 COG4136 ABC-type uncharacteriz 99.7 1.4E-17 3E-22 103.3 5.8 71 1-71 136-207 (213)
387 PHA02562 46 endonuclease subun 99.7 5E-17 1.1E-21 116.0 7.6 71 1-73 470-551 (562)
388 COG0396 sufC Cysteine desulfur 99.7 1.8E-16 3.8E-21 103.1 9.0 81 1-81 146-229 (251)
389 PRK10869 recombination and rep 99.7 9.2E-17 2E-21 115.4 8.5 73 1-74 432-508 (553)
390 KOG0927|consensus 99.7 4.3E-17 9.4E-22 115.7 6.6 81 1-83 223-306 (614)
391 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.6E-16 3.4E-21 101.3 4.6 77 1-78 93-170 (200)
392 PRK03918 chromosome segregatio 99.6 8.4E-16 1.8E-20 114.2 8.4 73 1-73 790-868 (880)
393 KOG0062|consensus 99.6 9.1E-17 2E-21 113.5 2.8 79 1-82 200-281 (582)
394 COG4778 PhnL ABC-type phosphon 99.6 5E-16 1.1E-20 98.0 5.1 73 1-73 154-227 (235)
395 TIGR00618 sbcc exonuclease Sbc 99.6 1.3E-15 2.8E-20 115.4 8.4 73 1-73 952-1035(1042)
396 COG3845 ABC-type uncharacteriz 99.6 2E-15 4.4E-20 106.1 7.6 82 1-82 405-488 (501)
397 COG4133 CcmA ABC-type transpor 99.6 2.7E-15 5.9E-20 95.2 6.5 62 1-62 132-193 (209)
398 KOG0065|consensus 99.6 1.3E-16 2.8E-21 121.4 0.5 82 1-82 931-1017(1391)
399 COG4615 PvdE ABC-type sideroph 99.6 1.1E-15 2.3E-20 106.2 4.5 81 1-81 450-531 (546)
400 COG4170 SapD ABC-type antimicr 99.6 1.8E-15 3.9E-20 98.4 4.0 83 2-84 161-246 (330)
401 PRK01156 chromosome segregatio 99.6 1.3E-14 2.7E-19 108.5 8.3 72 1-72 803-883 (895)
402 TIGR00606 rad50 rad50. This fa 99.6 1.3E-14 2.7E-19 112.1 8.3 72 1-72 1201-1289(1311)
403 KOG0927|consensus 99.6 3.8E-15 8.2E-20 106.0 4.9 74 1-77 511-585 (614)
404 TIGR02168 SMC_prok_B chromosom 99.6 9.9E-15 2.1E-19 109.9 7.2 71 1-72 1091-1165(1179)
405 COG1245 Predicted ATPase, RNas 99.5 2E-14 4.4E-19 101.1 7.6 72 1-73 457-531 (591)
406 COG1245 Predicted ATPase, RNas 99.5 2.9E-14 6.3E-19 100.3 7.9 72 1-73 215-288 (591)
407 COG4178 ABC-type uncharacteriz 99.5 2E-14 4.4E-19 103.7 6.9 71 1-72 517-587 (604)
408 cd03242 ABC_RecF RecF is a rec 99.5 3E-14 6.5E-19 94.5 7.1 72 1-76 185-269 (270)
409 COG0178 UvrA Excinuclease ATPa 99.5 5.7E-14 1.2E-18 103.6 7.7 84 1-84 824-917 (935)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.5 3.4E-14 7.4E-19 92.2 5.5 74 1-77 91-171 (222)
411 KOG0066|consensus 99.5 7.1E-14 1.5E-18 98.7 7.3 80 1-83 706-788 (807)
412 PRK10246 exonuclease subunit S 99.5 1.1E-13 2.3E-18 105.2 8.2 73 1-73 951-1032(1047)
413 TIGR02169 SMC_prok_A chromosom 99.5 2.2E-13 4.7E-18 103.0 8.0 71 1-72 1076-1150(1164)
414 cd03243 ABC_MutS_homologs The 99.4 2.2E-13 4.7E-18 86.9 6.0 74 4-77 95-169 (202)
415 COG4138 BtuD ABC-type cobalami 99.4 1.7E-14 3.8E-19 91.5 0.5 84 1-85 127-220 (248)
416 PRK02224 chromosome segregatio 99.4 5.5E-13 1.2E-17 99.5 8.3 73 1-74 783-869 (880)
417 PRK00064 recF recombination pr 99.4 5.8E-13 1.3E-17 91.6 7.6 73 1-76 275-359 (361)
418 COG0178 UvrA Excinuclease ATPa 99.3 4.2E-12 9.2E-17 93.9 7.6 85 1-85 483-576 (935)
419 KOG0066|consensus 99.3 2.6E-13 5.7E-18 95.9 1.2 74 1-77 414-488 (807)
420 TIGR00611 recf recF protein. A 99.3 5.7E-12 1.2E-16 87.0 6.3 59 1-62 277-344 (365)
421 PF02463 SMC_N: RecF/RecN/SMC 99.3 2.1E-11 4.6E-16 78.2 7.6 71 1-72 138-212 (220)
422 KOG0060|consensus 99.3 1.3E-11 2.9E-16 88.7 6.9 70 1-73 572-641 (659)
423 smart00534 MUTSac ATPase domai 99.3 1.2E-11 2.5E-16 78.1 5.9 58 9-66 68-129 (185)
424 KOG2355|consensus 99.2 2.7E-11 6E-16 78.7 6.7 78 1-78 149-228 (291)
425 KOG0065|consensus 99.2 2.1E-11 4.6E-16 93.6 3.5 84 1-84 262-349 (1391)
426 PRK14079 recF recombination pr 99.1 2.1E-10 4.5E-15 78.8 7.7 72 1-78 265-345 (349)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.1 2.5E-10 5.5E-15 73.7 6.4 60 4-63 95-158 (213)
428 cd03282 ABC_MSH4_euk MutS4 hom 99.1 1.9E-10 4.1E-15 73.9 5.0 62 2-64 94-156 (204)
429 COG2401 ABC-type ATPase fused 99.1 4E-10 8.7E-15 79.3 6.8 76 1-76 509-587 (593)
430 cd03283 ABC_MutS-like MutS-lik 99.1 5.2E-10 1.1E-14 71.6 6.9 58 6-63 92-152 (199)
431 cd03284 ABC_MutS1 MutS1 homolo 99.1 3.1E-10 6.6E-15 73.4 5.8 73 2-77 88-171 (216)
432 COG0419 SbcC ATPase involved i 99.1 7.9E-10 1.7E-14 83.4 8.4 73 1-73 817-897 (908)
433 TIGR02680 conserved hypothetic 99.0 5.3E-10 1.1E-14 87.2 6.4 57 1-60 1249-1317(1353)
434 PRK00409 recombination and DNA 99.0 3.9E-10 8.5E-15 84.1 4.6 63 1-64 392-455 (782)
435 PF13304 AAA_21: AAA domain; P 99.0 1.9E-09 4.2E-14 68.0 7.1 61 1-62 238-302 (303)
436 KOG0063|consensus 98.9 3.6E-09 7.8E-14 74.7 6.9 73 1-73 215-288 (592)
437 KOG0064|consensus 98.9 1.3E-09 2.9E-14 78.3 4.0 67 1-70 614-680 (728)
438 KOG0063|consensus 98.8 4.9E-09 1.1E-13 74.1 4.3 72 1-73 458-532 (592)
439 cd01124 KaiC KaiC is a circadi 98.8 2E-08 4.4E-13 62.6 6.5 71 2-72 74-163 (187)
440 TIGR01069 mutS2 MutS2 family p 98.8 9.9E-09 2.1E-13 76.6 5.2 60 1-61 387-447 (771)
441 TIGR02858 spore_III_AA stage I 98.8 3.9E-08 8.5E-13 65.7 7.3 65 12-84 189-267 (270)
442 PTZ00132 GTP-binding nuclear p 98.7 2.9E-08 6.3E-13 63.5 4.5 41 4-44 157-202 (215)
443 PRK13695 putative NTPase; Prov 98.6 5.1E-08 1.1E-12 60.8 4.3 72 3-78 82-155 (174)
444 PRK13830 conjugal transfer pro 98.6 1.6E-07 3.4E-12 70.7 7.1 65 13-77 648-723 (818)
445 cd01128 rho_factor Transcripti 98.6 3.7E-08 8E-13 65.2 3.1 72 1-77 131-212 (249)
446 cd03286 ABC_MSH6_euk MutS6 hom 98.6 2E-07 4.3E-12 60.6 6.1 58 6-63 98-157 (218)
447 COG3910 Predicted ATPase [Gene 98.6 6.6E-07 1.4E-11 57.6 8.0 76 1-77 131-207 (233)
448 PF13558 SbcCD_C: Putative exo 98.4 6.2E-07 1.3E-11 50.8 4.6 26 17-42 63-88 (90)
449 cd03287 ABC_MSH3_euk MutS3 hom 98.4 1.2E-06 2.6E-11 57.1 6.4 57 6-62 99-157 (222)
450 COG1196 Smc Chromosome segrega 98.4 9.2E-07 2E-11 68.6 5.8 67 1-68 1068-1138(1163)
451 PRK13891 conjugal transfer pro 98.3 2.7E-06 5.9E-11 64.4 6.6 53 10-62 680-733 (852)
452 COG0497 RecN ATPase involved i 98.3 5.8E-06 1.3E-10 60.0 7.7 72 1-73 433-508 (557)
453 KOG0964|consensus 98.2 8.6E-07 1.9E-11 67.2 2.7 70 1-71 1099-1172(1200)
454 PRK06067 flagellar accessory p 98.1 2E-05 4.3E-10 51.2 7.7 70 3-72 104-186 (234)
455 PF13175 AAA_15: AAA ATPase do 98.1 2.3E-05 5.1E-10 53.8 7.4 61 1-61 343-414 (415)
456 KOG0933|consensus 98.1 4.9E-06 1.1E-10 63.4 3.9 67 1-68 1084-1154(1174)
457 TIGR03185 DNA_S_dndD DNA sulfu 98.0 1.7E-05 3.7E-10 58.5 6.0 57 1-60 553-615 (650)
458 KOG0962|consensus 98.0 1.3E-05 2.8E-10 62.5 5.1 66 7-72 1197-1273(1294)
459 PF13166 AAA_13: AAA domain 97.8 6.5E-05 1.4E-09 55.5 6.7 62 1-62 502-574 (712)
460 COG4637 Predicted ATPase [Gene 97.8 0.00015 3.2E-09 50.0 7.8 71 1-72 272-346 (373)
461 PRK08533 flagellar accessory p 97.8 0.0001 2.2E-09 48.2 6.3 56 16-72 116-184 (230)
462 PRK13873 conjugal transfer ATP 97.7 6.9E-05 1.5E-09 56.6 5.6 49 13-61 631-680 (811)
463 cd01125 repA Hexameric Replica 97.7 3.6E-05 7.7E-10 50.2 3.6 45 14-59 108-159 (239)
464 cd01120 RecA-like_NTPases RecA 97.7 0.00018 4E-09 43.0 5.8 55 6-61 74-139 (165)
465 COG1195 RecF Recombinational D 97.6 0.00034 7.4E-09 48.7 6.5 73 1-77 277-362 (363)
466 PRK13898 type IV secretion sys 97.5 0.00027 5.8E-09 53.4 6.1 49 13-61 638-687 (800)
467 cd01131 PilT Pilus retraction 97.5 0.00024 5.2E-09 45.3 4.3 56 9-71 66-121 (198)
468 TIGR00152 dephospho-CoA kinase 97.3 0.00029 6.4E-09 44.3 3.1 71 2-74 60-133 (188)
469 TIGR02788 VirB11 P-type DNA tr 97.2 0.00025 5.4E-09 48.1 2.4 69 7-83 208-278 (308)
470 PRK05399 DNA mismatch repair p 97.1 0.0013 2.8E-08 50.3 5.8 56 6-64 673-735 (854)
471 PF09818 ABC_ATPase: Predicted 97.0 0.0059 1.3E-07 43.7 7.9 74 1-74 324-414 (448)
472 PRK08699 DNA polymerase III su 97.0 0.0016 3.4E-08 44.8 4.8 41 21-62 116-156 (325)
473 PRK07721 fliI flagellum-specif 96.9 0.0049 1.1E-07 44.0 6.8 54 25-80 273-337 (438)
474 PF00488 MutS_V: MutS domain V 96.9 0.0073 1.6E-07 39.7 7.0 48 15-62 120-169 (235)
475 TIGR02655 circ_KaiC circadian 96.7 0.00089 1.9E-08 48.1 1.8 38 34-72 142-190 (484)
476 PF13514 AAA_27: AAA domain 96.3 0.019 4.1E-07 45.1 7.0 56 7-63 1039-1096(1111)
477 smart00382 AAA ATPases associa 96.3 0.035 7.6E-07 31.6 6.7 55 4-58 65-125 (148)
478 TIGR01420 pilT_fam pilus retra 96.3 0.0086 1.9E-07 41.3 4.5 54 8-68 186-239 (343)
479 PRK06793 fliI flagellum-specif 96.0 0.0093 2E-07 42.6 3.7 71 1-77 223-301 (432)
480 COG3044 Predicted ATPase of th 95.9 0.048 1.1E-06 39.3 6.6 74 1-75 322-410 (554)
481 TIGR01070 mutS1 DNA mismatch r 95.8 0.03 6.5E-07 43.0 5.8 47 15-61 669-717 (840)
482 KOG0996|consensus 95.8 0.012 2.6E-07 46.3 3.6 71 1-72 1197-1271(1293)
483 COG4694 Uncharacterized protei 95.7 0.071 1.5E-06 39.6 6.9 44 19-62 557-600 (758)
484 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.076 1.6E-06 33.1 6.1 64 9-73 85-154 (159)
485 PRK14088 dnaA chromosomal repl 95.6 0.05 1.1E-06 38.8 5.8 48 16-63 193-242 (440)
486 PRK07414 cob(I)yrinic acid a,c 95.2 0.094 2E-06 33.4 5.6 65 9-74 105-175 (178)
487 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.093 2E-06 33.7 5.5 55 16-72 106-177 (224)
488 COG3593 Predicted ATP-dependen 95.0 0.084 1.8E-06 39.1 5.7 55 17-72 301-357 (581)
489 KOG0018|consensus 94.8 0.073 1.6E-06 41.8 5.1 69 1-72 1053-1125(1141)
490 PRK06893 DNA replication initi 94.2 0.13 2.9E-06 33.4 4.7 44 15-59 89-134 (229)
491 PRK05986 cob(I)alamin adenolsy 94.0 0.18 4E-06 32.4 5.0 65 8-73 104-174 (191)
492 cd00009 AAA The AAA+ (ATPases 94.0 0.33 7.1E-06 27.8 5.7 53 7-60 74-131 (151)
493 TIGR00708 cobA cob(I)alamin ad 93.7 0.22 4.9E-06 31.5 4.9 66 8-74 86-157 (173)
494 PF12846 AAA_10: AAA-like doma 93.7 0.15 3.1E-06 33.5 4.2 48 16-63 219-267 (304)
495 COG4938 Uncharacterized conser 93.6 0.16 3.4E-06 35.1 4.3 48 14-61 256-304 (374)
496 PTZ00454 26S protease regulato 93.3 0.58 1.3E-05 33.2 6.8 53 9-62 230-297 (398)
497 TIGR00929 VirB4_CagE type IV s 93.1 0.21 4.5E-06 37.7 4.7 46 15-61 627-674 (785)
498 PRK14087 dnaA chromosomal repl 92.7 0.51 1.1E-05 33.9 6.1 49 11-59 200-249 (450)
499 PRK04296 thymidine kinase; Pro 92.7 1.6 3.5E-05 27.5 7.8 52 17-73 78-141 (190)
500 TIGR03881 KaiC_arch_4 KaiC dom 92.3 0.45 9.9E-06 30.5 5.0 56 17-72 121-188 (229)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=9.9e-32 Score=172.58 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=77.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~- 78 (85)
||||+|||+|||||+.+|+++++|||||+|||+...+++..+.....+|.|.++|||++.++.. +|||++|++|.+..
T Consensus 138 SGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred CcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 7999999999999999999999999999999999999998766666789999999999999865 89999999997764
Q ss_pred CcccccC
Q psy1506 79 GWVEEIL 85 (85)
Q Consensus 79 g~~~~~~ 85 (85)
|+|++++
T Consensus 218 g~p~~~f 224 (240)
T COG1126 218 GPPEEFF 224 (240)
T ss_pred cCHHHHh
Confidence 8887753
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=165.83 Aligned_cols=85 Identities=31% Similarity=0.406 Sum_probs=75.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeecC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTSG 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~g 79 (85)
|+||+||+.|||||+++|++++|||||+|+|+.++..+++.+.+...+|+||++||||++.+ .++|++++|++..+..|
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G 220 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASG 220 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEecc
Confidence 89999999999999999999999999999999999988876555555699999999999986 67999999988777779
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 221 ~~~~~~ 226 (254)
T COG1121 221 PPEEVL 226 (254)
T ss_pred Chhhcc
Confidence 988763
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.8e-30 Score=170.82 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=76.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||||||+|||||+.+|++|+.|||||+|||++.+.+++.+....++ |.|+++|||.++.++ .|||+.+|++|++++
T Consensus 143 SGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred CcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 799999999999999999999999999999999999999776554443 899999999999986 599999999999986
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+..+++
T Consensus 223 ~G~v~~vF 230 (339)
T COG1135 223 EGTVSEVF 230 (339)
T ss_pred eccHHHhh
Confidence 8877653
No 4
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=163.44 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
||||+||++|||||..+|+++|+|||||+||...+..++..+....+ .+.|.++||||+..+.+ |||+++|++|++++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence 79999999999999999999999999999999999999877655443 36799999999999875 99999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
++.+++
T Consensus 223 ~~~~~~l 229 (252)
T COG1124 223 IGPTEEL 229 (252)
T ss_pred eechhhh
Confidence 666554
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.2e-28 Score=158.46 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~ 77 (85)
||||+|||+|||||+++|++++.||||++||.++.+.++..+.+...+ |.|+|+||||+.....|||++.+++|++.
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 799999999999999999999999999999999999999876665544 88999999999999999999999999854
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-28 Score=155.50 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
||||||||++||||+++|++++|||||+|||..+.+.+.+.+.+...+|+++++.||.++++. .||+++++++|.++.
T Consensus 135 S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 799999999999999999999999999999999877776554444456999999999999986 799999999998875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++.+
T Consensus 215 gs~~~l 220 (245)
T COG4555 215 GSIEAL 220 (245)
T ss_pred CCHHHH
Confidence 776643
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=5.3e-28 Score=159.22 Aligned_cols=85 Identities=26% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||||+.|||||+.+|++++|||||++||...+-++++.+.+... +|.|+|++.||++.. .+||++++|++|++..
T Consensus 140 SGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 140 SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 79999999999999999999999999999999999999987665553 489999999999875 7899999999999875
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|.|++++
T Consensus 220 ~G~p~evl 227 (258)
T COG1120 220 QGTPEEVL 227 (258)
T ss_pred ecCcchhc
Confidence 9998864
No 8
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.7e-28 Score=158.10 Aligned_cols=84 Identities=26% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++||.+|+.+|++++|||||++||+...+.+++.+.+...+ |.|+|++|||++.+ .+||++++|++|++..
T Consensus 140 SGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 140 SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred CCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 899999999999999999999999999999999999998765555445 68999999999987 5699999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+|+++
T Consensus 220 ~g~p~~i 226 (235)
T COG1122 220 DGDPAEI 226 (235)
T ss_pred cCCHHHH
Confidence 887765
No 9
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=3.6e-28 Score=177.21 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||++++|++++||||||+||+.+.+.+.+. +..+..|+|+|+++|++..+.+||++++|++|++.. |
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 79999999999999999999999999999999988888766 455677899999999999999999999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+|+
T Consensus 690 s~~el 694 (709)
T COG2274 690 SHEEL 694 (709)
T ss_pred CHHHH
Confidence 88775
No 10
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=6.8e-28 Score=158.27 Aligned_cols=85 Identities=26% Similarity=0.302 Sum_probs=74.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~ 78 (85)
||||.|||.+||||+.+|++++|||||++|||-++..+-+.+....++ ++|+|+||||+++ +..+||+.+|++|++..
T Consensus 137 SGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred CcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 799999999999999999999999999999999888887766554444 8999999999987 57799999999999874
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
++|++++
T Consensus 217 ~~~P~~il 224 (309)
T COG1125 217 YDTPDEIL 224 (309)
T ss_pred eCCHHHHH
Confidence 8887753
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=7.2e-28 Score=172.32 Aligned_cols=83 Identities=24% Similarity=0.381 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||++++|+++|||||||+||+++.+.+.+. +....+++|+|++||+++.+..+|+|+++++|++.+ |
T Consensus 487 SGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence 79999999999999999999999999999999998888765 455567899999999999999999999999999876 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 566 ~~~eL 570 (588)
T PRK11174 566 DYAEL 570 (588)
T ss_pred CHHHH
Confidence 87765
No 12
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=159.78 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
||||+||+.||.|++.+|+++|.||||++||...+.++++.+.+..+ .|.++|+||||+..+ ..||+|++|..|++++
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 79999999999999999999999999999999999999877655444 489999999999986 5699999999999987
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|++++++
T Consensus 235 ~g~~~~i~ 242 (316)
T COG0444 235 EGPVEEIF 242 (316)
T ss_pred eCCHHHHh
Confidence 8887763
No 13
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=1.6e-27 Score=162.56 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++++||||++||+.+...+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++.+
T Consensus 142 SgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888765544444 89999999999987 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 222 ~g~~~~v 228 (343)
T TIGR02314 222 QGTVSEI 228 (343)
T ss_pred EcCHHHH
Confidence 776654
No 14
>KOG0055|consensus
Probab=99.94 E-value=1.1e-27 Score=179.78 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=76.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
||||||||+|||||+++|+|||||||||+||++. +++.+..+....+|+|.|+|+|+++.++++|++++|++|++++ |
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 7999999999999999999999999999999985 4555666778889999999999999999999999999999987 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+++|++
T Consensus 570 ~h~ELi 575 (1228)
T KOG0055|consen 570 THDELI 575 (1228)
T ss_pred CHHHHH
Confidence 998864
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=155.32 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=68.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g 74 (85)
|||||||++|||||+.+|++++|||||++||.-++..+.+.+.+.|.+ +.|+++||||.++. ..+|||++|.++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 899999999999999999999999999999999999998888887764 78999999999885 569999999984
No 16
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.4e-27 Score=159.35 Aligned_cols=85 Identities=27% Similarity=0.333 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~ 78 (85)
||||+|||.|||||..+|+|++||||||+|||-.+.++..++++...+ ++||++||||+++ ++..|||.+|++|+++.
T Consensus 166 SGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 166 SGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred cchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 799999999999999999999999999999999888887776655443 7899999999987 57799999999999986
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+|+|++
T Consensus 246 ~Gtp~eIl 253 (386)
T COG4175 246 VGTPEEIL 253 (386)
T ss_pred eCCHHHHH
Confidence 9999874
No 17
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.1e-27 Score=152.17 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus 138 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 138 SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence 79999999999999999999999999999999988888776544444 3789999999999864 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 218 ~g~~~~~ 224 (235)
T cd03261 218 EGTPEEL 224 (235)
T ss_pred ecCHHHH
Confidence 666543
No 18
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=4.7e-27 Score=161.20 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.....+ ++|+|++||+++++ ..||++++|++|++..
T Consensus 131 SGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 131 SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 799999999999999999999999999999999999888776554443 89999999999875 6699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 211 ~g~~~ei 217 (363)
T TIGR01186 211 VGTPDEI 217 (363)
T ss_pred eCCHHHH
Confidence 877664
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=5.8e-27 Score=157.57 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+++|++++|||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 140 S~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999888887665444346899999999999874 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 220 g~~~~l 225 (306)
T PRK13537 220 GAPHAL 225 (306)
T ss_pred CCHHHH
Confidence 777654
No 20
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=7.2e-27 Score=156.65 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 126 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 799999999999999999999999999999999888887665444446899999999999875 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 206 g~~~~l 211 (302)
T TIGR01188 206 GTPEEL 211 (302)
T ss_pred CCHHHH
Confidence 776553
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.6e-27 Score=160.45 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|+|||+.+.+ ..||++++|++|++..
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 799999999999999999999999999999999988888766544444 88999999999876 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 216 ~g~~~~~ 222 (356)
T PRK11650 216 IGTPVEV 222 (356)
T ss_pred ECCHHHH
Confidence 887765
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=6.2e-27 Score=152.32 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
||||++|++||||++.+|+++++||||+||||-....+- .++...++ +.|+++||||++.+ ..||+++++.+|++.
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 799999999999999999999999999999998766554 45555443 78999999999886 568999999999997
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
+ |+++++
T Consensus 226 ~~Gt~~el 233 (263)
T COG1127 226 AEGTPEEL 233 (263)
T ss_pred EeCCHHHH
Confidence 5 988875
No 23
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-27 Score=158.66 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|+||||++.+. .||++++|++|++++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999998888766554443 889999999999874 699999999999975
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 240 ~g~~~~i 246 (330)
T PRK15093 240 TAPSKEL 246 (330)
T ss_pred ECCHHHH
Confidence 776554
No 24
>KOG0058|consensus
Probab=99.94 E-value=4.5e-27 Score=169.54 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
||||||||+|||||+++|+||||||.||+||.+ .+.+.++.+....+++|+++|.|+++.++.+|+|+++++|++.+ |
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDae-SE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAE-SEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchh-hHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 799999999999999999999999999999998 45555666766677899999999999999999999999999987 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+.+|++
T Consensus 685 ~h~eLl 690 (716)
T KOG0058|consen 685 THDELL 690 (716)
T ss_pred cHHHHh
Confidence 777753
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-27 Score=152.78 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
||||.||++|||||+.+|++||||||||+|||-...++ ++++..+++..||++|||+++... .+|+..++..|++++
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 79999999999999999999999999999999877766 566777778899999999998764 589999999999886
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 230 g~T~~i 235 (253)
T COG1117 230 GPTDKI 235 (253)
T ss_pred cCHHhh
Confidence 887765
No 26
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=1.4e-26 Score=149.31 Aligned_cols=83 Identities=27% Similarity=0.251 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...+ .|+|++||+++.+ ..||++++|++|++..
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 789999999999999999999999999999999888887665444344 8999999999986 4699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 222 g~~~~~ 227 (227)
T cd03260 222 GPTEQI 227 (227)
T ss_pred cCcccC
Confidence 777664
No 27
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6e-27 Score=156.68 Aligned_cols=85 Identities=25% Similarity=0.268 Sum_probs=74.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||+++||||+.+|++|+||||+++||.+.++.+-.++.+...+ |.|.++||||.++. ..+|||++|++|+|..
T Consensus 139 SGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred ChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 799999999999999999999999999999999888777665554444 88999999999875 6799999999999875
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+++|++
T Consensus 219 vg~p~ev~ 226 (345)
T COG1118 219 VGPPDEVY 226 (345)
T ss_pred eCCHHHHh
Confidence 8888763
No 28
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=9.4e-27 Score=155.95 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+|||||++||+||+++|+++||||||+||||..+..+++.+.....++ .||+++||.++.+. .||++++|++|++..
