Query psy1506
Match_columns 85
No_of_seqs 226 out of 1675
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:24:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 9E-30 3.1E-34 164.8 8.2 84 1-84 147-232 (235)
2 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-29 4E-34 167.7 8.2 84 1-84 145-231 (275)
3 3nh6_A ATP-binding cassette SU 100.0 1.7E-29 5.9E-34 169.0 7.4 83 1-84 192-275 (306)
4 3tui_C Methionine import ATP-b 100.0 2.1E-29 7.2E-34 171.9 7.1 84 1-84 165-251 (366)
5 1g6h_A High-affinity branched- 100.0 8.1E-29 2.8E-33 162.0 8.7 83 1-83 155-239 (257)
6 1b0u_A Histidine permease; ABC 100.0 5.5E-29 1.9E-33 163.3 7.8 84 1-84 155-240 (262)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 6.2E-29 2.1E-33 169.3 7.6 84 1-84 140-226 (359)
8 2zu0_C Probable ATP-dependent 100.0 1.6E-28 5.4E-33 161.5 9.3 84 1-84 166-252 (267)
9 2olj_A Amino acid ABC transpor 100.0 9.7E-29 3.3E-33 162.4 8.2 84 1-84 161-246 (263)
10 2ff7_A Alpha-hemolysin translo 100.0 1.2E-28 4E-33 160.6 8.4 83 1-84 147-230 (247)
11 1ji0_A ABC transporter; ATP bi 100.0 9.5E-29 3.2E-33 160.3 7.7 83 1-83 141-225 (240)
12 3rlf_A Maltose/maltodextrin im 100.0 7.5E-29 2.6E-33 169.9 6.9 84 1-84 135-221 (381)
13 2pcj_A ABC transporter, lipopr 100.0 1.9E-28 6.6E-33 157.5 8.4 78 1-78 142-219 (224)
14 2cbz_A Multidrug resistance-as 100.0 1.3E-28 4.6E-33 159.4 7.7 84 1-84 129-215 (237)
15 2ixe_A Antigen peptide transpo 100.0 1.7E-28 5.9E-33 161.6 8.3 84 1-84 158-243 (271)
16 2pze_A Cystic fibrosis transme 100.0 8.5E-29 2.9E-33 159.6 6.6 84 1-84 132-216 (229)
17 1vpl_A ABC transporter, ATP-bi 100.0 2E-28 6.9E-33 160.3 8.1 84 1-84 148-233 (256)
18 4g1u_C Hemin import ATP-bindin 100.0 1.1E-28 3.7E-33 162.3 6.8 84 1-84 143-235 (266)
19 2ghi_A Transport protein; mult 100.0 3.1E-28 1.1E-32 159.5 8.6 83 1-84 157-240 (260)
20 2d2e_A SUFC protein; ABC-ATPas 100.0 4.4E-28 1.5E-32 158.0 9.1 82 1-82 145-229 (250)
21 2yz2_A Putative ABC transporte 100.0 3.1E-28 1.1E-32 159.9 8.3 84 1-84 140-225 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 1.2E-28 4E-33 160.1 6.1 84 1-84 128-214 (240)
23 1mv5_A LMRA, multidrug resista 99.9 1.2E-28 4.1E-33 160.0 5.6 83 1-84 141-224 (243)
24 1v43_A Sugar-binding transport 99.9 4.2E-28 1.5E-32 165.8 8.3 84 1-84 143-229 (372)
25 1z47_A CYSA, putative ABC-tran 99.9 2.6E-28 9E-33 166.0 6.9 84 1-84 147-233 (355)
26 1oxx_K GLCV, glucose, ABC tran 99.9 2.5E-28 8.5E-33 166.0 6.8 84 1-84 142-228 (353)
27 2ihy_A ABC transporter, ATP-bi 99.9 2.7E-28 9.2E-33 161.4 6.6 84 1-84 163-250 (279)
28 2yyz_A Sugar ABC transporter, 99.9 3.2E-28 1.1E-32 165.8 7.1 84 1-84 135-221 (359)
29 2nq2_C Hypothetical ABC transp 99.9 5E-28 1.7E-32 158.1 7.7 83 1-84 130-215 (253)
30 3d31_A Sulfate/molybdate ABC t 99.9 2.8E-28 9.7E-33 165.5 6.6 84 1-84 129-215 (348)
31 1g29_1 MALK, maltose transport 99.9 3.8E-28 1.3E-32 166.0 7.1 84 1-84 141-227 (372)
32 3qf4_A ABC transporter, ATP-bi 99.9 4.8E-28 1.7E-32 172.6 7.9 83 1-84 481-564 (587)
33 2it1_A 362AA long hypothetical 99.9 2.7E-28 9.1E-33 166.3 6.0 84 1-84 135-221 (362)
34 4a82_A Cystic fibrosis transme 99.9 7.7E-28 2.6E-32 171.2 8.0 83 1-84 479-562 (578)
35 3qf4_B Uncharacterized ABC tra 99.9 8.3E-28 2.8E-32 171.6 7.5 83 1-84 493-576 (598)
36 2qi9_C Vitamin B12 import ATP- 99.9 8.6E-28 3E-32 156.8 6.8 84 1-84 128-220 (249)
37 3gd7_A Fusion complex of cysti 99.9 4.5E-28 1.5E-32 166.5 5.3 83 1-84 157-240 (390)
38 4f4c_A Multidrug resistance pr 99.9 7.6E-28 2.6E-32 183.0 7.0 84 1-85 1219-1303(1321)
39 2bbs_A Cystic fibrosis transme 99.9 9.2E-28 3.1E-32 159.6 6.6 84 1-84 161-245 (290)
40 2yl4_A ATP-binding cassette SU 99.9 2.8E-27 9.5E-32 168.7 9.2 83 1-84 485-568 (595)
41 3b5x_A Lipid A export ATP-bind 99.9 2.1E-27 7.1E-32 169.0 8.1 83 1-84 482-565 (582)
42 3b60_A Lipid A export ATP-bind 99.9 2.8E-27 9.7E-32 168.4 8.5 83 1-84 482-565 (582)
43 2pjz_A Hypothetical protein ST 99.9 1E-26 3.6E-31 152.7 8.5 81 1-84 130-213 (263)
44 4f4c_A Multidrug resistance pr 99.9 4E-27 1.4E-31 179.0 6.8 83 1-84 556-639 (1321)
45 3g5u_A MCG1178, multidrug resi 99.9 5.7E-26 1.9E-30 172.4 6.9 83 1-84 1173-1256(1284)
46 3ux8_A Excinuclease ABC, A sub 99.9 1.2E-25 4.2E-30 161.9 8.3 84 1-84 545-638 (670)
47 3ux8_A Excinuclease ABC, A sub 99.9 1.4E-25 4.9E-30 161.5 7.7 84 1-84 204-296 (670)
48 3g5u_A MCG1178, multidrug resi 99.9 7.9E-26 2.7E-30 171.6 6.5 83 1-84 528-611 (1284)
49 3j16_B RLI1P; ribosome recycli 99.9 2.3E-25 7.7E-30 159.8 5.9 84 1-84 469-557 (608)
50 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.5E-24 8.7E-29 146.4 9.3 77 1-77 281-363 (365)
51 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 5.2E-24 1.8E-28 129.9 9.5 72 1-72 59-136 (148)
52 3pih_A Uvrabc system protein A 99.9 1.3E-24 4.5E-29 161.0 7.9 84 1-84 807-900 (916)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 1.9E-24 6.3E-29 153.2 6.9 84 1-84 403-491 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-24 7.8E-29 152.8 6.5 74 1-74 387-462 (538)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 3.2E-24 1.1E-28 151.9 7.2 74 1-74 160-234 (538)
56 1sgw_A Putative ABC transporte 99.9 4.7E-25 1.6E-29 141.3 2.5 75 1-76 135-210 (214)
57 3bk7_A ABC transporter ATP-bin 99.9 4.2E-24 1.4E-28 153.1 7.6 84 1-84 473-561 (607)
58 3bk7_A ABC transporter ATP-bin 99.9 6.4E-24 2.2E-28 152.2 7.8 74 1-74 230-304 (607)
59 3ozx_A RNAse L inhibitor; ATP 99.9 9.8E-24 3.3E-28 149.6 7.2 74 1-75 140-214 (538)
60 3j16_B RLI1P; ribosome recycli 99.9 1.5E-23 5.2E-28 150.3 8.2 75 1-75 223-298 (608)
61 3pih_A Uvrabc system protein A 99.9 1.5E-23 5.2E-28 155.4 8.2 84 1-84 466-558 (916)
62 2iw3_A Elongation factor 3A; a 99.9 3.6E-23 1.2E-27 154.1 8.6 80 1-83 550-632 (986)
63 2vf7_A UVRA2, excinuclease ABC 99.9 3.2E-23 1.1E-27 152.7 6.8 84 1-84 732-825 (842)
64 4aby_A DNA repair protein RECN 99.9 1E-22 3.5E-27 139.0 8.7 76 1-77 297-378 (415)
65 2r6f_A Excinuclease ABC subuni 99.9 1.2E-22 4E-27 151.0 9.0 84 1-84 506-598 (972)
66 2r6f_A Excinuclease ABC subuni 99.9 6.5E-23 2.2E-27 152.3 7.5 84 1-84 847-940 (972)
67 2ygr_A Uvrabc system protein A 99.9 1.1E-22 3.9E-27 151.4 7.8 84 1-84 865-958 (993)
68 2ygr_A Uvrabc system protein A 99.9 2.1E-22 7.1E-27 149.9 7.7 84 1-84 523-615 (993)
69 2vf7_A UVRA2, excinuclease ABC 99.9 3.9E-22 1.3E-26 147.0 8.5 84 1-84 381-473 (842)
70 2iw3_A Elongation factor 3A; a 99.9 2.1E-22 7.1E-27 150.0 6.6 75 1-78 903-978 (986)
71 4ad8_A DNA repair protein RECN 99.8 2.3E-21 7.9E-26 136.4 8.2 73 1-74 399-473 (517)
72 1e69_A Chromosome segregation 99.8 2.7E-20 9.2E-25 124.4 9.5 75 1-76 221-301 (322)
73 3qkt_A DNA double-strand break 99.8 1.9E-20 6.5E-25 126.0 8.8 72 1-72 250-327 (339)
74 3kta_B Chromosome segregation 99.8 4.5E-20 1.5E-24 114.9 8.4 74 1-75 66-145 (173)
75 2o5v_A DNA replication and rep 99.8 8E-20 2.7E-24 124.4 8.0 78 1-84 267-354 (359)
76 4gp7_A Metallophosphoesterase; 99.8 1.5E-20 5E-25 116.0 -1.4 67 1-67 85-167 (171)
77 3auy_A DNA double-strand break 99.7 6.1E-18 2.1E-22 114.9 8.9 72 1-73 282-360 (371)
78 1w1w_A Structural maintenance 99.7 4.1E-18 1.4E-22 117.4 8.2 72 1-72 335-410 (430)
79 2npi_A Protein CLP1; CLP1-PCF1 99.7 6.4E-19 2.2E-23 123.1 0.2 79 1-83 237-335 (460)
80 3b85_A Phosphate starvation-in 99.7 4.8E-18 1.6E-22 108.2 0.3 56 3-64 108-163 (208)
81 1ye8_A Protein THEP1, hypothet 99.6 1.2E-16 4.3E-21 99.4 5.1 64 1-67 78-152 (178)
82 1tf7_A KAIC; homohexamer, hexa 99.5 4.9E-15 1.7E-19 104.4 4.5 74 1-75 355-444 (525)
83 3thx_A DNA mismatch repair pro 99.5 9.1E-15 3.1E-19 109.0 4.8 83 1-83 723-810 (934)
84 2pt7_A CAG-ALFA; ATPase, prote 99.4 6.2E-14 2.1E-18 94.3 1.2 66 2-75 225-291 (330)
85 3thx_B DNA mismatch repair pro 99.3 1.6E-12 5.6E-17 96.9 5.2 63 1-64 737-801 (918)
86 2o8b_B DNA mismatch repair pro 99.2 2.2E-11 7.7E-16 91.6 7.3 74 3-77 854-930 (1022)
87 1cr0_A DNA primase/helicase; R 99.2 3.2E-11 1.1E-15 79.1 7.2 71 5-76 136-237 (296)
88 1tq4_A IIGP1, interferon-induc 99.2 6.5E-13 2.2E-17 91.9 -1.2 68 1-68 156-247 (413)
89 2v9p_A Replication protein E1; 99.2 8.8E-14 3E-18 93.0 -6.3 61 1-83 202-263 (305)
90 2w0m_A SSO2452; RECA, SSPF, un 99.1 7.5E-11 2.5E-15 73.9 5.8 72 3-74 107-192 (235)
91 2ehv_A Hypothetical protein PH 99.1 5.3E-11 1.8E-15 75.5 3.5 58 15-73 133-207 (251)
92 1ewq_A DNA mismatch repair pro 99.1 6.7E-11 2.3E-15 86.9 3.9 61 1-64 637-703 (765)
93 1wb9_A DNA mismatch repair pro 99.0 1E-10 3.4E-15 86.3 2.7 71 5-75 674-746 (800)
94 2cvh_A DNA repair and recombin 99.0 1.2E-09 4E-14 68.2 6.8 69 5-73 92-184 (220)
95 2eyu_A Twitching motility prot 99.0 1.6E-10 5.4E-15 75.5 2.8 60 6-72 87-146 (261)
96 4a74_A DNA repair and recombin 98.9 7.1E-10 2.4E-14 69.5 3.8 68 7-74 108-200 (231)
97 3b9q_A Chloroplast SRP recepto 98.9 1.2E-09 4.2E-14 72.7 4.4 66 5-76 207-284 (302)
98 3jvv_A Twitching mobility prot 98.9 6.7E-10 2.3E-14 75.5 2.1 59 9-74 188-246 (356)
99 1nlf_A Regulatory protein REPA 98.9 1.9E-09 6.4E-14 70.3 4.0 58 1-61 120-183 (279)
100 1znw_A Guanylate kinase, GMP k 98.8 1.1E-11 3.7E-16 77.9 -6.7 61 13-73 137-203 (207)
101 2og2_A Putative signal recogni 98.8 4.9E-09 1.7E-13 71.4 5.5 66 5-76 264-341 (359)
102 1tf7_A KAIC; homohexamer, hexa 98.8 1.2E-08 4E-13 72.0 7.4 65 10-74 130-210 (525)
103 3sop_A Neuronal-specific septi 98.7 1.5E-09 5.2E-14 71.2 0.8 54 1-62 100-153 (270)
104 2dpy_A FLII, flagellum-specifi 98.7 4.9E-10 1.7E-14 77.9 -3.1 72 1-83 260-341 (438)
105 1pzn_A RAD51, DNA repair and r 98.7 1.5E-08 5E-13 68.5 4.1 58 3-60 210-287 (349)
106 1z6g_A Guanylate kinase; struc 98.6 5.3E-11 1.8E-15 75.6 -9.2 61 1-61 124-196 (218)
107 2obl_A ESCN; ATPase, hydrolase 98.6 2E-09 6.7E-14 72.9 -2.3 71 1-83 173-252 (347)
108 3aez_A Pantothenate kinase; tr 98.5 2.8E-09 9.6E-14 71.2 -3.3 32 1-32 178-209 (312)
109 2i3b_A HCR-ntpase, human cance 98.5 1.4E-09 4.7E-14 68.1 -4.7 54 2-59 86-149 (189)
110 1pui_A ENGB, probable GTP-bind 98.4 6.3E-08 2.2E-12 59.8 1.7 49 1-49 151-200 (210)
111 3ec2_A DNA replication protein 98.4 1.1E-06 3.7E-11 53.5 6.8 47 13-59 96-143 (180)
112 2qnr_A Septin-2, protein NEDD5 98.3 1E-07 3.5E-12 63.2 0.7 53 1-60 115-168 (301)
113 1n0w_A DNA repair protein RAD5 98.2 2.9E-06 9.9E-11 53.3 6.0 59 16-74 118-209 (243)
114 2ewv_A Twitching motility prot 98.1 8.9E-07 3E-11 60.3 1.9 56 7-69 199-254 (372)
115 1sxj_E Activator 1 40 kDa subu 98.1 7E-06 2.4E-10 54.4 5.7 45 15-61 132-176 (354)
116 3szr_A Interferon-induced GTP- 98.1 1.3E-05 4.4E-10 57.7 7.3 68 15-82 144-233 (608)
117 2kjq_A DNAA-related protein; s 98.1 5.3E-06 1.8E-10 49.7 4.4 44 14-58 80-124 (149)
118 2qag_C Septin-7; cell cycle, c 98.0 1.4E-06 4.8E-11 60.3 1.2 53 3-60 122-178 (418)
119 3asz_A Uridine kinase; cytidin 98.0 1.8E-09 6.3E-14 67.3 -12.6 56 4-59 98-161 (211)
120 1rj9_A FTSY, signal recognitio 97.9 5.3E-06 1.8E-10 55.2 2.7 51 3-60 206-259 (304)
121 2bdt_A BH3686; alpha-beta prot 97.9 4.7E-08 1.6E-12 60.0 -7.3 75 2-82 97-180 (189)
122 2jeo_A Uridine-cytidine kinase 97.8 1.8E-06 6.1E-11 55.2 -0.9 48 1-59 118-165 (245)
123 1lw7_A Transcriptional regulat 97.7 1.8E-06 6.1E-11 58.3 -1.8 69 3-71 262-341 (365)
124 3lda_A DNA repair protein RAD5 97.7 3.9E-05 1.3E-09 52.8 4.8 59 16-74 272-363 (400)
125 1odf_A YGR205W, hypothetical 3 97.7 7.1E-07 2.4E-11 59.0 -4.3 31 1-33 136-168 (290)
126 2dr3_A UPF0273 protein PH0284; 97.6 0.00056 1.9E-08 42.7 7.9 58 16-73 127-196 (247)
127 2xau_A PRE-mRNA-splicing facto 97.3 6.3E-05 2.2E-09 55.4 1.8 65 2-66 193-260 (773)
128 2f1r_A Molybdopterin-guanine d 97.2 4.5E-06 1.5E-10 51.3 -4.8 49 1-49 105-163 (171)
129 1nij_A Hypothetical protein YJ 97.1 1.8E-05 6.2E-10 52.6 -2.8 48 1-60 143-190 (318)
130 1s96_A Guanylate kinase, GMP k 97.1 0.00086 2.9E-08 42.4 5.1 45 11-64 101-145 (219)
131 1udx_A The GTP-binding protein 97.0 0.00024 8.2E-09 49.2 1.5 52 1-57 254-306 (416)
132 2zr9_A Protein RECA, recombina 96.9 0.0051 1.7E-07 41.5 7.7 70 6-75 126-231 (349)
133 1ls1_A Signal recognition part 96.9 0.0052 1.8E-07 40.4 7.4 51 5-56 168-219 (295)
134 2r6a_A DNAB helicase, replicat 96.9 0.0039 1.3E-07 43.1 7.0 68 8-75 302-400 (454)
135 2bbw_A Adenylate kinase 4, AK4 96.8 9.4E-05 3.2E-09 47.0 -1.6 31 12-42 158-193 (246)
136 2ce7_A Cell division protein F 96.8 0.0023 8E-08 44.9 5.3 58 3-61 94-166 (476)
137 1lw7_A Transcriptional regulat 96.5 0.00094 3.2E-08 44.9 1.8 27 1-27 298-329 (365)
138 1zp6_A Hypothetical protein AT 96.5 0.00076 2.6E-08 40.8 1.2 33 1-41 111-143 (191)
139 2ius_A DNA translocase FTSK; n 96.3 0.0006 2E-08 48.4 -0.2 50 11-60 290-343 (512)
140 1vma_A Cell division protein F 96.0 0.052 1.8E-06 36.0 8.0 28 1-28 167-197 (306)
141 1oix_A RAS-related protein RAB 96.0 0.0063 2.1E-07 36.9 3.4 36 7-44 153-188 (191)
142 3euj_A Chromosome partition pr 95.8 0.026 9E-07 39.8 6.3 67 1-72 381-464 (483)
143 2z4s_A Chromosomal replication 95.6 0.034 1.2E-06 38.4 6.0 43 17-59 194-237 (440)
144 2eyu_A Twitching motility prot 95.3 2.5E-06 8.6E-11 55.5 -14.5 57 1-59 174-240 (261)
145 2qag_B Septin-6, protein NEDD5 95.3 0.011 3.6E-07 41.2 2.8 51 8-58 167-218 (427)
146 2px0_A Flagellar biosynthesis 95.3 0.014 4.9E-07 38.4 3.3 52 14-68 179-236 (296)
147 2e87_A Hypothetical protein PH 95.3 0.019 6.6E-07 38.4 4.0 54 4-59 236-292 (357)