T Consensus 138 S~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 138 SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 7899999999999999999999999999999999888887765555566 79999999999875 499999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 218 ~g~~~~ 223 (293)
T COG1131 218 EGTPEE 223 (293)
T ss_pred eCCHHH
Confidence 76654
No 29
>KOG0055|consensus
Probab=99.94 E-value=4.4e-27 Score=176.65 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=77.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||+++||+||||||.||+||.+ ++++.++.+.....|+|.|+|.|+++.+++||.|.++++|++.+ |
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDse-SErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSE-SERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhh-hHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 799999999999999999999999999999998 56676777888888999999999999999999999999999987 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+.++++
T Consensus 1207 tH~~L~ 1212 (1228)
T KOG0055|consen 1207 THDELL 1212 (1228)
T ss_pred cHHHHH
Confidence 887763
No 30
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=5.9e-27 Score=167.25 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++||||||+||+++.+.+.+.+. ...+++|+++|+|+++.+..+|+|++|++|++.+ |
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 7899999999999999999999999999999998888876654 4447789999999999998899999999999876 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 546 ~h~eLl 551 (567)
T COG1132 546 THEELL 551 (567)
T ss_pred CHHHHH
Confidence 988763
No 31
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=6.6e-27 Score=165.68 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=76.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|||||||+.+|+||+++|++||+||||++||+.++.++++.+..... .|.++++||||+..+. .||++++|++|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 79999999999999999999999999999999999999877655443 5899999999999975 599999999999986
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|++++++
T Consensus 236 ~G~~~~i~ 243 (539)
T COG1123 236 TGPTEEIL 243 (539)
T ss_pred ecCHHHHH
Confidence 9888764
No 32
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.2e-27 Score=157.79 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+... .|.|+|++|||++.+ ..||++++|++|++++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999988876655444 488999999999987 4699999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 235 ~g~~~~~ 241 (326)
T PRK11022 235 TGKAHDI 241 (326)
T ss_pred ECCHHHH
Confidence 776554
No 33
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=7.5e-27 Score=170.07 Aligned_cols=81 Identities=26% Similarity=0.337 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++||||||+||+.+.+.+++.+.+ .++|+|++||+++.+..+|++++|++|++.+ |
T Consensus 617 SGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 79999999999999999999999999999999999988876543 4789999999999998999999999999985 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 694 ~~~~L 698 (710)
T TIGR03796 694 THEEL 698 (710)
T ss_pred CHHHH
Confidence 87765
No 34
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=1.4e-26 Score=150.01 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+. .||++++|++|++..
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 789999999999999999999999999999999888887765443346889999999999874 599999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 225 ~~~~~~ 230 (236)
T cd03219 225 GTPDEV 230 (236)
T ss_pred cCHHHh
Confidence 766553
No 35
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=154.63 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.++..+.+.+.....+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 146 SgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999988888765443334589999999999987 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 226 g~~~~~ 231 (288)
T PRK13643 226 GTPSDV 231 (288)
T ss_pred CCHHHH
Confidence 777654
No 36
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1e-26 Score=164.74 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||||+.+|+++++|||+|+||+..+..+++.+.+...+ |.|.++||||+.++.. ||||++|++|++++
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE 510 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE 510 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE
Confidence 799999999999999999999999999999999999998876555444 8999999999999865 99999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+.+++
T Consensus 511 ~G~~~~v 517 (539)
T COG1123 511 EGPTEKV 517 (539)
T ss_pred eCCHHHH
Confidence 866654
No 37
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=1e-26 Score=157.78 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|+||||+..+. .||++++|++|++++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888765544443 889999999999875 699999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 243 ~g~~~~i 249 (330)
T PRK09473 243 YGNARDV 249 (330)
T ss_pred ECCHHHH
Confidence 877654
No 38
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=8.2e-27 Score=166.62 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=74.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+++...+++.+ ....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 799999999999999999999999999999999988887665 44456799999999999888999999999999876 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 561 ~~~~l 565 (582)
T PRK11176 561 THAEL 565 (582)
T ss_pred CHHHH
Confidence 77664
No 39
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=9.2e-27 Score=166.83 Aligned_cols=83 Identities=14% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+++.+.+.+.+ ..+.+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l-~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEc
Confidence 789999999999999999999999999999999988887654 44556799999999999998999999999999886 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 557 ~~~~L 561 (592)
T PRK10790 557 THQQL 561 (592)
T ss_pred CHHHH
Confidence 87765
No 40
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=150.20 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+++.+.+... .|.|+|++||+++.+. .||++++|++|++..
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 78999999999999999999999999999999988888776554434 3789999999999875 699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 226 ~~~~~~ 231 (241)
T cd03256 226 DGPPAE 231 (241)
T ss_pred ecCHHH
Confidence 66554
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=9.7e-27 Score=159.60 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+...+.+...+ |.|+|++||+++++ ..+|++++|++|++.
T Consensus 139 SgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 139 SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 789999999999999999999999999999999888888765544444 78999999999886 569999999999987
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
. |+++++
T Consensus 219 ~~g~~~~~ 226 (362)
T TIGR03258 219 AHGEPQAL 226 (362)
T ss_pred EEcCHHHH
Confidence 5 887765
No 42
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=159.01 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+..++.+...+.+...+ +.|+|+|||+.+++ ..+|++++|++|++..
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988887765544443 78999999999886 6799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 218 ~g~~~~~ 224 (351)
T PRK11432 218 IGSPQEL 224 (351)
T ss_pred EcCHHHH
Confidence 887765
No 43
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=146.53 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=77.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~- 78 (85)
|+||.||++|||||+.+|+++++|||||+|||+...+++..+.....+|+|.++|||.+.+.+. +.+++++++|.+.+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 7999999999999999999999999999999999999987655556689999999999999876 79999999999976
Q ss_pred CcccccC
Q psy1506 79 GWVEEIL 85 (85)
Q Consensus 79 g~~~~~~ 85 (85)
|+|++++
T Consensus 234 G~P~qvf 240 (256)
T COG4598 234 GPPEQVF 240 (256)
T ss_pred CChHHHh
Confidence 9988764
No 44
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=9.9e-27 Score=169.20 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 799999999999999999999999999999999988887664 44556899999999999998999999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 682 ~~~eL 686 (694)
T TIGR03375 682 PKDQV 686 (694)
T ss_pred CHHHH
Confidence 88775
No 45
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.6e-26 Score=155.49 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.....+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 167 SgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~ 246 (305)
T PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD 246 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999988888766544444589999999999876 5799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 247 g~~~~~ 252 (305)
T PRK13651 247 GDTYDI 252 (305)
T ss_pred CCHHHH
Confidence 776654
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=147.96 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus 133 S~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 133 SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 799999999999999999999999999999999888887665544444 789999999999875 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
++++++
T Consensus 213 ~~~~~~~ 219 (220)
T cd03265 213 EGTPEEL 219 (220)
T ss_pred eCChHHc
Confidence 666553
No 47
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=1.6e-26 Score=155.10 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999988887765544446889999999999874 699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 217 g~~~~~ 222 (303)
T TIGR01288 217 GRPHAL 222 (303)
T ss_pred cCHHHH
Confidence 766553
No 48
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-26 Score=156.13 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.....+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 79999999999999999999999999999999988888766544444689999999999976 5799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 258 g~~~~~ 263 (320)
T PRK13631 258 GTPYEI 263 (320)
T ss_pred CCHHHH
Confidence 777653
No 49
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-26 Score=156.94 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|+||||++||..+...+++.+.+... .|.|+|+||||+..+. .||++++|++|++++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999988876655444 3889999999999985 599999999999876
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 236 ~g~~~~~ 242 (327)
T PRK11308 236 KGTKEQI 242 (327)
T ss_pred ECCHHHH
Confidence 776654
No 50
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=153.99 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.++..+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 146 SgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988887765444343 88999999999986 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 226 ~g~~~~~ 232 (287)
T PRK13637 226 QGTPREV 232 (287)
T ss_pred ECCHHHH
Confidence 776653
No 51
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=1.2e-26 Score=168.55 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++||||||+||+.+.+.+.+.+.+ . ++|+|+|||+++.+..+|+|++|++|++.+ |
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER-L--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-h--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 79999999999999999999999999999999998888776533 3 579999999999998999999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 667 ~~~~L 671 (686)
T TIGR03797 667 TYDEL 671 (686)
T ss_pred CHHHH
Confidence 87765
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=1.5e-26 Score=157.14 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ +.|+|+||||+..+. .||++++|++|++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888765544443 889999999999875 599999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 243 ~g~~~~i 249 (331)
T PRK15079 243 LGTYDEV 249 (331)
T ss_pred EcCHHHH
Confidence 776554
No 53
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=149.61 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 139 S~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 78999999999999999999999999999999988888766544444689999999999876 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 219 ~~~~~~ 224 (237)
T PRK11614 219 DTGDAL 224 (237)
T ss_pred CCHHHH
Confidence 776653
No 54
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=1.9e-26 Score=157.06 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+++|+++||||||+|||+.++..+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999988888765554446899999999999874 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 254 g~~~~l 259 (340)
T PRK13536 254 GRPHAL 259 (340)
T ss_pred cCHHHH
Confidence 777654
No 55
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=2.3e-26 Score=149.53 Aligned_cols=83 Identities=22% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 799999999999999999999999999999999888887665444343 78999999999987 5699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 227 ~~~~~~ 232 (243)
T TIGR02315 227 DGAPSE 232 (243)
T ss_pred cCCHHH
Confidence 76654
No 56
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=2.6e-26 Score=147.20 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus 140 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 140 SGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 789999999999999999999999999999999888887665443345889999999999875 6999999999864
No 57
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.2e-26 Score=149.59 Aligned_cols=84 Identities=24% Similarity=0.266 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 789999999999999999999999999999999888887665444443 78999999999876 5699999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 218 ~~~~~~~ 224 (239)
T cd03296 218 VGTPDEV 224 (239)
T ss_pred ecCHHHH
Confidence 666543
No 58
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1.9e-26 Score=157.71 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+..++.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988887765544444 78999999999886 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 218 ~g~~~~i 224 (353)
T PRK10851 218 AGTPDQV 224 (353)
T ss_pred EcCHHHH
Confidence 877664
No 59
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=152.78 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.....+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 147 SgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 79999999999999999999999999999999988888766544334589999999999986 5699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 227 g~~~~ 231 (287)
T PRK13641 227 ASPKE 231 (287)
T ss_pred CCHHH
Confidence 76654
No 60
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1.9e-26 Score=157.73 Aligned_cols=84 Identities=30% Similarity=0.347 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++||||+++||+..+..+.+.+.+...+ +.|+|+|||+.+++ ..||++++|++|++..
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~ 215 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ 215 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999888887765544443 78999999999886 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 216 ~g~~~~~ 222 (353)
T TIGR03265 216 VGTPQEI 222 (353)
T ss_pred EcCHHHH
Confidence 887765
No 61
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=2.5e-26 Score=145.12 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+|||||+++||+|+++-+|++||||||+|||.-+.++...+.+... ++.|+++|||.++.+. .+++++++++|++.+
T Consensus 131 SGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred CchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 79999999999999999999999999999999998888876555554 4789999999999874 689999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+.+++
T Consensus 211 ~g~~~~~ 217 (231)
T COG3840 211 QGSTQEL 217 (231)
T ss_pred eccHHHH
Confidence 776654
No 62
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=3.8e-26 Score=149.11 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++..
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654443345889999999999874 699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 226 ~~~~~ 230 (250)
T PRK11264 226 GPAKA 230 (250)
T ss_pred CCHHH
Confidence 66554
No 63
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-26 Score=152.31 Aligned_cols=84 Identities=21% Similarity=0.168 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+ |.|+|++||+++.+..||++++|++|++..
T Consensus 142 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999888887665444444 899999999998876799999999999874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 222 g~~~~~ 227 (279)
T PRK13650 222 STPREL 227 (279)
T ss_pred CCHHHH
Confidence 776553
No 64
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=2.7e-26 Score=158.00 Aligned_cols=84 Identities=26% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++|||||+++||+..++.+...+.+...+ +.|+|+|||+..++ ..+|++++|++|++..
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999888887765544443 88999999999885 6799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 226 ~g~~~~i 232 (375)
T PRK09452 226 DGTPREI 232 (375)
T ss_pred EcCHHHH
Confidence 777664
No 65
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-26 Score=158.08 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999888887665444443 78999999999876 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 215 ~g~~~~i 221 (369)
T PRK11000 215 VGKPLEL 221 (369)
T ss_pred EcCHHHH
Confidence 777654
No 66
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.6e-26 Score=151.59 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+|.|+|++||+++.+..||++++|++|++.. |
T Consensus 138 S~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887665443346899999999999887799999999999865 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 218 ~~~~~ 222 (274)
T PRK13644 218 EPENV 222 (274)
T ss_pred CHHHH
Confidence 76553
No 67
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4e-26 Score=146.06 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 78999999999999999999999999999999988888776544434 388999999999886 4699999999998753
No 68
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-26 Score=155.56 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++.+
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~-~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEE-LILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998887655 45555567999999999999765 99999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 306 g~~~~l 311 (329)
T PRK14257 306 GETKTI 311 (329)
T ss_pred CCHHHH
Confidence 888765
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=3.7e-26 Score=147.68 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 135 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 135 SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 78999999999999999999999999999999988888765544334588999999999876 5699999999998864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 215 ~~~~~ 219 (232)
T cd03218 215 GTPEE 219 (232)
T ss_pred eCHHH
Confidence 66554
No 70
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=5.7e-26 Score=144.76 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+++.+. .||++++|++|+++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 789999999999999999999999999999999888887655443356889999999999875 69999999999763
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.3e-26 Score=151.19 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 140 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999998888766544444589999999999987 5799999999999875
Q ss_pred Cccc
Q psy1506 79 GWVE 82 (85)
Q Consensus 79 g~~~ 82 (85)
|+++
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 6654
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.2e-26 Score=152.88 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.....+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 147 SgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988887665444343 88999999999986 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 776653
No 73
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=3.5e-26 Score=148.28 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus 140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH-DICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQG 218 (237)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEc
Confidence 7899999999999999999999999999999998888876654 4445889999999999887799999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 219 ~~~~~ 223 (237)
T cd03252 219 SHDEL 223 (237)
T ss_pred CHHHH
Confidence 66543
No 74
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=3.8e-26 Score=148.38 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. . ||++++|++|++..
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 789999999999999999999999999999999888887665444345789999999999875 4 79999999998865
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 226 ~g~~~~ 231 (243)
T TIGR01978 226 SGDVEL 231 (243)
T ss_pred ecCHHH
Confidence 66653
No 75
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=2.8e-26 Score=155.27 Aligned_cols=84 Identities=25% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 102 SgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 102 SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999888887765544444 78999999999886 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 182 ~g~~~~~ 188 (325)
T TIGR01187 182 IGTPEEI 188 (325)
T ss_pred EcCHHHH
Confidence 777654
No 76
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=3.6e-26 Score=158.52 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+|||||++|||||+++|+++||||||++||+..+..+++.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 141 SgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999988888766544444688999999999987 5799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 221 G~~~ev 226 (402)
T PRK09536 221 GPPADV 226 (402)
T ss_pred cCHHHH
Confidence 887764
No 77
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=156.10 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 142 SgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988888765444343 789999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 222 ~g~~~~~ 228 (343)
T PRK11153 222 QGTVSEV 228 (343)
T ss_pred EcCHHHH
Confidence 766543
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=4e-26 Score=146.60 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 134 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 78999999999999999999999999999999988888776544434678999999999986 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 214 ~~~~~~ 219 (222)
T cd03224 214 GTAAEL 219 (222)
T ss_pred CCHHHH
Confidence 666543
No 79
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-26 Score=162.98 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=75.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||+++||||++++++++|||||++||.++.+.+.+. +....+++|++++||++..+..+|+|++|++|++.+ |
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g 536 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQG 536 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccC
Confidence 78999999999999999999999999999999987777654 556667799999999999999999999999999886 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
.++++
T Consensus 537 ~~~~L 541 (559)
T COG4988 537 THEEL 541 (559)
T ss_pred CHHHH
Confidence 87765
No 80
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.9e-26 Score=150.52 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 138 SgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 138 SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999988888766544444588999999999987 4699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 218 g~~~~ 222 (271)
T PRK13638 218 GAPGE 222 (271)
T ss_pred CCHHH
Confidence 76654
No 81
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=149.44 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887665443345899999999999876 599999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 234 ~~~~~ 238 (257)
T PRK10619 234 GAPEQ 238 (257)
T ss_pred CCHHH
Confidence 66554
No 82
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-26 Score=158.51 Aligned_cols=85 Identities=26% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY-LNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~ 78 (85)
|+||+|||+|||||+.+|+++|||||+|+||.+.+..+..++.+... .|.|.|+||||.++ +..+|||++|++|++..
T Consensus 138 SGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred ChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 79999999999999999999999999999999988888777655544 38999999999876 57899999999999986
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+|++++
T Consensus 218 ~gtP~eiY 225 (352)
T COG3842 218 VGTPEEIY 225 (352)
T ss_pred cCCHHHHh
Confidence 9998864
No 83
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=3.7e-26 Score=147.94 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .+|++++|++|++..
T Consensus 127 S~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444443 789999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 207 ~~~~~~~ 213 (230)
T TIGR02770 207 RGTVKEI 213 (230)
T ss_pred eCCHHHH
Confidence 666553
No 84
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.93 E-value=3.3e-26 Score=166.75 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+++.+.+.+.+.+ . +++|+|+|||+++.+..+|++++|++|++.+ |
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 79999999999999999999999999999999998888776543 3 5789999999999988999999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 691 ~~~~L 695 (708)
T TIGR01193 691 SHDEL 695 (708)
T ss_pred CHHHH
Confidence 87765
No 85
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.5e-26 Score=149.17 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||.|||+|||||+.+|+++|.|||+++|||.+++.+++.+.+... .|.|+|+..|+.+.. .+|+|++-|++|++++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 79999999999999999999999999999999999999987665544 589999999999986 6799999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 229 Dg~~~el 235 (258)
T COG3638 229 DGPASEL 235 (258)
T ss_pred eCChhhh
Confidence 887664
No 86
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=4.8e-26 Score=146.04 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... ++.|+|++||+++.+..||++++|++|++
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 78999999999999999999999999999999988888766544434 47899999999988778999999999863
No 87
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=2.5e-26 Score=167.73 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|+++|||||||+||+++.+.+.+ ....+++|+|+|||+++.+..+|+|++|++|++.+ |
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 7899999999999999999999999999999998777765 22346789999999999988899999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 696 t~~eL 700 (711)
T TIGR00958 696 THKQL 700 (711)
T ss_pred CHHHH
Confidence 88765
No 88
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=7.3e-26 Score=141.34 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=67.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+.+.+..||++++|++|++
T Consensus 98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 7899999999999999999999999999999998888877654443458899999999988777999999999863
No 89
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=7.9e-26 Score=144.72 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|.+.
T Consensus 134 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~~ 211 (213)
T cd03235 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211 (213)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEee
Confidence 789999999999999999999999999999999888887765444446889999999999874 68999999987544
No 90
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=6.7e-26 Score=146.92 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=70.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 116 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 789999999999999999999999999999999888887765544443 78999999999886 4699999999998864
Q ss_pred -Ccc
Q psy1506 79 -GWV 81 (85)
Q Consensus 79 -g~~ 81 (85)
|++
T Consensus 196 ~~~~ 199 (230)
T TIGR01184 196 IGQI 199 (230)
T ss_pred ccCc
Confidence 554
No 91
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=3.7e-26 Score=163.72 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
||||+||++||||++++|++++||||||+||+.+.+.+++.+. ...+++|+|+|||+++.++.+|++++|++|++.+ |
T Consensus 473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~-~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-HHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence 7999999999999999999999999999999999888876654 4446799999999999888999999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 552 ~~~~l 556 (588)
T PRK13657 552 SFDEL 556 (588)
T ss_pred CHHHH
Confidence 76654
No 92
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=6.2e-26 Score=147.27 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... +|.|+|++||+++.+..||++++|++|++..
T Consensus 134 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 134 NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 78999999999999999999999999999999998888876544433 4789999999999876799999999998865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
+++++
T Consensus 214 ~~~~~ 218 (236)
T TIGR03864 214 GAAAE 218 (236)
T ss_pred CCHHH
Confidence 66543
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=6.9e-26 Score=145.54 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+..+|++++|++|++.
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 78999999999999999999999999999999988888766544433 378999999999887778999999999764
No 94
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=5.8e-26 Score=147.62 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+++.+. .||++++|++|++..
T Consensus 138 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 138 SGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 789999999999999999999999999999999888887654443345889999999999875 599999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 218 g~~~~ 222 (240)
T PRK09493 218 GDPQV 222 (240)
T ss_pred CCHHH
Confidence 66554
No 95
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=5.2e-26 Score=161.87 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++....+|++++|++|++.+ |
T Consensus 456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 799999999999999999999999999999999888887665433336789999999998888899999999999876 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 536 ~~~~l 540 (544)
T TIGR01842 536 ERDEV 540 (544)
T ss_pred CHHHH
Confidence 77664
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5e-26 Score=150.47 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus 162 S~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 162 SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544333 378999999999886 5699999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 242 ~g~~~~~ 248 (269)
T cd03294 242 VGTPEEI 248 (269)
T ss_pred eCCHHHH
Confidence 665543
No 97
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3e-26 Score=155.60 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~ 78 (85)
||||+|||++||||+++|++++||||+|+||++.+..+..++.+..++ +.|+|+||||..+ +..+||+.+|++|++..
T Consensus 135 SGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 135 SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred ChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 799999999999999999999999999999999888887776554443 7899999999866 56799999999999975
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+|.+++
T Consensus 215 ~g~p~ely 222 (338)
T COG3839 215 VGTPLELY 222 (338)
T ss_pred cCChHHHh
Confidence 9888763
No 98
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=150.46 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 147 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 147 SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999988888776544434578999999999987 4699999999999864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 227 g~~~~~ 232 (280)
T PRK13649 227 GKPKDI 232 (280)
T ss_pred CCHHHH
Confidence 766543
No 99
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.9e-26 Score=151.11 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|++++||+++.+. .||++++|++|++.+
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444443 899999999999875 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 223 ~g~~~~~ 229 (283)
T PRK13636 223 QGNPKEV 229 (283)
T ss_pred eCCHHHH
Confidence 776653
No 100
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.2e-26 Score=148.32 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH-ELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 7899999999999999999999999999999998888876654 445678999999999987 5699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 227 ~~~~~~ 232 (250)
T PRK14245 227 DDTKKI 232 (250)
T ss_pred CCHHHH
Confidence 776654
No 101
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.93 E-value=5.6e-26 Score=156.74 Aligned_cols=84 Identities=29% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+++.+.+...+ ++|+|++||+++++ ..+|++++|++|++..
T Consensus 166 SgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 166 SGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888776655443 89999999999986 6799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 246 ~g~~~ei 252 (382)
T TIGR03415 246 HGTPEEI 252 (382)
T ss_pred ecCHHHH
Confidence 877664
No 102
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=6.7e-26 Score=148.81 Aligned_cols=84 Identities=13% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+.+.+. .||++++|++|++..
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 799999999999999999999999999999999888887665443333 789999999999985 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 233 ~~~~~~~ 239 (258)
T PRK11701 233 SGLTDQV 239 (258)
T ss_pred eCCHHHH
Confidence 766553
No 103
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=3.9e-26 Score=162.65 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|+|||++.....||+++++++|++.. |
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeC
Confidence 799999999999999999999999999999999999887665 44556799999999998888999999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 550 ~~~~l 554 (571)
T TIGR02203 550 THNEL 554 (571)
T ss_pred CHHHH
Confidence 76654
No 104
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.2e-26 Score=146.84 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+.....+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444444 889999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 222 ~~~~~~~ 228 (233)
T cd03258 222 EGTVEEV 228 (233)
T ss_pred ecCHHHH
Confidence 665543
No 105
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-26 Score=156.77 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+... .+.|+|++||+.+++ ..+|++++|++|++..
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 79999999999999999999999999999999988888766554444 478999999999885 6799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 231 ~g~~~~~ 237 (377)
T PRK11607 231 IGEPEEI 237 (377)
T ss_pred EcCHHHH
Confidence 887765
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=151.16 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus 147 SgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544333 489999999999986 5699999999999874
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 776553
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=9.8e-26 Score=145.18 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=68.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 789999999999999999999999999999999888887665444444 789999999999875 699999999998753
No 108
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=8.1e-26 Score=144.37 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=66.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|+
T Consensus 136 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 799999999999999999999999999999999988888765444445889999999999875 499999999874
No 109
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=6.5e-26 Score=149.86 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665443333 789999999998874 599999999999865
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 225 ~g~~~~~ 231 (269)
T PRK11831 225 HGSAQAL 231 (269)
T ss_pred eCCHHHH
Confidence 666543
No 110
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=1.7e-25 Score=138.82 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~ 77 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+. .||+++++++|++.
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 789999999999999999999999999999999888887665443345889999999998764 59999999999875
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=8.3e-26 Score=149.03 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 789999999999999999999999999999999888887665444443 789999999999875 699999999998865
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 232 ~g~~~~~ 238 (265)
T TIGR02769 232 ECDVAQL 238 (265)
T ss_pred ECCHHHH
Confidence 776654
No 112
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=6.7e-26 Score=162.31 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+++.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l-~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 789999999999999999999999999999999988887654 44456899999999999988899999999999876 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 556 ~~~~l 560 (574)
T PRK11160 556 THQEL 560 (574)
T ss_pred CHHHH
Confidence 87765
No 113
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=144.93 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=68.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEc--Ccee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLN--NVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~--~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|+ +|++
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI 212 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEE
Confidence 79999999999999999999999999999999998888876554434 478999999999876 5699999999 7988
Q ss_pred ec
Q psy1506 77 TS 78 (85)
Q Consensus 77 ~~ 78 (85)
..
T Consensus 213 ~~ 214 (220)
T cd03293 213 VA 214 (220)
T ss_pred EE
Confidence 65
No 114
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.4e-26 Score=147.60 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 799999999999999999999999999999999888887665544444 78999999999987 5699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 235 ~~~~~~ 240 (255)
T PRK11300 235 NGTPEE 240 (255)
T ss_pred cCCHHH
Confidence 66554
No 115
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.5e-26 Score=154.91 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 130 SgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 789999999999999999999999999999999888887665444444 78999999999876 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 210 ~g~~~~i 216 (352)
T PRK11144 210 FGPLEEV 216 (352)
T ss_pred ecCHHHH
Confidence 777654
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=147.56 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.....++.|+|++||+++.+ ..||++++|++|++..