148 2ewv_A Twitching motility prot 95.3 3.6E-06 1.2E-10 57.2 -14.4 58 1-60 285-352 (372)
149 1lvg_A Guanylate kinase, GMP k 95.3 7.4E-05 2.5E-09 46.3 -7.4 54 13-73 120-173 (198)
150 1g5t_A COB(I)alamin adenosyltr 95.3 0.038 1.3E-06 34.7 5.0 66 8-74 109-180 (196)
151 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 2.9E-05 1E-09 53.4 -11.2 60 17-78 139-204 (392)
152 2f9l_A RAB11B, member RAS onco 94.5 0.035 1.2E-06 33.6 3.4 36 8-45 130-165 (199)
153 2gza_A Type IV secretion syste 94.3 0.011 3.9E-07 39.8 0.8 65 2-74 237-302 (361)
154 1fnn_A CDC6P, cell division co 94.0 0.073 2.5E-06 35.1 4.3 43 16-60 124-170 (389)
155 3b9p_A CG5977-PA, isoform A; A 93.2 0.23 7.9E-06 31.8 5.5 30 3-32 99-128 (297)
156 3c8u_A Fructokinase; YP_612366 92.9 0.00043 1.5E-08 42.9 -7.5 27 1-27 113-140 (208)
157 4a1f_A DNAB helicase, replicat 91.2 0.16 5.5E-06 34.2 3.0 51 3-57 113-164 (338)
158 3k1j_A LON protease, ATP-depen 90.7 0.2 6.9E-06 35.8 3.3 41 1-42 185-225 (604)
159 1l8q_A Chromosomal replication 90.4 0.69 2.3E-05 30.0 5.5 44 15-58 96-140 (324)
160 4ag6_A VIRB4 ATPase, type IV s 89.5 0.64 2.2E-05 31.2 4.9 46 16-62 261-310 (392)
161 2qm8_A GTPase/ATPase; G protei 89.4 0.11 3.8E-06 34.6 1.1 39 2-44 213-257 (337)
162 3bh0_A DNAB-like replicative h 89.2 2.5 8.6E-05 27.6 7.5 25 3-27 137-161 (315)
163 1njg_A DNA polymerase III subu 89.0 0.85 2.9E-05 27.3 4.8 43 17-61 126-168 (250)
164 2r8r_A Sensor protein; KDPD, P 89.0 0.32 1.1E-05 31.1 2.9 47 11-57 78-125 (228)
165 2oap_1 GSPE-2, type II secreti 88.5 0.00033 1.1E-08 49.6 -12.3 51 1-63 402-454 (511)
166 2w58_A DNAI, primosome compone 88.4 0.32 1.1E-05 29.3 2.6 48 15-62 113-163 (202)
167 2qby_A CDC6 homolog 1, cell di 87.0 0.59 2E-05 30.4 3.4 42 18-60 129-174 (386)
168 3e70_C DPA, signal recognition 86.8 0.61 2.1E-05 31.1 3.3 62 9-76 235-306 (328)
169 2z43_A DNA repair and recombin 86.3 0.53 1.8E-05 30.9 2.9 53 6-58 189-257 (324)
170 2x8a_A Nuclear valosin-contain 85.8 0.013 4.6E-07 37.9 -5.0 40 1-42 139-190 (274)
171 3szr_A Interferon-induced GTP- 85.3 0.9 3.1E-05 32.7 3.8 52 4-57 170-223 (608)
172 2qgz_A Helicase loader, putati 85.1 0.39 1.3E-05 31.5 1.7 44 15-58 212-257 (308)
173 1v5w_A DMC1, meiotic recombina 85.0 1.1 3.7E-05 29.8 3.9 51 8-58 206-273 (343)
174 3bos_A Putative DNA replicatio 83.3 1.1 3.6E-05 27.2 3.1 42 16-58 103-147 (242)
175 1sxj_D Activator 1 41 kDa subu 83.2 1.9 6.5E-05 27.9 4.4 42 17-60 133-174 (353)
176 2b8t_A Thymidine kinase; deoxy 81.1 2.7 9.3E-05 26.4 4.4 51 17-72 89-150 (223)
177 3llm_A ATP-dependent RNA helic 81.0 4.2 0.00015 25.0 5.3 42 14-55 173-215 (235)
178 3h4m_A Proteasome-activating n 80.1 2.6 8.9E-05 26.5 4.2 54 8-62 101-169 (285)
179 1u94_A RECA protein, recombina 79.9 6.7 0.00023 26.3 6.3 25 7-31 129-155 (356)
180 1jjv_A Dephospho-COA kinase; P 79.1 0.46 1.6E-05 28.7 0.3 67 2-72 62-131 (206)
181 2orv_A Thymidine kinase; TP4A 77.9 11 0.00038 24.1 6.6 51 16-72 89-150 (234)
182 1p9r_A General secretion pathw 77.5 0.069 2.4E-06 36.9 -4.1 20 1-22 295-314 (418)
183 2chg_A Replication factor C sm 76.6 6.4 0.00022 23.1 5.0 43 16-60 101-143 (226)
184 3cf0_A Transitional endoplasmi 74.5 14 0.00049 23.6 6.7 21 7-27 98-118 (301)
185 4fcw_A Chaperone protein CLPB; 71.3 7.5 0.00026 24.6 4.6 33 9-42 110-143 (311)
186 1jr3_D DNA polymerase III, del 70.7 13 0.00043 24.2 5.6 46 12-58 71-116 (343)
187 2orw_A Thymidine kinase; TMTK, 70.6 8 0.00027 23.2 4.4 52 17-73 76-138 (184)
188 3d8b_A Fidgetin-like protein 1 70.2 12 0.00043 24.6 5.6 20 7-26 166-185 (357)
189 3hr8_A Protein RECA; alpha and 69.7 22 0.00076 23.9 7.7 25 7-31 127-153 (356)
190 3t34_A Dynamin-related protein 69.5 10 0.00035 25.0 5.0 52 4-57 159-212 (360)
191 1jr3_A DNA polymerase III subu 68.9 9.1 0.00031 24.8 4.7 43 16-60 118-160 (373)
192 3kl4_A SRP54, signal recogniti 67.5 18 0.00061 25.1 6.0 31 9-39 171-204 (433)
193 2qtf_A Protein HFLX, GTP-bindi 65.4 3.2 0.00011 27.9 2.0 39 3-45 308-351 (364)
194 1ne7_A Glucosamine-6-phosphate 62.8 7.6 0.00026 25.2 3.3 32 2-33 204-250 (289)
195 1jcn_A Inosine monophosphate d 62.3 1.3 4.6E-05 31.0 -0.4 58 12-76 28-90 (514)
196 2dy1_A Elongation factor G; tr 61.8 34 0.0012 24.8 6.8 42 15-61 97-138 (665)
197 3co5_A Putative two-component 60.9 20 0.00068 20.2 6.0 40 17-58 75-115 (143)
198 1fs5_A Glucosamine-6-phosphate 60.8 6.7 0.00023 24.9 2.8 32 2-33 204-250 (266)
199 2v1u_A Cell division control p 59.9 4.2 0.00014 26.4 1.7 43 17-59 130-177 (387)
200 3m0z_A Putative aldolase; MCSG 58.7 3.7 0.00013 26.5 1.2 33 9-44 178-210 (249)
201 2zan_A Vacuolar protein sortin 57.9 40 0.0014 23.0 6.4 64 8-71 218-298 (444)
202 3m6y_A 4-hydroxy-2-oxoglutarat 57.7 3.9 0.00013 26.7 1.2 33 9-44 201-233 (275)
203 3n70_A Transport activator; si 57.5 22 0.00075 20.0 4.4 40 17-58 76-115 (145)
204 1xwi_A SKD1 protein; VPS4B, AA 57.4 36 0.0012 22.0 6.1 21 8-28 96-116 (322)
205 1iqp_A RFCS; clamp loader, ext 57.4 24 0.00083 22.2 5.0 43 16-60 109-151 (327)
206 3bt7_A TRNA (uracil-5-)-methyl 57.0 14 0.00048 24.5 3.9 37 17-61 295-331 (369)
207 4b4t_I 26S protease regulatory 56.1 33 0.0011 24.0 5.7 55 7-62 265-334 (437)
208 1a5t_A Delta prime, HOLB; zinc 56.1 18 0.00063 23.5 4.3 43 16-60 107-149 (334)
209 2j9r_A Thymidine kinase; TK1, 55.8 34 0.0012 21.4 5.3 52 17-73 101-163 (214)
210 1zxx_A 6-phosphofructokinase; 55.7 40 0.0014 22.4 5.9 54 1-59 169-224 (319)
211 2qp9_X Vacuolar protein sortin 55.1 29 0.001 22.8 5.2 20 9-28 135-154 (355)
212 1t6n_A Probable ATP-dependent 55.1 8.7 0.0003 23.0 2.5 39 16-54 157-195 (220)
213 3oiz_A Antisigma-factor antago 55.0 21 0.00073 19.0 3.9 42 16-58 42-85 (99)
214 4dgh_A Sulfate permease family 54.8 25 0.00087 19.4 6.3 45 15-60 46-92 (130)
215 1pfk_A Phosphofructokinase; tr 54.6 43 0.0015 22.3 5.9 53 1-59 170-225 (320)
216 1iy2_A ATP-dependent metallopr 54.5 0.13 4.5E-06 32.8 -6.2 25 1-27 171-195 (278)
217 3u61_B DNA polymerase accessor 54.3 24 0.00081 22.5 4.6 43 17-60 105-147 (324)
218 3hu3_A Transitional endoplasmi 54.2 26 0.0009 24.4 5.0 19 8-26 288-306 (489)
219 2q6t_A DNAB replication FORK h 53.2 23 0.0008 24.1 4.6 49 9-57 300-361 (444)
220 2r5f_A Transcriptional regulat 53.0 6.6 0.00023 25.1 1.7 27 2-28 232-259 (264)
221 1xx6_A Thymidine kinase; NESG, 53.0 26 0.00088 21.3 4.4 51 17-72 81-142 (191)
222 2gnp_A Transcriptional regulat 51.6 7.2 0.00025 25.0 1.8 27 2-28 229-256 (266)
223 1jql_B DNA polymerase III, del 51.6 31 0.0011 19.5 4.7 25 14-38 73-97 (140)
224 1xp8_A RECA protein, recombina 51.4 52 0.0018 22.1 8.0 23 8-30 141-165 (366)
225 2qz4_A Paraplegin; AAA+, SPG7, 50.7 40 0.0014 20.5 5.8 21 9-29 90-110 (262)
226 3t15_A Ribulose bisphosphate c 50.2 24 0.00083 22.5 4.1 14 15-28 97-110 (293)
227 4b4t_J 26S protease regulatory 50.1 60 0.002 22.3 6.8 64 7-71 231-316 (405)
228 1sxj_B Activator 1 37 kDa subu 49.8 24 0.00081 22.2 4.0 42 17-60 107-148 (323)
229 4b4t_K 26S protease regulatory 49.4 61 0.0021 22.4 6.2 54 7-61 255-323 (428)
230 4b4t_H 26S protease regulatory 49.2 52 0.0018 23.1 5.9 24 7-30 292-315 (467)
231 4dgf_A Sulfate transporter sul 48.8 34 0.0012 19.1 5.3 43 16-59 50-94 (135)
232 2vhj_A Ntpase P4, P4; non- hyd 48.3 52 0.0018 22.1 5.5 46 11-57 177-234 (331)
233 1ypw_A Transitional endoplasmi 48.0 31 0.0011 25.6 4.8 56 7-62 287-353 (806)
234 4b4t_L 26S protease subunit RP 48.0 66 0.0023 22.3 6.9 55 7-62 264-333 (437)
235 3b6e_A Interferon-induced heli 47.9 33 0.0011 20.1 4.3 28 15-42 160-187 (216)
236 1ixz_A ATP-dependent metallopr 47.8 0.13 4.4E-06 32.3 -6.9 26 1-28 147-172 (254)
237 4b4t_M 26S protease regulatory 47.6 59 0.002 22.5 5.9 55 7-62 264-333 (434)
238 2yhs_A FTSY, cell division pro 47.6 14 0.00046 26.3 2.7 48 5-57 398-447 (503)
239 3ny7_A YCHM protein, sulfate t 47.2 34 0.0012 18.7 5.3 44 16-60 44-88 (118)
240 2w48_A Sorbitol operon regulat 46.8 9.3 0.00032 24.9 1.7 27 2-28 283-310 (315)
241 2rcn_A Probable GTPase ENGC; Y 46.7 5.8 0.0002 26.8 0.7 13 3-15 317-329 (358)
242 2okg_A Central glycolytic gene 46.5 6.8 0.00023 24.9 1.0 27 2-28 221-248 (255)
243 2r2a_A Uncharacterized protein 46.5 7.8 0.00027 23.8 1.3 46 17-62 87-136 (199)
244 2jjq_A Uncharacterized RNA met 46.2 52 0.0018 22.5 5.4 40 17-62 353-392 (425)
245 2gno_A DNA polymerase III, gam 45.0 27 0.00092 22.7 3.7 10 18-27 83-92 (305)
246 1ixk_A Methyltransferase; open 44.5 50 0.0017 21.3 5.0 41 18-58 188-248 (315)
247 3f6c_A Positive transcription 44.1 36 0.0012 18.0 6.7 39 15-57 44-82 (134)
248 2i1q_A DNA repair and recombin 43.6 19 0.00064 23.2 2.8 15 16-30 203-217 (322)
249 2bkx_A Glucosamine-6-phosphate 43.3 41 0.0014 20.7 4.3 28 2-29 198-239 (242)
250 3ajd_A Putative methyltransfer 43.2 23 0.00079 22.3 3.2 41 17-57 156-212 (274)
251 3f2i_A ALR0221 protein; alpha- 42.0 53 0.0018 19.4 4.7 40 18-60 72-113 (172)
252 2r62_A Cell division protease 42.0 10 0.00035 23.5 1.3 22 7-28 93-114 (268)
253 3lxw_A GTPase IMAP family memb 41.7 60 0.0021 20.0 5.9 55 4-59 89-149 (247)
254 3q6v_A Beta-lactamase; metallo 41.7 44 0.0015 19.9 4.2 37 19-58 36-72 (233)
255 2ri0_A Glucosamine-6-phosphate 41.1 49 0.0017 20.3 4.4 15 2-16 191-205 (234)
256 1vec_A ATP-dependent RNA helic 40.6 17 0.00059 21.3 2.2 40 16-56 145-184 (206)
257 3syl_A Protein CBBX; photosynt 40.5 66 0.0022 20.1 5.3 41 17-58 130-178 (309)
258 1d2n_A N-ethylmaleimide-sensit 40.5 47 0.0016 20.5 4.3 17 10-26 117-133 (272)
259 3lxx_A GTPase IMAP family memb 40.4 60 0.0021 19.6 4.8 42 15-57 110-154 (239)
260 1tue_A Replication protein E1; 38.5 28 0.00095 21.9 2.9 14 16-29 102-115 (212)
261 2kln_A Probable sulphate-trans 38.3 51 0.0017 18.1 4.3 42 17-59 47-90 (130)
262 3llo_A Prestin; STAS domain, c 37.6 54 0.0018 18.3 6.3 42 17-59 63-106 (143)
263 4eyb_A Beta-lactamase NDM-1; m 37.3 56 0.0019 20.4 4.3 36 20-58 86-121 (270)
264 3izx_B Capsid protein VP1; cyt 37.3 17 0.00057 28.7 1.9 27 1-30 1048-1074(1333)
265 3eie_A Vacuolar protein sortin 36.7 83 0.0028 20.1 6.9 20 9-28 102-121 (322)
266 3to5_A CHEY homolog; alpha(5)b 36.5 58 0.002 18.3 6.4 42 13-57 53-95 (134)
267 2jk1_A HUPR, hydrogenase trans 36.4 51 0.0017 17.6 5.8 39 15-57 42-80 (139)
268 3cu5_A Two component transcrip 36.4 52 0.0018 17.8 6.1 39 16-58 48-86 (141)
269 1tmy_A CHEY protein, TMY; chem 36.3 46 0.0016 17.1 6.2 39 15-57 45-83 (120)
270 1xti_A Probable ATP-dependent 36.2 27 0.00091 22.6 2.7 41 16-56 151-191 (391)
271 2r25_B Osmosensing histidine p 35.9 52 0.0018 17.6 6.6 39 16-57 51-89 (133)
272 2chq_A Replication factor C sm 35.7 20 0.00067 22.5 1.9 43 16-60 101-143 (319)
273 4e7p_A Response regulator; DNA 35.1 57 0.0019 17.8 6.2 40 15-58 64-103 (150)
274 1dz3_A Stage 0 sporulation pro 34.2 54 0.0018 17.3 7.1 39 16-57 47-85 (130)
275 2qzj_A Two-component response 33.8 58 0.002 17.5 4.9 38 15-57 46-83 (136)
276 3jte_A Response regulator rece 33.7 57 0.002 17.4 6.4 39 16-58 48-86 (143)
277 3bgw_A DNAB-like replicative h 33.7 1.1E+02 0.0039 20.9 7.1 9 49-57 350-358 (444)
278 1ojl_A Transcriptional regulat 33.6 94 0.0032 19.9 6.1 40 17-58 96-146 (304)
279 3b2n_A Uncharacterized protein 33.2 58 0.002 17.3 6.5 39 16-58 48-86 (133)
280 4dcu_A GTP-binding protein ENG 33.2 97 0.0033 21.0 5.2 53 4-60 89-142 (456)
281 3heb_A Response regulator rece 32.4 64 0.0022 17.5 4.6 40 16-58 58-98 (152)
282 2oxc_A Probable ATP-dependent 32.4 14 0.00049 22.4 0.9 41 16-57 165-207 (230)
283 3q9s_A DNA-binding response re 32.1 88 0.003 19.1 4.5 38 15-57 79-116 (249)
284 3iog_A Beta-lactamase; hydrola 32.1 80 0.0027 18.6 4.4 35 20-58 34-69 (227)
285 1x52_A Pelota homolog, CGI-17; 31.9 61 0.0021 18.3 3.5 40 20-60 58-98 (124)
286 3m4x_A NOL1/NOP2/SUN family pr 31.6 56 0.0019 22.7 3.8 16 16-31 174-189 (456)
287 2gxq_A Heat resistant RNA depe 31.5 14 0.00047 21.8 0.6 40 16-56 143-182 (207)
288 3rqi_A Response regulator prot 31.5 70 0.0024 18.3 3.8 40 15-58 49-88 (184)
289 1sxj_C Activator 1 40 kDa subu 31.2 89 0.003 20.1 4.6 43 16-60 109-151 (340)
290 3hdv_A Response regulator; PSI 31.0 63 0.0022 17.1 5.9 38 18-58 53-90 (136)
291 3pxi_A Negative regulator of g 31.0 1.5E+02 0.0053 21.5 6.3 24 17-41 579-602 (758)
292 3lua_A Response regulator rece 30.9 65 0.0022 17.2 3.9 39 16-57 49-89 (140)
293 3eul_A Possible nitrate/nitrit 30.9 68 0.0023 17.4 6.8 40 15-58 59-98 (152)
294 1y9j_A SEC1 family domain cont 30.8 15 0.00051 22.0 0.7 26 4-29 24-61 (159)
295 3grc_A Sensor protein, kinase; 30.7 65 0.0022 17.1 6.5 42 15-59 48-90 (140)
296 1qvr_A CLPB protein; coiled co 30.7 79 0.0027 23.5 4.6 29 11-40 653-682 (854)
297 1srr_A SPO0F, sporulation resp 30.2 62 0.0021 16.8 6.8 40 15-58 45-84 (124)
298 1zgz_A Torcad operon transcrip 30.2 61 0.0021 16.7 7.2 38 16-58 45-82 (122)
299 3kto_A Response regulator rece 30.1 65 0.0022 17.2 3.3 39 16-58 49-89 (136)
300 3eod_A Protein HNR; response r 30.1 64 0.0022 16.9 5.3 38 16-57 50-87 (130)
301 2rjn_A Response regulator rece 30.0 71 0.0024 17.4 6.3 39 16-58 50-88 (154)
302 1e9r_A Conjugal transfer prote 30.0 29 0.001 23.3 2.1 40 18-61 280-320 (437)
303 1qo0_D AMIR; binding protein, 29.9 82 0.0028 18.1 4.6 38 15-57 50-87 (196)
304 3a10_A Response regulator; pho 29.8 61 0.0021 16.5 6.5 38 16-57 44-81 (116)