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 79999999999999999999999999999999988888766544334588999999999986 4699999999998864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 220 ~~~~~~ 225 (255)
T PRK11231 220 GTPEEV 225 (255)
T ss_pred cCHHHh
Confidence 665543
No 117
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.7e-26 Score=150.53 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544433 378999999999886 5699999999999864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 232 ~g~~~~ 237 (289)
T PRK13645 232 IGSPFE 237 (289)
T ss_pred eCCHHH
Confidence 66554
No 118
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=8.8e-26 Score=150.16 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus 140 S~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l-~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g 218 (275)
T cd03289 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYD 218 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH-HHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecC
Confidence 689999999999999999999999999999999887776554 44456899999999998877799999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 219 ~~~~l 223 (275)
T cd03289 219 SIQKL 223 (275)
T ss_pred CHHHH
Confidence 88775
No 119
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=1.4e-25 Score=143.14 Aligned_cols=78 Identities=23% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+. .+|++++|++|++..
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887665444446789999999999875 699999999998764
No 120
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=9.4e-26 Score=147.24 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ-ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 444458999999999986 4699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 225 ~~~~~ 229 (247)
T TIGR00972 225 GPTEQ 229 (247)
T ss_pred CCHHH
Confidence 66654
No 121
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=147.93 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+. ...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM-NLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 444578999999999887 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 235 ~~~~~~ 240 (258)
T PRK14268 235 GQTRQI 240 (258)
T ss_pred CCHHHH
Confidence 666543
No 122
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=8.8e-26 Score=154.32 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+++.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 133 SgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 789999999999999999999999999999999888888765544444 78999999999887 4699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 213 ~g~~~~~ 219 (354)
T TIGR02142 213 AGPIAEV 219 (354)
T ss_pred ECCHHHH
Confidence 766553
No 123
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.93 E-value=1.2e-25 Score=143.78 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+++.+. .||++++|++|+
T Consensus 139 S~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 139 SGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 789999999999999999999999999999999888887765543345889999999999875 599999999874
No 124
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.93 E-value=1.4e-25 Score=146.24 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+...+.+.+.+......+.|+|++||+++.+.. +|++++|++|++..
T Consensus 147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 7899999999999999999999999999999998888876543333457899999999988754 79999999998865
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 227 ~g~~~ 231 (248)
T PRK09580 227 SGDFT 231 (248)
T ss_pred eCCHH
Confidence 6654
No 125
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.6e-26 Score=156.55 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++.+ ..||++++|++|++..
T Consensus 166 SgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 166 SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 79999999999999999999999999999999988888776554433 478999999999886 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 246 ~g~~~~l 252 (400)
T PRK10070 246 VGTPDEI 252 (400)
T ss_pred cCCHHHH
Confidence 766553
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=149.20 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ +.|++++||+++.+ ..||++++|++|++..
T Consensus 139 S~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 799999999999999999999999999999999888887665444444 78999999999987 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 219 ~g~~~~~ 225 (277)
T PRK13652 219 YGTVEEI 225 (277)
T ss_pred ECCHHHH
Confidence 776654
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=146.04 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+...+.+.+.+.....+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 139 SGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 79999999999999999999999999999999988877665433334588999999999876 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 219 ~~~~~~ 224 (241)
T PRK10895 219 GTPTEI 224 (241)
T ss_pred CCHHHH
Confidence 666543
No 128
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=147.44 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII-NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 445578999999999986 4699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 231 g~~~~~ 236 (254)
T PRK14273 231 SSTDEL 236 (254)
T ss_pred CCHHHH
Confidence 766543
No 129
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=149.52 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||+|||+.+.+.+++.+.+...+ |.|++++||+++.+..||+++++++|++..
T Consensus 142 S~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999988887765544444 789999999998876799999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 222 g~~~~ 226 (279)
T PRK13635 222 GTPEE 226 (279)
T ss_pred CCHHH
Confidence 76554
No 130
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=146.43 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+. .||++++|++|++..
T Consensus 133 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 78999999999999999999999999999999988887765544333 3889999999999875 699999999998864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 213 ~~~~~~~ 219 (241)
T PRK14250 213 YAKTYDF 219 (241)
T ss_pred eCCHHHH
Confidence 665543
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.4e-25 Score=144.95 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||+++++++|++..
T Consensus 133 S~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 133 SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665544443 789999999999876 599999999998875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 213 ~~~~~~~ 219 (230)
T TIGR03410 213 SGAGDEL 219 (230)
T ss_pred ECCHHHc
Confidence 666543
No 132
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=147.16 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 151 SgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELI-HELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4445578999999999987 5699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14242 230 GPTEQ 234 (253)
T ss_pred CCHHH
Confidence 66554
No 133
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=149.49 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||+|||+.+...+.+.+.+... .|.|++++||+++.+..||++++|++|++..
T Consensus 146 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999998888766544434 4899999999999876699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 226 g~~~~~ 231 (280)
T PRK13633 226 GTPKEI 231 (280)
T ss_pred cCHHHH
Confidence 776653
No 134
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.1e-25 Score=146.47 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 137 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444343 78999999999876 5699999999999864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 217 ~~~~~~ 222 (242)
T cd03295 217 VGTPDE 222 (242)
T ss_pred ecCHHH
Confidence 65543
No 135
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=1.6e-25 Score=143.71 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 135 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 789999999999999999999999999999999888887654 44445689999999999875 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03263 214 GSPQEL 219 (220)
T ss_pred CCHHHc
Confidence 776654
No 136
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=1.5e-25 Score=145.47 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++||||++.+|++++|||||++||+.+++.+.+.+... .++.++|++||+++.+..||++++|++|++.. +
T Consensus 141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQG 219 (238)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeC
Confidence 789999999999999999999999999999999888887665443 47889999999998877899999999999875 5
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
+.++
T Consensus 220 ~~~~ 223 (238)
T cd03249 220 THDE 223 (238)
T ss_pred CHHH
Confidence 5543
No 137
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=2e-25 Score=142.75 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 79999999999999999999999999999999988888776554444 3789999999998865 599999999998764
No 138
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=148.46 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...++.|++++||+++.+. .||++++|++|++..
T Consensus 139 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887765544345899999999999875 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 219 g~~~~~ 224 (275)
T PRK13639 219 GTPKEV 224 (275)
T ss_pred CCHHHH
Confidence 776653
No 139
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=148.74 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+..||++++|++|++..
T Consensus 142 S~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887665444444 899999999999876799999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 222 g~~~~~ 227 (277)
T PRK13642 222 AAPSEL 227 (277)
T ss_pred CCHHHH
Confidence 776653
No 140
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=9.9e-26 Score=155.60 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|||||||++||||++-+|++++||||||+||......+.+.+..... .|.+.+++|||+..++ .|+++++|++|++++
T Consensus 428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee
Confidence 79999999999999999999999999999999998888876544333 4789999999999985 599999999999987
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|+.++++
T Consensus 508 ~G~~~~if 515 (534)
T COG4172 508 QGPTEAVF 515 (534)
T ss_pred eCCHHHHh
Confidence 8887763
No 141
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=147.59 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+..||++++|++|++..
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887665444333 789999999998876699999999999874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 224 g~~~~~ 229 (269)
T PRK13648 224 GTPTEI 229 (269)
T ss_pred cCHHHH
Confidence 766543
No 142
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=1.3e-25 Score=161.24 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.. |
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l-~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44556899999999999888899999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 552 ~~~~l 556 (585)
T TIGR01192 552 SFQEL 556 (585)
T ss_pred CHHHH
Confidence 76654
No 143
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=2.1e-25 Score=142.61 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus 138 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 789999999999999999999999999999999888887665443345889999999999875 5899999998863
No 144
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-25 Score=144.81 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+..... .+.|+|++||+++.+. .||++++|++|++.+
T Consensus 131 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544434 3789999999999875 589999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 211 ~g~~~~ 216 (232)
T PRK10771 211 DGPTDE 216 (232)
T ss_pred eCCHHH
Confidence 66554
No 145
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=2.6e-25 Score=142.60 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+ ..+|++++|++|++..
T Consensus 138 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 78999999999999999999999999999999988888766544434588999999999886 4699999999998754
No 146
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.6e-25 Score=146.48 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+.+.+. .||++++|++|++..
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888776544434 3789999999999875 699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 230 ~~~~~~ 235 (253)
T TIGR02323 230 SGLTDQ 235 (253)
T ss_pred ECCHHH
Confidence 66544
No 147
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.1e-25 Score=142.93 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ |.|+|++||+.+.+ ..||++++|++|++..
T Consensus 133 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887665444444 78999999999987 4699999999998753
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=146.15 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL-ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 7899999999999999999999999999999998888876654 444578999999999987 4699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 227 g~~~~~ 232 (250)
T PRK14247 227 GPTREV 232 (250)
T ss_pred CCHHHH
Confidence 666543
No 149
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-25 Score=144.23 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+..||++++|++|++.. +
T Consensus 140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERG 218 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeC
Confidence 789999999999999999999999999999999888887655 44446889999999998876799999999998865 6
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
++++
T Consensus 219 ~~~~ 222 (234)
T cd03251 219 THEE 222 (234)
T ss_pred CHHH
Confidence 6554
No 150
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=2.2e-25 Score=144.95 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+++.+ ..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 145 S~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 789999999999999999999999999999999888887654 44445789999999999875 699999999999874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 224 ~~~~~~ 229 (242)
T TIGR03411 224 GSLDQV 229 (242)
T ss_pred CCHHHH
Confidence 666543
No 151
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.9e-25 Score=147.28 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 799999999999999999999999999999999888887665443333 78999999999987 4699999999999864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 66554
No 152
>KOG0057|consensus
Probab=99.92 E-value=1.8e-25 Score=157.82 Aligned_cols=84 Identities=27% Similarity=0.434 Sum_probs=77.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||+++|||++++|+|+++|||||+||.++.+++++.+.. ...++|+|+|-|+++.+..||+|+++++|.+.+ |
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~g 567 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYG 567 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEec
Confidence 79999999999999999999999999999999999999987654 557899999999999999999999999999875 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+.++++
T Consensus 568 th~ell 573 (591)
T KOG0057|consen 568 THSELL 573 (591)
T ss_pred cHHHHh
Confidence 877653
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-25 Score=144.96 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+.+.+. .+|++++|++|++..
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654433335889999999999875 599999999998865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 223 ~~~~~ 227 (242)
T PRK11124 223 GDASC 227 (242)
T ss_pred CCHHH
Confidence 66544
No 154
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=2.9e-25 Score=145.06 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. . +|++++|++|++..
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 789999999999999999999999999999999888887665443345889999999998875 4 79999999999875
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 233 ~~~~~ 237 (252)
T CHL00131 233 TGDAE 237 (252)
T ss_pred ecChh
Confidence 6654
No 155
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2.4e-25 Score=139.95 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 789999999999999999999999999999999888887665443345789999999998875 5999999999864
No 156
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=1.4e-25 Score=163.30 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=74.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||+++|||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 799999999999999999999999999999999988887665 44456899999999999988899999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 674 ~~~~l 678 (694)
T TIGR01846 674 RHEEL 678 (694)
T ss_pred CHHHH
Confidence 87664
No 157
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=3e-25 Score=142.84 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+++.+. .||++++|++|++..
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 789999999999999999999999999999999888887655443345789999999999875 589999999998764
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-25 Score=157.57 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 79999999999999999999999999999999988888766544445689999999999987 4699999999999864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 666654
No 159
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-25 Score=161.92 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++|||||||++||+.+...+++.+.+...+ |.|+|++|||++.+. .||++++|++|++.+
T Consensus 465 SgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888765554444 789999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 545 ~g~~~~i 551 (623)
T PRK10261 545 IGPRRAV 551 (623)
T ss_pred ecCHHHH
Confidence 776654
No 160
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=1.8e-25 Score=147.63 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887665544343 789999999999875 599999999998865
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 231 ~~~~~~ 236 (267)
T PRK15112 231 RGSTAD 236 (267)
T ss_pred cCCHHH
Confidence 65544
No 161
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-25 Score=157.17 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 799999999999999999999999999999999988888765544446889999999999875 699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 227 g~~~~~ 232 (510)
T PRK09700 227 GMVSDV 232 (510)
T ss_pred cchhhC
Confidence 777664
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=2.6e-25 Score=145.89 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 78999999999999999999999999999999988888766544434578999999999987 5699999999998875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 219 g~~~~~ 224 (256)
T TIGR03873 219 GPPREV 224 (256)
T ss_pred cCHHHh
Confidence 766553
No 163
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.6e-25 Score=144.06 Aligned_cols=82 Identities=28% Similarity=0.371 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+... .++.|+|++||+.+.+..||++++|++|++.. |
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERG 217 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeC
Confidence 789999999999999999999999999999999888887665443 34889999999999886799999999998865 5
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
++++
T Consensus 218 ~~~~ 221 (236)
T cd03253 218 THEE 221 (236)
T ss_pred CHHH
Confidence 5544
No 164
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=1.7e-25 Score=158.95 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765444343 789999999999874 699999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|.++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 665543
No 165
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.92 E-value=3.3e-25 Score=143.03 Aligned_cols=77 Identities=25% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+.+.+..+|++++|++|++.
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 789999999999999999999999999999999888887665443343 78999999999887779999999999875
No 166
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=3.2e-25 Score=141.20 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh--hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN--HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~--~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+++.+.+...++.|+|++||+++.+. .+|++++|++|++..
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444345789999999999876 699999999998875
Q ss_pred -C
Q psy1506 79 -G 79 (85)
Q Consensus 79 -g 79 (85)
|
T Consensus 186 ~~ 187 (200)
T cd03217 186 SG 187 (200)
T ss_pred Ec
Confidence 5
No 167
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.6e-25 Score=143.53 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+. .+.++.|+|++||+++.+..||++++|++|++.. +
T Consensus 141 S~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~ 219 (229)
T cd03254 141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEG 219 (229)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeC
Confidence 7899999999999999999999999999999998888876654 4456889999999998877799999999999875 6
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
+.++
T Consensus 220 ~~~~ 223 (229)
T cd03254 220 THDE 223 (229)
T ss_pred CHHH
Confidence 5544
No 168
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=3.4e-25 Score=143.08 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||+++++ +|++..
T Consensus 115 S~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 78999999999999999999999999999999998888876544444688999999999986 469999999 788764
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 194 ~~~~~~ 199 (223)
T TIGR03771 194 GTPQQL 199 (223)
T ss_pred cCHHHh
Confidence 666553
No 169
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=2.5e-25 Score=145.91 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .|.|++++||+++.+ ..||++++|++|++..
T Consensus 142 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544334 378999999999987 4699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 222 ~~~~~~ 227 (254)
T PRK10418 222 QGDVET 227 (254)
T ss_pred ecCHHH
Confidence 66554
No 170
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=1.8e-25 Score=159.94 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.. |
T Consensus 453 SgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL-RQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRG 531 (569)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEec
Confidence 789999999999999999999999999999999988887664 44457899999999999888899999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 532 ~~~~l 536 (569)
T PRK10789 532 NHDQL 536 (569)
T ss_pred CHHHH
Confidence 76654
No 171
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.3e-25 Score=173.29 Aligned_cols=84 Identities=40% Similarity=0.684 Sum_probs=76.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||++++|+++|||||||+||+++.+.+++.++....+++|+|++||+++.+..+|+|++|++|++.+ |
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 799999999999999999999999999999999999898877665557899999999999999999999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+.+++
T Consensus 822 t~~eL 826 (1495)
T PLN03232 822 TFAEL 826 (1495)
T ss_pred CHHHH
Confidence 76654
No 172
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=146.26 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999998888776554434 378999999999876 5699999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 225 ~g~~~~~ 231 (265)
T PRK10253 225 QGAPKEI 231 (265)
T ss_pred eCCHHHH
Confidence 666543
No 173
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=145.27 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4444568999999999876 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 229 g~~~~~ 234 (252)
T PRK14239 229 NDTKQM 234 (252)
T ss_pred CCHHHH
Confidence 665543
No 174
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.6e-25 Score=147.96 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+..||++++|++|++..
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887765444343 889999999998877799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 225 g~~~~~ 230 (282)
T PRK13640 225 GSPVEI 230 (282)
T ss_pred CCHHHH
Confidence 776653
No 175
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.6e-25 Score=146.10 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999888877654 4444578999999999986 4699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 236 g~~~~~ 241 (259)
T PRK14274 236 NDTNKM 241 (259)
T ss_pred CCHHHH
Confidence 776654
No 176
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.7e-25 Score=143.42 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|.|+|++||+++.+..++++++|++|++..
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544333 4889999999999887778999999998864
No 177
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=146.33 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..+|++++|++|++..
T Consensus 158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 444578999999999887 4699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 237 g~~~~ 241 (260)
T PRK10744 237 GNTDT 241 (260)
T ss_pred CCHHH
Confidence 66554
No 178
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=2.8e-25 Score=148.98 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+++|++++|||||+|||+.+.+.+++.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 135 S~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4455578999999999987 4699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 214 g~~~~~ 219 (301)
T TIGR03522 214 KKLDEL 219 (301)
T ss_pred CCHHHH
Confidence 776653
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=145.13 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI-QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888777654 44455789999999999874 699999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 230 ~~~~~ 234 (251)
T PRK14244 230 NTTQE 234 (251)
T ss_pred CCHHH
Confidence 66554
No 180
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=145.54 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876654 444568999999999986 4699999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 230 ~~~~~ 234 (253)
T PRK14267 230 GPTRK 234 (253)
T ss_pred CCHHH
Confidence 66654
No 181
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=2.8e-25 Score=145.36 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ +.|+|++||+++.+ ..+|++++|++|++..
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887665444443 78999999999987 5699999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 228 ~g~~~~ 233 (252)
T TIGR03005 228 QGKPDE 233 (252)
T ss_pred eCCHHH
Confidence 66554
No 182
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=3.1e-25 Score=145.90 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+...+.+.+.+..... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544433 378999999999976 5699999999998864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 234 ~g~~~~ 239 (262)
T PRK09984 234 DGSSQQ 239 (262)
T ss_pred eCCHHH
Confidence 76654
No 183
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.7e-25 Score=141.45 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus 130 S~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 78999999999999999999999999999999988888776554433 3789999999999874 599999999998753
No 184
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=4.6e-25 Score=142.11 Aligned_cols=82 Identities=21% Similarity=0.117 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 78999999999999999999999999999999988888766544434578999999999987 5699999999999865
Q ss_pred Cccc
Q psy1506 79 GWVE 82 (85)
Q Consensus 79 g~~~ 82 (85)
|++.
T Consensus 206 ~~~~ 209 (223)
T TIGR03740 206 GKIN 209 (223)
T ss_pred cChh
Confidence 6543
No 185
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.5e-25 Score=156.12 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=76.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||++||++|||+|++|+++++|||||.|||+.+.++++..+.+ ..+|+|+++|||++..++.+|+|++|++|++.+ |
T Consensus 476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence 79999999999999999999999999999999999999977544 456899999999999999999999999999875 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
.+++++
T Consensus 555 ~~~~Ll 560 (573)
T COG4987 555 THAELL 560 (573)
T ss_pred CHHhhh
Confidence 887753
No 186
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.2e-25 Score=137.92 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+.+.+. .+|++++|++|++
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 789999999999999999999999999999999988888765544445789999999999875 6999999998863
No 187
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.2e-25 Score=140.76 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ....++.|+|++||+++.+. .+|++++|++|++..
T Consensus 132 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLL-SELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 799999999999999999999999999999999888887654 44444689999999999874 699999999998753
No 188
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-25 Score=144.78 Aligned_cols=82 Identities=23% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||+++||||+.+|++++|||||++||+.+...+.+.+. ...++.|+|++||+++.+ ..+|++++|++|++..
T Consensus 144 S~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK-ELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 7899999999999999999999999999999998888776544 444588999999999987 4699999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 223 g~~~~ 227 (246)
T PRK14269 223 GESKE 227 (246)
T ss_pred CCHHH
Confidence 66554
No 189
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=3e-25 Score=156.33 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 799999999999999999999999999999999988888765544445889999999998874 699999999998864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 217 ~~~~~ 221 (490)
T PRK10938 217 GEREE 221 (490)
T ss_pred CCHHH
Confidence 66554
No 190
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.4e-25 Score=156.11 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+.+.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 799999999999999999999999999999999888888765544446889999999999874 699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 776654
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.4e-25 Score=146.56 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...+ +.|+|++||+++.+..||++++|++|++..
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887765444444 489999999998876799999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 224 g~~~~ 228 (271)
T PRK13632 224 GKPKE 228 (271)
T ss_pred cCHHH
Confidence 66554
No 192
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=146.50 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4444568999999999886 4699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 245 ~~~~~ 249 (268)
T PRK14248 245 DQTEQ 249 (268)
T ss_pred CCHHH
Confidence 66544
No 193
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=1.7e-25 Score=172.40 Aligned_cols=85 Identities=28% Similarity=0.337 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcC----ce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNN----VS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~----g~ 75 (85)
|+|||||++|||||+++|+|||||||||+||+++.+.+.+.+.+.. .+++|+|+|+|+++.+..||+|++|++ |+
T Consensus 1360 SGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~ 1439 (1466)
T PTZ00265 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGS 1439 (1466)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCC
Confidence 7999999999999999999999999999999998887776554332 368999999999999999999999998 88
Q ss_pred ee--cCcccccC
Q psy1506 76 KT--SGWVEEIL 85 (85)
Q Consensus 76 i~--~g~~~~~~ 85 (85)
++ .|+.++++
T Consensus 1440 iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1440 FVQAHGTHEELL 1451 (1466)
T ss_pred EEEEecCHHHHH
Confidence 43 48887763
No 194
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=8.1e-25 Score=137.06 Aligned_cols=77 Identities=31% Similarity=0.421 Sum_probs=68.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+...+.+++.+. .+.++.|+|++||+.+.+..+|++++|++|++..
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 7899999999999999999999999999999998888876654 4456789999999999887799999999998764
No 195
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.6e-25 Score=140.90 Aligned_cols=78 Identities=24% Similarity=0.291 Sum_probs=68.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|++++||+.+.+ ..||++++|++|++..
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 78999999999999999999999999999999988888766544334578999999999887 4699999999998753
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=160.76 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++|||||||++||+..+..+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 799999999999999999999999999999999888887665444334 88999999999987 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 250 ~g~~~~~ 256 (623)
T PRK10261 250 TGSVEQI 256 (623)
T ss_pred cCCHHHh
Confidence 666543
No 197
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=6.9e-25 Score=137.68 Aligned_cols=78 Identities=24% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||+++|||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..+|++++|++|++..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887655433344 78999999999987 5699999999998753
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=4.6e-25 Score=156.27 Aligned_cols=84 Identities=13% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 142 SgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 79999999999999999999999999999999988888876554444688999999999987 4699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 222 g~~~~~ 227 (510)
T PRK15439 222 GKTADL 227 (510)
T ss_pred cChHHc
Confidence 776654
No 199
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=5.2e-25 Score=156.01 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++|||||||+|||+.+.+.+.+.+.+...+|.|+|++||+++++. .||++++|++|++..
T Consensus 405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 799999999999999999999999999999999988887765444446889999999999875 699999999998874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
++++++
T Consensus 485 ~~~~~~ 490 (510)
T PRK15439 485 LTGAAI 490 (510)
T ss_pred EccccC
Confidence 666553
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=3e-25 Score=157.63 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765544444 789999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 507 ~~~~~~~ 513 (529)
T PRK15134 507 QGDCERV 513 (529)
T ss_pred EcCHHHH
Confidence 766554
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=6e-25 Score=141.10 Aligned_cols=77 Identities=31% Similarity=0.440 Sum_probs=67.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+++.+. .+.++.|+|++||+++....||+++++++|++..
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR-QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 7899999999999999999999999999999998888876644 4444589999999998777799999999998753
No 202
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.6e-25 Score=144.12 Aligned_cols=82 Identities=24% Similarity=0.253 Sum_probs=70.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..+|++++|++|++..
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI-QELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888877654 4445578999999999876 4699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 227 ~~~~~ 231 (250)
T PRK14240 227 GDTVD 231 (250)
T ss_pred CCHHH
Confidence 65544
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4e-25 Score=144.47 Aligned_cols=82 Identities=30% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM-ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 444568999999999986 4699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14251 228 GPTEE 232 (251)
T ss_pred CCHHH
Confidence 66554
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=144.83 Aligned_cols=83 Identities=23% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~ 72 (85)
|+||+||++|||||+ .+|++++|||||++||+.+.+.+.+.+.+.. .++.|+|++||+++.+. .||++++|+
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 215 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 789999999999999 5999999999999999998888876654444 35789999999999875 699999999
Q ss_pred Cceeec-Ccccc
Q psy1506 73 NVSKTS-GWVEE 83 (85)
Q Consensus 73 ~g~i~~-g~~~~ 83 (85)
+|++.. |++++
T Consensus 216 ~G~i~~~~~~~~ 227 (258)
T PRK13548 216 QGRLVADGTPAE 227 (258)
T ss_pred CCEEEeeCCHHH
Confidence 998865 66554
No 205
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=7.7e-25 Score=141.57 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=68.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+++.+.....++.|+|++||+.+.+. .+|+++++++|++..
T Consensus 144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887765444445789999999998874 699999999998753
No 206
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=3e-25 Score=171.32 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+|++||||||+||+++.+.+.+. ++...+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 78999999999999999999999999999999987776544 555567899999999999999999999999999986 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 1452 t~~eLl 1457 (1495)
T PLN03232 1452 SPQELL 1457 (1495)
T ss_pred CHHHHH
Confidence 988763
No 207
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=144.00 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 149 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 78999999999999999999999999999999988877665 444456789999999999875 589999999998864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14249 228 GRTGE 232 (251)
T ss_pred CCHHH
Confidence 66554
No 208
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=6.3e-25 Score=155.18 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+++.+ ..||++++|++|++..
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 79999999999999999999999999999999998888766544444578999999999987 4699999999999864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 223 ~~~~~~ 228 (501)
T PRK10762 223 REVADL 228 (501)
T ss_pred cCcCcC
Confidence 666543
No 209
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.9e-25 Score=144.16 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 789999999999999999999999999999999888887654 44444689999999999864 599999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 228 ~~~~~~ 233 (251)
T PRK14270 228 NKTEKI 233 (251)
T ss_pred CCHHHH
Confidence 666543
No 210
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.1e-25 Score=145.48 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888877654 4444568999999999987 4689999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 244 g~~~~ 248 (267)
T PRK14235 244 GDTEK 248 (267)
T ss_pred CCHHH
Confidence 66554
No 211
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=143.80 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ +.+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 150 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM-TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888877654 44445789999999999875 599999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 229 ~~~~~ 233 (252)
T PRK14272 229 GPTDQ 233 (252)
T ss_pred CCHHH
Confidence 66654
No 212
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=6.3e-25 Score=140.31 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=66.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus 137 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 137 SGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 789999999999999999999999999999999888887665443345789999999999874 6999999998864
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.9e-25 Score=145.08 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC-----
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN----- 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~----- 73 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+++.+..... .+.|+|++||+++.+. .||++++|++
T Consensus 152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~ 231 (261)
T PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcC
Confidence 78999999999999999999999999999999988888766544323 4789999999999874 6999999998
Q ss_pred ceeec-Cccccc
Q psy1506 74 VSKTS-GWVEEI 84 (85)
Q Consensus 74 g~i~~-g~~~~~ 84 (85)
|++.. |+++++
T Consensus 232 G~i~~~~~~~~~ 243 (261)
T PRK14258 232 GQLVEFGLTKKI 243 (261)
T ss_pred ceEEEeCCHHHH
Confidence 98865 776654
No 214
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=8.2e-25 Score=144.63 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 789999999999999999999999999999999888887665443333 789999999999875 699999999998865
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 233 ~g~~~~~ 239 (268)
T PRK10419 233 TQPVGDK 239 (268)
T ss_pred eCChhhc
Confidence 776654
No 215
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=7.8e-25 Score=144.32 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 78999999999999999999999999999999988888766544433 478999999999986 5699999999998864
Q ss_pred -Cc
Q psy1506 79 -GW 80 (85)
Q Consensus 79 -g~ 80 (85)
++
T Consensus 215 ~~~ 217 (257)
T PRK11247 215 DLT 217 (257)
T ss_pred ecc
Confidence 44
No 216
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=3.1e-25 Score=172.03 Aligned_cols=84 Identities=43% Similarity=0.754 Sum_probs=76.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
||||||||+||||++++|+++|||||||+||+++.+.+++.++....+++|+|++||+++.+..+|+|++|++|++.+ |
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 799999999999999999999999999999999988888777665557899999999999999999999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 822 t~~eL 826 (1622)
T PLN03130 822 TYEEL 826 (1622)
T ss_pred CHHHH
Confidence 77654
No 217
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=3.7e-25 Score=171.60 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=75.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+|++||||||+||.++.+.+.+. ++...+++|+|+|+|+++.+..||+|++|++|++.+ |
T Consensus 1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 78999999999999999999999999999999987776554 555567899999999999999999999999999986 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 1455 t~~eLl 1460 (1622)
T PLN03130 1455 TPENLL 1460 (1622)
T ss_pred CHHHHH
Confidence 988763
No 218
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.92 E-value=3.3e-25 Score=158.18 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||+++|||++++|++++|||||++||+.+.+.+++.+ ....+++|+|++||+++.+..+|+++.+++|++.+ |
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l-~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 789999999999999999999999999999999888777654 44456899999999998888899999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 557 ~~~~l 561 (576)
T TIGR02204 557 THAEL 561 (576)
T ss_pred cHHHH
Confidence 76553
No 219
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.3e-25 Score=144.49 Aligned_cols=83 Identities=22% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI-EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4444568999999999987 5699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 229 ~~~~~~ 234 (252)
T PRK14256 229 GETKKI 234 (252)
T ss_pred CCHHHH
Confidence 766543
No 220
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7e-25 Score=154.95 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||+|||+...+.+++.+.+....|.|+|++|||++++ ..||++++|++|++..
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 79999999999999999999999999999999998888876544445688999999999987 5699999999998764
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 478 ~~~~~~ 483 (501)
T PRK11288 478 LAREQA 483 (501)
T ss_pred EccccC
Confidence 766653
No 221
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.2e-25 Score=137.40 Aligned_cols=75 Identities=27% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ +.|++++||+.+.+. .||++++|++|+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 789999999999999999999999999999999888887665544445 789999999999876 699999998874
No 222
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=5.1e-25 Score=156.14 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .|.|+|++||+++.+. .||++++|++|++..
T Consensus 170 SgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 79999999999999999999999999999999998888776544434 4789999999999874 699999999999864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 250 ~g~~~~ 255 (520)
T TIGR03269 250 EGTPDE 255 (520)
T ss_pred ecCHHH
Confidence 66554
No 223
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-24 Score=137.58 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcC-ceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNN-VSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~-g~i~ 77 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++. + ..||++++|++ |++.
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 7899999999999999999999999999999998888877654433458899999999973 4 56999999998 8876
Q ss_pred c
Q psy1506 78 S 78 (85)
Q Consensus 78 ~ 78 (85)
+
T Consensus 190 ~ 190 (192)
T cd03232 190 Y 190 (192)
T ss_pred e
Confidence 4
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=8.6e-25 Score=154.32 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++++. .||++++|++|++..
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 799999999999999999999999999999999988888765444446889999999999875 699999999998864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
+++++
T Consensus 223 ~~~~~ 227 (500)
T TIGR02633 223 KDMST 227 (500)
T ss_pred cCccc
Confidence 65543
No 225
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.8e-25 Score=154.07 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 136 SgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 136 SVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 789999999999999999999999999999999988887765444446889999999999874 699999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 216 ~~~~~ 220 (491)
T PRK10982 216 QPLAG 220 (491)
T ss_pred cChhh
Confidence 66554
No 226
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.2e-25 Score=142.91 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|++++||+++.+ ..+|++++|++|++..
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE-ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH-HHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888776544 444578999999999876 5699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 227 g~~~~ 231 (250)
T PRK14262 227 GPTRE 231 (250)
T ss_pred cCHHH
Confidence 76654
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.9e-25 Score=142.69 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL-MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999988877765 444445689999999999865 599999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 226 g~~~~ 230 (249)
T PRK14253 226 DDTQV 230 (249)
T ss_pred CCHHH
Confidence 66543
No 228
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=1.2e-24 Score=139.51 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ +.|+|++||+.+.+. .||++++|++|++..
T Consensus 130 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 789999999999999999999999999999999888887765544443 789999999999864 699999999998864
No 229
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.9e-25 Score=144.89 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 170 S~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 7899999999999999999999999999999998887776544 444578999999999886 5699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 249 g~~~~ 253 (272)
T PRK14236 249 GDTDT 253 (272)
T ss_pred CCHHH
Confidence 66554
No 230
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.5e-25 Score=146.07 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+. +..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL-IQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 78999999999999999999999999999999988888765 44454568999999999987 4699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 263 g~~~~ 267 (286)
T PRK14275 263 APTAQ 267 (286)
T ss_pred CCHHH
Confidence 66544
No 231
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=1.5e-24 Score=138.40 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++||||++.+|+++||||||++||+.....+.+.+. ...++.|+|++||+++.+..+|++++|++|++.. |
T Consensus 127 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g 205 (207)
T cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIR-EEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205 (207)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecC
Confidence 7899999999999999999999999999999998887776544 4445889999999999876699999999998864 5
Q ss_pred c
Q psy1506 80 W 80 (85)
Q Consensus 80 ~ 80 (85)
+
T Consensus 206 ~ 206 (207)
T cd03369 206 H 206 (207)
T ss_pred C
Confidence 4
No 232
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.7e-25 Score=143.18 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=70.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 150 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL-ELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876544 4444589999999999874 699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++.+
T Consensus 229 ~~~~~ 233 (252)
T PRK14255 229 ADTKQ 233 (252)
T ss_pred CCHHH
Confidence 65543
No 233
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8e-25 Score=144.87 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++..
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 44455789999999999864 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 248 g~~~~~ 253 (271)
T PRK14238 248 DDTDKI 253 (271)
T ss_pred CCHHHH
Confidence 766543
No 234
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.1e-25 Score=145.20 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
||||+||+.|||||+.+|+++++|||+|+||...+..+...+..... .|.+.+++|||+..+.+ +|++.+|..|++++
T Consensus 111 SGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred CchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 79999999999999999999999999999999998888876554443 48999999999999876 89999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+.+++
T Consensus 191 ~g~~~~~ 197 (268)
T COG4608 191 IGPTEEV 197 (268)
T ss_pred ecCHHHH
Confidence 877765
No 235
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=9.3e-25 Score=144.47 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+...+.+++.+......+.|+|++||+...+. .||++++|++|++..
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887765443345889999999999875 599999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 225 g~~~~ 229 (264)
T PRK13546 225 GELDD 229 (264)
T ss_pred CCHHH
Confidence 76654
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=5.8e-25 Score=155.86 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765444343 789999999999874 699999999999865
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 509 ~g~~~~~ 515 (520)
T TIGR03269 509 IGDPEEI 515 (520)
T ss_pred ECCHHHH
Confidence 776553
No 237
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=9.9e-25 Score=155.83 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=69.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|||||||++||||++.+|+++||||||++||+++.+.+.+.+.+.. .+++|+|++||+++.+..+|++++|++|++.+
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 7999999999999999999999999999999999888876655433 46899999999998888899999999998864
No 238
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9e-25 Score=144.89 Aligned_cols=83 Identities=25% Similarity=0.327 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN------- 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~------- 72 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|+
T Consensus 163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL-ELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 7899999999999999999999999999999998888876544 444568999999999987 4699999997
Q ss_pred --Cceeec-Cccccc
Q psy1506 73 --NVSKTS-GWVEEI 84 (85)
Q Consensus 73 --~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 242 ~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 242 KRRGKLVEFSPTEQM 256 (274)
T ss_pred ccCceEEEeCCHHHH
Confidence 688765 776654
No 239
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=143.99 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||+++++ +|++..
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 78999999999999999999999999999999988888766544334588999999999886 568999877 788764
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 223 g~~~~~ 228 (272)
T PRK15056 223 GPTETT 228 (272)
T ss_pred cCHHhc
Confidence 776653
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=1.7e-24 Score=137.36 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc-hh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-YL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++ .+ ..+|++++|++|++..
T Consensus 113 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 789999999999999999999999999999999888887665443345899999999996 45 4699999999998753
No 241
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=154.09 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 79999999999999999999999999999999998888876554444688999999999987 4699999999998864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
++++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 665553
No 242
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.92 E-value=1.1e-24 Score=142.67 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhc-------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~-------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~ 72 (85)
|+||+||++|||||+. +|+++||||||++||+.+.+.+.+.+.....++.|+|++||+++.+ ..||++++|+
T Consensus 128 S~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 207 (248)
T PRK03695 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK 207 (248)
T ss_pred CHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 7899999999999997 6799999999999999988888765544434588999999999876 5699999999
Q ss_pred Cceeec-Ccccc
Q psy1506 73 NVSKTS-GWVEE 83 (85)
Q Consensus 73 ~g~i~~-g~~~~ 83 (85)
+|++.. |++++
T Consensus 208 ~G~i~~~g~~~~ 219 (248)
T PRK03695 208 QGKLLASGRRDE 219 (248)
T ss_pred CCEEEEECCHHH
Confidence 999865 66554
No 243
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=1.2e-24 Score=145.15 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.....+++.++..+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus 161 SgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g 240 (282)
T cd03291 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240 (282)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999877777655444455789999999998887799999999999864 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 241 ~~~~~ 245 (282)
T cd03291 241 TFSEL 245 (282)
T ss_pred CHHHH
Confidence 66543
No 244
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=6.4e-25 Score=169.72 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+|++||||||+||+++.+.+.+. ++...+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 78999999999999999999999999999999987766544 555567899999999999999999999999999986 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 1502 ~~~eLl 1507 (1522)
T TIGR00957 1502 APSNLL 1507 (1522)
T ss_pred CHHHHH
Confidence 988763
No 245
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=143.58 Aligned_cols=83 Identities=24% Similarity=0.240 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN------- 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~------- 72 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM-HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 789999999999999999999999999999999888877654 4444568999999999886 5699999998
Q ss_pred --Cceeec-Cccccc
Q psy1506 73 --NVSKTS-GWVEEI 84 (85)
Q Consensus 73 --~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 232 ~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 232 GRYGYLVEFDRTEKI 246 (264)
T ss_pred ccCceEEEeCCHHHH
Confidence 688865 666554
No 246
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=153.37 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999988888876544445688999999999886 5699999999998864
No 247
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=144.02 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=64.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~ 73 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++
T Consensus 156 S~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 789999999999999999999999999999999888887654 4445578999999999887 56999999996
No 248
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.2e-24 Score=140.98 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||+|||+.+.+.+.+.+.....+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 789999999999999999999999999999999888887665443333 88999999999986 4699999999998864
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+.+
T Consensus 212 ~~~~~ 216 (232)
T cd03300 212 IGTPE 216 (232)
T ss_pred cCCHH
Confidence 5544
No 249
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=142.78 Aligned_cols=82 Identities=24% Similarity=0.255 Sum_probs=70.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc------C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN------N 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~------~ 73 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|+ +
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~ 228 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKP 228 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCC
Confidence 789999999999999999999999999999999888887654 4444568999999999986 5699999996 7
Q ss_pred ceeec-Ccccc
Q psy1506 74 VSKTS-GWVEE 83 (85)
Q Consensus 74 g~i~~-g~~~~ 83 (85)
|++.. |++++
T Consensus 229 g~i~~~~~~~~ 239 (258)
T PRK14241 229 GRLVEIDDTEK 239 (258)
T ss_pred ceEEecCCHHH
Confidence 88865 66654
No 250
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=2.4e-24 Score=139.61 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+||++|||||+.+| +++||||||++||+.+...+++.+.+...+|.|+|++||+++.+..||++++| +
T Consensus 139 SgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~ 218 (226)
T cd03270 139 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVH 218 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCcccc
Confidence 789999999999999998 59999999999999998888876554444688999999999887789999999 7
Q ss_pred Cceeec
Q psy1506 73 NVSKTS 78 (85)
Q Consensus 73 ~g~i~~ 78 (85)
+|++++
T Consensus 219 ~G~iv~ 224 (226)
T cd03270 219 GGEIVA 224 (226)
T ss_pred CCEEEe
Confidence 777764
No 251
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=2.4e-24 Score=140.09 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=68.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++..
T Consensus 155 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 789999999999999999999999999999999988887765443343 789999999999874 599999999998753
No 252
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=1.7e-24 Score=142.30 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++||||++.+|++++|||||++||+.+...+++.+ ..+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g 236 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV-MTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECD 236 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeC
Confidence 689999999999999999999999999999999877776554 44456889999999999877799999999999875 6
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
++++
T Consensus 237 ~~~~ 240 (257)
T cd03288 237 TPEN 240 (257)
T ss_pred CHHH
Confidence 6654
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.4e-24 Score=134.25 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=65.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
|+||+||++||||++.+|++++|||||++||+.....+.+.+ ..+.++.|++++||+++.+..||++++|++|+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 789999999999999999999999999999999888887654 44455789999999999876699999999874
No 254
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=143.06 Aligned_cols=83 Identities=27% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.++|++||+++.+ ..||++++|++|++..
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4445578999999999886 5699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 244 g~~~~~ 249 (267)
T PRK14237 244 DKTRNI 249 (267)
T ss_pred CCHHHH
Confidence 766543
No 255
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=152.26 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||+|||+.+.+.+++.+.....+|.|+|++||+++++ ..||++++|++|++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 79999999999999999999999999999999999988876544445689999999999987 4699999999998863
Q ss_pred Ccc
Q psy1506 79 GWV 81 (85)
Q Consensus 79 g~~ 81 (85)
+++
T Consensus 473 ~~~ 475 (491)
T PRK10982 473 VDT 475 (491)
T ss_pred Ecc
Confidence 443
No 256
>KOG0054|consensus
Probab=99.91 E-value=7.2e-25 Score=166.90 Aligned_cols=84 Identities=57% Similarity=0.878 Sum_probs=79.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
||||||||++|||+++++++++||.|+|++|.+..+.+++.++....+++|+|+|||..++++.+|.|++|++|++.. |
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~G 724 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESG 724 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEeccc
Confidence 799999999999999999999999999999999999999999977778999999999999999999999999999986 9
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++|+
T Consensus 725 ty~el 729 (1381)
T KOG0054|consen 725 TYEEL 729 (1381)
T ss_pred CHHHH
Confidence 88875
No 257
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.91 E-value=2e-24 Score=153.91 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=69.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+|||||+++|||++++|++++|||||++||+++.+.+.+.+.+... +++|+|++||+++.+..+|++++|++|++.+
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999988888766544433 4789999999998888899999999999874
No 258
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=141.59 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .+|++++|++|++..
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLI-EDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 789999999999999999999999999999999888887654 44444689999999999874 699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14261 230 DKTTQ 234 (253)
T ss_pred CCHHH
Confidence 66554
No 259
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=143.58 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+ ..+.++.|+|++||+++.+ ..+|++++|++|++..
T Consensus 165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999888887654 4444458999999999986 4699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 244 g~~~~~ 249 (276)
T PRK14271 244 GPTEQL 249 (276)
T ss_pred CCHHHH
Confidence 666543
No 260
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=1.8e-24 Score=140.66 Aligned_cols=83 Identities=25% Similarity=0.265 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+ ..||++++|++|++.+
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887765443444 78999999999986 4599999999999875
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|+.++
T Consensus 212 ~~~~~~ 217 (237)
T TIGR00968 212 IGSPDE 217 (237)
T ss_pred ecCHHH
Confidence 66554
No 261
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=3.5e-24 Score=138.33 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc-chh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL-QYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~-~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||+++||||+.+|++++|||||++||+.+...+.+.+.+...++.|+|++||+. +.+ ..||++++|++|++..
T Consensus 145 S~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 78999999999999999999999999999999988888766544334578999999998 454 6799999999998764
No 262
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=2.2e-24 Score=152.27 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++++ ..||++++|++|++..
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999988888766544445688999999999987 4699999999998764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=2.1e-24 Score=141.80 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceee-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKT- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~- 77 (85)
|+||+||++||||++.+|+++||||||++||+.+...+++.+.+...+ +.|+|++||+++.+ ..||++++|++ ++.
T Consensus 122 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 789999999999999999999999999999999888887665444344 78999999999987 56999999976 454
Q ss_pred cCccccc
Q psy1506 78 SGWVEEI 84 (85)
Q Consensus 78 ~g~~~~~ 84 (85)
.|+++++
T Consensus 201 ~g~~~~~ 207 (251)
T PRK09544 201 SGTPEVV 207 (251)
T ss_pred eCCHHHH
Confidence 4666543
No 264
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.4e-24 Score=142.04 Aligned_cols=83 Identities=27% Similarity=0.301 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN------- 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~------- 72 (85)
|+||+||++|||||+.+|++++|||||+|||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV-ELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 7899999999999999999999999999999998888876654 445578999999999986 5699999995
Q ss_pred -Cceeec-Cccccc
Q psy1506 73 -NVSKTS-GWVEEI 84 (85)
Q Consensus 73 -~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 230 ~~G~i~~~g~~~~~ 243 (261)
T PRK14263 230 RTGYLVEMGPTAQI 243 (261)
T ss_pred CCceEEEeCCHHHH
Confidence 788765 776553
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.7e-24 Score=137.50 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+.+.+..||++++|++|++..
T Consensus 141 S~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (221)
T cd03244 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217 (221)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence 789999999999999999999999999999999888877654 44445689999999998887799999999998864
No 266
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.1e-24 Score=141.09 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEc--Ccee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLN--NVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~--~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... +|.|+|++||+++.+ ..||++++|+ +|++
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 78999999999999999999999999999999988888766544333 488999999999987 4699999998 4877
Q ss_pred ec
Q psy1506 77 TS 78 (85)
Q Consensus 77 ~~ 78 (85)
..
T Consensus 210 ~~ 211 (255)
T PRK11248 210 VE 211 (255)
T ss_pred EE
Confidence 54
No 267
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.3e-24 Score=139.98 Aligned_cols=82 Identities=26% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ +.|++++||++..+. .||++++|++|++..
T Consensus 131 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888887655443333 889999999999865 699999999998864
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 211 ~~~~~ 215 (235)
T cd03299 211 VGKPE 215 (235)
T ss_pred ecCHH
Confidence 6544
No 268
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=3.2e-24 Score=134.13 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~- 78 (85)
|+||.||++|||||+.+|+++++||||++|||+....+...+.+....|.|-++|||..+..+. +.+++.|++|++++
T Consensus 143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 7999999999999999999999999999999998888876544444468999999999998864 89999999999986
Q ss_pred Cccc
Q psy1506 79 GWVE 82 (85)
Q Consensus 79 g~~~ 82 (85)
|+.+
T Consensus 223 g~a~ 226 (242)
T COG4161 223 GDAS 226 (242)
T ss_pred cchh
Confidence 7654
No 269
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=143.18 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEE
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIV 69 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~ 69 (85)
|+||+||++|||||+ .+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||+++
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 789999999999999 599999999999999999988888765544444 789999999999874 699999
Q ss_pred EEcCceeec-Cccccc
Q psy1506 70 FLNNVSKTS-GWVEEI 84 (85)
Q Consensus 70 ~l~~g~i~~-g~~~~~ 84 (85)
+|++|++.. |+++++
T Consensus 227 ~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 227 MLADGAIVAHGAPADV 242 (272)
T ss_pred EEECCeEEEecCHHHH
Confidence 999999874 666543
No 270
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=152.88 Aligned_cols=85 Identities=24% Similarity=0.290 Sum_probs=78.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceee-cC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKT-SG 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~-~g 79 (85)
|+|||||+++||||+.+|.+++||||-++||.+....+...+.....+|.|+|+|+|+++.+..+|++++|++|.+. +|
T Consensus 474 SgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG 553 (580)
T COG4618 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFG 553 (580)
T ss_pred CchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcC
Confidence 79999999999999999999999999999999988888877766667899999999999999999999999999986 58
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+.+|++
T Consensus 554 ~r~eVL 559 (580)
T COG4618 554 PREEVL 559 (580)
T ss_pred CHHHHH
Confidence 888763
No 271
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=140.23 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+. .++++++|++|++..
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLI-HKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 789999999999999999999999999999999888877654 44455789999999998864 589999999998865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 227 g~~~~ 231 (250)
T PRK14266 227 GLTDQ 231 (250)
T ss_pred CCHHH
Confidence 76654
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=2.5e-24 Score=139.06 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEc--Cceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLN--NVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~--~g~i~ 77 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+..... .+.|+|++||+.+.+..||++++|+ .|++.
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ 218 (225)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHh
Confidence 78999999999999999999999999999999988877765544333 3789999999999887799999996 35655
Q ss_pred cCccc
Q psy1506 78 SGWVE 82 (85)
Q Consensus 78 ~g~~~ 82 (85)
+|..+
T Consensus 219 ~~~~~ 223 (225)
T PRK10247 219 EARYE 223 (225)
T ss_pred hhhhc
Confidence 56544
No 273
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=141.29 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-----Cc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN-----NV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~-----~g 74 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|+ +|
T Consensus 152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G 230 (259)
T PRK14260 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH-SLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIG 230 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCc
Confidence 7899999999999999999999999999999998888776544 444568999999999987 4699999997 48
Q ss_pred eeec-Cccccc
Q psy1506 75 SKTS-GWVEEI 84 (85)
Q Consensus 75 ~i~~-g~~~~~ 84 (85)
++.. |+++++
T Consensus 231 ~i~~~~~~~~~ 241 (259)
T PRK14260 231 QMVEFGVTTQI 241 (259)
T ss_pred eEEEeCCHHHH
Confidence 8765 776653
No 274
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=5e-24 Score=134.08 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCchhHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~--p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|+||+||+++|||++.+ |++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+..+|++++|++|..
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 68999999999999999 99999999999999998888876654444468999999999988877999999988654
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=4.9e-24 Score=137.45 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=66.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+.+. .+.++.|+|++||+++.+..||++++|++|++
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY-DWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 7899999999999999999999999999999998888876544 44456899999999998867999999998863
No 276
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=3.4e-24 Score=152.34 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+++.+.....+|.|+|++||+++.+. .||++++|++|++..
T Consensus 145 SGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999888887665443345889999999999874 599999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 225 G~~~el 230 (549)
T PRK13545 225 GDIKEV 230 (549)
T ss_pred CCHHHH
Confidence 776553
No 277
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=2.6e-24 Score=166.60 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~-p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+|||||++|||||+++ |+|+|||||||+||+++.+.+.+. +....+++|+|+|+|+++.+..||+|++|++|++.+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999995 899999999999999987777554 555567899999999999999999999999999986
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 1526 Gt~~eL 1531 (1560)
T PTZ00243 1526 GSPREL 1531 (1560)
T ss_pred CCHHHH
Confidence 988876
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.8e-24 Score=150.69 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=69.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 79999999999999999999999999999999998888876554444688999999999987 4699999999998763
No 279
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.1e-24 Score=140.23 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999888777654 4444568999999999987 5699999999999864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 234 g~~~~~ 239 (257)
T PRK14246 234 GSSNEI 239 (257)
T ss_pred CCHHHH
Confidence 766543
No 280
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.4e-24 Score=141.95 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE-EEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV-FLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~-~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .+|+++ +|++|++..
T Consensus 182 SgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L-~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLI-EELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 789999999999999999999999999999999888887654 44444579999999999875 589975 579998864
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 261 ~g~~~~ 266 (285)
T PRK14254 261 FDDTDK 266 (285)
T ss_pred eCCHHH
Confidence 66544
No 281
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=3.5e-24 Score=165.42 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+|++||||||+||+++.+.+.+. +....+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 78999999999999999999999999999999987777655 455567899999999999998999999999999986 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+|++++
T Consensus 1434 ~p~~Ll 1439 (1490)
T TIGR01271 1434 SIQKLL 1439 (1490)
T ss_pred CHHHHH
Confidence 887753
No 282
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=1e-23 Score=131.09 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=62.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+. .. +.|+|++||+.+....||++++|+++
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 7899999999999999999999999999999998888776543 33 58999999998876779999999875
No 283
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.9e-24 Score=139.80 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|++++|||||++||+...+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++..
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~-~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS-DLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 7899999999999999999999999999999998888876554 444568999999999987 4699999999999864
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|+.++
T Consensus 242 g~~~~ 246 (265)
T PRK14252 242 GATDT 246 (265)
T ss_pred CCHHH
Confidence 66544
No 284
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.90 E-value=9.6e-24 Score=135.80 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=66.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|+||+||++||||++.+|++++|||||++||+...+.++..+..... .+.|+|++||+++....||++++|++|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 143 SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 78999999999999999999999999999999988888766544433 47999999999987677999999999875
No 285
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=8.9e-24 Score=138.56 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=65.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+. .||++++|+++.
T Consensus 117 SgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 78999999999999999999999999999999988888766544433 3789999999999875 599999997653
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.2e-23 Score=133.35 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
|+|++||++||||++++|+++|.||||.+|||..+.+++..+.+....|.||++.|||.+.+.. ..+++.+++|++..
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 7999999999999999999999999999999999999997765555579999999999998865 68999999999864
No 287
>PLN03211 ABC transporter G-25; Provisional
Probab=99.90 E-value=9.3e-24 Score=153.52 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||+|+.+|++++|||||+|||+.++..+.+.+.+...+|+|+|+++|+++. + ..+|++++|++|++.+
T Consensus 208 SgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~ 287 (659)
T PLN03211 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287 (659)
T ss_pred ChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence 7999999999999999999999999999999999998887655444468999999999974 4 6699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 288 ~G~~~~~ 294 (659)
T PLN03211 288 FGKGSDA 294 (659)
T ss_pred ECCHHHH
Confidence 877654
No 288
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=1.3e-23 Score=133.78 Aligned_cols=75 Identities=63% Similarity=0.940 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
|+||+||++||||++.+|++++|||||++||+...+.+++.++... .++.|+|++||+++.+..+|++++|++|+
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 7899999999999999999999999999999998888876555443 45789999999998876699999999874
No 289
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=1.4e-23 Score=134.78 Aligned_cols=75 Identities=37% Similarity=0.627 Sum_probs=65.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH-HHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED-CISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~-~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+++. ++.... .+.|+|++||+.+.+..||++++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 78999999999999999999999999999999988877762 444443 4789999999998877799999998873
No 290
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.9e-23 Score=131.53 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-HVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~~d~v~~l~~g~i 76 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++ .|++++||+++.+. .||++++|+++..