305 4dad_A Putative pilus assembly 29.6 70 0.0024 17.2 4.6 39 16-58 66-104 (146)
306 1mvo_A PHOP response regulator 29.3 68 0.0023 16.9 7.0 39 15-57 45-83 (136)
307 1p2f_A Response regulator; DRR 29.2 89 0.0031 18.2 5.4 38 16-57 42-79 (220)
308 2ka5_A Putative anti-sigma fac 29.2 75 0.0026 17.4 5.8 43 15-58 49-93 (125)
309 3mm4_A Histidine kinase homolo 29.0 92 0.0031 18.3 7.0 38 17-57 119-159 (206)
310 3n0r_A Response regulator; sig 28.9 75 0.0026 20.2 3.9 42 13-59 201-243 (286)
311 2zay_A Response regulator rece 28.6 74 0.0025 17.1 6.6 40 16-58 51-91 (147)
312 3i42_A Response regulator rece 28.4 69 0.0024 16.7 6.8 40 15-57 45-85 (127)
313 3hdg_A Uncharacterized protein 28.3 72 0.0025 16.9 5.6 40 15-58 49-88 (137)
314 1sqg_A SUN protein, FMU protei 28.3 69 0.0024 21.6 3.8 15 17-31 315-329 (429)
315 3nco_A Endoglucanase fncel5A; 28.0 1.2E+02 0.0041 19.3 4.9 47 9-55 125-177 (320)
316 3hv2_A Response regulator/HD d 28.0 79 0.0027 17.2 6.4 40 15-58 56-95 (153)
317 1wp9_A ATP-dependent RNA helic 27.9 1E+02 0.0036 20.0 4.5 27 15-41 123-149 (494)
318 1k66_A Phytochrome response re 27.8 75 0.0026 16.9 4.8 17 16-32 61-77 (149)
319 2b4a_A BH3024; flavodoxin-like 27.7 75 0.0026 16.9 5.7 37 16-56 59-95 (138)
320 2wji_A Ferrous iron transport 27.3 85 0.0029 17.5 3.6 15 48-62 107-121 (165)
321 3hzh_A Chemotaxis response reg 27.2 84 0.0029 17.3 6.2 37 17-57 83-119 (157)
322 2as0_A Hypothetical protein PH 27.1 75 0.0026 21.1 3.7 42 17-58 289-337 (396)
323 1nns_A L-asparaginase II; amid 27.0 63 0.0022 21.4 3.3 37 25-62 56-92 (326)
324 3r0j_A Possible two component 27.0 1.1E+02 0.0037 18.5 7.0 39 15-57 65-103 (250)
325 1a04_A Nitrate/nitrite respons 26.8 99 0.0034 18.0 6.6 39 15-57 49-87 (215)
326 1dbw_A Transcriptional regulat 26.8 75 0.0026 16.5 6.1 39 16-58 46-84 (126)
327 1s2m_A Putative ATP-dependent 26.7 61 0.0021 21.0 3.2 39 16-55 162-201 (400)
328 3cnb_A DNA-binding response re 26.6 78 0.0027 16.7 7.2 40 16-58 53-93 (143)
329 1wxx_A TT1595, hypothetical pr 26.5 75 0.0026 21.0 3.6 41 17-57 279-326 (382)
330 3eqz_A Response regulator; str 26.4 77 0.0026 16.5 4.5 40 16-59 45-84 (135)
331 1agx_A Glutaminase-asparaginas 26.4 91 0.0031 20.7 4.0 37 26-62 58-95 (331)
332 3crn_A Response regulator rece 26.3 79 0.0027 16.7 6.1 39 15-57 45-83 (132)
333 2qvg_A Two component response 26.1 81 0.0028 16.7 5.8 40 16-58 58-98 (143)
334 3pey_A ATP-dependent RNA helic 26.1 26 0.00089 22.5 1.3 41 16-56 144-184 (395)
335 3snk_A Response regulator CHEY 25.9 74 0.0025 16.8 3.1 38 16-57 58-95 (135)
336 1o7j_A L-asparaginase; atomic 25.8 85 0.0029 20.8 3.8 38 25-62 60-98 (327)
337 3ilh_A Two component response 25.7 82 0.0028 16.7 7.4 40 16-58 59-101 (146)
338 2vo9_A EAD500, L-alanyl-D-glut 25.6 1.1E+02 0.0039 18.3 4.1 30 27-56 30-59 (179)
339 2o0m_A Transcriptional regulat 25.4 33 0.0011 22.6 1.7 27 2-28 308-336 (345)
340 2qby_B CDC6 homolog 3, cell di 25.4 49 0.0017 21.3 2.5 40 19-59 135-174 (384)
341 1qb5_D Protein (heat labIle en 25.3 48 0.0016 17.8 2.0 28 1-29 60-87 (99)
342 1yio_A Response regulatory pro 25.3 1E+02 0.0036 17.7 5.5 38 16-57 47-84 (208)
343 3fht_A ATP-dependent RNA helic 25.2 32 0.0011 22.3 1.6 41 16-56 167-207 (412)
344 3e1s_A Exodeoxyribonuclease V, 25.1 96 0.0033 22.1 4.1 36 17-57 279-314 (574)
345 3lte_A Response regulator; str 24.8 83 0.0028 16.4 6.4 40 15-57 48-88 (132)
346 3cz5_A Two-component response 24.7 92 0.0031 16.9 6.7 39 15-57 49-87 (153)
347 3r7a_A Phosphoglycerate mutase 24.6 85 0.0029 19.0 3.4 12 48-59 173-184 (237)
348 3mca_B Protein DOM34, elongati 24.5 1.6E+02 0.0053 20.0 4.9 40 19-59 310-350 (390)
349 3mbk_A Ubiquitin-associated an 24.5 93 0.0032 19.2 3.7 12 48-59 184-195 (264)
350 1qkk_A DCTD, C4-dicarboxylate 24.4 94 0.0032 16.9 5.7 38 16-57 46-83 (155)
351 1i3c_A Response regulator RCP1 24.3 94 0.0032 16.8 5.1 38 17-57 61-99 (149)
352 2wlt_A L-asparaginase; hydrola 24.2 90 0.0031 20.7 3.7 38 25-62 60-98 (332)
353 3klo_A Transcriptional regulat 24.2 1.2E+02 0.004 17.9 4.0 39 16-57 53-91 (225)
354 3cf2_A TER ATPase, transitiona 24.2 1.1E+02 0.0038 23.0 4.4 56 7-62 287-353 (806)
355 3cg0_A Response regulator rece 24.2 88 0.003 16.5 6.8 38 16-58 53-91 (140)
356 3nhm_A Response regulator; pro 24.0 87 0.003 16.4 6.5 41 15-58 45-86 (133)
357 4a3s_A 6-phosphofructokinase; 24.0 1.6E+02 0.0055 19.4 6.8 53 1-58 169-223 (319)
358 1kgs_A DRRD, DNA binding respo 23.9 1.2E+02 0.0039 17.7 7.0 40 15-58 44-83 (225)
359 3bor_A Human initiation factor 23.7 27 0.00094 21.2 1.0 40 16-56 172-211 (237)
360 3n53_A Response regulator rece 23.5 93 0.0032 16.5 5.0 18 15-32 44-61 (140)
361 1w36_D RECD, exodeoxyribonucle 23.4 1E+02 0.0035 22.0 4.0 36 17-57 262-297 (608)
362 3f6p_A Transcriptional regulat 23.3 88 0.003 16.2 5.7 38 15-57 44-81 (120)
363 3iuy_A Probable ATP-dependent 23.3 25 0.00087 21.1 0.8 41 16-57 166-207 (228)
364 1xhf_A DYE resistance, aerobic 23.2 87 0.003 16.1 7.0 39 15-58 45-83 (123)
365 3t6k_A Response regulator rece 23.0 96 0.0033 16.5 6.9 40 15-57 46-86 (136)
366 1qhf_A Protein (phosphoglycera 23.0 73 0.0025 19.4 2.9 12 48-59 172-183 (240)
367 4goq_A Hypothetical protein; P 22.9 45 0.0015 18.8 1.7 15 9-23 79-93 (110)
368 2j48_A Two-component sensor ki 22.9 83 0.0028 15.7 6.1 40 16-58 44-84 (119)
369 1qde_A EIF4A, translation init 22.9 31 0.0011 20.5 1.1 39 16-55 154-192 (224)
370 3gl9_A Response regulator; bet 22.7 92 0.0032 16.2 5.8 40 15-57 44-84 (122)
371 1we3_A CPN60(groel); chaperoni 22.5 70 0.0024 22.8 3.0 40 15-60 213-253 (543)
372 2a9o_A Response regulator; ess 22.3 89 0.003 15.9 6.2 38 15-57 43-80 (120)
373 1xv5_A AGT, DNA alpha-glucosyl 22.3 1.7E+02 0.0057 19.0 6.5 51 11-62 69-120 (401)
374 3cmw_A Protein RECA, recombina 22.2 3E+02 0.01 22.8 6.7 15 16-30 809-823 (1706)
375 3m6m_D Sensory/regulatory prot 21.9 1.1E+02 0.0036 16.6 7.4 19 15-33 56-74 (143)
376 1k68_A Phytochrome response re 21.6 98 0.0034 16.1 5.2 39 16-57 54-93 (140)
377 3cm8_B Peptide from RNA-direct 21.6 36 0.0012 14.6 0.9 17 14-30 6-22 (30)
378 3k7i_B IHH, HHG-2, indian hedg 21.6 37 0.0013 21.0 1.2 24 16-39 70-93 (187)
379 3zxn_A RSBS, anti-sigma-factor 21.5 1.1E+02 0.0039 16.8 4.8 46 16-61 41-87 (123)
380 3cfy_A Putative LUXO repressor 21.4 1.1E+02 0.0036 16.4 6.2 40 15-58 46-85 (137)
381 3osx_A 60 kDa chaperonin; alph 21.4 83 0.0028 19.7 2.8 42 14-60 36-77 (201)
382 2xvm_A Tellurite resistance pr 21.3 94 0.0032 17.7 3.1 39 18-56 98-136 (199)
383 1a6d_A Thermosome (alpha subun 21.3 95 0.0032 22.0 3.5 47 15-61 231-296 (545)
384 3dtn_A Putative methyltransfer 21.2 1.3E+02 0.0043 17.8 3.7 39 18-56 110-148 (234)
385 2qr3_A Two-component system re 21.2 1E+02 0.0035 16.2 6.0 38 16-57 46-88 (140)
386 2pl1_A Transcriptional regulat 21.1 96 0.0033 15.8 6.7 39 15-57 42-80 (121)
387 3cg4_A Response regulator rece 21.1 1E+02 0.0036 16.2 6.6 40 16-58 50-90 (142)
388 3c3w_A Two component transcrip 21.1 1.4E+02 0.0047 17.6 4.3 39 16-58 46-84 (225)
389 3gt7_A Sensor protein; structu 21.0 1.1E+02 0.0039 16.6 6.5 39 16-57 50-89 (154)
390 2d6f_A Glutamyl-tRNA(Gln) amid 20.9 99 0.0034 21.5 3.4 37 26-62 144-180 (435)
391 1q0u_A Bstdead; DEAD protein, 20.7 31 0.0011 20.5 0.8 39 16-55 149-188 (219)
392 2hig_A 6-phospho-1-fructokinas 20.7 1.9E+02 0.0065 20.5 4.8 54 1-59 272-327 (487)
393 1xp2_A EAD500, PLY500, L-alany 20.5 1.6E+02 0.0054 18.0 4.0 28 28-56 31-59 (179)
394 3dkp_A Probable ATP-dependent 20.4 36 0.0012 20.6 1.1 16 16-31 174-189 (245)
395 1fm0_E Molybdopterin convertin 20.4 59 0.002 19.2 2.0 47 25-71 45-97 (150)
396 3dmg_A Probable ribosomal RNA 20.4 1.2E+02 0.0042 20.2 3.8 41 17-57 298-341 (381)
397 3te6_A Regulatory protein SIR3 20.4 1.9E+02 0.0065 18.9 4.7 41 16-60 131-174 (318)
398 3ugj_A Phosphoribosylformylgly 20.4 2.5E+02 0.0084 22.6 5.7 49 16-71 1046-1099(1303)
399 1zq1_A Glutamyl-tRNA(Gln) amid 20.3 99 0.0034 21.5 3.3 37 26-62 145-181 (438)
400 1y89_A DEVB protein; structura 20.3 44 0.0015 20.8 1.5 15 2-16 192-206 (238)
401 3nwy_A Uridylate kinase; allos 20.1 1.5E+02 0.0053 19.1 4.1 29 28-56 67-95 (281)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=9e-30 Score=164.79 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|+|++||+++....||++++|++|++..
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999999888765544444 899999999998767799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
++++++
T Consensus 227 ~~~~~~ 232 (235)
T 3tif_A 227 EKLRGF 232 (235)
T ss_dssp EECC--
T ss_pred cChhhh
Confidence 666553
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=1.2e-29 Score=167.71 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||||+.+|+++||||||+|||+.+.+.+++.+.+.. .+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 7999999999999999999999999999999999888887654443 3489999999999987 4699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 225 ~g~~~~~ 231 (275)
T 3gfo_A 225 QGNPKEV 231 (275)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 887765
No 3
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=1.7e-29 Score=169.03 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+.+|+++||||||++||+.+...+++.+ ....+++|+|+|||+++.+..||+|++|++|++.. |
T Consensus 192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERG 270 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH-HHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44556789999999999987799999999999985 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 271 ~~~el 275 (306)
T 3nh6_A 271 RHEAL 275 (306)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87764
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=2.1e-29 Score=171.94 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||||+.+|++|||||||++||+.+...+++.+.+... .|.|+|+|||+++.+. .||++++|++|++..
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999999876554443 4899999999999874 699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 245 ~g~~~ev 251 (366)
T 3tui_C 245 QDTVSEV 251 (366)
T ss_dssp CCBHHHH
T ss_pred EcCHHHH
Confidence 877664
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=8.1e-29 Score=161.97 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+|||||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999999988876554444689999999999886 5699999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 235 g~~~~ 239 (257)
T 1g6h_A 235 GRGEE 239 (257)
T ss_dssp EESHH
T ss_pred eCHHH
Confidence 76665
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=5.5e-29 Score=163.28 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999988888765444446899999999999874 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T 1b0u_A 235 GDPEQV 240 (262)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 766553
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=6.2e-29 Score=169.29 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=74.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+...+.+..+ .|.|+|+||||++.+ ..||++++|++|++..
T Consensus 140 SGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 140 SGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999988888766655543 589999999999886 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 220 ~g~~~el 226 (359)
T 3fvq_A 220 TASPHEL 226 (359)
T ss_dssp EECHHHH
T ss_pred EeCHHHH
Confidence 887764
No 8
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.6e-28 Score=161.46 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~ 78 (85)
|+|||||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. . ||++++|++|++..
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988888665443345899999999998875 3 89999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 246 ~g~~~~~ 252 (267)
T 2zu0_C 246 SGDFTLV 252 (267)
T ss_dssp EECTTHH
T ss_pred EcCHHHH
Confidence 776653
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=9.7e-29 Score=162.40 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 789999999999999999999999999999999988888765544446899999999999875 699999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 241 g~~~~~ 246 (263)
T 2olj_A 241 GKPEDL 246 (263)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 766553
No 10
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=1.2e-28 Score=160.58 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+.+|+++||||||++||+.+.+.+++.+.+. .+|.|+|++||+++.+..||++++|++|++.. |
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999988888765443 56899999999998877799999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 226 ~~~~l 230 (247)
T 2ff7_A 226 KHKEL 230 (247)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66553
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=9.5e-29 Score=160.32 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus 141 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999998888876544434689999999999876 5799999999999875
Q ss_pred Ccccc
Q psy1506 79 GWVEE 83 (85)
Q Consensus 79 g~~~~ 83 (85)
|++++
T Consensus 221 g~~~~ 225 (240)
T 1ji0_A 221 GKASE 225 (240)
T ss_dssp EEHHH
T ss_pred cCHHH
Confidence 66554
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=7.5e-29 Score=169.94 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..+..++..+.+...+ |.|+|+||||++++ ..||++++|++|++..
T Consensus 135 SGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999888888766554444 89999999999876 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 215 ~g~~~~l 221 (381)
T 3rlf_A 215 VGKPLEL 221 (381)
T ss_dssp EECHHHH
T ss_pred EeCHHHH
Confidence 877764
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=1.9e-28 Score=157.53 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+..||++++|++|++..
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 789999999999999999999999999999999988888765544446899999999998776799999999998865
No 14
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=159.43 Aligned_cols=84 Identities=52% Similarity=0.812 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH--hhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~--~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+. ....++.|+|++||+++.+..||++++|++|++..
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 7899999999999999999999999999999998888876543 23345889999999998877799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 209 ~g~~~~~ 215 (237)
T 2cbz_A 209 MGSYQEL 215 (237)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 776653
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.7e-28 Score=161.62 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+... +|.|+|++||+++.+..||++++|++|++..
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 78999999999999999999999999999999998888766544333 3899999999998876799999999999875
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 238 g~~~~l 243 (271)
T 2ixe_A 238 GTHLQL 243 (271)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 766553
No 16
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=8.5e-29 Score=159.62 Aligned_cols=84 Identities=37% Similarity=0.613 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+.+|+++||||||++||+.+.+.+++.++....++.|+|++||+++.+..||++++|++|++.. |
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 211 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887643333445789999999998876799999999998875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 212 ~~~~~ 216 (229)
T 2pze_A 212 TFSEL 216 (229)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66543
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2e-28 Score=160.33 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999988888765544446899999999999875 599999999999874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 228 g~~~~~ 233 (256)
T 1vpl_A 228 GTVEEL 233 (256)
T ss_dssp EEHHHH
T ss_pred cCHHHH
Confidence 665543
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=1.1e-28 Score=162.27 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhc------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYK------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~ 72 (85)
|+||+||++|||||+. +|+++||||||+|||+..+..+++.+.+...+ +.|+|++||+++.+. .||++++|+
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~ 222 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 7899999999999999 99999999999999999988888765444444 579999999999874 699999999
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 223 ~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 223 QGKLVACGTPEEV 235 (266)
T ss_dssp TTEEEEEECHHHH
T ss_pred CCEEEEEcCHHHH
Confidence 999875 877765
No 19
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=3.1e-28 Score=159.53 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+ ....++.|+|++||+++.+..||++++|++|++.. |
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l-~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAV-EDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44455889999999998877799999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 236 ~~~~l 240 (260)
T 2ghi_A 236 THKDL 240 (260)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76553
No 20
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=4.4e-28 Score=157.98 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+. . ||++++|++|++..
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765444345899999999998875 4 59999999999875
Q ss_pred -Cccc
Q psy1506 79 -GWVE 82 (85)
Q Consensus 79 -g~~~ 82 (85)
|+++
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 6554
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=3.1e-28 Score=159.91 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS- 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~- 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+. .||++++|++|++..
T Consensus 140 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 789999999999999999999999999999999988888765544446899999999999875 599999999998874
Q ss_pred Cccccc
Q psy1506 79 GWVEEI 84 (85)
Q Consensus 79 g~~~~~ 84 (85)
|+++++
T Consensus 220 g~~~~~ 225 (266)
T 2yz2_A 220 GTRMEF 225 (266)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 665543
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=1.2e-28 Score=160.14 Aligned_cols=84 Identities=26% Similarity=0.270 Sum_probs=72.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus 128 SgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765444333 88999999999876 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 208 ~g~~~~~ 214 (240)
T 2onk_A 208 KGKLKEL 214 (240)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 776653
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=1.2e-28 Score=160.02 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+. .+|.|+|++||+++.+..||++++|++|++.. |
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH-HTTSEEEEECCSHHHHHHCSEEEEEETTEECCCS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 789999999999999999999999999999999988888765444 36899999999998877799999999999875 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 220 ~~~~~ 224 (243)
T 1mv5_A 220 KHNEL 224 (243)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66553
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=4.2e-28 Score=165.80 Aligned_cols=84 Identities=24% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765544444 88999999999886 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 223 ~g~~~~l 229 (372)
T 1v43_A 223 IGSPTEV 229 (372)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 777664
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=2.6e-28 Score=166.02 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||++.+ ..||++++|++|++..
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765544443 89999999999886 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 227 ~g~~~~l 233 (355)
T 1z47_A 227 FGTPEEV 233 (355)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 777654
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=2.5e-28 Score=165.98 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|++|||++.+ ..||++++|++|++..
T Consensus 142 SGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999999888765544343 89999999999886 5699999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 222 ~g~~~~l 228 (353)
T 1oxx_K 222 VGKPEDL 228 (353)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 777654
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=2.7e-28 Score=161.35 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEE--EEEecCcchh-hhCCeEEEEcCceee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR--ILVTHQLQYL-NHVDQIVFLNNVSKT 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tv--i~vtH~~~~~-~~~d~v~~l~~g~i~ 77 (85)
|+|||||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+ |++||+++.+ ..||++++|++|++.
T Consensus 163 SgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 163 STGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 7899999999999999999999999999999999888887654443448899 9999999886 569999999999987
Q ss_pred c-Cccccc
Q psy1506 78 S-GWVEEI 84 (85)
Q Consensus 78 ~-g~~~~~ 84 (85)
. |+++++
T Consensus 243 ~~g~~~~~ 250 (279)
T 2ihy_A 243 QQGAVEDI 250 (279)
T ss_dssp EEEEHHHH
T ss_pred EECCHHHH
Confidence 5 766554
No 28
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=3.2e-28 Score=165.79 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus 135 SgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765544343 88999999999886 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 215 ~g~~~~l 221 (359)
T 2yyz_A 215 YGTPDEV 221 (359)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 777664
No 29
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=5e-28 Score=158.12 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|+ ..
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 789999999999999999999999999999999988888765544445 89999999999987 5799999999998 54
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 209 ~g~~~~~ 215 (253)
T 2nq2_C 209 FGETRNI 215 (253)
T ss_dssp EEEHHHH
T ss_pred cCCHHHH
Confidence 766554
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=2.8e-28 Score=165.48 Aligned_cols=84 Identities=26% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+...+.+... .|.|+|++|||.+.+ ..||++++|++|++..
T Consensus 129 SgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999998888876554434 489999999999876 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 209 ~g~~~~~ 215 (348)
T 3d31_A 209 VGKPEEI 215 (348)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 777654
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=3.8e-28 Score=166.03 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 799999999999999999999999999999999988888765544443 89999999999886 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 221 ~g~~~~l 227 (372)
T 1g29_1 221 VGSPDEV 227 (372)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 777664
No 32
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=4.8e-28 Score=172.63 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL-KRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH-HHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999988887664 44567899999999999888899999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++|+
T Consensus 560 ~~~el 564 (587)
T 3qf4_A 560 THKEL 564 (587)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88765
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.7e-28 Score=166.32 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus 135 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999988888765544343 89999999999876 5799999999999875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 215 ~g~~~~~ 221 (362)
T 2it1_A 215 VGTPDEV 221 (362)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 777664
No 34
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=7.7e-28 Score=171.21 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+. +....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA-LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 78999999999999999999999999999999987777654 455567899999999999988899999999999976 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 558 ~~~el 562 (578)
T 4a82_A 558 THREL 562 (578)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87765
No 35
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=8.3e-28 Score=171.65 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=74.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM-WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH-HHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44457899999999999988899999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 572 ~~~~l 576 (598)
T 3qf4_B 572 KHDEL 576 (598)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88765
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=8.6e-28 Score=156.81 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCC-------EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYKNAD-------IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~-------illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~ 72 (85)
|+||+||++|||||+.+|+ ++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||++++|+
T Consensus 128 SgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~ 207 (249)
T 2qi9_C 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK 207 (249)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 7899999999999999999 9999999999999998888876554444689999999999987 5799999999
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 208 ~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 208 GGKMLASGRREEV 220 (249)
T ss_dssp TTEEEEEEEHHHH
T ss_pred CCEEEEeCCHHHH
Confidence 998874 766554
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.5e-28 Score=166.49 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+..+..+...+ +...++.|+|++||+.+.+..||++++|++|++.. |
T Consensus 157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l-~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL-KQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD 235 (390)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHH-HTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEES
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44556789999999998777799999999999975 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 236 ~~~el 240 (390)
T 3gd7_A 236 SILEL 240 (390)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 88765
No 38
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=7.6e-28 Score=182.95 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+|+|||||||+||+++.+.+.+ .++...+++|+|+|+|+++.+..||+|++|++|++++ |
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~-~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE-ALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHH-HHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHH-HHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence 7899999999999999999999999999999998776654 4566667999999999999999999999999999986 9
Q ss_pred cccccC
Q psy1506 80 WVEEIL 85 (85)
Q Consensus 80 ~~~~~~ 85 (85)
++++++
T Consensus 1298 th~eLl 1303 (1321)
T 4f4c_A 1298 THTQLM 1303 (1321)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998863
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=9.2e-28 Score=159.60 Aligned_cols=84 Identities=37% Similarity=0.613 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.++....++.|+|++||+++.+..||++++|++|++.. |
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g 240 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeC
Confidence 789999999999999999999999999999999888887643333445889999999998877799999999998864 7
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 241 ~~~~l 245 (290)
T 2bbs_A 241 TFSEL 245 (290)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76553
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=2.8e-27 Score=168.74 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL-DRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 789999999999999999999999999999999888887654 44445899999999999887899999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 564 ~~~~l 568 (595)
T 2yl4_A 564 KHEEL 568 (595)
T ss_dssp CSCC-
T ss_pred CHHHH
Confidence 88775
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=2.1e-27 Score=169.03 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=74.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 799999999999999999999999999999999888887654 44456899999999999888899999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 561 ~~~~l 565 (582)
T 3b5x_A 561 RHADL 565 (582)
T ss_pred CHHHH
Confidence 87765
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=2.8e-27 Score=168.35 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG 560 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH-HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 789999999999999999999999999999999888887654 44456899999999999888899999999999875 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 561 ~~~~l 565 (582)
T 3b60_A 561 THSEL 565 (582)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77764
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1e-26 Score=152.72 Aligned_cols=81 Identities=26% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCC-eEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVD-QIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d-~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++++|||||++||+.+++.+.+.+ ....+ |+|++||+++.+ ..|| ++++|++|++..
T Consensus 130 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L-~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI-KEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH-HHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH-HHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 789999999999999999999999999999999888887654 44433 999999999886 5699 999999998875
Q ss_pred -Cccccc
Q psy1506 79 -GWVEEI 84 (85)
Q Consensus 79 -g~~~~~ 84 (85)
|+++++
T Consensus 207 ~g~~~~l 213 (263)
T 2pjz_A 207 PISVSEL 213 (263)
T ss_dssp EEEHHHH
T ss_pred ecCHHHH
Confidence 766654
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=4e-27 Score=179.04 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=74.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|||||||++||||++++|+|+|||||||+||+++...+. ..+....+|+|+|+|||+++.+..||+|++|++|++.+ |
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~-~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ-QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHH-HHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHH-HHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccC
Confidence 799999999999999999999999999999999765554 55666678999999999999999999999999999986 9
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++|+
T Consensus 635 th~eL 639 (1321)
T 4f4c_A 635 DHRAL 639 (1321)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88775
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=5.7e-26 Score=172.43 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|++++|||||++||+.+.+.+.+. +....+|+|+|+|||+++.+..||++++|++|++.+ |
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~-l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA-LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHH-HHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 78999999999999999999999999999999987777655 455667899999999999988899999999999986 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 1252 ~~~~l 1256 (1284)
T 3g5u_A 1252 THQQL 1256 (1284)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88765
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=1.2e-25 Score=161.90 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||++|||||+.+| ++|||||||+|||+.+...+++.+.+...+|.|+|+||||++.+..||++++|
T Consensus 545 SgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~ 624 (670)
T 3ux8_A 545 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 624 (670)
T ss_dssp CHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGG
T ss_pred CHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCC
Confidence 799999999999999887 49999999999999999988876555445689999999999988779999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 625 ~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 625 RGGQIVAVGTPEEV 638 (670)
T ss_dssp GCCEEEEEECHHHH
T ss_pred CCCEEEEecCHHHH
Confidence 8899875 887764
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=1.4e-25 Score=161.54 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+||++|||||+.+|+ +|||||||++||+.....+++.+.+...+|.|+|+||||++.+..||++++| +
T Consensus 204 SGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~ 283 (670)
T 3ux8_A 204 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIH 283 (670)
T ss_dssp CHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEeccccccc
Confidence 7899999999999999998 9999999999999999998876555445689999999999987779999999 7
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.. |+++++
T Consensus 284 ~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 284 GGEVVAAGTPEEV 296 (670)
T ss_dssp CCSEEEEECHHHH
T ss_pred CCEEEEecCHHHH
Confidence 888764 776653
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=7.9e-26 Score=171.65 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+|||||++|||||+++|+++|||||||+||+++.+.+.+ .+....+|+|+|+|||+++.+..||+|++|++|++.+ |
T Consensus 528 SgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA-ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH-HHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 7899999999999999999999999999999997666654 4555567899999999999988899999999999876 8
Q ss_pred ccccc
Q psy1506 80 WVEEI 84 (85)
Q Consensus 80 ~~~~~ 84 (85)
+++++
T Consensus 607 ~~~~l 611 (1284)
T 3g5u_A 607 NHDEL 611 (1284)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77664
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-25 Score=159.75 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN--VSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i 76 (85)
|+||+||++|||||+.+|++|||||||+|||+.+...+++.+.+... .|.|+|+||||++++. .||++++|++ |++
T Consensus 469 SGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~ 548 (608)
T 3j16_B 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548 (608)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeE
Confidence 79999999999999999999999999999999988888766544433 4899999999999874 6999999986 665
Q ss_pred e-cCccccc
Q psy1506 77 T-SGWVEEI 84 (85)
Q Consensus 77 ~-~g~~~~~ 84 (85)
. .|+|+++
T Consensus 549 ~~~g~p~~~ 557 (608)
T 3j16_B 549 AHARAPESL 557 (608)
T ss_dssp EECCCCEEH
T ss_pred EecCChHHH
Confidence 5 4888775
No 50
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=2.5e-24 Score=146.44 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+||+||++|||||+ .+|+++||||||++||+.....++..+.....+|.|+|+|||+++....+|++++|++|
T Consensus 281 SgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G 360 (365)
T 3qf7_A 281 SGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGG 360 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETT
T ss_pred CHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 799999999999999 79999999999999999998888876554445689999999999887779999999999
Q ss_pred eee
Q psy1506 75 SKT 77 (85)
Q Consensus 75 ~i~ 77 (85)
++.
T Consensus 361 ~i~ 363 (365)
T 3qf7_A 361 VVV 363 (365)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 51
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.91 E-value=5.2e-24 Score=129.87 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCchhHHHHH------HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCF------EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~la------ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+||++|| ||++.+|++++|||||++||+...+.+.+.+.....+|.|+|++||+......||++++|+
T Consensus 59 SgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 136 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence 78999999876 8999999999999999999999888887665443345789999999986556799999994
No 52
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.3e-24 Score=161.02 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=74.3
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+|||+|||||+++| ++|||||||+|||+...+.+++.+.+...+|.|+|+|+|+++.+..||++++|
T Consensus 807 SGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~ 886 (916)
T 3pih_A 807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGK 886 (916)
T ss_dssp CHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGG
T ss_pred CHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCC
Confidence 799999999999999875 79999999999999998888876554445689999999999988889999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|+++. |+++++
T Consensus 887 ~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 887 EGGYIVATGTPEEI 900 (916)
T ss_dssp GCCEEEEEESHHHH
T ss_pred CCCEEEEEcCHHHH
Confidence 8898875 988875
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=1.9e-24 Score=153.17 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLNN--VSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+...+++.+.+.. ..|.|+|+||||++++. .||++++|++ |.+
T Consensus 403 SGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~ 482 (538)
T 1yqt_A 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKY 482 (538)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceE
Confidence 7999999999999999999999999999999999888887654433 24889999999999875 6999999985 444
Q ss_pred e-cCccccc
Q psy1506 77 T-SGWVEEI 84 (85)
Q Consensus 77 ~-~g~~~~~ 84 (85)
. .|+++++
T Consensus 483 ~~~g~~~~~ 491 (538)
T 1yqt_A 483 GRALPPMGM 491 (538)
T ss_dssp EEECCCEEH
T ss_pred eecCCHHHH
Confidence 3 4777654
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=2.3e-24 Score=152.80 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g 74 (85)
|+||+||++|||||+.+|++|||||||++||+.++..+++.+.+... .|.|+|+||||++.+. .||++++|+++
T Consensus 387 SGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 79999999999999999999999999999999998888876554443 5889999999999875 69999999864
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=3.2e-24 Score=151.93 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g 74 (85)
|+||+||++|||||+.+|++|||||||++||+...+.+++.+.+...+|.|+|+|||+++++. .||++++|++|
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 789999999999999999999999999999999888888765544446899999999999875 59999999864
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.90 E-value=4.7e-25 Score=141.26 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=61.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i 76 (85)
|+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+.. +|+++++ .|.+
T Consensus 135 SgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 7899999999999999999999999999999999888887654443357899999999988754 6777654 4443
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=4.2e-24 Score=153.15 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLNN--VSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i 76 (85)
|+||+||++|||||+.+|++|||||||++||+..+..+++.+.+.. ..|.|+|+||||++++. .||++++|++ |.+
T Consensus 473 SGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~ 552 (607)
T 3bk7_A 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH 552 (607)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceE
Confidence 7999999999999999999999999999999998888876654433 35889999999999875 6999999985 544
Q ss_pred e-cCccccc
Q psy1506 77 T-SGWVEEI 84 (85)
Q Consensus 77 ~-~g~~~~~ 84 (85)
. .|+++++
T Consensus 553 ~~~g~p~~~ 561 (607)
T 3bk7_A 553 GRALPPMGM 561 (607)
T ss_dssp EEECCCEEH
T ss_pred EecCCHHHH
Confidence 3 4777654
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=6.4e-24 Score=152.21 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g 74 (85)
|+||+||++|||||+.+|++|||||||++||+..+..+++.+.+...+|.|+|+||||++.+. .||++++|+++
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 799999999999999999999999999999999888887765444446899999999999875 59999999865
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=9.8e-24 Score=149.58 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=65.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++|||||+.+|++|||||||++||+.....+++.+ +.+.+|.|+|+|||+++++. .||++++|++|.