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 7899999999999999999999999999999998888876654444454 89999999999876 5999999997643
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=7.8e-24 Score=146.28 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
||||||||.||+||+++|+++|.||||++||.....++++.+..... -|.+++++|||+..+.. +|+|.+|.+|++++
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 79999999999999999999999999999999988888876544433 38899999999999864 89999999999986
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|..+++
T Consensus 239 ~~~t~~l 245 (534)
T COG4172 239 TGTTETL 245 (534)
T ss_pred cCcHHHH
Confidence 776654
No 292
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=141.14 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeE-EEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQI-VFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v-~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||+|||+.....+.+.+ ..+.++.|+|++||+++.+. .||++ ++|++|++..
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~ 280 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE
Confidence 789999999999999999999999999999999888877654 44444589999999999874 69996 5779999874
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 281 ~g~~~~ 286 (305)
T PRK14264 281 YDDTDK 286 (305)
T ss_pred eCCHHH
Confidence 66554
No 293
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.90 E-value=1.5e-23 Score=133.44 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=61.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++....||++++|
T Consensus 136 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 136 SGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 78999999999999999999999999999999988888766544334588999999999877779998764
No 294
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=2.4e-23 Score=127.04 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=63.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++||||++.+|++++||||+++||+.+...+.+.+ +.+ +.|++++||+.+.+. .||++++|++|+
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 789999999999999999999999999999999888776654 333 469999999999874 589999999874
No 295
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=1.3e-23 Score=162.29 Aligned_cols=84 Identities=37% Similarity=0.608 Sum_probs=74.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++.+|+++|||||+++||+.+.+.+++.++....+++|+|++||+++.+..||++++|++|++.. |
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYG 629 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEc
Confidence 789999999999999999999999999999999999998766555556899999999999888899999999998864 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 630 ~~~~l 634 (1490)
T TIGR01271 630 TFSEL 634 (1490)
T ss_pred CHHHH
Confidence 66543
No 296
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=1.2e-23 Score=162.30 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+|||||++|||||+++|++|||||||++||+.+.+.+.+.+.+... +|+|+|++||+++.+..||++++|++|
T Consensus 581 SGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 581 SGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 78999999999999999999999999999999988887765443333 489999999999988889999999986
No 297
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=1.2e-23 Score=162.80 Aligned_cols=84 Identities=51% Similarity=0.763 Sum_probs=74.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG--FLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~--~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+++.+... ..+++|+|++||+++.+..+|++++|++|++..
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 799999999999999999999999999999999999998877642 346789999999999988899999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 842 ~g~~~~l 848 (1522)
T TIGR00957 842 MGSYQEL 848 (1522)
T ss_pred eCCHHHH
Confidence 776554
No 298
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.89 E-value=3.1e-23 Score=149.80 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||+|+.+|++++|||||+|||+.++..+++.+.+...+|+|+|+++|++. . ...+|++++|++|++.+
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 799999999999999999999999999999999999998876555456899999999986 4 46799999999999876
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 248 ~G~~~~~ 254 (617)
T TIGR00955 248 LGSPDQA 254 (617)
T ss_pred ECCHHHH
Confidence 887654
No 299
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=5.6e-23 Score=136.01 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCchhHHHHHHHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~---p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||+.|||+|+.+ |++++|||||++||+...+.+.+.+.+...+|.|+|+++|+++++..+|+++.|
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~ 250 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGD 250 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCC
Confidence 78999999999999996 799999999999999998888776544444688999999999988889999999
Q ss_pred cCceeec-Ccc
Q psy1506 72 NNVSKTS-GWV 81 (85)
Q Consensus 72 ~~g~i~~-g~~ 81 (85)
++|++.+ |++
T Consensus 251 ~~G~iv~~Gt~ 261 (261)
T cd03271 251 GGGQVVASGTP 261 (261)
T ss_pred CCCEEEEeCCC
Confidence 7888865 653
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=147.62 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+.+ . ..+.|||++||+++.+. .||++++|++|++. +
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVL-N--ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 799999999999999999999999999999999888776554 3 24789999999999874 69999999999883 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 234 ~g~~~~ 239 (530)
T PRK15064 234 PGNYDE 239 (530)
T ss_pred cCCHHH
Confidence 76654
No 301
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.8e-23 Score=130.48 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=64.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEe-cCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVT-HQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vt-H~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|++++|||||++||+.+++.+++.+.+...+ +.++++++ |+.+.+ ..||++++|++|++.
T Consensus 120 S~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 789999999999999999999999999999999888887765544344 56666655 455665 569999999999876
Q ss_pred c
Q psy1506 78 S 78 (85)
Q Consensus 78 ~ 78 (85)
.
T Consensus 200 ~ 200 (202)
T cd03233 200 Y 200 (202)
T ss_pred e
Confidence 4
No 302
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.89 E-value=3.8e-23 Score=132.93 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++||||++.+|++++||||++++|+.+.+.+.+.+.+.. ++.++|++||++..+. .||++++|++|++.+
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEe
Confidence 7899999999999999999999999999999998887776544433 3468999999999874 699999999999875
Q ss_pred Cccc
Q psy1506 79 GWVE 82 (85)
Q Consensus 79 g~~~ 82 (85)
++.+
T Consensus 185 ~~~~ 188 (213)
T PRK15177 185 EDLA 188 (213)
T ss_pred CCHH
Confidence 5543
No 303
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=2.7e-23 Score=161.04 Aligned_cols=84 Identities=40% Similarity=0.625 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++.+|+++||||||++||+.+.+.+++.++....+|+|+|++||+++.+..+|++++|++|++.. |
T Consensus 784 SGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 784 SGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSG 863 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEec
Confidence 789999999999999999999999999999999888888765543446899999999999988899999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 864 ~~~~l 868 (1560)
T PTZ00243 864 SSADF 868 (1560)
T ss_pred CHHHH
Confidence 76654
No 304
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.89 E-value=3.5e-23 Score=146.80 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=63.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+|||||+++|||++++|++++|||||++||+++.+.+++.+ ....+++|+|++||+++.+..+|++++|
T Consensus 460 SgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 799999999999999999999999999999999999887665 4455789999999999988889999875
No 305
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=4.5e-23 Score=162.02 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+|||||+++|+||+.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++++. .|||+++|++|++..
T Consensus 2072 SGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 799999999999999999999999999999999988888765544456899999999999875 699999999999865
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 2152 Gs~q~L 2157 (2272)
T TIGR01257 2152 GTIQHL 2157 (2272)
T ss_pred CCHHHH
Confidence 877653
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=4.6e-23 Score=145.26 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-h-CCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-H-VDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~ 77 (85)
|+||+||++|||||+.+|+++||||||+|||+.+.+.+.+.+.+...++ .|+|++||+++.+. . +|++++|++|++.
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 7899999999999999999999999999999999888887654444454 47999999999874 3 7999999999875
Q ss_pred c
Q psy1506 78 S 78 (85)
Q Consensus 78 ~ 78 (85)
.
T Consensus 483 ~ 483 (490)
T PRK10938 483 R 483 (490)
T ss_pred E
Confidence 4
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.4e-23 Score=146.17 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=69.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+ +.|+|++||+.+++. .||++++|++|++. .
T Consensus 440 SgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~ 516 (530)
T PRK15064 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMAL-EKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDF 516 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEc
Confidence 799999999999999999999999999999999888887654 333 359999999999875 59999999999875 3
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 517 ~g~~~~~ 523 (530)
T PRK15064 517 SGTYEEY 523 (530)
T ss_pred CCCHHHH
Confidence 766553
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.4e-22 Score=124.53 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=65.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~ 75 (85)
|+||+||+++||+++.+|++++|||||++||+.+...+.+.+.....++.|++++||+.+.+.. ||+++++++|+
T Consensus 82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 7899999999999999999999999999999998888776554433446899999999999765 79999998864
No 309
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.4e-22 Score=130.14 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=63.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~ 73 (85)
|+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+.+.+ ..|+++++++.
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 78999999999999999999999999999999988877765444445678999999999987 56899998863
No 310
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=129.94 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=74.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-hhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~- 78 (85)
|+|+|.|+.|||||+.+|++++|||||+|+||-....+.+.+.....+|..|+++-|+..+ +..|||.+++..|++..
T Consensus 141 SGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred ccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 7999999999999999999999999999999998888865544444578999999999866 68899999999999875
Q ss_pred CcccccC
Q psy1506 79 GWVEEIL 85 (85)
Q Consensus 79 g~~~~~~ 85 (85)
|+|++++
T Consensus 221 G~p~ei~ 227 (243)
T COG1137 221 GSPEEIV 227 (243)
T ss_pred CCHHHHh
Confidence 9998763
No 311
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=132.15 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceee-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKT- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~- 77 (85)
+.||+.|+.|||||+.+|++++||||.+|+.+....++.+.+.+... .|.|+++|.||++.+ ..|||+++|+.|++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 57999999999999999999999999999999999988876544444 368999999999985 679999999999865
Q ss_pred cCccccc
Q psy1506 78 SGWVEEI 84 (85)
Q Consensus 78 ~g~~~~~ 84 (85)
+|+|+++
T Consensus 231 eG~P~eV 237 (250)
T COG0411 231 EGTPEEV 237 (250)
T ss_pred cCCHHHH
Confidence 5999886
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=146.56 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+++|++++|||||++||+.+.+.+.+.+.+...++.|++++||+.+....||++++|++|++.. |
T Consensus 146 S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNP 225 (648)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence 789999999999999999999999999999999888887664433345899999999999877799999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
++++.
T Consensus 226 ~~~~~ 230 (648)
T PRK10535 226 PAQEK 230 (648)
T ss_pred Ccccc
Confidence 76653
No 313
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.7e-22 Score=128.86 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=61.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC-CeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~-d~v~~l 71 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+..++..| +|++.+
T Consensus 131 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 78999999999999999999999999999999988888765544334578999999999998654 677666
No 314
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.88 E-value=1.3e-22 Score=130.61 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=62.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 71 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+.+.+. .||+++.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 789999999999999999999999999999999888887665444345889999999988874 69998876
No 315
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.6e-23 Score=141.07 Aligned_cols=84 Identities=25% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|.|||+++||+++++|+|++|||.||+||.++.+.+.. .+.....|+|.+++.|+++.+..+|+|++|++|++.+ |
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 7999999999999999999999999999999998887754 4566678999999999999999999999999999987 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
..++++
T Consensus 480 ~h~~ll 485 (497)
T COG5265 480 THEELL 485 (497)
T ss_pred cHHHHH
Confidence 877653
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.5e-22 Score=159.13 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+|||||+++||||+.+|++++|||||+|||+..++.+++.+.+ ..+|+|+|++||+++.+. .||++++|++|++..
T Consensus 1063 SGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~-l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 79999999999999999999999999999999998888876544 456899999999999875 699999999999865
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 1142 Gs~~~ 1146 (2272)
T TIGR01257 1142 GTPLF 1146 (2272)
T ss_pred cCHHH
Confidence 76654
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=2.2e-22 Score=144.99 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=64.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~ 73 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+.+.+.+... .+.|+|++|||++++. .||++++|++
T Consensus 455 SGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 79999999999999999999999999999999988888766544434 3789999999999875 6999999976
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.9e-22 Score=144.21 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+...+.+.+. +... +.|+|++||+++++. .||++++|++|++. +
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~ 241 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 241 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEe
Confidence 79999999999999999999999999999999988877654 4443 259999999999875 58999999999874 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 242 ~g~~~~ 247 (556)
T PRK11819 242 EGNYSS 247 (556)
T ss_pred cCCHHH
Confidence 65543
No 319
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=146.34 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=69.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||+++.+|+++||||||++||+.+...+.+.+ ..+ . .|+|+||||..++. .||++++|++|++. +
T Consensus 432 SgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~ 508 (638)
T PRK10636 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL-IDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508 (638)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEc
Confidence 799999999999999999999999999999999888776654 444 3 49999999999875 59999999999885 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 509 ~g~~~~ 514 (638)
T PRK10636 509 DGDLED 514 (638)
T ss_pred CCCHHH
Confidence 66654
No 320
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=3e-22 Score=128.02 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+.. ++++.++.
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 7899999999999999999999999999999998888876654444568899999999998876 88887754
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=2.2e-22 Score=145.75 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+ +.|+|+|||+..++. .||++++|++|++. +
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~-L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF-LKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 79999999999999999999999999999999987777654 4433 359999999999985 58999999999885 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 235 ~g~~~~ 240 (635)
T PRK11147 235 PGNYDQ 240 (635)
T ss_pred cCCHHH
Confidence 66543
No 322
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=3.2e-22 Score=125.74 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~ 77 (85)
|+|..|||+||||++..|++++.||||.+||..+.+++...++.... .|.|.|+||||+.....|+|.+.|++|++.
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 79999999999999999999999999999999999999988777655 489999999999999999999999999875
No 323
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=4e-22 Score=126.99 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l 71 (85)
|+||+||+++|||++.+|+++||||||++||+...+.+.+.+.+...++.|+|++||+.... ..+++++.+
T Consensus 127 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 127 SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 78999999999999999999999999999999988888766544334588999999988765 568998876
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=3e-22 Score=143.06 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+ +.|+|+|||+.+.+. .||++++|++|++. +
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L-~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~ 239 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHL-QEY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 239 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHH-HhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEe
Confidence 799999999999999999999999999999999888776553 333 359999999999875 58999999999864 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 240 ~g~~~~ 245 (552)
T TIGR03719 240 EGNYSS 245 (552)
T ss_pred cCCHHH
Confidence 66554
No 325
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.6e-22 Score=134.51 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|||.||||+|+|||+..|++++||||.++||....++++..+-+...+ +..|++|||.++++ ..+|++++|++|++..
T Consensus 130 SGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred CcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 799999999999999999999999999999998888887654333333 67999999999885 6799999999999864
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|..+++
T Consensus 210 ~g~~e~v 216 (352)
T COG4148 210 SGPLEEV 216 (352)
T ss_pred cCcHHHH
Confidence 877765
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=5.2e-22 Score=130.85 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 73 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 789999999999999999999999999999999888887655443345789999999999876 5999999965
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.8e-22 Score=145.37 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=67.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|++|||||||++||+.+...+.+. +..+ +.|+|+||||..++. .||++++|++|++. +
T Consensus 151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~-L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW-LKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 79999999999999999999999999999999987766544 3333 469999999999985 59999999999885 2
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 228 ~g~~~ 232 (638)
T PRK10636 228 TGNYS 232 (638)
T ss_pred cCCHH
Confidence 6544
No 328
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=131.85 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|-|+.||+.+..+++++|+++|||||||||||.+.+.+-+.++....+|.|||++||.++.+. .||++++|++|+.+ +
T Consensus 132 SKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~ 211 (300)
T COG4152 132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211 (300)
T ss_pred hhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe
Confidence 569999999999999999999999999999999887776666666668999999999999875 69999999999765 5
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+.+++
T Consensus 212 G~v~~i 217 (300)
T COG4152 212 GTVEDI 217 (300)
T ss_pred ccHHHH
Confidence 876543
No 329
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.3e-22 Score=128.54 Aligned_cols=85 Identities=25% Similarity=0.329 Sum_probs=76.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|||||||..+|+.++.+.++++||||.++||.+.+..+++.+.+...+ |+|+++|-||..+.+ ++|+|+-|++|+++.
T Consensus 137 SGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred ccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 799999999999999999999999999999999999998876555544 899999999999985 699999999999985
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|++++++
T Consensus 217 ~G~~~eii 224 (252)
T COG4604 217 QGSPDEII 224 (252)
T ss_pred cCCHHHhc
Confidence 9998863
No 330
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=3.1e-22 Score=126.28 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
|+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.
T Consensus 129 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 7899999999999999999999999999999998888877654444458899999999764
No 331
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1e-21 Score=127.22 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+|-+++||||+.+|++++||||+.||-|...+++++.+.+...+ +.||++|.++..+. ..+||.++|++|+++.
T Consensus 138 SGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~ 217 (237)
T COG0410 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL 217 (237)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence 799999999999999999999999999999999999999776555444 67999999999875 6799999999999985
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+.+++
T Consensus 218 ~G~~~eL 224 (237)
T COG0410 218 SGTAAEL 224 (237)
T ss_pred ecCHHHH
Confidence 887765
No 332
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=7e-22 Score=144.83 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=68.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+ + .|+|++||+..++. .||++++|++|++. +
T Consensus 629 SgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~-~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~ 705 (718)
T PLN03073 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV-LF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPF 705 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH-Hc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 7999999999999999999999999999999998887765543 22 3 49999999999875 59999999999886 3
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|++++
T Consensus 706 ~g~~~~ 711 (718)
T PLN03073 706 HGTFHD 711 (718)
T ss_pred CCCHHH
Confidence 65543
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=1.5e-21 Score=150.30 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCc-ee
Q psy1506 1 MTGKSSCQLCFEAVYKNAD-IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNV-SK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~-illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g-~i 76 (85)
|+|||||++||++|+.+|+ +++|||||+|||+.++..+.+.+.+...+|+|+|+++|+++. + ..+|++++|++| ++
T Consensus 903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 7899999999999999997 999999999999999988887665554578999999999986 3 569999999987 87
Q ss_pred ec-Cccc
Q psy1506 77 TS-GWVE 82 (85)
Q Consensus 77 ~~-g~~~ 82 (85)
.+ |++.
T Consensus 983 v~~G~~~ 989 (1394)
T TIGR00956 983 VYFGDLG 989 (1394)
T ss_pred EEECCcc
Confidence 65 7753
No 334
>PLN03140 ABC transporter G family member; Provisional
Probab=99.86 E-value=1.6e-21 Score=150.67 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC-ceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN-VSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~-g~i~ 77 (85)
|+|||||++||++|+.+|++++|||||+|||+.++..+++.+.+...+|+|+|+++|+++. ...+|++++|++ |++.
T Consensus 1021 SgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 7899999999999999999999999999999999998887765555568999999999974 367999999996 7876
Q ss_pred c-Ccc
Q psy1506 78 S-GWV 81 (85)
Q Consensus 78 ~-g~~ 81 (85)
+ |++
T Consensus 1101 ~~G~~ 1105 (1470)
T PLN03140 1101 YSGPL 1105 (1470)
T ss_pred EECCc
Confidence 4 765
No 335
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.86 E-value=1.4e-21 Score=142.19 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||++||||++++|++++|||||++||+.+.+.+.+.+ +. .+.|+|++||+++.+..+|++++|++
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 799999999999999999999999999999999888776543 32 37899999999998888999999974
No 336
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=1.1e-21 Score=124.84 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=59.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 68 (85)
|+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+...+..+|.-
T Consensus 129 S~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence 78999999999999999999999999999999988888766554334688999999999888777643
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=1.5e-21 Score=123.79 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=58.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 68 (85)
|+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+.+.+..+|.+
T Consensus 125 S~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 125 SSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 78999999999999999999999999999999988877765433334678999999999988777654
No 338
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=1.3e-21 Score=146.20 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+||+.||++|..+| ++++|||||++||+.....+++.+.+...+|.|||+|+|+++.+..||++++| +
T Consensus 491 SgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~ 570 (943)
T PRK00349 491 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVH 570 (943)
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCC
Confidence 789999999999999997 99999999999999999988876555445689999999999988789999999 8
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 571 ~G~iv~~g~~~e~ 583 (943)
T PRK00349 571 GGEVVASGTPEEI 583 (943)
T ss_pred CCEEeeccCHHHH
Confidence 888875 776654
No 339
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=1.5e-21 Score=145.77 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+||+.||++|..+| ++|||||||+|||+.....+++.+.+...+|.|||+|+|+++.+..||++++| +
T Consensus 489 SGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~ 568 (924)
T TIGR00630 489 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIH 568 (924)
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCC
Confidence 789999999999999986 89999999999999999988876655545689999999999988889999999 8
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 569 ~G~Iv~~g~~~el 581 (924)
T TIGR00630 569 GGEVVASGTPEEI 581 (924)
T ss_pred CCEEeeccCHHHH
Confidence 888875 776554
No 340
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.2e-21 Score=125.91 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLN-HVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~ 77 (85)
|.||+||+.|||||+.+|+++|||||++|||..+++.+.+.+...... +.++++|||..+++. ..++++.+++|++.
T Consensus 173 S~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred CHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 789999999999999999999999999999999887887665444433 579999999998875 56999999999886
Q ss_pred c
Q psy1506 78 S 78 (85)
Q Consensus 78 ~ 78 (85)
.
T Consensus 253 ~ 253 (257)
T COG1119 253 A 253 (257)
T ss_pred e
Confidence 5
No 341
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=1.1e-21 Score=139.19 Aligned_cols=58 Identities=31% Similarity=0.417 Sum_probs=52.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
|+|||||++||||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||++
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 789999999999999999999999999999999988887665 4456789999999984
No 342
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.9e-21 Score=136.26 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|.||+|-|+||||+..+++++|||||||+|+....+.+++.+.+...+|.++|+|||+++++ ..||++.+|++|+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 56999999999999999999999999999999999999877655566899999999999886 6799999999998764
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=2.1e-21 Score=138.76 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC-ceee-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN-VSKT- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~-g~i~- 77 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+ .+ ++|++||+++++. .||++++|++ |++.
T Consensus 445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~-~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL-LEF-AG-CAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHC-CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 799999999999999999999999999999999888887654 443 23 8999999999875 5999999986 5654
Q ss_pred c-Cccc
Q psy1506 78 S-GWVE 82 (85)
Q Consensus 78 ~-g~~~ 82 (85)
+ |+.+
T Consensus 522 ~~g~~~ 527 (552)
T TIGR03719 522 FEGNYS 527 (552)
T ss_pred eCCCHH
Confidence 3 5543
No 344
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=1.8e-21 Score=139.20 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=66.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC-ceee-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN-VSKT- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~-g~i~- 77 (85)
|+||+||++||||++.+|+++||||||++||+.+...+.+.+ ... .+ ++|++||+++++. .||++++|++ |++.
T Consensus 447 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~-~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL-LEF-PG-CAVVISHDRWFLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HhC-CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence 799999999999999999999999999999999888887654 433 34 8999999999874 6999999986 6664
Q ss_pred -cCcccc
Q psy1506 78 -SGWVEE 83 (85)
Q Consensus 78 -~g~~~~ 83 (85)
.|+.++
T Consensus 524 ~~g~~~~ 530 (556)
T PRK11819 524 FEGNFQE 530 (556)
T ss_pred ecCCHHH
Confidence 365543
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=2.7e-21 Score=139.39 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g 74 (85)
|+||+||++||+||+.+|++++|||||++||+..+..+.+.+.+... +.|+|++||+++.+. .+|++++|+++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 78999999999999999999999999999999988888776544444 889999999999875 58999999763
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=2.4e-21 Score=142.02 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.....+.+.+ ..+ +.|+|+|||+..++. .||++++|++|++. +
T Consensus 346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~ 422 (718)
T PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL-LKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTY 422 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 799999999999999999999999999999999887776543 333 679999999999885 59999999999885 3
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 423 ~g~~~ 427 (718)
T PLN03073 423 KGDYD 427 (718)
T ss_pred CCCHH
Confidence 5543
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=2.5e-21 Score=149.19 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc-hh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ-YL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~g~i~ 77 (85)
|+|||||++||++|+.+|++++|||||+|||+.++..+.+.+.+... .|+|+|+++|++. .+ ..+|++++|++|++.
T Consensus 211 SGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred CcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 79999999999999999999999999999999999999876655444 3889999999974 44 569999999999887
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
+ |+++++
T Consensus 291 ~~G~~~~~ 298 (1394)
T TIGR00956 291 YFGPADKA 298 (1394)
T ss_pred EECCHHHH
Confidence 5 777653
No 348
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=2.3e-21 Score=140.42 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=66.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEc-Cceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLN-NVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~-~g~i~~ 78 (85)
|+||+||++||||++.+|++|||||||++||+.+...+.+. +..+ +.|+|+||||..++. .||++++++ +|++..
T Consensus 442 SgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEEL-LDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-HHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 79999999999999999999999999999999987766543 4443 459999999999875 699999997 788752
Q ss_pred --Ccccc
Q psy1506 79 --GWVEE 83 (85)
Q Consensus 79 --g~~~~ 83 (85)
|+.++
T Consensus 519 ~~g~y~~ 525 (635)
T PRK11147 519 YVGGYHD 525 (635)
T ss_pred ccCCHHH
Confidence 65543
No 349
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.7e-21 Score=123.54 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~ 73 (85)
|+|.+|||.+||.|+ .++++++||||||+||.......++...+...+|..|+.|-||++.. .+|||+++|.+
T Consensus 137 SGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred CchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 799999999999998 34568999999999999988888876555556789999999999985 68999999999
Q ss_pred ceeec-CcccccC
Q psy1506 74 VSKTS-GWVEEIL 85 (85)
Q Consensus 74 g~i~~-g~~~~~~ 85 (85)
|++.. |.|++++
T Consensus 217 Grv~a~g~p~~vl 229 (259)
T COG4559 217 GRVIASGSPQDVL 229 (259)
T ss_pred CeEeecCCHHHhc
Confidence 99875 9998864
No 350
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=3.6e-21 Score=122.19 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=55.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~ 69 (85)
|+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+...+ .+++++
T Consensus 129 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 78999999999999999999999999999999988877765544345688999999987543 234443
No 351
>KOG0056|consensus
Probab=99.85 E-value=1.9e-21 Score=137.41 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=75.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||.||||++||+++++|.+++|||.||+||..+.+.+. ..+.....++|.|+|.|+++.+-++|.|+++++|.|++ |
T Consensus 676 SGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQ-aaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 676 SGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ-AALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERG 754 (790)
T ss_pred CCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHH-HHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecC
Confidence 799999999999999999999999999999999877764 55666678899999999999999999999999999987 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
..+|++
T Consensus 755 ~HeeLl 760 (790)
T KOG0056|consen 755 RHEELL 760 (790)
T ss_pred cHHHHH
Confidence 888763
No 352
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.2e-21 Score=123.37 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcC--cee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNN--VSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~--g~i 76 (85)
|+||+||+.+||||..+|++++||||+++||.-+++.+...++..|. .|+.+++|||+.++. -.+++.++|.. |++
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 79999999999999999999999999999999998888777777776 489999999999885 46899999985 455
Q ss_pred e
Q psy1506 77 T 77 (85)
Q Consensus 77 ~ 77 (85)
+
T Consensus 214 v 214 (259)
T COG4525 214 V 214 (259)
T ss_pred e
Confidence 4
No 353
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=1.3e-20 Score=121.06 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=63.3
Q ss_pred CCCchhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE
Q psy1506 1 MTGKSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV 69 (85)
Q Consensus 1 ~~g~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~ 69 (85)
|+||+||+++|||++. +|++++|||||++||+.....+.+.+.+...++.|+|++||+++.+. .+++++
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~ 204 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLE 204 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEE
Confidence 6899999999999984 67899999999999999888876654433334889999999998875 589999
Q ss_pred EEcCce
Q psy1506 70 FLNNVS 75 (85)
Q Consensus 70 ~l~~g~ 75 (85)
++++|.