T Consensus 140 SgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l-~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 789999999999999999999999999999999888887654 44445899999999999875 599999998653
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-23 Score=150.31 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS 75 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~ 75 (85)
|+||+||++|||||+.+|++|||||||++||+.....+++.+.+...+|.|+|+|||+++++. .+|++++|++|.
T Consensus 223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 789999999999999999999999999999999888887665444456899999999999875 599999998754
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.5e-23 Score=155.41 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+||++|||||+++|+ +|||||||+|||+...+.+++.+.+...+|.|+|+||||++.+..||++++| +
T Consensus 466 SGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~ 545 (916)
T 3pih_A 466 SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTN 545 (916)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccC
Confidence 7999999999999999887 9999999999999999999876554445689999999999888779999999 8
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.+ |+++++
T Consensus 546 ~G~iv~~G~~~e~ 558 (916)
T 3pih_A 546 GGRVVFQGTVDEL 558 (916)
T ss_dssp CSEEEEEECHHHH
T ss_pred CCEEEEeechhhh
Confidence 888875 887664
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=3.6e-23 Score=154.08 Aligned_cols=80 Identities=25% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee--
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-- 77 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-- 77 (85)
|+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+. . .|.|+|++||+++++. .||++++|++|++.
T Consensus 550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~-~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~ 626 (986)
T 2iw3_A 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-T--CGITSITISHDSVFLDNVCEYIINYEGLKLRKY 626 (986)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHH-H--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-h--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecC
Confidence 7999999999999999999999999999999998888876544 3 5889999999999875 69999999999885
Q ss_pred cCcccc
Q psy1506 78 SGWVEE 83 (85)
Q Consensus 78 ~g~~~~ 83 (85)
.|++++
T Consensus 627 ~G~~~e 632 (986)
T 2iw3_A 627 KGNFTE 632 (986)
T ss_dssp ESCHHH
T ss_pred CCCHHH
Confidence 376654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=3.2e-23 Score=152.72 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~---p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||++|||+|+.+ |++|||||||+|||+...+.+++.+.+...+|.|||+|||+++++..||++++|
T Consensus 732 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~ 811 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGE 811 (842)
T ss_dssp CHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGG
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCC
Confidence 78999999999999996 699999999999999998888876554445789999999999988779999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 812 ~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 812 DGGRLVAQGTPAEV 825 (842)
T ss_dssp GCCSEEEEECHHHH
T ss_pred CCCEEEEEcCHHHH
Confidence 6888864 777664
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=1e-22 Score=139.03 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE----cCc
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL----NNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l----~~g 74 (85)
|+||+||++||++|+.+| ++|||||||++||+.....+.+.+ ..+.++.++|+|||+++++..||++++| ++|
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L-~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL-SRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 789999999999999999 999999999999999888887664 4444689999999999888789999999 888
Q ss_pred eee
Q psy1506 75 SKT 77 (85)
Q Consensus 75 ~i~ 77 (85)
++.
T Consensus 376 ~~~ 378 (415)
T 4aby_A 376 RTV 378 (415)
T ss_dssp EEE
T ss_pred ceE
Confidence 764
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=1.2e-22 Score=150.97 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+|||.||++|.++| ++|||||||++||+...+.++..+.+....|.|||+|+|+++++..||++++| +
T Consensus 506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~ 585 (972)
T 2r6f_A 506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIH 585 (972)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCC
Confidence 789999999999999985 89999999999999999988876555445689999999999988789999999 6
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++++ |+++++
T Consensus 586 gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 586 GGEVVAAGTPEEV 598 (972)
T ss_dssp CCSEEEEECTTTT
T ss_pred CCEEEEecCHHHH
Confidence 788775 888765
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=6.5e-23 Score=152.32 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||++|||+|+.+| ++|||||||+|||+...+.+++.+.+...+|.|+|++||+++.+..||++++|
T Consensus 847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~ 926 (972)
T 2r6f_A 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 926 (972)
T ss_dssp CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCC
Confidence 789999999999999875 99999999999999998888876555445789999999999988779999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 927 ~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 927 RGGQIVAVGTPEEV 940 (972)
T ss_dssp SCCSEEEEESHHHH
T ss_pred CCCEEEEecCHHHH
Confidence 6788864 777654
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=1.1e-22 Score=151.36 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506 1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------ 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------ 71 (85)
|+||+||++|||+|+.+| ++|||||||+|||+...+.+++.+.+...+|.|+|++||+++++..||++++|
T Consensus 865 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~ 944 (993)
T 2ygr_A 865 SGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGA 944 (993)
T ss_dssp CHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTT
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCC
Confidence 789999999999999875 99999999999999998888876554445689999999999988779999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 945 ~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 945 GGGTVVAQGTPEDV 958 (993)
T ss_dssp SCSEEEEEECHHHH
T ss_pred CCCEEEEecCHHHH
Confidence 6788865 777654
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=2.1e-22 Score=149.95 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~--p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+|||.||++|..+ |++|||||||++||+...+.++..+.+....|.|+|+|+|+++++..||++++| +
T Consensus 523 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~ 602 (993)
T 2ygr_A 523 SGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEH 602 (993)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccC
Confidence 78999999999999998 589999999999999998988876555445789999999999988889999999 5
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++++ |+++++
T Consensus 603 gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 603 GGRIVHSGPYDEL 615 (993)
T ss_dssp CCSCCEEECHHHH
T ss_pred CCEEEEeeCHHHh
Confidence 787765 776654
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=3.9e-22 Score=146.98 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~ 72 (85)
|+||+|||.||++|..+| ++|||||||++||+...+.+++.+......|.|+|+|+|+++++..||++++| +
T Consensus 381 SGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~ 460 (842)
T 2vf7_A 381 SPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEK 460 (842)
T ss_dssp CHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccC
Confidence 789999999999999999 59999999999999999988876544445689999999999988789999999 6
Q ss_pred Cceeec-Cccccc
Q psy1506 73 NVSKTS-GWVEEI 84 (85)
Q Consensus 73 ~g~i~~-g~~~~~ 84 (85)
+|++.+ |+++++
T Consensus 461 ~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 461 GGEILYSGPPEGL 473 (842)
T ss_dssp CCSEEEEECGGGG
T ss_pred CCEEEEecCHHHH
Confidence 787765 887765
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=2.1e-22 Score=150.03 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS 78 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~ 78 (85)
|+||+||++|||||+.+|++|||||||++||+.+...+.+.+ ..+ +.|+|++||+.+++. .||++++|++|++..
T Consensus 903 SGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L-~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL-KEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH-HSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH-HHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 799999999999999999999999999999999877776543 332 569999999999874 699999999998864
No 71
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=2.3e-21 Score=136.40 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=65.0
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
|+||+||++|||+++.+| +++||||||+|||+.....+...+... .++.+||+|||+++.+..||++++|+++
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~-~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-ADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH-HHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 799999999999999999 999999999999999888888765443 3488999999999887789999999654
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=2.7e-20 Score=124.45 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=63.6
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE--EEEcCc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI--VFLNNV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v--~~l~~g 74 (85)
|+||+||++|||||+ .+|+++||||||++||+...+.+++.+ ....++.++|++||+.+....||++ +++.+|
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEECCHHHHhhCceEEEEEEeCC
Confidence 689999999999997 689999999999999999888887654 4445678999999997767779986 788887
Q ss_pred ee
Q psy1506 75 SK 76 (85)
Q Consensus 75 ~i 76 (85)
..
T Consensus 300 ~s 301 (322)
T 1e69_A 300 VS 301 (322)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=1.9e-20 Score=126.00 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCCchh------HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSS------CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~------~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+| |+++|++++.+|++++|||||++||+.....++..+.....++.++|++||+.+....||++++++
T Consensus 250 S~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 789999 678888889999999999999999999888887765444455789999999977667799999986
No 74
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.82 E-value=4.5e-20 Score=114.94 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc--Cc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN--NV 74 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~--~g 74 (85)
|+|||||++|||+++ .+|++++||||+++||+.+.+.+.+. +....++.++|++||+......||+++.+. +|
T Consensus 66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~-l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g 144 (173)
T 3kta_B 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL-IKESSKESQFIVITLRDVMMANADKIIGVSMRDG 144 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHH-HHHhccCCEEEEEEecHHHHHhCCEEEEEEecCC
Confidence 789999999999997 45799999999999999988888765 444555678999999987778899998654 55
Q ss_pred e
Q psy1506 75 S 75 (85)
Q Consensus 75 ~ 75 (85)
.
T Consensus 145 ~ 145 (173)
T 3kta_B 145 V 145 (173)
T ss_dssp E
T ss_pred E
Confidence 3
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=8e-20 Score=124.42 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=66.4
Q ss_pred CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+||+||++||++|+ .+|+++||||||++||+...+.+++.+ .... .|+|++||. +. .+++++++
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l-~~~~--qt~i~~th~-~~--~~~~i~~l 340 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA-ASVP--QAIVTGTEL-AP--GAALTLRA 340 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH-HHSS--EEEEEESSC-CT--TCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH-HhcC--cEEEEEEec-cc--cCCEEEEE
Confidence 789999999999999 899999999999999999888887654 3332 689999994 44 78999999
Q ss_pred cCceeec-Cccccc
Q psy1506 72 NNVSKTS-GWVEEI 84 (85)
Q Consensus 72 ~~g~i~~-g~~~~~ 84 (85)
++|++.. |+++++
T Consensus 341 ~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 341 QAGRFTPVADEEMQ 354 (359)
T ss_dssp ETTEEEECCCTTTS
T ss_pred ECCEEEecCCHHHH
Confidence 9999875 887764
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.76 E-value=1.5e-20 Score=115.97 Aligned_cols=67 Identities=3% Similarity=-0.116 Sum_probs=53.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHH----------------HHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVG----------------KHLFEDCISGFLKDKTRILVTHQLQYLNH 64 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~----------------~~i~~~~~~~~~~~~tvi~vtH~~~~~~~ 64 (85)
|+||+||+++|||+..+|++++|||||++||+.++ ..+.+.+.....+|.|+|++||+++.+..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 47999999999999999999999999999999843 55554432223458999999999988765
Q ss_pred CCe
Q psy1506 65 VDQ 67 (85)
Q Consensus 65 ~d~ 67 (85)
+++
T Consensus 165 ~~~ 167 (171)
T 4gp7_A 165 VVF 167 (171)
T ss_dssp EEE
T ss_pred hhh
Confidence 443
No 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.75 E-value=6.1e-18 Score=114.89 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=60.6
Q ss_pred CCCchhHH------HHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 1 MTGKSSCQ------LCFEAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 1 ~~g~~~~~------~laral~~~-p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
|+||+||+ ++|+++..+ |+++||||||++||+.....+.+.+ ....++.++|++||+++....+|+++++++
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~~~~~vi~~th~~~~~~~~d~~~~l~k 360 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVKSIPQMIIITHHRELEDVADVIINVKK 360 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCCSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence 78999988 567899999 9999999999999999888887654 444445689999999876567999999973
No 78
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=4.1e-18 Score=117.41 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|+||+|+++||++|+ .+|+++|||||+++||+.....+...+.....++.++|++||+......||+++.+.
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 789999999999999 589999999999999999888887654433334789999999977777899999886
No 79
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.4e-19 Score=123.10 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=63.0
Q ss_pred CCCchhHHHHHHH--HhcCCCE----EEEec-CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc------hh-hhCC
Q psy1506 1 MTGKSSCQLCFEA--VYKNADI----YLLDD-PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ------YL-NHVD 66 (85)
Q Consensus 1 ~~g~~~~~~lara--l~~~p~i----lllDE-P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~------~~-~~~d 66 (85)
|+||+||+++||| |+.+|++ +|||| ||++||+. .+.+. .+++. .+.++++|+|+.+ .+ ..+|
T Consensus 237 SgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~--~~~tviiVth~~~~~l~~~~~~~~~d 312 (460)
T 2npi_A 237 YLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK--LNVNIMLVLCSETDPLWEKVKKTFGP 312 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH--TTCCEEEEECCSSCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHH-HHHHH--hCCCEEEEEccCchhhhHHHHHHhcc
Confidence 5799999999999 9999999 99999 99999997 34333 33333 2678999999887 44 4589
Q ss_pred e-----EEEEc-CceeecCcccc
Q psy1506 67 Q-----IVFLN-NVSKTSGWVEE 83 (85)
Q Consensus 67 ~-----v~~l~-~g~i~~g~~~~ 83 (85)
+ +++|+ +|++..|++++
T Consensus 313 r~~~~~vi~l~k~G~iv~g~~~~ 335 (460)
T 2npi_A 313 ELGNNNIFFIPKLDGVSAVDDVY 335 (460)
T ss_dssp HHCGGGEEEECCCTTCCCCCHHH
T ss_pred cccCCEEEEEeCCCcEEECCHHH
Confidence 9 99999 88877665543
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=4.8e-18 Score=108.18 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH 64 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~ 64 (85)
||+||++|||||+.+|+++||||||++ +...+.+.+ ..+.+|.|+| +||+++.+..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l-~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL-TRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH-TTBCTTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH-HHhcCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 456666554 4445578999 9999876643
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.65 E-value=1.2e-16 Score=99.38 Aligned_cols=64 Identities=3% Similarity=-0.035 Sum_probs=50.3
Q ss_pred CCCchhHHHHHHH-----HhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec---Ccchhh-hCCe
Q psy1506 1 MTGKSSCQLCFEA-----VYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRILVTH---QLQYLN-HVDQ 67 (85)
Q Consensus 1 ~~g~~~~~~lara-----l~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH---~~~~~~-~~d~ 67 (85)
|+||+||+++||| ++.+|++++||| ||+++|+...+.+.+. +.. .+.++|+++| +..++. .+++
T Consensus 78 SgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~-l~~--~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-MHD--PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-HTC--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred CHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH-Hhc--CCCeEEEEEccCCCchHHHHHHhc
Confidence 5799999999996 999999999999 9999999877766544 332 4667888885 666654 3554
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=4.9e-15 Score=104.41 Aligned_cols=74 Identities=14% Similarity=0.022 Sum_probs=62.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHH-----HHHHHHHHHHhhhcCCcEEEEEecCc----------chhh-h
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMH-----VGKHLFEDCISGFLKDKTRILVTHQL----------QYLN-H 64 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~-----~~~~i~~~~~~~~~~~~tvi~vtH~~----------~~~~-~ 64 (85)
|+||+||+.+|+++..+|+++++| ||++||.. .++.+...+......|.|+|+++|+. ..+. .
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~ 433 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI 433 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee
Confidence 679999999999999999999999 99999998 77776654433334689999999998 5554 5
Q ss_pred CCeEEEEcCce
Q psy1506 65 VDQIVFLNNVS 75 (85)
Q Consensus 65 ~d~v~~l~~g~ 75 (85)
||++++|++|+
T Consensus 434 ~D~vi~L~~ge 444 (525)
T 1tf7_A 434 TDTIILLQYVE 444 (525)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEE
Confidence 89999998775
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=9.1e-15 Score=108.99 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=66.2
Q ss_pred CCCchhHHHHHHHH--hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506 1 MTGKSSCQLCFEAV--YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQLQYLNHVDQIVFLNNVSK 76 (85)
Q Consensus 1 ~~g~~~~~~laral--~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~g~i 76 (85)
|||+.++..+|+++ +.+|+++|||||++|+|+.....+...+++... .|.+++++||+.+....++++..+.+|++
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v 802 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHV 802 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEE
Confidence 57778888888888 899999999999999999887777555555543 38899999999877777888888888877
Q ss_pred ec-Ccccc
Q psy1506 77 TS-GWVEE 83 (85)
Q Consensus 77 ~~-g~~~~ 83 (85)
.. ++.++
T Consensus 803 ~~~~~~~~ 810 (934)
T 3thx_A 803 TALTTEET 810 (934)
T ss_dssp EEEEETTE
T ss_pred EEEecCCc
Confidence 54 44443
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.38 E-value=6.2e-14 Score=94.32 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
+||+||+++||||..+|+++++|||++. + +.+ .++.+..| .|+++++|+.+....+||+++|.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS---E----AYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHH-HHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 6999999999999999999999999982 2 222 23334444 47999999998667789999998764
No 85
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.31 E-value=1.6e-12 Score=96.86 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNH 64 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~ 64 (85)
|.||++++.++++ +.+|+++|||||++|+|+.....+...+++.+ . .|.+++++||+.+....
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHH
Confidence 4588999999998 79999999999999999998888875556554 3 48999999999876543
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.22 E-value=2.2e-11 Score=91.59 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cC-CcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKT 77 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~ 77 (85)
|.++++++|++++.+|+++|||||++|+|+.....+...+++.+ .+ |.++|++||+.+... .++++.++ +|++.
T Consensus 854 ~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 854 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 34567999999999999999999999999987555444445544 34 889999999998875 47887776 45554
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.22 E-value=3.2e-11 Score=79.14 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhcCCCEEEEecCCC---C---CCH-HHHHHHHHHHHhhhcC-CcEEEEEecCc--c--------------
Q psy1506 5 SSCQLCFEAVYKNADIYLLDDPLS---A---VDM-HVGKHLFEDCISGFLK-DKTRILVTHQL--Q-------------- 60 (85)
Q Consensus 5 ~~~~~laral~~~p~illlDEP~~---~---LD~-~~~~~i~~~~~~~~~~-~~tvi~vtH~~--~-------------- 60 (85)
+|++. |+++..+|+++++|||++ + +|. .....+...+.....+ +.++|+++|+. +
T Consensus 136 ~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~ 214 (296)
T 1cr0_A 136 LAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT 214 (296)
T ss_dssp HHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------
T ss_pred HHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHH
Confidence 56666 889999999999999999 4 344 3345555544333333 89999999985 3
Q ss_pred ------hh-hhCCeEEEEcCcee
Q psy1506 61 ------YL-NHVDQIVFLNNVSK 76 (85)
Q Consensus 61 ------~~-~~~d~v~~l~~g~i 76 (85)
.+ ..||++++|++|+.
T Consensus 215 dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 215 DLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CCC---CHHHHCSEEEEEEEC--
T ss_pred HhcccHHhHhhCcEEEEEecCcc
Confidence 44 46999999987753
No 88
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.21 E-value=6.5e-13 Score=91.87 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=52.3
Q ss_pred CCC--chhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cC----CcEEEEEecCc
Q psy1506 1 MTG--KSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LK----DKTRILVTHQL 59 (85)
Q Consensus 1 ~~g--~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~----~~tvi~vtH~~ 59 (85)
|+| |+||+.+|+++.. +|++++|||||++||+...+.+.+.+.+.. .. ..++++++|.+
T Consensus 156 S~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l 235 (413)
T 1tq4_A 156 SATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 235 (413)
T ss_dssp ESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCT
T ss_pred CCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcC
Confidence 356 9999999999999 999999999999999998888776654432 12 25677889977
Q ss_pred ch--hh-hCCeE
Q psy1506 60 QY--LN-HVDQI 68 (85)
Q Consensus 60 ~~--~~-~~d~v 68 (85)
.. +. .+|++
T Consensus 236 ~~~~~e~L~d~I 247 (413)
T 1tq4_A 236 CHYDFPVLMDKL 247 (413)
T ss_dssp TSTTHHHHHHHH
T ss_pred CccCHHHHHHHH
Confidence 64 43 35555
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.19 E-value=8.8e-14 Score=93.02 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=48.8
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G 79 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g 79 (85)
|+||||| |||++++|++|| |++||+.+...+. . ++|++..+..+|++ +|++|++.. |
T Consensus 202 SgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~-----~---------ltH~~~~~~~aD~i-vl~~G~iv~~g 259 (305)
T 2v9p_A 202 SIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL-----Y---------LHSRVQTFRFEQPC-TDESGEQPFNI 259 (305)
T ss_dssp ECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG-----G---------GTTTEEEEECCCCC-CCC---CCCCC
T ss_pred CHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH-----H---------HhCCHHHHHhCCEE-EEeCCEEEEeC
Confidence 6899999 999999999999 9999998766543 1 28998888889999 999999875 7
Q ss_pred cccc
Q psy1506 80 WVEE 83 (85)
Q Consensus 80 ~~~~ 83 (85)
++++
T Consensus 260 ~~~e 263 (305)
T 2v9p_A 260 TDAD 263 (305)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.14 E-value=7.5e-11 Score=73.91 Aligned_cols=72 Identities=6% Similarity=-0.098 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHhcCCC--EEEEecCCCCC--CHHHHHHHHHHHHhhhc-CCcEEEEEecCc--------chh-hhCCeE
Q psy1506 3 GKSSCQLCFEAVYKNAD--IYLLDDPLSAV--DMHVGKHLFEDCISGFL-KDKTRILVTHQL--------QYL-NHVDQI 68 (85)
Q Consensus 3 g~~~~~~laral~~~p~--illlDEP~~~L--D~~~~~~i~~~~~~~~~-~~~tvi~vtH~~--------~~~-~~~d~v 68 (85)
++.++...+.+...+|+ ++++|||++.+ |+.....++..+..... .+.++++++|+. ..+ ..||++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~v 186 (235)
T 2w0m_A 107 EELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGI 186 (235)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEE
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEE
Confidence 45555666666667999 99999999888 98777777766554433 488999999998 335 459999
Q ss_pred EEEcCc
Q psy1506 69 VFLNNV 74 (85)
Q Consensus 69 ~~l~~g 74 (85)
++|++.
T Consensus 187 i~l~~~ 192 (235)
T 2w0m_A 187 IRFRRM 192 (235)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999753
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.09 E-value=5.3e-11 Score=75.54 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=41.7
Q ss_pred hcCCCEEEEecCCCCCC-----HHHHHHHHHHHHhhh-cCCcEEEEEecCcchh----------hhC-CeEEEEcC
Q psy1506 15 YKNADIYLLDDPLSAVD-----MHVGKHLFEDCISGF-LKDKTRILVTHQLQYL----------NHV-DQIVFLNN 73 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD-----~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~----------~~~-d~v~~l~~ 73 (85)
..+|+++++|||++++| +...+.+. .++... ..|.|++++||+.... ..| |++++|++
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~-~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLL-KLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHH-HHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHH-HHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 47999999999999997 44333354 444444 3589999999998765 457 99999963
No 92
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.07 E-value=6.7e-11 Score=86.92 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=49.0
Q ss_pred CCCchhHHHHHHHH--hcCCCEEEEecC---CCCCCHHHH-HHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506 1 MTGKSSCQLCFEAV--YKNADIYLLDDP---LSAVDMHVG-KHLFEDCISGFLKDKTRILVTHQLQYLNH 64 (85)
Q Consensus 1 ~~g~~~~~~laral--~~~p~illlDEP---~~~LD~~~~-~~i~~~~~~~~~~~~tvi~vtH~~~~~~~ 64 (85)
|+||++++.+++++ +.+|+++||||| |+++|+... ..+.+.+.. .|.+++++||+.+....
T Consensus 637 S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 637 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTAL 703 (765)
T ss_dssp SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTC
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHh
Confidence 57889999999999 999999999999 999998754 345544332 57899999999876543
No 93
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.01 E-value=1e-10 Score=86.34 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506 5 SSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNHVDQIVFLNNVS 75 (85)
Q Consensus 5 ~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~ 75 (85)
+++++.+...+.+|+++|||||++|+|+.....+...+++.+ . .|.+++++||+.+....++++..+.+|+
T Consensus 674 ~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 674 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746 (800)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence 344555555689999999999999999876666544444443 3 3889999999987655565544444443
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.00 E-value=1.2e-09 Score=68.20 Aligned_cols=69 Identities=7% Similarity=0.013 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhcC-CCEEEEecCCCCCCHHHH--------HHHHHHHHhhhc-CCcEEEEEecCcc-------------h
Q psy1506 5 SSCQLCFEAVYKN-ADIYLLDDPLSAVDMHVG--------KHLFEDCISGFL-KDKTRILVTHQLQ-------------Y 61 (85)
Q Consensus 5 ~~~~~laral~~~-p~illlDEP~~~LD~~~~--------~~i~~~~~~~~~-~~~tvi~vtH~~~-------------~ 61 (85)
++++..+++++.+ |+++++|||++.+|+... ..++..+..... .+.++++++|... .
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~ 171 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQT 171 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHH
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcc
Confidence 5688888899986 999999999999987421 223322333223 3789999999754 3
Q ss_pred h-hhCCeEEEEcC
Q psy1506 62 L-NHVDQIVFLNN 73 (85)
Q Consensus 62 ~-~~~d~v~~l~~ 73 (85)
+ ..||.+++|++
T Consensus 172 ~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 172 LGYRCKDILRLDK 184 (220)
T ss_dssp HHHTSSEEEEEEE
T ss_pred eeecCcEEEEEEE
Confidence 4 35899999975
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.99 E-value=1.6e-10 Score=75.52 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=47.0
Q ss_pred hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506 6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
-+++++++|..+|+++++|||+ |+++....+ +....|.++++++|+.+....+++++.|.
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL----RAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 4799999999999999999999 887655443 23346889999999987655677766554
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.93 E-value=7.1e-10 Score=69.54 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=45.4
Q ss_pred HHHHHHHHhc-------CCCEEEEecCCCCCCHHH------H------HHHHHHHHhhhc-CCcEEEEEecCc----chh
Q psy1506 7 CQLCFEAVYK-------NADIYLLDDPLSAVDMHV------G------KHLFEDCISGFL-KDKTRILVTHQL----QYL 62 (85)
Q Consensus 7 ~~~laral~~-------~p~illlDEP~~~LD~~~------~------~~i~~~~~~~~~-~~~tvi~vtH~~----~~~ 62 (85)
.+..+++++. +|+++++|||++++|+.. . ..++..+.+... .|.|+|++||.. ..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~ 187 (231)
T 4a74_A 108 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHIL 187 (231)
T ss_dssp HHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhh
Confidence 3455555555 999999999999998841 1 244444444433 489999999944 446
Q ss_pred h-hCCeEEEEcCc
Q psy1506 63 N-HVDQIVFLNNV 74 (85)
Q Consensus 63 ~-~~d~v~~l~~g 74 (85)
. .+|+++++++|
T Consensus 188 ~~~~d~~l~l~~~ 200 (231)
T 4a74_A 188 AHSATLRVYLRKG 200 (231)
T ss_dssp --CCSEEEEEEEC
T ss_pred HhhceEEEEEEec
Confidence 5 48999999864
No 97
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.90 E-value=1.2e-09 Score=72.66 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------cchhh-hCCeEEEEc
Q psy1506 5 SSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------LQYLN-HVDQIVFLN 72 (85)
Q Consensus 5 ~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~~~~~-~~d~v~~l~ 72 (85)
+||+++|||+..+|+ +++|| ||+|+|+.... ..+.+ ..+.|++++||. ++... ....+.++.
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~--~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH--HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH--hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe
Confidence 689999999999999 99999 99999986432 22211 247899999992 22332 367899998
Q ss_pred Ccee
Q psy1506 73 NVSK 76 (85)
Q Consensus 73 ~g~i 76 (85)
.|+.
T Consensus 281 ~Ge~ 284 (302)
T 3b9q_A 281 VGEA 284 (302)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8864
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.86 E-value=6.7e-10 Score=75.49 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
+|++||..+|+++++|||+ |.++.+.+ .+....|.++++++|+.+....++|++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 7999999999999999999 66653333 33345689999999999887778888877543
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.85 E-value=1.9e-09 Score=70.28 Aligned_cols=58 Identities=5% Similarity=-0.018 Sum_probs=40.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCC--CCCHHHH---HHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLS--AVDMHVG---KHLFEDCISGFL-KDKTRILVTHQLQY 61 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~--~LD~~~~---~~i~~~~~~~~~-~~~tvi~vtH~~~~ 61 (85)
|+||.|+ +++++.+|+++++|||++ ++|.... ..++..+..... .|.|+|+++|+...
T Consensus 120 s~g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 120 APEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp SHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred CHHHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 3566554 468889999999999999 9987533 455544433333 48999999998754
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.84 E-value=1.1e-11 Score=77.85 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=45.9
Q ss_pred HHhcCCCEEEEecCCCCC----CHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506 13 AVYKNADIYLLDDPLSAV----DMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNN 73 (85)
Q Consensus 13 al~~~p~illlDEP~~~L----D~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~ 73 (85)
+|+.+|++++||||++++ |+...+++.+.+.+... .+.|++++||+++.+ ..||++++|.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 577899999999999998 66667777655433333 478999999999886 56999988853
No 101
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.83 E-value=4.9e-09 Score=71.39 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------cchhh-hCCeEEEEc
Q psy1506 5 SSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------LQYLN-HVDQIVFLN 72 (85)
Q Consensus 5 ~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~~~~~-~~d~v~~l~ 72 (85)
+||+++|||+..+|+ +++|| ||+|+|+.... ..+. ...+.|+|++||. ++... ....|.++.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~--~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHH--HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHH--HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence 689999999999999 99999 99999987432 2211 1247899999993 23332 367899998
Q ss_pred Ccee
Q psy1506 73 NVSK 76 (85)
Q Consensus 73 ~g~i 76 (85)
.|+.
T Consensus 338 ~Ge~ 341 (359)
T 2og2_A 338 VGEA 341 (359)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8854
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.82 E-value=1.2e-08 Score=71.97 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHh-cCCCEEEEecCCCC-----CCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh---------hh-CCeEEEEcC
Q psy1506 10 CFEAVY-KNADIYLLDDPLSA-----VDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL---------NH-VDQIVFLNN 73 (85)
Q Consensus 10 laral~-~~p~illlDEP~~~-----LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~---------~~-~d~v~~l~~ 73 (85)
+..+|. .+|+++++||||+. +|+..++.++..+......|.|+|++||+++.+ .. ||++++|++
T Consensus 130 ~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 130 INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 444553 79999999999984 588877777765443334589999999998763 44 999999987
Q ss_pred c
Q psy1506 74 V 74 (85)
Q Consensus 74 g 74 (85)
|
T Consensus 210 ~ 210 (525)
T 1tf7_A 210 V 210 (525)
T ss_dssp E
T ss_pred E
Confidence 4
No 103
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.74 E-value=1.5e-09 Score=71.15 Aligned_cols=54 Identities=7% Similarity=-0.044 Sum_probs=41.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
|+||+||+++|||++. ++++|||++++|+.. ..++..+ .+..++|++.|..+.+
T Consensus 100 S~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L----~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 100 NIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHL----SKVVNIIPVIAKADTM 153 (270)
T ss_dssp CTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHH----HTTSEEEEEETTGGGS
T ss_pred Ccccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHH----HhcCcEEEEEeccccC
Confidence 7899999999999876 999999999999975 3333332 2227888888765543
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.68 E-value=4.9e-10 Score=77.90 Aligned_cols=72 Identities=8% Similarity=-0.192 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---C-Cc-----EEEEEecCcchhhhCCeEEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---K-DK-----TRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~-~~-----tvi~vtH~~~~~~~~d~v~~l 71 (85)
|+|| ||+++| +.+|++ |+|+|+.....+.+.+.+... + |. |++++|||++ ...+|++++|
T Consensus 260 S~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l 328 (438)
T 2dpy_A 260 AMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAI 328 (438)
T ss_dssp HHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHH
T ss_pred HHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEE
Confidence 3688 999998 889988 999999988877655433333 2 54 8999999998 5568999999
Q ss_pred cCceeec-Ccccc
Q psy1506 72 NNVSKTS-GWVEE 83 (85)
Q Consensus 72 ~~g~i~~-g~~~~ 83 (85)
.+|++.. +++++
T Consensus 329 ~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 329 LDGHIVLSRRLAE 341 (438)
T ss_dssp SSEEEEECHHHHH
T ss_pred eCcEEEEeCCHHH
Confidence 9998764 55443
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.68 E-value=1.5e-08 Score=68.51 Aligned_cols=58 Identities=9% Similarity=-0.078 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHH------------HHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506 3 GKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHV------------GKHLFEDCISGFL-KDKTRILVTHQLQ 60 (85)
Q Consensus 3 g~~~~~~laral~-------~~p~illlDEP~~~LD~~~------------~~~i~~~~~~~~~-~~~tvi~vtH~~~ 60 (85)
+|.|++..+++++ .+|+++++||||+++|+.. ...++..+..... .+.|+|+++|...
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 5788999999999 6899999999999999852 1233333333223 4789999999764
No 106
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.60 E-value=5.3e-11 Score=75.57 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=46.8
Q ss_pred CCCchhHHHH-----HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-------CCcEEEEEecCcch
Q psy1506 1 MTGKSSCQLC-----FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-------KDKTRILVTHQLQY 61 (85)
Q Consensus 1 ~~g~~~~~~l-----aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-------~~~tvi~vtH~~~~ 61 (85)
|+||+||+++ +|+++.+|++++||||++++|..+...+.+.+..... .....|+++|+++.
T Consensus 124 sggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~e 196 (218)
T 1z6g_A 124 NGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTL 196 (218)
T ss_dssp HHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHH
Confidence 5799999999 8999999999999999999998776666554432211 34566777777654
No 107
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.58 E-value=2e-09 Score=72.94 Aligned_cols=71 Identities=11% Similarity=-0.086 Sum_probs=54.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCc-----EEEEEecCcchhhhCCeEEEEc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDK-----TRILVTHQLQYLNHVDQIVFLN 72 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~ 72 (85)
|.|| |++++| +.+|++ |+|+|+.....+.+. ++... +|. |++++|||++ ...||+++++.
T Consensus 173 S~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~l-ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~ 240 (347)
T 2obl_A 173 ARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKL-LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSIL 240 (347)
T ss_dssp HHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHH-HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHC
T ss_pred HHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHH-HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEee
Confidence 3588 899998 578887 999999987777654 44432 366 8999999998 45689999999
Q ss_pred Cceeec-Ccccc
Q psy1506 73 NVSKTS-GWVEE 83 (85)
Q Consensus 73 ~g~i~~-g~~~~ 83 (85)
+|++.. +++++
T Consensus 241 dG~Ivl~~~l~~ 252 (347)
T 2obl_A 241 DGHIVLTRELAE 252 (347)
T ss_dssp SEEEEBCHHHHT
T ss_pred CcEEEEeCCHHH
Confidence 998864 55443
No 108
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.50 E-value=2.8e-09 Score=71.21 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=30.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCH
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDM 32 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~ 32 (85)
|+||+||+++|++++.+|+++|+|||+..+|+
T Consensus 178 S~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 68999999999999999999999999999975
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.49 E-value=1.4e-09 Score=68.10 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCchhHH-HHHH---HHhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEE----EEecCc
Q psy1506 2 TGKSSCQ-LCFE---AVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRI----LVTHQL 59 (85)
Q Consensus 2 ~g~~~~~-~lar---al~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi----~vtH~~ 59 (85)
+||++++ ++++ |+..+|+++|+|| |+...|....+.+. .++. +..++| .++|+.
T Consensus 86 ~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~-~~l~---~~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 86 SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR-QTLS---TPGTIILGTIPVPKGK 149 (189)
T ss_dssp HHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH-HHHH---CSSCCEEEECCCCCSS
T ss_pred HHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH-HHHh---CCCcEEEEEeecCCCC
Confidence 3566665 3344 5789999999999 89889987554443 3332 333444 344876
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.43 E-value=6.3e-08 Score=59.84 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=40.5
Q ss_pred CCCchhH-HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC
Q psy1506 1 MTGKSSC-QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD 49 (85)
Q Consensus 1 ~~g~~~~-~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~ 49 (85)
++||+|+ +..+++++.+|+.+++|||+|++|..+...+++.+.+...++
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 4588998 899999999999999999999999999999887765554444
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=1.1e-06 Score=53.51 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=35.0
Q ss_pred HHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 13 AVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 13 al~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
..+.+|+++++|||++ ++|+.....++..+-....++.++|++||..
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3456999999999985 8999866666544333334788999999965
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.31 E-value=1e-07 Score=63.17 Aligned_cols=53 Identities=2% Similarity=-0.082 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSA-VDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~-LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
|+||+||+.+|||++ ++++||||++ ||+... .++..+ . ...+.++|+.+||+.