T Consensus 205 ~~~~~~ 210 (213)
T cd03279 205 VIKTPG 210 (213)
T ss_pred EEecCC
Confidence 999874
No 354
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=1.2e-20 Score=141.23 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||+.||++|+.+| +++||||||+|||+.....+++.+.+...+|.|+|+++|+++.+..+|+++.|
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~ 911 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGD 911 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCC
Confidence 789999999999999999 99999999999999988888876544444688999999999988889999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 912 ~~G~Iv~~Gt~~el 925 (943)
T PRK00349 912 GGGEIVATGTPEEV 925 (943)
T ss_pred CCCEEEEeCCHHHH
Confidence 6888875 877664
No 355
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=2.7e-20 Score=139.08 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhc---CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYK---NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~---~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||+.||++|+. +|++++|||||+|||+...+.+.+.+.+...+|.|+|+++|+++.+..+|+++.|
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~ 909 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGD 909 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccC
Confidence 7899999999999997 5999999999999999998888876544445689999999999988789999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 910 ~gG~iv~~G~~~~l 923 (924)
T TIGR00630 910 GGGTIVASGTPEEV 923 (924)
T ss_pred CCCEEEEeCCHHHh
Confidence 6888875 888775
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=1.1e-20 Score=146.04 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc-h-hhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ-Y-LNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~-~-~~~~d~v~~l~~g~i~ 77 (85)
|+|||||+++|++++.+|++++|||||+|||+.++..+.+.+.+... .|.|+|+++|++. . ...+|++++|++|++.
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 79999999999999999999999999999999999999876555444 4789999999974 4 4679999999999987
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
+ |+++++
T Consensus 418 y~G~~~~~ 425 (1470)
T PLN03140 418 YQGPRDHI 425 (1470)
T ss_pred EeCCHHHH
Confidence 5 876654
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.2e-20 Score=117.38 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
|+||+||+.|||-|+..|+++++||||.|||.....+++..+.....+ +.++++||||+..... ++|..+|++|.+++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 799999999999999999999999999999999888888765444444 7899999999998864 89999999998876
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|-++.+
T Consensus 233 ~GLTDrv 239 (258)
T COG4107 233 SGLTDRV 239 (258)
T ss_pred ccccccc
Confidence 766654
No 358
>KOG0054|consensus
Probab=99.82 E-value=2.8e-20 Score=142.16 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|-||||-+++||||+++++|++|||+|+++|+++ ..+.+..++...+++||+.|.|+++.+-.+|||++|++|++.+ +
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHH-HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecC
Confidence 5799999999999999999999999999999985 5555677777778999999999999999999999999999986 8
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
+|++++
T Consensus 1356 sP~~Ll 1361 (1381)
T KOG0054|consen 1356 SPAELL 1361 (1381)
T ss_pred ChHHHH
Confidence 888764
No 359
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.82 E-value=5.7e-20 Score=117.24 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+++|++++ .+|++++|||||++||+.....+.+.+ ....++.++|++||+++.+..+|+++.+..
T Consensus 115 S~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 115 SGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLL-KEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHH-HHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 689999999999987 467999999999999999888887654 444457899999999988878999998864
No 360
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=5.6e-20 Score=120.41 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=62.7
Q ss_pred CCCchhHHHHHHHHhcC----CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~----p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||++|||+++.+ |++++|||||++||+.....+.+.+.+...+|.++|++||+.+.+..||+++++.+
T Consensus 157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 68999999999999864 89999999999999998888876554443458899999999887888999999874
No 361
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.1e-20 Score=118.99 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=68.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~ 77 (85)
|+||||.+++++|.++.|++++|||-|++|||++++.+++.-.+-..+ +.|.++|||+++. +.+.+|.++|++|+|+
T Consensus 150 SGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 150 SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 799999999999999999999999999999999999998765444444 6799999999976 5789999999999986
No 362
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.82 E-value=9.3e-20 Score=116.74 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCchhH------HHHHHHHhcCCCEEEEecCCCCCCHHHHH-HHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSC------QLCFEAVYKNADIYLLDDPLSAVDMHVGK-HLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~------~~laral~~~p~illlDEP~~~LD~~~~~-~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+|| +++|||++.+|+++++|||+++||+.... .+.+.+.+...+ +.++|++||+++....+|+++.|+
T Consensus 117 S~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~ 196 (204)
T cd03240 117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVE 196 (204)
T ss_pred CccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEe
Confidence 7899996 78999999999999999999999999877 777655443334 789999999988877799999997
Q ss_pred C
Q psy1506 73 N 73 (85)
Q Consensus 73 ~ 73 (85)
+
T Consensus 197 ~ 197 (204)
T cd03240 197 K 197 (204)
T ss_pred e
Confidence 5
No 363
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=4.4e-20 Score=143.66 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc------
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN------ 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~------ 72 (85)
|+||+||+.||+||..+| ++++|||||+|||+...+.+++.+.+...+|.|||+|+|+++.+..||++++|.
T Consensus 478 SGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~ 557 (1809)
T PRK00635 478 SGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIF 557 (1809)
T ss_pred CHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccC
Confidence 789999999999999999 899999999999999888888765544456899999999999777899999996
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 558 gG~Iv~~G~~~ei 570 (1809)
T PRK00635 558 GGEVLFNGSPREF 570 (1809)
T ss_pred CCEEEEecCHHHH
Confidence 667764 665543
No 364
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=5.1e-20 Score=143.30 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc-----
Q psy1506 1 MTGKSSCQLCFEAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN----- 72 (85)
Q Consensus 1 ~~g~~~~~~laral~---~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~----- 72 (85)
|+||+||++|||+|+ .+|+++||||||+|||+...+.+++.+.+...+|.|+|+++|+++.+..+|++++|.
T Consensus 811 SGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~ 890 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGN 890 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCC
Confidence 789999999999998 699999999999999999988888765544456899999999999887799999995
Q ss_pred -Cceeec-Cccccc
Q psy1506 73 -NVSKTS-GWVEEI 84 (85)
Q Consensus 73 -~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 891 ~~G~iv~~Gtpeel 904 (1809)
T PRK00635 891 LGGYLLASCSPEEL 904 (1809)
T ss_pred CCCEEEEeCCHHHH
Confidence 567654 777654
No 365
>KOG0061|consensus
Probab=99.81 E-value=3.2e-20 Score=134.28 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||+|+++|.-++.+|.++++||||+|||...+..+.+.+.+..++|+|||++=|++.. + ...|++++|.+|+.++
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 7899999999999999999999999999999999999998776666679999999999965 3 6689999999998876
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|++++.
T Consensus 252 ~G~~~~~ 258 (613)
T KOG0061|consen 252 SGSPREL 258 (613)
T ss_pred ecCHHHH
Confidence 887653
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=4e-20 Score=131.92 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=66.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~ 78 (85)
|+|||-|++||+||..+|++|||||||++||..+...+ +..+.. .+| |+|+||||-.++.. |++|+.+++|++. +
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 79999999999999999999999999999999866655 444443 245 99999999999965 8999999999775 3
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|..+
T Consensus 232 ~Gny~ 236 (530)
T COG0488 232 KGNYS 236 (530)
T ss_pred cCCHH
Confidence 6554
No 367
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1e-19 Score=115.82 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~ 78 (85)
++||||||++||||.-+|+++|.||..++||...+..+....+.... -|.+.|+|+.++..+++ +|+|++|++|++++
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE 230 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence 57999999999999999999999999999999988888776665544 38999999999999986 89999999999875
Q ss_pred -CcccccC
Q psy1506 79 -GWVEEIL 85 (85)
Q Consensus 79 -g~~~~~~ 85 (85)
|++.+++
T Consensus 231 ~G~t~~v~ 238 (267)
T COG4167 231 RGSTADVL 238 (267)
T ss_pred cCChhhhh
Confidence 9888764
No 368
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=6.3e-20 Score=117.26 Aligned_cols=83 Identities=14% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
||||||++.|++.++.+|+++++|||++|+......+.- .+++....++++++|.||+.++. .+++|-+|+.|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 799999999999999999999999999999766555554 45666677889999999999985 589999999998864
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+.+++
T Consensus 228 Gsld~v 233 (249)
T COG4674 228 GSLDEV 233 (249)
T ss_pred ccHHHh
Confidence 887654
No 369
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=1.8e-19 Score=117.15 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=60.3
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+||++||||++. +|+++++||||++||+...+.+++.+ ..+.++.++|+++|+.+....||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 6899999999999973 68999999999999999888887654 44445778888899877677899999986
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=119.86 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|-|||-|+.||.+|+++|++++|||||-|||..++..+.+ +++.. . ++.||+++||+++.+ ..|+||+.++.|++.
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~-Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE-FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH-HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence 5699999999999999999999999999999988777765 44443 3 478999999999886 579999999999988
Q ss_pred c-Ccccc
Q psy1506 78 S-GWVEE 83 (85)
Q Consensus 78 ~-g~~~~ 83 (85)
+ |+.++
T Consensus 237 ~dg~l~~ 243 (325)
T COG4586 237 FDGTLAQ 243 (325)
T ss_pred ecccHHH
Confidence 6 66543
No 371
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=2e-19 Score=114.75 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=63.1
Q ss_pred CCCchhHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC---CcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK---DKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral----~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~---~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+++|+|+ +.+|++++|||||+++|+.....+.+.+.+...+ +.+++++||+++.+...|+|.+|+.
T Consensus 111 S~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~ 190 (198)
T cd03276 111 SGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRM 190 (198)
T ss_pred ChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEe
Confidence 68999999999999 5899999999999999999888887765554332 3589999999998877799999986
Q ss_pred c
Q psy1506 74 V 74 (85)
Q Consensus 74 g 74 (85)
+
T Consensus 191 ~ 191 (198)
T cd03276 191 K 191 (198)
T ss_pred c
Confidence 4
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.80 E-value=2.6e-19 Score=126.46 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|||-.||+.|||.|..+|++|||||||.|+|..+..++++.+.+...+|.+|+++|.++.++ ..||||++|++|++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 79999999999999999999999999999999999999987666667899999999999875 579999999999886
No 373
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=3.4e-19 Score=124.95 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=70.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|-|++|||.|.+||+.+|++|||||||+-|-|...++++..+.+...+|+|||+|||.+.++ ..||++.+|++|+++
T Consensus 142 sVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 142 SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 45999999999999999999999999999999999999987666666899999999999886 569999999999865
No 374
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.79 E-value=5.1e-19 Score=111.41 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+++||+++ .+|+++++|||++++|+...+.+.+.+.+...+|.++|++||+++....+|+++.+.+
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 689999999999996 6999999999999999998888876654444456899999999988878999999875
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=6.5e-19 Score=115.49 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=61.3
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+||+++|||++ .+|+++++||||++||+...+.+++.+ ..+.+|.++|++||+.+....||+++-+.
T Consensus 168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l-~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI-KTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 689999999999998 578999999999999999888887654 44456889999999977778899998775
No 376
>KOG0059|consensus
Probab=99.78 E-value=3.2e-19 Score=133.20 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+|+|.|+++|.|++.+|++++|||||+|+||..++.++..+.+..++|+.+|++||.+++.+ .|+|+.+|.+|++..
T Consensus 700 SgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 799999999999999999999999999999999888887654443445569999999999986 599999999999876
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 780 Gs~q~L 785 (885)
T KOG0059|consen 780 GSPQEL 785 (885)
T ss_pred cChHHH
Confidence 887764
No 377
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=6.7e-19 Score=110.55 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch-hhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY-LNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i 76 (85)
|||.+||++++|-|...|+|++||||||+||+.+.+.+-..+.+..+ ++..+++|||+.+. +.++++++.+..|++
T Consensus 135 SGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred cchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 79999999999999999999999999999999988888665555553 57899999999987 688999999998865
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=1e-18 Score=112.57 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=61.2
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+++|||++. +|+++++||||++||+.....+.+. +..+.++.++|++||+.+....||++++|..
T Consensus 129 S~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~-l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 129 SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANY-IKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 6899999999999974 5799999999999999988877655 4455567799999999766778999999975
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.2e-18 Score=113.77 Aligned_cols=84 Identities=26% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|.||+.|++++-|...+|+|||+||..+..|+...++-...+.+...++.|+|+|||+++.++ .||++++|++|++..
T Consensus 149 SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~ 228 (249)
T COG1134 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME 228 (249)
T ss_pred cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc
Confidence 689999999999999999999999999999999888877665444467899999999999985 699999999999975
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 229 G~~~~v 234 (249)
T COG1134 229 GSPEEV 234 (249)
T ss_pred CCHHHH
Confidence 998875
No 380
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=9e-18 Score=104.03 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+.+++++.. +|+++++|||++++|+.....+...+.+...++.+++++||+.+....+|+++.|+.
T Consensus 79 S~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred cccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 6899999999999986 789999999999999998888877655544457899999999998878899999864
No 381
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.4e-17 Score=110.75 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+||+||+++|++++. +|+++++|||+++||+.....+.+.+ ..+.++.++|++||++.....+|+++.+.++
T Consensus 172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 6899999999997654 99999999999999999888887654 4445578999999999877779999999865
No 382
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=1.7e-17 Score=107.00 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCCchhHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-C-cEEEEEecCcch-hhhCC--eEEEE
Q psy1506 1 MTGKSSCQLCFEAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-D-KTRILVTHQLQY-LNHVD--QIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral----~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~-~tvi~vtH~~~~-~~~~d--~v~~l 71 (85)
|+||+|++.+++++ +.+|+++++||||++||+.....+++.+.....+ | .++|++||++.. ...+| +++++
T Consensus 128 S~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l 207 (213)
T cd03277 128 SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCV 207 (213)
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEE
Confidence 78999998877554 5899999999999999999988888766554444 4 579999999755 45554 78888
Q ss_pred cCce
Q psy1506 72 NNVS 75 (85)
Q Consensus 72 ~~g~ 75 (85)
++|+
T Consensus 208 ~~g~ 211 (213)
T cd03277 208 YNGP 211 (213)
T ss_pred ecCc
Confidence 8875
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=119.12 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=64.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~ 78 (85)
|||||.|+.||+.++.+|.+|||||||+.||..+.+.+- ..+..+ ..|+|+||||..++.. +++++.+++ .+. +
T Consensus 441 SGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe-~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE-EALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred CHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 799999999999999999999999999999998766554 434333 3599999999999965 899999986 443 2
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|+.++
T Consensus 517 ~g~y~~ 522 (530)
T COG0488 517 EGGYED 522 (530)
T ss_pred CCCHHH
Confidence 65544
No 384
>KOG0062|consensus
Probab=99.73 E-value=2.1e-17 Score=116.75 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~ 77 (85)
|||||+||+||...+.+|.+|+|||||+.||.++...+.+. ++.+ +..||+||||.+++.. |+++++.++|.+.
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~A-l~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKA-LKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHH-HHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 79999999999999999999999999999999877666543 3333 3479999999999864 9999999999875
No 385
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.72 E-value=2.4e-17 Score=118.45 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCCchhHHHHHHHHhcC----CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~----p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
|+||+||++||++++.. |+++|||||++|+|+.+...+...+ ....++.+||+|||++.....||+++++++|.
T Consensus 442 SgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l-~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL-AQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred CHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 78999999999999985 6999999999999999888887654 44456899999999998887899999998753
No 386
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1.4e-17 Score=103.29 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=61.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+|||.||++.|+|+..|+.++||||+|.||..-+....++.+.+.. .|...+.||||.+..+...||+-|
T Consensus 136 SGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred CcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 79999999999999999999999999999999877777766666654 588999999999888766777655
No 387
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.70 E-value=5e-17 Score=115.96 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHh----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506 1 MTGKSSCQLCFEAVY----------KNADIYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69 (85)
Q Consensus 1 ~~g~~~~~~laral~----------~~p~illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~ 69 (85)
|+||+||++||+||+ .+|++++||||| ++||+.....+... +... ++.++|++||+......+|+++
T Consensus 470 S~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~-l~~~-~~~~iiiish~~~~~~~~d~~~ 547 (562)
T PHA02562 470 SQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSI-LDSL-KDTNVFVISHKDHDPQKFDRHL 547 (562)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHH-HHhC-CCCeEEEEECchhchhhhhcEE
Confidence 799999999999987 599999999998 78999988888765 4444 6789999999977777789999
Q ss_pred EEcC
Q psy1506 70 FLNN 73 (85)
Q Consensus 70 ~l~~ 73 (85)
+|.+
T Consensus 548 ~l~~ 551 (562)
T PHA02562 548 KMEK 551 (562)
T ss_pred EEEE
Confidence 9986
No 388
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-16 Score=103.11 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC--CeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV--DQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~--d~v~~l~~g~i~~ 78 (85)
|+|.|+|..|+..++.+|++.|||||-||||..+-+.+.+-+-....++.++++|||....+.+. |++.+|-+|+++.
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 79999999999999999999999999999999877766554333345689999999998888764 9999999999975
Q ss_pred -Ccc
Q psy1506 79 -GWV 81 (85)
Q Consensus 79 -g~~ 81 (85)
|.+
T Consensus 226 sG~~ 229 (251)
T COG0396 226 SGDP 229 (251)
T ss_pred cCCH
Confidence 877
No 389
>PRK10869 recombination and repair protein; Provisional
Probab=99.69 E-value=9.2e-17 Score=115.35 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=64.0
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+||+||++||++++. +|++++||||++|+|..+...+.+.+ ....++.++|+|||++.....+|+.+.+.++
T Consensus 432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l-~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 432 SGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLL-RQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 7899999999999997 58999999999999999888887654 4445678999999999888889999999864
No 390
>KOG0927|consensus
Probab=99.69 E-value=4.3e-17 Score=115.71 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=65.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee-ec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK-TS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i-~~ 78 (85)
|+|||-|++|||+|..+|++++|||||++||.++...+ +..+....+. ++++++|.-+++. .|.+|+.+++++. .+
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeee
Confidence 79999999999999999999999999999999865544 4444433322 8999999999986 5999999998874 34
Q ss_pred -Ccccc
Q psy1506 79 -GWVEE 83 (85)
Q Consensus 79 -g~~~~ 83 (85)
|+.+.
T Consensus 301 ~Gnydq 306 (614)
T KOG0927|consen 301 EGNYDQ 306 (614)
T ss_pred cCCHHH
Confidence 76554
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.65 E-value=1.6e-16 Score=101.30 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+|+..+++++ .+|+++++|||++++|+.....+...+++.+. .+.+++++||+.+....+|++..+++|++..
T Consensus 93 s~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 93 SSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEF 170 (200)
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEE
Confidence 57999999999885 89999999999999999988877655455443 5789999999865567799999999988753
No 392
>PRK03918 chromosome segregation protein; Provisional
Probab=99.64 E-value=8.4e-16 Score=114.22 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCCchhH------HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSC------QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~------~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+++ +++|++++.+|++++|||||++||+.....+...+......+.++|+|||+..+...||++++|+.
T Consensus 790 S~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~ 868 (880)
T PRK03918 790 SGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSL 868 (880)
T ss_pred CHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence 7899994 555667889999999999999999998888876544333356799999999887777999999983
No 393
>KOG0062|consensus
Probab=99.64 E-value=9.1e-17 Score=113.54 Aligned_cols=79 Identities=24% Similarity=0.390 Sum_probs=62.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~ 78 (85)
|||-|=|++|||||..+|++|||||||+.||..+...+ +..+..+ +.|+++||||-.++.. |..|+.+++-++. +
T Consensus 200 SGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL-e~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~Y 276 (582)
T KOG0062|consen 200 SGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL-ENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYY 276 (582)
T ss_pred CcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH-HHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhh
Confidence 79999999999999999999999999999999865443 3444433 3799999999999975 7788888765553 2
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+.+
T Consensus 277 kGN~~ 281 (582)
T KOG0062|consen 277 KGNYS 281 (582)
T ss_pred cCcHH
Confidence 5543
No 394
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=5e-16 Score=97.97 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 73 (85)
|+|.+||+.|||.++.+-+|++|||||++||..+++-+.+.+.+....|..++=+-||.+.-. .+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 799999999999999999999999999999999988888765555567999999999987754 4899887753
No 395
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.3e-15 Score=115.38 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=63.2
Q ss_pred CCCchhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE
Q psy1506 1 MTGKSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV 69 (85)
Q Consensus 1 ~~g~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~ 69 (85)
|||++++++||+||+. +|+++|+||||++||+.....++..+......|++|++|||+++... .+++|.
T Consensus 952 SgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~ 1031 (1042)
T TIGR00618 952 SGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRIL 1031 (1042)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEE
Confidence 7999999999999985 79999999999999999888887765444446889999999998864 589999
Q ss_pred EEcC
Q psy1506 70 FLNN 73 (85)
Q Consensus 70 ~l~~ 73 (85)
+++.
T Consensus 1032 v~~~ 1035 (1042)
T TIGR00618 1032 VKKT 1035 (1042)
T ss_pred EEEC
Confidence 9975
No 396
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.61 E-value=2e-15 Score=106.14 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|||+.||+-+||-|..+|+++++.+||.|||..+.+.+.+.+++...+|+.|+++|-+++++ ..||+|.+|.+|++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 79999999999999999999999999999999999999888888778899999999999985 6799999999999874
Q ss_pred Cccc
Q psy1506 79 GWVE 82 (85)
Q Consensus 79 g~~~ 82 (85)
.+++
T Consensus 485 ~~~~ 488 (501)
T COG3845 485 VPPE 488 (501)
T ss_pred cccc
Confidence 4444
No 397
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.7e-15 Score=95.21 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
|.||+.|+++||-+++.+++.|||||+++||.+....+-..+.....+|..|+.+||.+...
T Consensus 132 SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred chhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 78999999999999999999999999999999865555444334455788999999987554
No 398
>KOG0065|consensus
Probab=99.60 E-value=1.3e-16 Score=121.43 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC-cee
Q psy1506 1 MTGKSSCQLCFEAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN-VSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p-~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~-g~i 76 (85)
|+.||+|+.||--|+.+| .|++|||||||||..++..+++.+.+....|+||+++=|+++. .+..|++++|++ |+.
T Consensus 931 s~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqt 1010 (1391)
T KOG0065|consen 931 STEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQT 1010 (1391)
T ss_pred CHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeE
Confidence 688999999999999999 8999999999999999998887766656679999999999975 477899999997 465
Q ss_pred ec-Cccc
Q psy1506 77 TS-GWVE 82 (85)
Q Consensus 77 ~~-g~~~ 82 (85)
++ |+..
T Consensus 1011 VY~G~lG 1017 (1391)
T KOG0065|consen 1011 VYFGPLG 1017 (1391)
T ss_pred EEecCcc
Confidence 54 7654
No 399
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.1e-15 Score=106.18 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeecC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTSG 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~g 79 (85)
|||||+|+++.-|++-+.+|+++||--+.-||..++..++.++-..+ .|+||+.||||-.+...+||.+.+++|++.+-
T Consensus 450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 79999999999999999999999999999999999999888776655 59999999999999999999999999998764
Q ss_pred cc
Q psy1506 80 WV 81 (85)
Q Consensus 80 ~~ 81 (85)
.+
T Consensus 530 tg 531 (546)
T COG4615 530 TG 531 (546)
T ss_pred cc
Confidence 43
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.57 E-value=1.8e-15 Score=98.42 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
-|.=|+|.||.|++.+|+++|.||||+++++.+...++..+..... +|.|+++++||+..+. .||++-+|.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 3788999999999999999999999999999999999876554443 4789999999999874 699999999887654
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
+..+++
T Consensus 241 a~~e~l 246 (330)
T COG4170 241 APSEEL 246 (330)
T ss_pred cchhHH
Confidence 554443
No 401
>PRK01156 chromosome segregation protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=108.52 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCCchhHHHH------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-C-cEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLC------FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-D-KTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~l------aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~-~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+||++++++ ||+++.+|++++|||||++||+.....+...+..... . + .++|++||+..+...||+++.+
T Consensus 803 S~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~ 882 (895)
T PRK01156 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEV 882 (895)
T ss_pred CHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEE
Confidence 7899999975 5999999999999999999999987777655432222 2 3 4899999999988889999999
Q ss_pred c
Q psy1506 72 N 72 (85)
Q Consensus 72 ~ 72 (85)
.
T Consensus 883 ~ 883 (895)
T PRK01156 883 K 883 (895)
T ss_pred E
Confidence 7
No 402
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.3e-14 Score=112.06 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCCchh------HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcchhh-h----
Q psy1506 1 MTGKSS------CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQYLN-H---- 64 (85)
Q Consensus 1 ~~g~~~------~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~~~~-~---- 64 (85)
|+||+| |++||||++.+|++++|||||++||+.+...+...+.... ..|.++|++||++.++. .
T Consensus 1201 S~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~ 1280 (1311)
T TIGR00606 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSE 1280 (1311)
T ss_pred chhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhcc
Confidence 789999 9999999999999999999999999998887765543322 13679999999998753 2
Q ss_pred -CCeEEEEc
Q psy1506 65 -VDQIVFLN 72 (85)
Q Consensus 65 -~d~v~~l~ 72 (85)
+++++.+.
T Consensus 1281 ~~~~~~~~~ 1289 (1311)
T TIGR00606 1281 YVEKFYRLK 1289 (1311)
T ss_pred ccceeeeee
Confidence 34555554
No 403
>KOG0927|consensus
Probab=99.56 E-value=3.8e-15 Score=105.97 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=61.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~ 77 (85)
|.||+.||.||+.++..|.+++|||||++||..+...+. ..++.+ ..++|+||||+..+.. ++++++..+|.+.
T Consensus 511 S~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~la-eaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 511 SDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA-EAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred ccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHH-HHHhcc--CCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 689999999999999999999999999999998655543 444443 3489999999998864 7899888887654
No 404
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.56 E-value=9.9e-15 Score=109.90 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+++++||++++ .+|+++|||||+++||+.+...+...+ ....++.++|+|||++..+..||+++.+.
T Consensus 1091 S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~-~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1091 SGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLL-KEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred CccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHH-HHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 799999999999984 677999999999999999888887654 44445678999999998887799886554
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.55 E-value=2e-14 Score=101.10 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=60.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNH-VDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 73 (85)
|||..||+++|.||.+++++++||||++.||.+.+-.+. ..++.. . +++|.++|.||+..+.+ +||+++.++
T Consensus 457 SGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 457 SGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 799999999999999999999999999999998544443 344443 2 46899999999999876 799999864
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=100.34 Aligned_cols=72 Identities=25% Similarity=0.334 Sum_probs=60.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 73 (85)
|||..||++||.|+.++++++++|||+|-||...+-..... ++.+. .+++|++|.||+..+.+ +|-|.++.+
T Consensus 215 SGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~-Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV-IRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH-HHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 79999999999999999999999999999999865555444 44444 47999999999999976 788877764
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.54 E-value=2e-14 Score=103.66 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+|++||+++||.++++|++++|||.|++||+.+...+++.+ +....+.|+|-|+|+.......++.+-+.
T Consensus 517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 689999999999999999999999999999999888887664 44446889999999987766555554443
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=3e-14 Score=94.50 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=56.0
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhC---Ce
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHV---DQ 67 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~---d~ 67 (85)
|+||+|++++|++|+ .+|+++++|||+++||+...+.+++.+.+ . + .+++++|+...+ ..| .+
T Consensus 185 S~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~-~--~-q~ii~~~~~~~~~~~~~~~~~ 260 (270)
T cd03242 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG-R--V-QTFVTTTDLADFDALWLRRAQ 260 (270)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc-C--C-CEEEEeCCchhccchhccCcc
Confidence 689999999999985 79999999999999999988877655432 2 2 456666665544 334 68
Q ss_pred EEEEcCcee
Q psy1506 68 IVFLNNVSK 76 (85)
Q Consensus 68 v~~l~~g~i 76 (85)
++.+++|++
T Consensus 261 i~~l~~g~i 269 (270)
T cd03242 261 IFRVDAGTL 269 (270)
T ss_pred EEEEeCcEE
Confidence 999998875
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=5.7e-14 Score=103.62 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc-----
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN----- 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~----- 72 (85)
|||.-||+-||.-|.+.. -+++|||||.||-....+++++.+-+...+|-|||+|.|+++.++.+|.|+=|-
T Consensus 824 SGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~ 903 (935)
T COG0178 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGD 903 (935)
T ss_pred cchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCC
Confidence 799999999999999887 799999999999888888888765555667999999999999999999999884
Q ss_pred -Cceeec-Cccccc
Q psy1506 73 -NVSKTS-GWVEEI 84 (85)
Q Consensus 73 -~g~i~~-g~~~~~ 84 (85)
.|.++. |+|+++
T Consensus 904 ~GG~iva~GTPeev 917 (935)
T COG0178 904 GGGEIVASGTPEEV 917 (935)
T ss_pred CCceEEEecCHHHH
Confidence 466764 999886
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=3.4e-14 Score=92.17 Aligned_cols=74 Identities=12% Similarity=0.000 Sum_probs=58.5
Q ss_pred CCCchhHHHHHHHH--hcCCCEEEEecC---CCCCCHHHHHHHHHHHHhhh--cCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAV--YKNADIYLLDDP---LSAVDMHVGKHLFEDCISGF--LKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral--~~~p~illlDEP---~~~LD~~~~~~i~~~~~~~~--~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+|++++..+++++ +.+|+++||||| |+++|+....... ++.+ ..+.+++++||..+....|+++..+++
T Consensus 91 S~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i---l~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 91 STFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI---AEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred ChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH---HHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 68999999999999 899999999999 8889987654332 2222 247899999997444567899888888
Q ss_pred ceee
Q psy1506 74 VSKT 77 (85)
Q Consensus 74 g~i~ 77 (85)
|++.
T Consensus 168 g~~~ 171 (222)
T cd03285 168 LHVT 171 (222)
T ss_pred EEEE
Confidence 8764
No 411
>KOG0066|consensus
Probab=99.50 E-value=7.1e-14 Score=98.72 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee--
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-- 77 (85)
|+||+.||++|-.-+..|+++||||||++||.+....+.+. ++.+ +..||+||||...+.. ....+++++-.|.
T Consensus 706 SGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 706 SGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 79999999999999999999999999999999866655433 3333 3479999999888754 4678888775443
Q ss_pred cCcccc
Q psy1506 78 SGWVEE 83 (85)
Q Consensus 78 ~g~~~~ 83 (85)
.|+.++
T Consensus 783 dGdFeD 788 (807)
T KOG0066|consen 783 DGDFED 788 (807)
T ss_pred cccHHH
Confidence 255443
No 412
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.49 E-value=1.1e-13 Score=105.25 Aligned_cols=73 Identities=16% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCCchhHHHHHHHHhc--------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYK--------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~--------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l 71 (85)
|+||+++++||+||+. +|+++++||||++||+.....++..+......|++|++|||....... ..++.|-
T Consensus 951 SgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~ 1030 (1047)
T PRK10246 951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK 1030 (1047)
T ss_pred CHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEE
Confidence 7999999999999995 899999999999999998888887654444568999999997666544 5677766
Q ss_pred cC
Q psy1506 72 NN 73 (85)
Q Consensus 72 ~~ 73 (85)
..
T Consensus 1031 k~ 1032 (1047)
T PRK10246 1031 KI 1032 (1047)
T ss_pred EC
Confidence 53
No 413
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.46 E-value=2.2e-13 Score=103.04 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||++++++|++|+. +|++++||||+++||+.+...+... +..+.++..+|++||+...+..||+++.+.
T Consensus 1076 Sgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~-l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1076 SGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKL-IREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHH-HHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 7999999999999984 7899999999999999988877664 455555678999999988778899987765
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.45 E-value=2.2e-13 Score=86.90 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=58.6
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVSKT 77 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~ 77 (85)
.++++..+.++..+|+++++|||++++|+.....+...+++.. ..+.++|++||+.+....++++..++++.+.
T Consensus 95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~ 169 (202)
T cd03243 95 ELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHME 169 (202)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEE
Confidence 4566777788889999999999999999987776665545443 3478999999998887777877777776664
No 415
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.44 E-value=1.7e-14 Score=91.46 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=67.3
Q ss_pred CCCchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHHHHHHHHHHHh-hhcCCcEEEEEecCcch-hhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHVGKHLFEDCIS-GFLKDKTRILVTHQLQY-LNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~-------~~p~illlDEP~~~LD~~~~~~i~~~~~~-~~~~~~tvi~vtH~~~~-~~~~d~v~~l 71 (85)
|+|.=|||-+|...+ -..+++++|||.++||..-...+ ..++. ....|.+||+.+||++. ++.+|+++.+
T Consensus 127 SGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL 205 (248)
T COG4138 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLL 205 (248)
T ss_pred CcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHH
Confidence 688899998887765 23469999999999999744444 44444 45579999999999975 7899999999
Q ss_pred cCceee-cCcccccC
Q psy1506 72 NNVSKT-SGWVEEIL 85 (85)
Q Consensus 72 ~~g~i~-~g~~~~~~ 85 (85)
++|++. .|..+|++
T Consensus 206 ~rG~l~~~G~~~eVl 220 (248)
T COG4138 206 KRGKLLASGRREEVL 220 (248)
T ss_pred hcCeEEeecchhhhc
Confidence 999886 49888875
No 416
>PRK02224 chromosome segregation protein; Provisional
Probab=99.43 E-value=5.5e-13 Score=99.52 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCchh------HHHHHHHHhcC-----C-CEEEEecCCCCCCHHHHHHHHHHHHhhhc-CC-cEEEEEecCcchhhhCC
Q psy1506 1 MTGKSS------CQLCFEAVYKN-----A-DIYLLDDPLSAVDMHVGKHLFEDCISGFL-KD-KTRILVTHQLQYLNHVD 66 (85)
Q Consensus 1 ~~g~~~------~~~laral~~~-----p-~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~-~tvi~vtH~~~~~~~~d 66 (85)
|+||++ |+++++++..+ | ++++|||||+++|+.....+...+ ..+. .| .++|++||+..++..+|
T Consensus 783 S~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l-~~~~~~~~~qviiish~~~~~~~ad 861 (880)
T PRK02224 783 SGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLV-ESMRRLGVEQIVVVSHDDELVGAAD 861 (880)
T ss_pred CccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHH-HHHHhcCCCeEEEEECChHHHHhcC
Confidence 799999 89999998863 2 679999999999999887777543 4433 34 47999999999887899
Q ss_pred eEEEEcCc
Q psy1506 67 QIVFLNNV 74 (85)
Q Consensus 67 ~v~~l~~g 74 (85)
+++.+.+.
T Consensus 862 ~~~~~~~~ 869 (880)
T PRK02224 862 DLVRVEKD 869 (880)
T ss_pred eeEEeecC
Confidence 99999753
No 417
>PRK00064 recF recombination protein F; Reviewed
Probab=99.43 E-value=5.8e-13 Score=91.65 Aligned_cols=73 Identities=25% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h--CCeE
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H--VDQI 68 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~--~d~v 68 (85)
|+||++++.+|++++ .+|++++||||+++||+..++.+++.+. .. +..+++++|+...+. . .+++
T Consensus 275 S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~-~~--~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 275 STGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLK-GL--GAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHh-cc--CCEEEEEcCChhhhhhhhccCcE
Confidence 789999999999885 7999999999999999998777765432 21 457899999876543 2 3578
Q ss_pred EEEcCcee
Q psy1506 69 VFLNNVSK 76 (85)
Q Consensus 69 ~~l~~g~i 76 (85)
+.+++|++
T Consensus 352 ~~v~~G~i 359 (361)
T PRK00064 352 FHVEQGKI 359 (361)
T ss_pred EEEeCCEE
Confidence 99999876
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.34 E-value=4.2e-12 Score=93.93 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc------
Q psy1506 1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN------ 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~------ 72 (85)
|+|..||+-||.-+-++=- +++||||+.||-+....+++..+.+....|-|+|+|.||.+.+..+|+++=+-
T Consensus 483 SGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~ 562 (935)
T COG0178 483 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEH 562 (935)
T ss_pred ChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcC
Confidence 7999999999999987654 89999999999998888888776655556889999999999999999999874
Q ss_pred Cceeec-CcccccC
Q psy1506 73 NVSKTS-GWVEEIL 85 (85)
Q Consensus 73 ~g~i~~-g~~~~~~ 85 (85)
.|.+++ |+|++++
T Consensus 563 GGeIv~~Gtp~~i~ 576 (935)
T COG0178 563 GGEIVAEGTPEELL 576 (935)
T ss_pred CCEEEEccCHHHHH
Confidence 467775 9988764
No 419
>KOG0066|consensus
Probab=99.34 E-value=2.6e-13 Score=95.91 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=60.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~ 77 (85)
|+|-|-||++||||..+|-+|.|||||+.||......+ ...++-| .+|.++||||-.++.. |..|+.|++.++.
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 78999999999999999999999999999999643332 3334444 3599999999999964 8999999876553
No 420
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=5.7e-12 Score=86.96 Aligned_cols=59 Identities=22% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCCchhHHHHHHHHhc---------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 1 MTGKSSCQLCFEAVYK---------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 1 ~~g~~~~~~laral~~---------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
|+||++++.+|.+|+. +|+++|||||+++||+..++.+++.+.. .|..+++++|+.+.+
T Consensus 277 S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~---~~~qv~it~~~~~~~ 344 (365)
T TIGR00611 277 SQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS---LGVQVFVTAISLDHL 344 (365)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh---cCCEEEEEecChhhc
Confidence 7899999999999999 9999999999999999877777654322 257999999987654
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.28 E-value=2.1e-11 Score=78.24 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||++.++||--|+ ..+++++||||.++||..+...+... +....++.-+|++||+...+..+++.+.+.
T Consensus 138 SgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~-l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 138 SGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADL-LKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp -HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHH-HHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 789999999986653 67889999999999999998888765 445556688999999998888888766553
No 422
>KOG0060|consensus
Probab=99.27 E-value=1.3e-11 Score=88.74 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|.|.+||+++||.++++|++-+|||.||++|.+....+++.+. +.|.|.|-|+|+....+.-|.++.|+.
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 6899999999999999999999999999999998777775532 348899999999888888888888875
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.27 E-value=1.2e-11 Score=78.13 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchhhhCC
Q psy1506 9 LCFEAVYK--NADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYLNHVD 66 (85)
Q Consensus 9 ~laral~~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d 66 (85)
.+++++.. +|+++++|||++|+|+.....+...+++... + +.+++++||+.+....++
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 45666665 9999999999999999877777666555443 3 789999999986555554
No 424
>KOG2355|consensus
Probab=99.25 E-value=2.7e-11 Score=78.66 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|-|||.|+.|++.|++.-++++|||-|-.||.-++..+++.+..... +|.||++.||-++-+ ....+++.+++|++..
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 57999999999999999999999999999999988888876555554 589999999998876 4689999999998863
No 425
>KOG0065|consensus
Probab=99.16 E-value=2.1e-11 Score=93.62 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=70.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch--hhhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY--LNHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~--~~~~d~v~~l~~g~i~ 77 (85)
|+|||+|+++|-+++.+|+++.+||+|.|||..+.-++.+.+.+... -+.|.++.-+.+.. ....|.|.+|.+|.++
T Consensus 262 SGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i 341 (1391)
T KOG0065|consen 262 SGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI 341 (1391)
T ss_pred cCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence 79999999999999999999999999999999998888876555444 36788887787643 5678999999999887
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
+ |+.+++
T Consensus 342 y~Gp~d~~ 349 (1391)
T KOG0065|consen 342 YQGPRDEV 349 (1391)
T ss_pred EeccHHHH
Confidence 5 887664
No 426
>PRK14079 recF recombination protein F; Provisional
Probab=99.15 E-value=2.1e-10 Score=78.79 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+||++++.+|+.|+ .+|++++||||++.||......+++.+... . .+++++- +....+++++.+
T Consensus 265 S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~-q~~it~t--~~~~~~~~~~~~ 338 (349)
T PRK14079 265 SRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---P-QAIVAGT--EAPPGAALTLRI 338 (349)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---C-cEEEEcC--CCCCCCceEEEE
Confidence 789999999999998 899999999999999998777776543221 1 2333322 234568999999
Q ss_pred cCceeec
Q psy1506 72 NNVSKTS 78 (85)
Q Consensus 72 ~~g~i~~ 78 (85)
++|.+..
T Consensus 339 ~~~~~~~ 345 (349)
T PRK14079 339 EAGVFTP 345 (349)
T ss_pred eccEecC
Confidence 9987764
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=2.5e-10 Score=73.69 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=47.1
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C---CcEEEEEecCcchhh
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K---DKTRILVTHQLQYLN 63 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~---~~tvi~vtH~~~~~~ 63 (85)
.+||++++++++.+|+++++|||++|+|+.....+...+++... + +.+++++||+.+...
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 36899999999999999999999999999765556544444432 2 248999999987654
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=1.9e-10 Score=73.93 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH 64 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~ 64 (85)
.|++| +..+.+++.+|+++++|||++|+|+.....+...+++.+. .+.+++++||+.+....
T Consensus 94 ~e~~~-~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 94 SEMSE-TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHH-HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 45564 5666778899999999999999999776666555555443 57899999999877543
No 429
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.08 E-value=4e-10 Score=79.29 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-h-CCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-H-VDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i 76 (85)
||||+.|..||+++...|.+++.||-.|.||+.++..+...+-+..+ .|.|++++||+++... . .|+++.+.-|..
T Consensus 509 StGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 509 STGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred CcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 79999999999999999999999999999999999999887655544 4899999999999874 3 588888765543
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.08 E-value=5.2e-10 Score=71.56 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=42.2
Q ss_pred hHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh
Q psy1506 6 SCQLCFEAVYK--NADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN 63 (85)
Q Consensus 6 ~~~~laral~~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~ 63 (85)
+++.-+...+. +|+++++|||++++|+.....+...+++.. .++.++|++||+++.+.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 34444444445 999999999999999987776654444433 45789999999987653
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.08 E-value=3.1e-10 Score=73.43 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCchhHH----HHHHHH--hcCCCEEEEecC---CCCCCHHHHHHHHHHHHhhh-cC-CcEEEEEecCcchhhhCCeEEE
Q psy1506 2 TGKSSCQ----LCFEAV--YKNADIYLLDDP---LSAVDMHVGKHLFEDCISGF-LK-DKTRILVTHQLQYLNHVDQIVF 70 (85)
Q Consensus 2 ~g~~~~~----~laral--~~~p~illlDEP---~~~LD~~~~~~i~~~~~~~~-~~-~~tvi~vtH~~~~~~~~d~v~~ 70 (85)
.||++.. .+++++ +.+|++++|||| |+++|... +...+++.+ .. +.++|++||+.+....++++..
T Consensus 88 ~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~ 164 (216)
T cd03284 88 GGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPR 164 (216)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCC
Confidence 4666643 355555 469999999999 88888753 222233322 23 7899999999765555665555
Q ss_pred EcCceee
Q psy1506 71 LNNVSKT 77 (85)
Q Consensus 71 l~~g~i~ 77 (85)
+.++++.
T Consensus 165 v~~~~~~ 171 (216)
T cd03284 165 VKNFHVA 171 (216)
T ss_pred eEEEEEE
Confidence 5555543
No 432
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.07 E-value=7.9e-10 Score=83.42 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=58.4
Q ss_pred CCCchhHHHHHHHHh------cC--CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY------KN--ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~--p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|||++=.++||-+|+ .+ -++++|||||..||+.....+...+-.....+..|++|||+.++...++.++.++
T Consensus 817 SGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~ 896 (908)
T COG0419 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVK 896 (908)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEE
Confidence 678877666665544 66 7999999999999999888887665444445799999999998888888888876
Q ss_pred C
Q psy1506 73 N 73 (85)
Q Consensus 73 ~ 73 (85)
.
T Consensus 897 k 897 (908)
T COG0419 897 K 897 (908)
T ss_pred e
Confidence 4
No 433
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.04 E-value=5.3e-10 Score=87.16 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=46.9
Q ss_pred CCCchhHHH----HHHH--------HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 1 MTGKSSCQL----CFEA--------VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 1 ~~g~~~~~~----lara--------l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
|+||+|+++ +|++ +..+|++++|||||+++|+.+...++..+ ..+ +.++|++|+.+.
T Consensus 1249 SgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll-~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1249 SGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLL-RAL--DLDFVMTSEREW 1317 (1353)
T ss_pred CchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH-HHh--CCCEEEEccchh
Confidence 799999996 5755 45799999999999999999888887654 333 678999999764
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=3.9e-10 Score=84.10 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNH 64 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~ 64 (85)
|.||++++.+++++ .+|.++|+|||++|+|+.....+...++..+ ..+.++|++||+.+....
T Consensus 392 S~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 392 SGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred HHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 56899999999998 8999999999999999988777765555544 357899999999876543
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.00 E-value=1.9e-09 Score=67.95 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=48.3
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL 62 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~ 62 (85)
|.|+++.+.++..+...+ .++++|||-++|.|...+.+.+.+ ....+ +.-+|++||.+..+
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l-~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELL-KELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHH-HHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHH-HhhCccCCEEEEeCccchhc
Confidence 579999988888888666 899999999999999888888654 44443 78999999998654
No 436
>KOG0063|consensus
Probab=98.94 E-value=3.6e-09 Score=74.70 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~ 73 (85)
|+|..||.++|.+.+.+++++++|||.+.||.+.+.+....+......+.=+|+|.||++.+.+ .|-+.++..
T Consensus 215 sggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 215 SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred ccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 6899999999999999999999999999999985555443333334457789999999999876 677777753
No 437
>KOG0064|consensus
Probab=98.91 E-value=1.3e-09 Score=78.34 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVF 70 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~ 70 (85)
|+|.+||+++||.++++|++-+|||.||++.+.....+++.. ..-|.+.+-|||++..+.+-...+-
T Consensus 614 sgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~a---k~~gi~llsithrpslwk~h~~ll~ 680 (728)
T KOG0064|consen 614 SGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA---KDAGISLLSITHRPSLWKYHTHLLE 680 (728)
T ss_pred cchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHH---HhcCceEEEeecCccHHHHHHHHHh
Confidence 689999999999999999999999999999888777777643 2247899999999987765444333
No 438
>KOG0063|consensus
Probab=98.82 E-value=4.9e-09 Score=74.07 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG--FLKDKTRILVTHQLQYLNH-VDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~--~~~~~tvi~vtH~~~~~~~-~d~v~~l~~ 73 (85)
|+|..||+++|.+|-+.+++++.|||.+-||.+. +......+.. +..++|-++|.||+-...+ +||+++.+.
T Consensus 458 SggelQRval~KOGGKpAdvYliDEpsAylDSeQ-Ri~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 458 SGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ-RIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred CchhhHHHHHHHhcCCCCceEEecCchhhcChHH-HHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 7899999999999999999999999999999974 3333333333 2356899999999876655 899998864
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.81 E-value=2e-08 Score=62.55 Aligned_cols=71 Identities=15% Similarity=0.001 Sum_probs=48.5
Q ss_pred CCchh------HHHHHHHHhcCCCEEEEecCCCCCC---HHHHHHHHHHHHhhhcCCcEEEEEecCcch---------hh
Q psy1506 2 TGKSS------CQLCFEAVYKNADIYLLDDPLSAVD---MHVGKHLFEDCISGFLKDKTRILVTHQLQY---------LN 63 (85)
Q Consensus 2 ~g~~~------~~~laral~~~p~illlDEP~~~LD---~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~---------~~ 63 (85)
.|+.| +.....+...+|+++++|||++.+| ......+...+......|.|+++++|.... +.
T Consensus 74 ~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~ 153 (187)
T cd01124 74 PAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVE 153 (187)
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCcee
Confidence 45666 4444455667999999999999998 554444443322223458899999997643 43
Q ss_pred -hCCeEEEEc
Q psy1506 64 -HVDQIVFLN 72 (85)
Q Consensus 64 -~~d~v~~l~ 72 (85)
.+|.++.|+
T Consensus 154 ~~aD~ii~l~ 163 (187)
T cd01124 154 YLVDGVIRLR 163 (187)
T ss_pred EeeeEEEEEE
Confidence 479898887
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.78 E-value=9.9e-09 Score=76.64 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY 61 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~ 61 (85)
|.||+++..+++++ .+|.++|+|||++|+|+.....+...++..+. .|.++|++||+.+.
T Consensus 387 S~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 387 SGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 46888888888776 78999999999999999988777555555543 57899999998765
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.77 E-value=3.9e-08 Score=65.71 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--h------------hhCCeEEEEcCceee
Q psy1506 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--L------------NHVDQIVFLNNVSKT 77 (85)
Q Consensus 12 ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~------------~~~d~v~~l~~g~i~ 77 (85)
.+...+|+++++|||++. +.+ ..+++....|.++++++|+... + ..++++++|++|+ .
T Consensus 189 ~i~~~~P~villDE~~~~------e~~-~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~ 260 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGRE------EDV-EALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-G 260 (270)
T ss_pred HHHhCCCCEEEEeCCCcH------HHH-HHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-C
Confidence 334479999999999742 112 2333334468999999997654 3 2369999999876 4
Q ss_pred cCccccc
Q psy1506 78 SGWVEEI 84 (85)
Q Consensus 78 ~g~~~~~ 84 (85)
.|.++++
T Consensus 261 ~g~~~~i 267 (270)
T TIGR02858 261 PGTVEAV 267 (270)
T ss_pred CCceeec
Confidence 5777665
No 442
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.69 E-value=2.9e-08 Score=63.47 Aligned_cols=41 Identities=5% Similarity=0.094 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhcCCCEEEEecCC-----CCCCHHHHHHHHHHHHh
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPL-----SAVDMHVGKHLFEDCIS 44 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~-----~~LD~~~~~~i~~~~~~ 44 (85)
|++++.+||+++.+|+++++|||| ++||+...+.+.+.+.+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 778899999999999999999999 99999988888766543
No 443
>PRK13695 putative NTPase; Provisional
Probab=98.63 E-value=5.1e-08 Score=60.76 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
+.+-+..+++....+|+++++|| |+.++|.... +.+......+.++++++|+......++++..+.+|++..
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~ 155 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYE 155 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEE
Confidence 44556666777778999999999 5555555432 222222345789999999854445689999999988764
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=1.6e-07 Score=70.65 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecCcchh----------hhCCeEEEEcCceee
Q psy1506 13 AVYKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQLQYL----------NHVDQIVFLNNVSKT 77 (85)
Q Consensus 13 al~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~----------~~~d~v~~l~~g~i~ 77 (85)
.+..+|+++++|||+.+| |+...+.+.+.+....+.|.+++++||+++.+ ..|+..++|.+|++.
T Consensus 648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 346899999999999999 68777766655444444688999999998765 358999999888753
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=3.7e-08 Score=65.15 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=58.7
Q ss_pred CCCc--------hhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH-HHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEE
Q psy1506 1 MTGK--------SSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKH-LFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVF 70 (85)
Q Consensus 1 ~~g~--------~~~~~laral~~~p~illlDEP~~~LD~~~~~~-i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~ 70 (85)
|+|+ +|++++||++.++++|.+| ||+.+|..+... +. ..... .+.|.|+++|++......+.|.+
T Consensus 131 sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i---~~~~~~~~~~~ivls~~la~~~~~paI~v 205 (249)
T cd01128 131 SGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI---FEEFKGTGNMELVLDRRLAERRIFPAIDI 205 (249)
T ss_pred CCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH---HHHHhcCCCcEEEEchHHhhCCCCCeEEE
Confidence 6799 9999999999999999999 999999543332 32 22233 56799999999999999999999
Q ss_pred EcCceee
Q psy1506 71 LNNVSKT 77 (85)
Q Consensus 71 l~~g~i~ 77 (85)
|++|.+.
T Consensus 206 l~s~sr~ 212 (249)
T cd01128 206 LKSGTRK 212 (249)
T ss_pred cCCCCcc
Confidence 9998763
No 446
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.58 E-value=2e-07 Score=60.59 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=43.8
Q ss_pred hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchhh
Q psy1506 6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLN 63 (85)
Q Consensus 6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~~ 63 (85)
++++-......+|.++++|||++|.++.....+...+++.+.+ +.+++++||+.+...
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~ 157 (218)
T cd03286 98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD 157 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 3444344445789999999999999999888887765555443 789999999987653
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=6.6e-07 Score=57.56 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~ 77 (85)
|||..=--.+.+.+ ++.-+++||||-++|.|.-+-.++..+-.....|.-+|++||.+-.+.. ..+|+.++.+.+.
T Consensus 131 SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 131 SHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred ccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 45655444455555 6778999999999999986666665543444568899999999877665 4688888766443
No 448
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.41 E-value=6.2e-07 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHH
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDC 42 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~ 42 (85)
.|++++|||||+++|+.+.+.++..+
T Consensus 63 ~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 63 SPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp TBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 37899999999999999888877543
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.40 E-value=1.2e-06 Score=57.06 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchh
Q psy1506 6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYL 62 (85)
Q Consensus 6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~ 62 (85)
+++.-...-+.++.++|+|||.+|.|+.....+...+++.+. . +.++|++||+.+..
T Consensus 99 ~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 99 SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 444444444578999999999999887666555444444433 3 67999999998753
No 450
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.36 E-value=9.2e-07 Score=68.61 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 68 (85)
|||+|+-.++|.-|+ +.+|+++|||--++||..+...+... +....++.-.|+|||+...+..+|+.
T Consensus 1068 SGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~-i~e~s~~sQFIvIThr~~~m~~ad~l 1138 (1163)
T COG1196 1068 SGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARL-IKEMSKETQFIVITHRKGTMEAADRL 1138 (1163)
T ss_pred CCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHH-HHHhCcCCeEEEEEcChHHHHHHHHH
Confidence 799999999887765 78899999999999999998888755 55556778899999998887766553
No 451
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.28 E-value=2.7e-06 Score=64.37 Aligned_cols=53 Identities=11% Similarity=-0.010 Sum_probs=41.6
Q ss_pred HHHHHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 10 CFEAVYKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 10 laral~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
+++++..+|+++++|||+.+| |+...+.+.+.+....+.|.+++++||+++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 567888999999999999999 67766666554433334578999999998765
No 452
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.26 E-value=5.8e-06 Score=59.98 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCchhHHHHHHHHh--c--CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQLCFEAVY--K--NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~~laral~--~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|||..+|++||.-.+ . +.+.++|||--+|+--.++..+-+. ++...+..-|++|||.+.....+|.-+.+.+
T Consensus 433 SGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~-L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 433 SGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKK-LRRLSEHHQVLCVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred chhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHH-HHHHhcCceEEEEecHHHHHhhhcceEEEEE
Confidence 799999999987644 2 2569999999999999988888765 4556777899999999999888877776654
No 453
>KOG0964|consensus
Probab=98.21 E-value=8.6e-07 Score=67.21 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=56.8
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
||||++.++||..++ -.+++++|||.-++||+..+..+... +.......-.|.+|-+++.+..+|+++-.