T Consensus 115 sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l-~-~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 115 SGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAI-H-NKVNIVPVIAKADTL 168 (301)
T ss_dssp TSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHH-T-TTSCEEEEECCGGGS
T ss_pred CHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHH-H-hcCCEEEEEEeCCCC
Confidence 689999999988885 9999999985 999752 232221 1 112678888899873
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.22 E-value=2.9e-06 Score=53.35 Aligned_cols=59 Identities=3% Similarity=0.009 Sum_probs=36.1
Q ss_pred cCCCEEEEecCCCCCCHH-------H-----HHHHHHHHHhhhc-CCcEEEEEecCcch-------------------hh
Q psy1506 16 KNADIYLLDDPLSAVDMH-------V-----GKHLFEDCISGFL-KDKTRILVTHQLQY-------------------LN 63 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~-------~-----~~~i~~~~~~~~~-~~~tvi~vtH~~~~-------------------~~ 63 (85)
.+|+++++|||++.+|+. . ...++..+..... .+.++|+++|.... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999874 2 1223333333333 38899999995432 22
Q ss_pred -hCCeEEEEcCc
Q psy1506 64 -HVDQIVFLNNV 74 (85)
Q Consensus 64 -~~d~v~~l~~g 74 (85)
.||.+++|+++
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 57999999854
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.11 E-value=8.9e-07 Score=60.28 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~ 69 (85)
+.+++++|..+|+++++|||+ |++..... ++....|.+++.++|+.+....+++++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~----l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETA----LRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHH----HHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 568999999999999999999 77643332 233445789999999866444455543
No 115
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=7e-06 Score=54.40 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=34.9
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
..+|+++++|||++ ||+...+.+++. ++...++.++|++||++..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~-le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRT-MEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHH-HHHSTTTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHH-HHhhcCCCEEEEEeCCHHH
Confidence 56899999999999 999877777654 4444567899999998754
No 116
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=1.3e-05 Score=57.66 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=46.1
Q ss_pred hcCCCEEEEecC------CCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh--------hh-----CCeEEEEcC
Q psy1506 15 YKNADIYLLDDP------LSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL--------NH-----VDQIVFLNN 73 (85)
Q Consensus 15 ~~~p~illlDEP------~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~--------~~-----~d~v~~l~~ 73 (85)
...|+++++||| |+++|+.....+...+.....+ +.++++++|+.+.. .. ...+.++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 356999999999 9999999877777654443333 56888899987522 11 245788887
Q ss_pred ceeec-Cccc
Q psy1506 74 VSKTS-GWVE 82 (85)
Q Consensus 74 g~i~~-g~~~ 82 (85)
+.... |+.+
T Consensus 224 ~Dlv~~g~~~ 233 (608)
T 3szr_A 224 PDLVDKGTED 233 (608)
T ss_dssp GGGSSSSSTT
T ss_pred hhhcCcccHH
Confidence 76553 5443
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.06 E-value=5.3e-06 Score=49.75 Aligned_cols=44 Identities=14% Similarity=-0.054 Sum_probs=29.9
Q ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcE-EEEEecC
Q psy1506 14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKT-RILVTHQ 58 (85)
Q Consensus 14 l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~t-vi~vtH~ 58 (85)
++.+|+++++|||++ ++....+.+++.+-....+|.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 456899999999998 5554456665543333345677 8888884
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=1.4e-06 Score=60.34 Aligned_cols=53 Identities=4% Similarity=-0.067 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHhcCCC---EEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 3 GKSSCQLCFEAVYKNAD---IYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 3 g~~~~~~laral~~~p~---illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
+++||+++||+++.+|+ ++++|||| +++|+.. ..++.. ...+.++|+|.|..+
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~----L~~~v~iIlVinK~D 178 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKR----LHEKVNIIPLIAKAD 178 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHH----HTTTSEEEEEEESTT
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHH----HhccCcEEEEEEccc
Confidence 45678889999999999 99999999 6999864 233332 334677888877544
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.96 E-value=1.8e-09 Score=67.34 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=44.6
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCC-------CCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSA-------VDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~-------LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
|+||++++++++.+|+++++|||+++ ||+.....+.+.+.+.. .+|.|++.++|+.
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 35788999999999999999999999 89887776766544433 3578888889874
No 120
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.91 E-value=5.3e-06 Score=55.19 Aligned_cols=51 Identities=16% Similarity=0.016 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506 3 GKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ 60 (85)
Q Consensus 3 g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~ 60 (85)
.++||+++|||+..+|+ ++.|| |+++.+ +...+..... .+.|++++||+..
T Consensus 206 Ls~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 206 LKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCCcEEEEECCcc
Confidence 35789999999999999 55556 555543 3332222222 2789999999743
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.87 E-value=4.7e-08 Score=60.03 Aligned_cols=75 Identities=11% Similarity=-0.039 Sum_probs=48.4
Q ss_pred CCchhHHHHHH------HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC-cchhh-hCCeEEEEcC
Q psy1506 2 TGKSSCQLCFE------AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ-LQYLN-HVDQIVFLNN 73 (85)
Q Consensus 2 ~g~~~~~~lar------al~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~-~~~~~-~~d~v~~l~~ 73 (85)
+||+|++.++. ++..+|+...+|+ ++|+...+. ++.+......+.++|.+||. ++.+. .|++|+ ++
T Consensus 97 ~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~ 170 (189)
T 2bdt_A 97 KVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TN 170 (189)
T ss_dssp HCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred cccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hC
Confidence 46677766666 7788888777773 789876666 55544333446789999998 87764 588888 88
Q ss_pred ceeec-Cccc
Q psy1506 74 VSKTS-GWVE 82 (85)
Q Consensus 74 g~i~~-g~~~ 82 (85)
|++.. |+++
T Consensus 171 g~~~~~~~~~ 180 (189)
T 2bdt_A 171 PRFIFCMAGD 180 (189)
T ss_dssp GGGSCC----
T ss_pred CcEEEeecCC
Confidence 98864 6654
No 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.80 E-value=1.8e-06 Score=55.20 Aligned_cols=48 Identities=15% Similarity=-0.045 Sum_probs=37.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
|+||+||+.+ ++++.+|+++++|||....+.. + .. . .+.++++++|+.
T Consensus 118 s~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~-~-~~~~i~v~th~~ 165 (245)
T 2jeo_A 118 DFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RD-M-FHLRLFVDTDSD 165 (245)
T ss_dssp ETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HT-T-CSEEEEEECCHH
T ss_pred cccccCccCc-eEEecCCCEEEEeCccccccHH----H----HH-h-cCeEEEEECCHH
Confidence 5799999987 6888899999999998887763 1 11 1 267999999974
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.74 E-value=1.8e-06 Score=58.26 Aligned_cols=69 Identities=6% Similarity=-0.145 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHh-cCCCEEEEec---CC------CCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEE
Q psy1506 3 GKSSCQLCFEAVY-KNADIYLLDD---PL------SAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 3 g~~~~~~laral~-~~p~illlDE---P~------~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
|++++..+++++. .+|++++||| |+ .++|+..+..+...+.+... .+.++++++|.-.....++++..+
T Consensus 262 ~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 262 EGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp HSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 5567777777764 6999999999 66 57898877777665543333 378899998753222334444444
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.73 E-value=3.9e-05 Score=52.82 Aligned_cols=59 Identities=2% Similarity=-0.035 Sum_probs=38.5
Q ss_pred cCCCEEEEecCCCCCCHHHH------------HHHHHHHHhhhc-CCcEEEEEecCc-------------------chhh
Q psy1506 16 KNADIYLLDDPLSAVDMHVG------------KHLFEDCISGFL-KDKTRILVTHQL-------------------QYLN 63 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~------------~~i~~~~~~~~~-~~~tvi~vtH~~-------------------~~~~ 63 (85)
.+|+++++|||++.+|.... ..++..+..... .+.|+|+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999986432 334443333333 389999999972 1234
Q ss_pred h-CCeEEEEcCc
Q psy1506 64 H-VDQIVFLNNV 74 (85)
Q Consensus 64 ~-~d~v~~l~~g 74 (85)
+ +|.+++|+++
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 3 7888888764
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.68 E-value=7.1e-07 Score=59.00 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=27.4
Q ss_pred CCCchhHHHHH--HHHhcCCCEEEEecCCCCCCHH
Q psy1506 1 MTGKSSCQLCF--EAVYKNADIYLLDDPLSAVDMH 33 (85)
Q Consensus 1 ~~g~~~~~~la--ral~~~p~illlDEP~~~LD~~ 33 (85)
|+||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 136 sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 136 FKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred CCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 57999999987 555 89999999999999985
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.00056 Score=42.73 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=40.7
Q ss_pred cCCCEEEEecCCCCC--CHHHHHHHHHHHHhhh-cCCcEEEEEecCcch--------h-hhCCeEEEEcC
Q psy1506 16 KNADIYLLDDPLSAV--DMHVGKHLFEDCISGF-LKDKTRILVTHQLQY--------L-NHVDQIVFLNN 73 (85)
Q Consensus 16 ~~p~illlDEP~~~L--D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~--------~-~~~d~v~~l~~ 73 (85)
.+|+++++|+|++.+ |+......+..+.+.. ..|.++++++|.... + ..+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999887 5544445555554443 357899999997543 2 45899999864
No 127
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.34 E-value=6.3e-05 Score=55.43 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEE-EecCcchh-hhCC
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRIL-VTHQLQYL-NHVD 66 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~-vtH~~~~~-~~~d 66 (85)
.|+.+|..+++.++.+++++++|||.. ++|......++..+.....+..++++ .||+.+.+ ..++
T Consensus 193 ~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 193 DGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp HHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred HHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 588999999999999999999999996 99977655555554433333456666 48887654 3443
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.20 E-value=4.5e-06 Score=51.35 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHHHhcCCCEE-------EEecCCC---CCCHHHHHHHHHHHHhhhcCC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIY-------LLDDPLS---AVDMHVGKHLFEDCISGFLKD 49 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~il-------llDEP~~---~LD~~~~~~i~~~~~~~~~~~ 49 (85)
|+||+||+++|||++.+|++. .=|.|.. .+|....+.+.+.+.+...+|
T Consensus 105 SgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 105 SKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp GGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 689999999999999999874 2244421 233333455655554555554
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.13 E-value=1.8e-05 Score=52.58 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
|+||+||+..+++++++|+++ ||| +.+.+. ++....+.+++++||+..
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~-l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVA--GEA---------EKLHER-LARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHH-HHHHCSSSCEEECCSSCC
T ss_pred hHHHHHHHhCCEEEEECcccC--CHH---------HHHHHH-HHHhCCCCeEEEecccCC
Confidence 468999998888888899887 888 233333 333446789999999643
No 130
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.12 E-value=0.00086 Score=42.45 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506 11 FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH 64 (85)
Q Consensus 11 aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~ 64 (85)
.+.++..++++||| ||+...+.+.+.+ .++.+|++++|+++.+..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l----~~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKM----PHARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHC----TTCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHc----cCCEEEEEECCCHHHHHH
Confidence 44566789999999 9999877776532 257899999999887643
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.96 E-value=0.00024 Score=49.16 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=39.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEec
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTH 57 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH 57 (85)
++|++|++.++++|...|.++++ +.+|.... ..+..+..... .+.+++++|-
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 36899999999999999999999 99998755 44444444433 4667777763
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.93 E-value=0.0051 Score=41.47 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcC--CCEEEEecCCCCCC----------H---HHHHHH---HHHHHhhhc-CCcEEEEEecCcc------
Q psy1506 6 SCQLCFEAVYKN--ADIYLLDDPLSAVD----------M---HVGKHL---FEDCISGFL-KDKTRILVTHQLQ------ 60 (85)
Q Consensus 6 ~~~~laral~~~--p~illlDEP~~~LD----------~---~~~~~i---~~~~~~~~~-~~~tvi~vtH~~~------ 60 (85)
+-+.++++++.+ |+++++|+|++.+. + ...+.+ +..+..... .+.++|+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677877754 99999999999883 2 111112 222222222 4789999999542
Q ss_pred ----------hhh-hCCeEEEEcCce
Q psy1506 61 ----------YLN-HVDQIVFLNNVS 75 (85)
Q Consensus 61 ----------~~~-~~d~v~~l~~g~ 75 (85)
.+. .++.++.++++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEee
Confidence 133 478888887654
No 133
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.89 E-value=0.0052 Score=40.43 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 5 SSCQLCFEAVYKNADIYLLDDP-LSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 5 ~~~~~laral~~~p~illlDEP-~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+|.+++++...+++++|+||| +.++|......+.. +........+++++.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLGPDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-HhhhcCCCEEEEEEe
Confidence 3577888888899999999999 99999876555543 233333444544443
No 134
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.88 E-value=0.0039 Score=43.14 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=43.4
Q ss_pred HHHHHHHh--cCCCEEEEecCCCCCCHH--------HHHHHHHHHHhhhc-CCcEEEEEec---------C--cc-----
Q psy1506 8 QLCFEAVY--KNADIYLLDDPLSAVDMH--------VGKHLFEDCISGFL-KDKTRILVTH---------Q--LQ----- 60 (85)
Q Consensus 8 ~~laral~--~~p~illlDEP~~~LD~~--------~~~~i~~~~~~~~~-~~~tvi~vtH---------~--~~----- 60 (85)
...+|.+. .+|+++++|+++...+.. ....+...+..... .+.++|+++| + +.
T Consensus 302 ~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr 381 (454)
T 2r6a_A 302 RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIR 381 (454)
T ss_dssp HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHH
T ss_pred HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhh
Confidence 45677776 689999999999877431 11233333222222 3789999999 2 22
Q ss_pred ---hhh-hCCeEEEEcCce
Q psy1506 61 ---YLN-HVDQIVFLNNVS 75 (85)
Q Consensus 61 ---~~~-~~d~v~~l~~g~ 75 (85)
.+. .+|.+++|+++.
T Consensus 382 ~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 382 ESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp TTCSHHHHCSEEEEEEETT
T ss_pred ccchhHhhCCEEEEEeccc
Confidence 333 489999997654
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.78 E-value=9.4e-05 Score=47.03 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=25.3
Q ss_pred HHH-hcCCCEEEEe----cCCCCCCHHHHHHHHHHH
Q psy1506 12 EAV-YKNADIYLLD----DPLSAVDMHVGKHLFEDC 42 (85)
Q Consensus 12 ral-~~~p~illlD----EP~~~LD~~~~~~i~~~~ 42 (85)
+|+ +.+|++++|| |||+++|+.+.+.+.+.+
T Consensus 158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL 193 (246)
T ss_dssp EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred cccccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence 455 8999999999 999999998777665544
No 136
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.77 E-value=0.0023 Score=44.94 Aligned_cols=58 Identities=9% Similarity=0.014 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCCC----------CCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcch
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPLS----------AVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQY 61 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~~----------~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~~ 61 (85)
+++.|-.+++|....|.++++||+.+ +.|....+ .+..++... ..+..+|.+||+++.
T Consensus 94 ~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~-~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHH-HHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHH-HHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 56788899999999999999999943 45554322 333333322 235678888998754
No 137
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.52 E-value=0.00094 Score=44.90 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=22.6
Q ss_pred CCCchhHHHHHHHH---hc--CCCEEEEecCC
Q psy1506 1 MTGKSSCQLCFEAV---YK--NADIYLLDDPL 27 (85)
Q Consensus 1 ~~g~~~~~~laral---~~--~p~illlDEP~ 27 (85)
|.||+||+.++++| .. +++++++|||+
T Consensus 298 sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 298 LGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 45899999999999 76 89999999996
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.51 E-value=0.00076 Score=40.81 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED 41 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~ 41 (85)
+.|++|++.++|++.++|+++ +|+...+.+++.
T Consensus 111 s~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 111 VLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp EEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 468999999999999999876 577665555543
No 139
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.30 E-value=0.0006 Score=48.40 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=32.4
Q ss_pred HHHHhcCCC-EEEEecCCCCCCHHH--HHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506 11 FEAVYKNAD-IYLLDDPLSAVDMHV--GKHLFEDCISGFL-KDKTRILVTHQLQ 60 (85)
Q Consensus 11 aral~~~p~-illlDEP~~~LD~~~--~~~i~~~~~~~~~-~~~tvi~vtH~~~ 60 (85)
++++...|. ++++||+++.++... ....+..+.+.-+ -|.++|++||++.
T Consensus 290 a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 290 HPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred ccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 444566787 899999999887431 2222223323322 3789999999986
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.99 E-value=0.052 Score=35.97 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCCchhHH---HHHHHHhcCCCEEEEecCCC
Q psy1506 1 MTGKSSCQ---LCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 1 ~~g~~~~~---~laral~~~p~illlDEP~~ 28 (85)
++|+.+++ ++++++..+|+++|+|+|..
T Consensus 167 s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 167 EGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 36788998 89999999999999999975
No 141
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.99 E-value=0.0063 Score=36.90 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 44 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~ 44 (85)
....|++++.+|++.++| +|++|..+...+++.+.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999998888876654
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.83 E-value=0.026 Score=39.78 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHh------c-----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh
Q psy1506 1 MTGKSSCQLCFEAVY------K-----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN 63 (85)
Q Consensus 1 ~~g~~~~~~laral~------~-----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~ 63 (85)
||||+|-..+|.+.. . .-.+++|||+ +-+|.+..+..++.+ +. =|.-+|+++=+ ...+
T Consensus 381 SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~-~~--lglQliiatP~-~i~p 455 (483)
T 3euj_A 381 STGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELC-ER--LDMQLLIAAPE-NISP 455 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHH-HH--TTCEEEEEESS-SCCC
T ss_pred CCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHH-HH--cCCEEEEECcc-hhhh
Confidence 789998544443322 1 2358999999 999999877776543 32 26666666655 3345
Q ss_pred hCCeEEEEc
Q psy1506 64 HVDQIVFLN 72 (85)
Q Consensus 64 ~~d~v~~l~ 72 (85)
+.|.++.+-
T Consensus 456 ~v~~~~~~~ 464 (483)
T 3euj_A 456 ERGTTYKLV 464 (483)
T ss_dssp SSSEEEECC
T ss_pred ccCceEEEE
Confidence 677777664
No 143
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.56 E-value=0.034 Score=38.36 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCEEEEecCCCCCCH-HHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 17 NADIYLLDDPLSAVDM-HVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 17 ~p~illlDEP~~~LD~-~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
+|+++++||+..-.+. ...+.++..+-.....+..+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887763 345556544333344678899999974
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.34 E-value=2.5e-06 Score=55.53 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=42.4
Q ss_pred CCCchhHHHHHHHHhcCCCE--EEEecCCCCCCHHHH--------HHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADI--YLLDDPLSAVDMHVG--------KHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~i--lllDEP~~~LD~~~~--------~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
++| ||+++++++..+|++ +|+||+++++|.... +.+.+..+....+|.|.+.+.|+.
T Consensus 174 ~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 240 (261)
T 2eyu_A 174 IGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 240 (261)
T ss_dssp SSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 356 889999999999999 999999999987521 223444555566788777666654
No 145
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.31 E-value=0.011 Score=41.21 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
+.++++|..+++++++|+|+..|.+.....++..+...+. .|.+|+.++.+
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6889999999999999999999998877777666554343 57888888754
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.29 E-value=0.014 Score=38.36 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=30.1
Q ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEE--ecCcchhh-hCCeE
Q psy1506 14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDKTRILV--THQLQYLN-HVDQI 68 (85)
Q Consensus 14 l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~tvi~v--tH~~~~~~-~~d~v 68 (85)
.+.+|+++|+| |+|+|+.....+ ..+..... ...+++++ +|....+. .++++
T Consensus 179 ~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 179 LFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp HGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred HhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence 44899999999 889998644333 33333322 22234444 78765543 34443
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.019 Score=38.38 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred chhHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe--cCc
Q psy1506 4 KSSCQLCFEAVYKNADIYLLD-DPLSAVDMHVGKHLFEDCISGFLKDKTRILVT--HQL 59 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt--H~~ 59 (85)
++|++. +.+...++-++++| +|..++|......++..+.... .+.+++++. ||+
T Consensus 236 ~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl 292 (357)
T 2e87_A 236 EKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDV 292 (357)
T ss_dssp HHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTT
T ss_pred HHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECccc
Confidence 344443 33444666789999 9999999887666666544332 367777877 665
No 148
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.28 E-value=3.6e-06 Score=57.25 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=43.4
Q ss_pred CCCchhHHHHHHHHhcCCCE--EEEecCCCCCCHHH---H-----HHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 1 MTGKSSCQLCFEAVYKNADI--YLLDDPLSAVDMHV---G-----KHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~i--lllDEP~~~LD~~~---~-----~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
++| ||+++++++..+|++ +|+||+++++|... . +.+.+..+....+|.|.+.+.|+..