T Consensus 1099 SGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~l-IkelS~~aQFI~TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1099 SGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADL-IKELSDSAQFITTTFRPELLSVADKFYGV 1172 (1200)
T ss_pred cCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHH-HHHHhhccceEeecccHHHHHHHHhhhce
Confidence 799999999988876 34579999999999999988888654 55566566788888899888888877544
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.14 E-value=2e-05 Score=51.16 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHHHHhhhcCCcEEEEEecCcch-------hhh-CCeEE
Q psy1506 3 GKSSCQLCFEAVYK--NADIYLLDDPLSAV---DMHVGKHLFEDCISGFLKDKTRILVTHQLQY-------LNH-VDQIV 69 (85)
Q Consensus 3 g~~~~~~laral~~--~p~illlDEP~~~L---D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-------~~~-~d~v~ 69 (85)
++.+.+...+.++. +|+++++|||++.+ |......++..+.....++.|+++++|.... +.. +|-++
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI 183 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYL 183 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence 45677788888886 99999999999654 4433334333332223457899999997543 232 57777
Q ss_pred EEc
Q psy1506 70 FLN 72 (85)
Q Consensus 70 ~l~ 72 (85)
.|+
T Consensus 184 ~L~ 186 (234)
T PRK06067 184 KLR 186 (234)
T ss_pred EEE
Confidence 776
No 455
>PF13175 AAA_15: AAA ATPase domain
Probab=98.07 E-value=2.3e-05 Score=53.85 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=44.2
Q ss_pred CCCchhHHHHHHHHh------cC-CC---EEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506 1 MTGKSSCQLCFEAVY------KN-AD---IYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY 61 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~-p~---illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~ 61 (85)
++|-++.+.++..+. .+ +. ++++|||-+.|.|..++.++..+..... .+..+|++||.+..
T Consensus 343 g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 343 GSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 467776666655542 22 22 9999999999999988888766544433 37899999998754
No 456
>KOG0933|consensus
Probab=98.05 E-value=4.9e-06 Score=63.38 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 68 (85)
||||||-|+|+..|. +.+++|||||.-++||.+..+.+-.. ++....+.-.|+||=--..+.+++.+
T Consensus 1084 SGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~m-IkthF~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1084 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRM-IKTHFTHSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred cCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHH-HHhhCCCCeEEEEEchhhccccchhh
Confidence 799999998765543 78899999999999999988888765 45555667788888665556666543
No 457
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.01 E-value=1.7e-05 Score=58.51 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
|+|++|-+++|-.+. .+.++ ++|||++.||+..+..+...++... ..-||+.||+-+
T Consensus 553 S~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e 615 (650)
T TIGR03185 553 SAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEE 615 (650)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHh
Confidence 789999876655433 34556 5699999999987777765444332 457888888754
No 458
>KOG0962|consensus
Probab=97.98 E-value=1.3e-05 Score=62.48 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH---Hhhhc--CCcEEEEEecCcchhh------hCCeEEEEc
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDC---ISGFL--KDKTRILVTHQLQYLN------HVDQIVFLN 72 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~---~~~~~--~~~tvi~vtH~~~~~~------~~d~v~~l~ 72 (85)
|+++|-.+..++.+|-|||||.+||..+...+...+ +...+ .+.-.|++|||-.++. ++++++.+.
T Consensus 1197 RLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1197 RLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVK 1273 (1294)
T ss_pred HHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeec
Confidence 788999999999999999999999999877666543 22222 3568999999987643 245676665
No 459
>PF13166 AAA_13: AAA domain
Probab=97.85 E-value=6.5e-05 Score=55.55 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred CCCchhHHHHHHHHh--c-------CCCEEEEecCCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEecCcchh
Q psy1506 1 MTGKSSCQLCFEAVY--K-------NADIYLLDDPLSAVDMHVGKHLFEDCISGF--LKDKTRILVTHQLQYL 62 (85)
Q Consensus 1 ~~g~~~~~~laral~--~-------~p~illlDEP~~~LD~~~~~~i~~~~~~~~--~~~~tvi~vtH~~~~~ 62 (85)
|.|.+..++||-=|. . +..++++|.|.|+||......+...+.... .+.+-||+-||+..++
T Consensus 502 SEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~ 574 (712)
T PF13166_consen 502 SEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF 574 (712)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence 568888888774332 3 567999999999999998888887766554 4567899999998764
No 460
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=0.00015 Score=49.97 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCchhHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY--KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~--~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~ 72 (85)
|-|++.=++++-+|. +.|.++++|||-.+|-|..-..+... .....+..-|+++||....+.. ...++++.
T Consensus 272 SDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~-~~sAak~sQv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 272 SDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAEL-MRSAAKRSQVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred cccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHH-HHHhhccceEEEEeCCHHHHhhccccceEEec
Confidence 568899999999988 56889999999999999866655544 3444444489999999887654 34555554
No 461
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.80 E-value=0.0001 Score=48.15 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=34.9
Q ss_pred cCCCEEEEecCCCCC----CHHHHHHHHHHHHhhhcCCcEEEEEecCcch--------hhh-CCeEEEEc
Q psy1506 16 KNADIYLLDDPLSAV----DMHVGKHLFEDCISGFLKDKTRILVTHQLQY--------LNH-VDQIVFLN 72 (85)
Q Consensus 16 ~~p~illlDEP~~~L----D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--------~~~-~d~v~~l~ 72 (85)
.+|+++++|||++++ |+...+.+.+.+......|.|++++ |+... ..+ +|-++.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 7665566655433233446666554 54332 122 46677665
No 462
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.75 E-value=6.9e-05 Score=56.58 Aligned_cols=49 Identities=18% Similarity=0.094 Sum_probs=35.9
Q ss_pred HHhcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 13 AVYKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 13 al~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
.+-.+|+++++|||+..|| +...+.+.+.+....+.|.+++++||+++.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 3457899999999999999 555555544433333457899999998764
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.75 E-value=3.6e-05 Score=50.20 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=33.2
Q ss_pred HhcCCCEEEEecCCCC------CCHHHHHHHHHHHHhhhc-CCcEEEEEecCc
Q psy1506 14 VYKNADIYLLDDPLSA------VDMHVGKHLFEDCISGFL-KDKTRILVTHQL 59 (85)
Q Consensus 14 l~~~p~illlDEP~~~------LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~ 59 (85)
...+|+++++| |+++ .|+.....++..+..... .+.++++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7764 588766667665544333 388999999975
No 464
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.68 E-value=0.00018 Score=43.04 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=37.6
Q ss_pred hHHHHHHHHhcCCCEEEEecCCCCCCH----------HHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506 6 SCQLCFEAVYKNADIYLLDDPLSAVDM----------HVGKHLFEDCISGFL-KDKTRILVTHQLQY 61 (85)
Q Consensus 6 ~~~~laral~~~p~illlDEP~~~LD~----------~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~ 61 (85)
.++..+++...+|+++++|||++-++. ...+.+ ..+..... .+.++++++|....
T Consensus 74 ~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 74 LSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL-RELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhcCCceEEEEEecCCc
Confidence 345678888899999999999965443 323333 34444443 47899999997643
No 465
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00034 Score=48.73 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h---CCe
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H---VDQ 67 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~---~d~ 67 (85)
|+||.+-+++|.-|+ .+++||+|||-+|-||..-+..++.. ...+.-+++++-+.+.+. . ..+
T Consensus 277 S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~----~~~~~Q~fvT~t~~~~~~~~~~~~~~ 352 (363)
T COG1195 277 SQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT----IELGVQVFVTTTDLEDIDDNLDENAQ 352 (363)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh----cccCCeEEEEccCHHHhhhhhhccce
Confidence 799999888876655 78899999999999999755554432 233556677666655443 2 347
Q ss_pred EEEEcCceee
Q psy1506 68 IVFLNNVSKT 77 (85)
Q Consensus 68 v~~l~~g~i~ 77 (85)
++..++|.+.
T Consensus 353 ~f~V~~g~i~ 362 (363)
T COG1195 353 MFHVEDGKIT 362 (363)
T ss_pred EEEEecceec
Confidence 8888888763
No 466
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.54 E-value=0.00027 Score=53.39 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHhcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 13 AVYKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 13 al~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
.+..+|.++++|||...|| +...+.+.+.+....+.|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4567899999999999999 666656654443333457899999999755
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.46 E-value=0.00024 Score=45.29 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
++++++..+|+++++|||. |++..... ++....|..++.+.|..+.....+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence 5778899999999999996 66543322 33344688899999988765556666554
No 468
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.27 E-value=0.00029 Score=44.31 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=55.0
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--h-hhCCeEEEEcCc
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--L-NHVDQIVFLNNV 74 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~-~~~d~v~~l~~g 74 (85)
-|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.....++.++++.+|.+.. + ..||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388899999999999999887776 7899998888776543333345688999997743 3 468999998754
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.20 E-value=0.00025 Score=48.12 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEEecCcchhhhCCeEEEEcCceeec-Ccccc
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQLQYLNHVDQIVFLNNVSKTS-GWVEE 83 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~-tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g~~~~ 83 (85)
.-.+..+|..+|+++++|||.+ .+ .+. +++....|. +++.+.|..+.....+|+..|..|.... |.+.+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~ 278 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---DE----AFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFA 278 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---HH----HHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHH
Confidence 3467778999999999999996 22 222 233334454 5688999887655578877776665442 44443
No 470
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.14 E-value=0.0013 Score=50.30 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred hHHHHHHHHhc--CCCEEEEecC---CCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchhhh
Q psy1506 6 SCQLCFEAVYK--NADIYLLDDP---LSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYLNH 64 (85)
Q Consensus 6 ~~~~laral~~--~p~illlDEP---~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~~~ 64 (85)
-...++..+-. ++.++|+||| |+.+|.. .+...+++.+. . +.+++++||..+....
T Consensus 673 E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~---aia~aile~l~~~~~~~~l~aTH~~el~~l 735 (854)
T PRK05399 673 EMTETANILNNATERSLVLLDEIGRGTSTYDGL---SIAWAVAEYLHDKIGAKTLFATHYHELTEL 735 (854)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH---HHHHHHHHHHHhcCCceEEEEechHHHHHH
Confidence 34556666654 8899999999 7778753 33344444443 3 5789999998654333
No 471
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.04 E-value=0.0059 Score=43.66 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCC-----CHHHHHHH----------HHHHHhhhc-CCcEEEEEecCc-chhh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAV-----DMHVGKHL----------FEDCISGFL-KDKTRILVTHQL-QYLN 63 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~L-----D~~~~~~i----------~~~~~~~~~-~~~tvi~vtH~~-~~~~ 63 (85)
||=.+|-..|..|+-..+++||+||-|++- |...++-+ ...+...+. .|.+.|+|.-.. .++.
T Consensus 324 SGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~ 403 (448)
T PF09818_consen 324 SGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFD 403 (448)
T ss_pred CchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHh
Confidence 455689999999999999999999999986 44322222 111112222 366666665544 4578
Q ss_pred hCCeEEEEcCc
Q psy1506 64 HVDQIVFLNNV 74 (85)
Q Consensus 64 ~~d~v~~l~~g 74 (85)
.+|+|+.|++=
T Consensus 404 vAD~Vi~Md~Y 414 (448)
T PF09818_consen 404 VADRVIMMDEY 414 (448)
T ss_pred hCCEEEEecCc
Confidence 89999999874
No 472
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0016 Score=44.77 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=32.2
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 21 YLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 21 lllDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
+++|||+.++|+..+..+++. ++...++.++|++||+++.+
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~-LEep~~~~~~Ilvth~~~~l 156 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKV-LEEPPPQVVFLLVSHAADKV 156 (325)
T ss_pred EEEEechhhCCHHHHHHHHHH-HHhCcCCCEEEEEeCChHhC
Confidence 456899999999988888765 44444578899999998753
No 473
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.92 E-value=0.0049 Score=44.04 Aligned_cols=54 Identities=9% Similarity=-0.091 Sum_probs=40.0
Q ss_pred cC--CCCCCHHHHHHHHHHHHhhhc---CCc-----EEEEEecCcchhhhCCeEEEEcCceeec-Cc
Q psy1506 25 DP--LSAVDMHVGKHLFEDCISGFL---KDK-----TRILVTHQLQYLNHVDQIVFLNNVSKTS-GW 80 (85)
Q Consensus 25 EP--~~~LD~~~~~~i~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g~ 80 (85)
|| ++|+|+.....+.+. ++... +|. ||++.+|+++. ..||++..+.+|++.. +.
T Consensus 273 e~P~~~G~dp~~~~~l~~l-ler~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKL-LERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCccccCCHHHHHHHHHH-HHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence 64 679999877666544 33333 464 89999999985 6789999999998864 44
No 474
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.90 E-value=0.0073 Score=39.68 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=35.7
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL 62 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~ 62 (85)
..+..++|+||+..|=++.....+...+++.+.+ +..++++||..+..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA 169 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence 3566699999999999999888887777766542 67899999987653
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.71 E-value=0.00089 Score=48.07 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhh-hcCCcEEEEEecCcch--------h-hh-CCeEEEEc
Q psy1506 34 VGKHLFEDCISG-FLKDKTRILVTHQLQY--------L-NH-VDQIVFLN 72 (85)
Q Consensus 34 ~~~~i~~~~~~~-~~~~~tvi~vtH~~~~--------~-~~-~d~v~~l~ 72 (85)
.++.++.. +.. ...|.|+++++|+.+. + .+ +|.|+.|+
T Consensus 142 ~r~~l~~L-i~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 142 VRREIFRL-VARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHH-HHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 34555443 343 3458999999997643 1 33 68888886
No 476
>PF13514 AAA_27: AAA domain
Probab=96.33 E-value=0.019 Score=45.07 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHH-hcCCCE-EEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh
Q psy1506 7 CQLCFEAV-YKNADI-YLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN 63 (85)
Q Consensus 7 ~~~laral-~~~p~i-lllDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~ 63 (85)
|++++..+ -.+.++ +|+|++|.+.|..-....+.. +....+..-||+-||+.+.+.
T Consensus 1039 RLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~-L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1039 RLALAELLAEQGEPLPFILDDIFVNFDDERARAALEL-LAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred HHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHH-HHHhccCCeEEEEeccHHHHH
Confidence 67777777 344444 999999999999877777655 455555567777777766544
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.32 E-value=0.035 Score=31.59 Aligned_cols=55 Identities=22% Similarity=0.064 Sum_probs=37.1
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH------HHHhhhcCCcEEEEEecC
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFE------DCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~------~~~~~~~~~~tvi~vtH~ 58 (85)
+..+..+.++-..+|.++++||+..-.+......... ........+..+|.++|.
T Consensus 65 ~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4456667777777789999999999999875554432 111223346788888884
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.30 E-value=0.0086 Score=41.28 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506 8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 68 (85)
-++.++|..+|+++++||+. |+++....+ +....|.+++.+.|..+.....+|+
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l----~aa~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELAL----TAAETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHH----HHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 35778899999999999997 777554333 2345688889999976544333443
No 479
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.0093 Score=42.60 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~-------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
+.|++.|+..+.+.+ .++-++++|+||...|+. +++- ...... ..|.+..+.+|....+..+.+ .+
T Consensus 223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~~~~~s~l~~L~ERag~---~~ 296 (432)
T PRK06793 223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKTLLMESYMKKLLERSGK---TQ 296 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCeeeeeeccchhHHHHhcc---CC
Confidence 357788888877766 788999999999999985 4443 223222 247788887884444544433 25
Q ss_pred Cceee
Q psy1506 73 NVSKT 77 (85)
Q Consensus 73 ~g~i~ 77 (85)
+|.+.
T Consensus 297 ~GSiT 301 (432)
T PRK06793 297 KGSIT 301 (432)
T ss_pred CcceE
Confidence 66553
No 480
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=95.88 E-value=0.048 Score=39.25 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH----------H---Hhhhc-CCcEEEEEecCcch-hhhC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED----------C---ISGFL-KDKTRILVTHQLQY-LNHV 65 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~----------~---~~~~~-~~~tvi~vtH~~~~-~~~~ 65 (85)
||-+++-..|=+++-...+++++||-+++...-... ++.. + +.... .+.++|.|+-.... +..+
T Consensus 322 SGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~a 400 (554)
T COG3044 322 SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVA 400 (554)
T ss_pred CchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhc
Confidence 566788889999999999999999999987542211 1111 1 11121 23788888887765 5678
Q ss_pred CeEEEEcCce
Q psy1506 66 DQIVFLNNVS 75 (85)
Q Consensus 66 d~v~~l~~g~ 75 (85)
||+++|++.+
T Consensus 401 DRaIvMeDhr 410 (554)
T COG3044 401 DRAIVMEDHR 410 (554)
T ss_pred ceEEEecccC
Confidence 9999998754
No 481
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.82 E-value=0.03 Score=43.02 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=33.7
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCcch
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQLQY 61 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~~~ 61 (85)
+.++.++|+||+-.|-|+.....+...+++.+. .+..++++||..+.
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL 717 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFEL 717 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHH
Confidence 467889999999777776666665555554433 46789999998654
No 482
>KOG0996|consensus
Probab=95.79 E-value=0.012 Score=46.31 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=52.6
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|||.|=--+||..++ +..++|+|||.-++||..+.--+ ...++...++.-.|+||=+-+.+..+++.+-+.
T Consensus 1197 SGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIV-anYIkErTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1197 SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV-ANYIKERTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred CcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhH-HHHHHHhccCCeEEEEEehhhHHHHHhhheeeE
Confidence 688887666666654 67889999999999999876544 445666566778888887777666677665544
No 483
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.071 Score=39.58 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=34.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 19 ~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
+++++|.|.+++|.......+..+.....+++-+|+.||+..++
T Consensus 557 kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~ 600 (758)
T COG4694 557 KVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFY 600 (758)
T ss_pred eeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceeh
Confidence 57899999999999876666655555556788999999996554
No 484
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.58 E-value=0.076 Score=33.13 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=43.7
Q ss_pred HHHHHHh--cCCCEEEEecCCCCCCH--HHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC
Q psy1506 9 LCFEAVY--KNADIYLLDDPLSAVDM--HVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN 73 (85)
Q Consensus 9 ~laral~--~~p~illlDEP~~~LD~--~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~ 73 (85)
..|+..+ .+.++++|||-..+++. -..+.+++ +++...++..+|++.++... +..+|.|..|+.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~-ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVD-LLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHH-HHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 3444444 46799999999888533 23455654 34444457799999998743 467999988865
No 485
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.05 Score=38.84 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=31.7
Q ss_pred cCCCEEEEecCCCCCCHH-HHHHHHHHHHhhhcCCcEEEEEe-cCcchhh
Q psy1506 16 KNADIYLLDDPLSAVDMH-VGKHLFEDCISGFLKDKTRILVT-HQLQYLN 63 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~-~~~~i~~~~~~~~~~~~tvi~vt-H~~~~~~ 63 (85)
.++++|++|||...++.. ..+.++..+-....+++.+|+++ |++..+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 379999999999888754 33456554333344566777766 5666554
No 486
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.16 E-value=0.094 Score=33.37 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506 9 LCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV 74 (85)
Q Consensus 9 ~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g 74 (85)
..|+..+ .+.++++|||-..+++.. ..+.+.+ +++...++..+|++-++.. . +..+|.|..|+.+
T Consensus 105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~-~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLE-FLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHH-HHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 4455555 457899999999988543 2344543 3444445678999999864 3 4679999988764
No 487
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.04 E-value=0.093 Score=33.71 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=33.6
Q ss_pred cCCCEEEEecCCCCC------CHHHHHHHHHHHHhhh-cCCcEEEEEecCc---------chhh-hCCeEEEEc
Q psy1506 16 KNADIYLLDDPLSAV------DMHVGKHLFEDCISGF-LKDKTRILVTHQL---------QYLN-HVDQIVFLN 72 (85)
Q Consensus 16 ~~p~illlDEP~~~L------D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~---------~~~~-~~d~v~~l~ 72 (85)
.+++.+++| +.+.+ |...++.+. .+.+.. ..+.|+++++|.. ..+. .||.+++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~-~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELF-RFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHH-HHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 44433 333334343 344443 4588999999942 2233 379999886
No 488
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.084 Score=39.13 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=39.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLN 72 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~ 72 (85)
.|.++|.+||-+.|-|.....++ .+++....+.-+|++||..+.+.. -+.++++.
T Consensus 301 r~~ILLiEEPEahLHPq~q~~l~-~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~lv 357 (581)
T COG3593 301 RPNILLIEEPEAHLHPQLQAVLW-DLLNNLPLGLQRIVTTHSPHLLSLADLDSICRLV 357 (581)
T ss_pred ccceEEEeCchhhcCHHHHHHHH-HHHhcCCcceEEEEEcCCcccccccCcccEEEEE
Confidence 44599999999999998666444 334433345789999999988754 46666554
No 489
>KOG0018|consensus
Probab=94.83 E-value=0.073 Score=41.77 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|||.|=-.+||.-+. +.+|+++|||.-++||-.+..++...+ . ..+.-.|+||=-..+...+|-.+-+.
T Consensus 1053 SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyI-r--~~~~Q~IvISLK~~~y~kadaLVGvy 1125 (1141)
T KOG0018|consen 1053 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYI-R--SSNFQFIVISLKEEFYQKADALVGVY 1125 (1141)
T ss_pred CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHH-h--cCCceEEEEeccHHHhhhhhceeeec
Confidence 789998888887766 557899999999999999888886544 3 45667788887777777776655444
No 490
>PRK06893 DNA replication initiation factor; Validated
Probab=94.21 E-value=0.13 Score=33.38 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred hcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 15 YKNADIYLLDDPLSAV-DMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 15 ~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
+.+++++++||+..-. |....+.++.. +... .++.+++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l-~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDL-FNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHH-HHHHHHcCCcEEEEeCCC
Confidence 3578999999998764 44444455543 4433 3466776666543
No 491
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.02 E-value=0.18 Score=32.38 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=45.1
Q ss_pred HHHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcC
Q psy1506 8 QLCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNN 73 (85)
Q Consensus 8 ~~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~ 73 (85)
...|+..+ .+.++++|||-+.+++.. ..+.+.+. ++...++..+|++-++.. . +..+|.|..|+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~-L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEA-LNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHH-HHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 45566665 457899999999988643 23455543 444445678999999864 3 467999998875
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.99 E-value=0.33 Score=27.81 Aligned_cols=53 Identities=13% Similarity=-0.062 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcc
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQ 60 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~ 60 (85)
......+...++.++++||.... ++.....+...+.... ..+..+|++++...
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34455666778999999998876 3333444443332222 24568888888543
No 493
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.68 E-value=0.22 Score=31.48 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506 8 QLCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV 74 (85)
Q Consensus 8 ~~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g 74 (85)
...|+..+ .+.++++|||-+.+++.. ..+.+.+. ++...++.-+|++.++.. . +..+|.|..|+.-
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~l-L~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~v 157 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEA-LQERPGHQHVIITGRGCPQDLLELADLVTEMRPV 157 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHH-HHhCCCCCEEEEECCCCCHHHHHhCceeeeeccc
Confidence 34555555 567999999999877543 33455543 444445678999999864 3 4679999998753
No 494
>PF12846 AAA_10: AAA-like domain
Probab=93.67 E-value=0.15 Score=33.46 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=33.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN 63 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~ 63 (85)
..|.++++||...-++.......+..+.+..+ .|..++++||++..+.
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~ 267 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLP 267 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHh
Confidence 36779999999888876444444445555544 4889999999876543
No 495
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.16 Score=35.08 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=36.2
Q ss_pred HhcCCC-EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 14 VYKNAD-IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 14 l~~~p~-illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
+..+|+ ++|..+|-+.|-|+.+-.+.+.+......|.-+++.||.-..
T Consensus 256 li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhi 304 (374)
T COG4938 256 LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHI 304 (374)
T ss_pred eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHH
Confidence 334444 889999999999998777776555555679999999996433
No 496
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.25 E-value=0.58 Score=33.17 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCEEEEec----------CCCCCCHHHHHHHHHHHHhhhc-----CCcEEEEEecCcchh
Q psy1506 9 LCFEAVYKNADIYLLDD----------PLSAVDMHVGKHLFEDCISGFL-----KDKTRILVTHQLQYL 62 (85)
Q Consensus 9 ~laral~~~p~illlDE----------P~~~LD~~~~~~i~~~~~~~~~-----~~~tvi~vtH~~~~~ 62 (85)
.+..|....|.++++|| +.++.|....+.+. .++.... .+..+|++||+++.+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~-~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILL-ELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHH-HHHHHhhccCCCCCEEEEEecCCchhC
Confidence 34556668899999999 34556665444343 3343321 245788899977654
No 497
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=93.06 E-value=0.21 Score=37.68 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=33.1
Q ss_pred hcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506 15 YKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFL-KDKTRILVTHQLQY 61 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~ 61 (85)
-..|.++++||+..-++ +...+ .+..+.+..+ .|..++++||++..
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~-~i~~~~r~~RK~~~~~~~~TQ~~~d 674 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAA-KIRDWLKTLRKANGIVVLATQSIND 674 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45788999999998886 54444 4445555444 58899999998764
No 498
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.73 E-value=0.51 Score=33.89 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHhcCCCEEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 11 FEAVYKNADIYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 11 aral~~~p~illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
.+.-+.++++|++||.- -+.+....+.++..+-.....++.+|++++..
T Consensus 200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 44456889999999994 34456656666654333344567788888754
No 499
>PRK04296 thymidine kinase; Provisional
Probab=92.69 E-value=1.6 Score=27.51 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=34.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC---------c--chhhhCCeEEEEcC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ---------L--QYLNHVDQIVFLNN 73 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~---------~--~~~~~~d~v~~l~~ 73 (85)
+++++++||. .-++.+ .+.+ +++. ...|.+++++.++ . ..+..+|.|..|+.
T Consensus 78 ~~dvviIDEa-q~l~~~---~v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 78 KIDCVLIDEA-QFLDKE---QVVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred CCCEEEEEcc-ccCCHH---HHHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 7899999999 335543 2332 3333 3468899999888 2 22356899988864
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.30 E-value=0.45 Score=30.51 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=33.7
Q ss_pred CCCEEEEecCCCCC--CHHHHHHHHHHHHhhh-cCCcEEEEEecCcc--------hhhh-CCeEEEEc
Q psy1506 17 NADIYLLDDPLSAV--DMHVGKHLFEDCISGF-LKDKTRILVTHQLQ--------YLNH-VDQIVFLN 72 (85)
Q Consensus 17 ~p~illlDEP~~~L--D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~--------~~~~-~d~v~~l~ 72 (85)
+|+.+++|.++.-+ ++...+.+...+.... ..+.|+++++|... .+.+ ||.++.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57788888887653 3332333333333333 35899999999532 1233 68888776
Done!