T Consensus 285 ~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 285 IGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp SSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred CCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 357 789999999999999 99999999998541 1 2234445555667888777777764
No 149
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.27 E-value=7.4e-05 Score=46.34 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73 (85)
Q Consensus 13 al~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 73 (85)
+++.+|++.+|||+++++|..+.+.+.+.+..... + +.+.| .. ..+|.+++.++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~-~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-D---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-H---TTGGG--ST-TTCSEEEECSS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H---HHHhh--cc-CCceEEEECCC
Confidence 56777888888999999998877766654432221 1 12334 11 45787777653
No 150
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.25 E-value=0.038 Score=34.67 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=43.3
Q ss_pred HHHHHHHh--cCCCEEEEecCCCCC--CHHHHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506 8 QLCFEAVY--KNADIYLLDDPLSAV--DMHVGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV 74 (85)
Q Consensus 8 ~~laral~--~~p~illlDEP~~~L--D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g 74 (85)
...++..+ .+.+++||||...++ +.-....+++. +...-++..+|+++++.. . +..+|.|.-|+.-
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~-l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISA-LNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHH-HHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHH-HHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 44455566 568999999997631 21223456654 334445678999998763 3 4679999999764
No 151
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.72 E-value=2.9e-05 Score=53.39 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=44.0
Q ss_pred CC--CEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchh-hhCCeEE-EEcCc-eeec
Q psy1506 17 NA--DIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQLQYL-NHVDQIV-FLNNV-SKTS 78 (85)
Q Consensus 17 ~p--~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~~~~~-~~~d~v~-~l~~g-~i~~ 78 (85)
+| ++.++|||+.++|+...++.+..+... ...|.|++ +|..... ..|+++. +|++| ++..
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence 78 888999999999998877776554443 33456643 9988765 4588988 88888 6653
No 152
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.53 E-value=0.035 Score=33.56 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh
Q psy1506 8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 45 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~ 45 (85)
...|++++.+|++.++| +|++|..+...+++.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999 9999999988888776544
No 153
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.31 E-value=0.011 Score=39.80 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhhhCCeEEEEcCc
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFLNNV 74 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~g 74 (85)
.+..++-.++.++..+|+.+++|||..+ . ..+ ++..+..| .+++.++|..+....++|+..+..+
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~----~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRGG---E----AYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCST---H----HHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchHH---H----HHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 3567888999999999999999999862 2 222 23333444 4678888987655556777666543
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.00 E-value=0.073 Score=35.06 Aligned_cols=43 Identities=12% Similarity=-0.012 Sum_probs=29.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc----CCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL----KDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~----~~~tvi~vtH~~~ 60 (85)
.+|.++++||+... |......+... +.... .+.++|+++|+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~-~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRL-GQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHH-TTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHH-HHhCCCCCcCCEEEEEEECCch
Confidence 45789999999877 77655555433 32222 3678888999874
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.19 E-value=0.23 Score=31.77 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCCCCCCH
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDM 32 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~~~LD~ 32 (85)
++..+..+..+...+|.++++||+.+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 455677788888889999999999877643
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.93 E-value=0.00043 Score=42.95 Aligned_cols=27 Identities=11% Similarity=-0.014 Sum_probs=21.4
Q ss_pred CCCchhHHHHH-HHHhcCCCEEEEecCC
Q psy1506 1 MTGKSSCQLCF-EAVYKNADIYLLDDPL 27 (85)
Q Consensus 1 ~~g~~~~~~la-ral~~~p~illlDEP~ 27 (85)
++||+|+++.+ ++++.++.++++|||.
T Consensus 113 ~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 113 AIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp EEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCCCceEEcCCCcEEEECCceeccCCch
Confidence 36889999887 7788888887788874
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.18 E-value=0.16 Score=34.16 Aligned_cols=51 Identities=4% Similarity=-0.010 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEec
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTH 57 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH 57 (85)
++.+|+..|...+.++++++.|+|...++. -......+.. .. +..+|+|-+
T Consensus 113 ~e~~~l~~a~~~l~~~~l~I~d~~~~si~~--i~~~ir~l~~--~~gg~~lIVIDy 164 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQKKLFFYDKSYVRIEQ--IRLQLRKLKS--QHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHHSCEEEECCTTCCHHH--HHHHHHHHHH--HCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCCcHHH--HHHHHHHHHH--hcCCCCEEEEec
Confidence 467889999999999999999999766543 2222222211 23 567777654
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.73 E-value=0.2 Score=35.80 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 42 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~ 42 (85)
+||+.|++..++....++.++++||... +++.....+++.+
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHH
Confidence 4678888888888888999999999988 7888777776554
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.45 E-value=0.69 Score=30.03 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=26.8
Q ss_pred hcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
+.+++++++||+..-- +....+.++..+-.....+..+|+++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3579999999986633 3244555554432233456667777664
No 160
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.51 E-value=0.64 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=32.2
Q ss_pred cCCCEEEEecCCCCCC---HHHHHHHHHHHHhhhc-CCcEEEEEecCcchh
Q psy1506 16 KNADIYLLDDPLSAVD---MHVGKHLFEDCISGFL-KDKTRILVTHQLQYL 62 (85)
Q Consensus 16 ~~p~illlDEP~~~LD---~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~ 62 (85)
..|.++++||...-++ +...+.+ ..+.+..+ .|..++++||++..+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l-~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFL-RDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHH-HHHHHHGGGGTCEEEEEESCGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHH-HHHHHHhhhhCeEEEEEcCCHHHh
Confidence 3588999999999885 4333433 44444444 488999999988643
No 161
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.43 E-value=0.11 Score=34.60 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=31.5
Q ss_pred CCchhHHHHHHHHhc------CCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506 2 TGKSSCQLCFEAVYK------NADIYLLDDPLSAVDMHVGKHLFEDCIS 44 (85)
Q Consensus 2 ~g~~~~~~laral~~------~p~illlDEP~~~LD~~~~~~i~~~~~~ 44 (85)
.|++|++..+++++. +|+++. +|++|......+++.+.+
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 467899999998887 688876 999999988888776544
No 162
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.16 E-value=2.5 Score=27.60 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHhcCCCEEEEecCC
Q psy1506 3 GKSSCQLCFEAVYKNADIYLLDDPL 27 (85)
Q Consensus 3 g~~~~~~laral~~~p~illlDEP~ 27 (85)
++.+|+..|...+.++++++.|+|.
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~ 161 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAG 161 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSC
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCC
Confidence 4556666666666666666666654
No 163
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.03 E-value=0.85 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
+|.++++||.-. +++.....+... +.....+..+|+++++...
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~-l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKT-LEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHH-HHSCCTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHH-HhcCCCceEEEEEeCChHh
Confidence 468999999766 676655555433 3332345678888876543
No 164
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.02 E-value=0.32 Score=31.12 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=28.2
Q ss_pred HHHHhcCCCEEEEecCCCC-CCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 11 FEAVYKNADIYLLDDPLSA-VDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 11 aral~~~p~illlDEP~~~-LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..++..+|+++++||+-.. .+.......++.+......+..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3445578999999997642 3322222333444334456778888877
No 165
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.49 E-value=0.00033 Score=49.57 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEE--EecCcchhh
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRIL--VTHQLQYLN 63 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~--vtH~~~~~~ 63 (85)
|+||+||..++ +=| ++|+|+...+.++..+.....++.++++ +||+++.+.
T Consensus 402 s~G~~~R~~~a-----------i~E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 402 RGNTRLRRTKE-----------VNE-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp SSSCEEEEEEE-----------EEE-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred eCCCceEEEEE-----------EEE-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 45666665543 126 9999987554443332222234778875 899998763
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.42 E-value=0.32 Score=29.31 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=24.8
Q ss_pred hcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhh-cCCcEEEEEec-Ccchh
Q psy1506 15 YKNADIYLLDDPLS-AVDMHVGKHLFEDCISGF-LKDKTRILVTH-QLQYL 62 (85)
Q Consensus 15 ~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH-~~~~~ 62 (85)
+.+++++++||+-. .++......++..++... .++..+|++|+ .+..+
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQL 163 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHH
Confidence 45788999999933 233222333443333332 34556777766 34443
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.01 E-value=0.59 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=24.1
Q ss_pred CCEEEEecCCCCCCH---HHHHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506 18 ADIYLLDDPLSAVDM---HVGKHLFEDCISGFL-KDKTRILVTHQLQ 60 (85)
Q Consensus 18 p~illlDEP~~~LD~---~~~~~i~~~~~~~~~-~~~tvi~vtH~~~ 60 (85)
|.++++||+....+. .....+... ..... .+.++|+++|+..
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~-~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRI-NSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHH-HHSCCC--EEEEEEESCGG
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhc-hhhcCCCeEEEEEEECCCC
Confidence 889999999886632 222222221 11112 2568888999764
No 168
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.76 E-value=0.61 Score=31.08 Aligned_cols=62 Identities=11% Similarity=-0.048 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc---------hh-hhCCeEEEEcCcee
Q psy1506 9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ---------YL-NHVDQIVFLNNVSK 76 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~---------~~-~~~d~v~~l~~g~i 76 (85)
.++|++..+++++++|.++. .|.. .....+.+ ..+.+.+++||.-. .. .....|.++..|+.
T Consensus 235 ~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~--~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 235 KIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE--AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH--HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH--hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 47889988888889996654 3322 12222111 23778999999431 11 12457788877754
No 169
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.34 E-value=0.53 Score=30.94 Aligned_cols=53 Identities=9% Similarity=0.027 Sum_probs=31.6
Q ss_pred hHHHHHHHHh---cCCCEEEEecCCCCCCHH--------HH----HHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 6 SCQLCFEAVY---KNADIYLLDDPLSAVDMH--------VG----KHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 6 ~~~~laral~---~~p~illlDEP~~~LD~~--------~~----~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
+.+..++.++ .+|+++++|+.++-.... .+ .+++..+..... .+.++|++.|-
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 4555666676 579999999988765321 11 222222222222 37899998874
No 170
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.79 E-value=0.013 Score=37.94 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=31.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCC------------CCCHHHHHHHHHHH
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLS------------AVDMHVGKHLFEDC 42 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~------------~LD~~~~~~i~~~~ 42 (85)
++||+|++.+++|+.++|+++ |||+. --|...+..+++.+
T Consensus 139 sgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 139 DGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 479999999999999999985 99864 23666666666544
No 171
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.31 E-value=0.9 Score=32.66 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=38.4
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEec
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTH 57 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH 57 (85)
+.+...+.+.++.+|..++++.+++++|..+.. ... +..... . ..|++++|+
T Consensus 170 ~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~-~l~-la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 170 GYKIKTLIKKYIQRQETISLVVVPSNVDIATTE-ALS-MAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH-HHH-HHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchhccHH-HHH-HHHHHhhcCCceEEEecc
Confidence 567788999999999999999999999986433 333 333332 3 478888888
No 172
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.05 E-value=0.39 Score=31.50 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=23.6
Q ss_pred hcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhh-cCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLS-AVDMHVGKHLFEDCISGF-LKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~ 58 (85)
+.++++|++||.-. .++......++..++... .++..+|++|+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 45789999999832 334332333444344433 345677777774
No 173
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.01 E-value=1.1 Score=29.78 Aligned_cols=51 Identities=4% Similarity=-0.024 Sum_probs=29.7
Q ss_pred HHHHHHHh----cCCCEEEEecCCCCCCHH--------H----HHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 8 QLCFEAVY----KNADIYLLDDPLSAVDMH--------V----GKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 8 ~~laral~----~~p~illlDEP~~~LD~~--------~----~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
+..++.++ .+++++++|+.++-.... . ...++..+..... .+.++|++.|-
T Consensus 206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 206 LDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 33445555 578999999999876432 1 1222222222222 37889998884
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.25 E-value=1.1 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=23.2
Q ss_pred cCCCEEEEecCCCCCC-HHHHHHHHHHHHhh-hcCCcE-EEEEecC
Q psy1506 16 KNADIYLLDDPLSAVD-MHVGKHLFEDCISG-FLKDKT-RILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD-~~~~~~i~~~~~~~-~~~~~t-vi~vtH~ 58 (85)
.+|.++++||...--. ......++.. +.. ...+.. +|++++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDL-YNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHH-HHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHH-HHHHHHcCCCeEEEEcCC
Confidence 5689999999655332 2113444433 333 233444 7777763
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.24 E-value=1.9 Score=27.87 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
+++++++|| ...+++.....+... ++.......+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRT-METYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHH-HHhcCCCceEEEEeCchh
Confidence 456999999 677887766655543 444344455677776654
No 176
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.13 E-value=2.7 Score=26.44 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=32.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------c-ch-hhhCCeEEEEc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------L-QY-LNHVDQIVFLN 72 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~-~~-~~~~d~v~~l~ 72 (85)
+++++++||..- ++....+ .+..+ ...+.++|++.|+ . .. +..+|++..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L---~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANIL---AENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHH---HHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHH---HhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6654222 22222 2248899999992 2 22 35689988875
No 177
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.99 E-value=4.2 Score=25.05 Aligned_cols=42 Identities=5% Similarity=0.146 Sum_probs=25.9
Q ss_pred HhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEE
Q psy1506 14 VYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILV 55 (85)
Q Consensus 14 l~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~v 55 (85)
-+.+.+++++||... ++|.......++.+.....+-.+++++
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 468899999999987 577765444444444333222344443
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.14 E-value=2.6 Score=26.53 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCEEEEecCCCC----------CCHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506 8 QLCFEAVYKNADIYLLDDPLSA----------VDMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL 62 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~~----------LD~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~ 62 (85)
-.+..+....|.++++||.-.- -+......+. .++... . .+..+|.+|+.++.+
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~-~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLM-QLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHH-HHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHH-HHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3455566678899999997542 2444334443 333332 1 244677777766443
No 179
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.89 E-value=6.7 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=18.3
Q ss_pred HHHHHHHHh--cCCCEEEEecCCCCCC
Q psy1506 7 CQLCFEAVY--KNADIYLLDDPLSAVD 31 (85)
Q Consensus 7 ~~~laral~--~~p~illlDEP~~~LD 31 (85)
-..+++.+. .+++++++|.+++-..
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 344555554 6799999999988763
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.11 E-value=0.46 Score=28.70 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch---hhhCCeEEEEc
Q psy1506 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY---LNHVDQIVFLN 72 (85)
Q Consensus 2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~---~~~~d~v~~l~ 72 (85)
.|+.+|..+++.+..+|+....+ .+.++|...+.+.+. +... .+..+|+.+|.+.. ...+|.+++++
T Consensus 62 ~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~-~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 62 QGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQK-LAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHH-HHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHH-HHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 46778888888777776533222 233445433333222 2211 34577878886643 34689999886
No 181
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=77.90 E-value=11 Score=24.07 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=35.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------c--chhhhCCeEEEEc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------L--QYLNHVDQIVFLN 72 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~--~~~~~~d~v~~l~ 72 (85)
.+.+++++||..-..+ ..++.+.+ ...|..||+..++ . ..+..+|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l---~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAM---ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHH---HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHH---HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988754 33343332 1267899999888 3 2346789888775
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.52 E-value=0.069 Score=36.87 Aligned_cols=20 Identities=0% Similarity=-0.112 Sum_probs=18.2
Q ss_pred CCCchhHHHHHHHHhcCCCEEE
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYL 22 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~ill 22 (85)
|+||+|| |||+++.+|++..
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 5899999 9999999999875
No 183
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.59 E-value=6.4 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=26.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.++.++++||.- .+++.....+.. ++.....+..+|++++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~-~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRR-TMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHH-HHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHH-HHHhcCCCCeEEEEeCChh
Confidence 467899999964 455554444443 3343334556777777654
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.49 E-value=14 Score=23.62 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCEEEEecCC
Q psy1506 7 CQLCFEAVYKNADIYLLDDPL 27 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~ 27 (85)
+-.+..|....|.++++||.-
T Consensus 98 ~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHhcCCeEEEEEChH
Confidence 445566666789999999965
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=71.35 E-value=7.5 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=22.3
Q ss_pred HHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHH
Q psy1506 9 LCFEAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDC 42 (85)
Q Consensus 9 ~laral~~~p-~illlDEP~~~LD~~~~~~i~~~~ 42 (85)
.+..++...| .++++||. ..+++.....+++.+
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQML 143 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHH
Confidence 4556665555 69999998 456777666665543
No 186
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=70.69 E-value=13 Score=24.17 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 12 ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..+..+.+++++||+...+.....+.+.. .++....+..+|+++.+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~-~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLT-LTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHH-HHTTCBTTEEEEEEESC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHH-HHhcCCCCeEEEEEcCC
Confidence 34567889999999977566554454543 33333345555555544
No 187
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.65 E-value=8 Score=23.18 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc-----------hhhhCCeEEEEcC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-----------YLNHVDQIVFLNN 73 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-----------~~~~~d~v~~l~~ 73 (85)
+++++++||.-- +++. ....+.. ...++..++++.++.+ .++.+|.+.-++.
T Consensus 76 ~~dvviIDE~Q~-~~~~-~~~~l~~---l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS-LFEVVKD---LLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTT-HHHHHHH---HHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHH-HHHHHHH---HHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999864 5554 2222222 2234778888877433 2345888877753
No 188
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.21 E-value=12 Score=24.60 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCEEEEecC
Q psy1506 7 CQLCFEAVYKNADIYLLDDP 26 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP 26 (85)
+..+..+-..+|.++++||.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHhcCCeEEEEeCc
Confidence 34455566678999999998
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=69.75 E-value=22 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=17.0
Q ss_pred HHHHHHHHh--cCCCEEEEecCCCCCC
Q psy1506 7 CQLCFEAVY--KNADIYLLDDPLSAVD 31 (85)
Q Consensus 7 ~~~laral~--~~p~illlDEP~~~LD 31 (85)
-+.+++.++ .+|+++++|.-++-..
T Consensus 127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 127 ALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 345556555 5699999998766553
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=69.51 E-value=10 Score=24.99 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=31.8
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CC-cEEEEEec
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KD-KTRILVTH 57 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~-~tvi~vtH 57 (85)
+.+...+++..+.+|+++++.-..+..|... ...+.. ..... .+ .++++++.
T Consensus 159 ~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l-~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 159 VKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKI-SREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHH-HHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHH-HHHhcccCCCEEEEEeC
Confidence 4566889999999999888775444555543 222222 33333 34 46666665
No 191
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=68.89 E-value=9.1 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=26.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+++++++||.- .++......+... ++....+..+|+++++..
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKT-LEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHH-HHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHH-HhcCCCceEEEEEeCChH
Confidence 346899999964 4566555555433 333233556777777654
No 192
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=67.51 E-value=18 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCEEEEecCC-CC--CCHHHHHHHH
Q psy1506 9 LCFEAVYKNADIYLLDDPL-SA--VDMHVGKHLF 39 (85)
Q Consensus 9 ~laral~~~p~illlDEP~-~~--LD~~~~~~i~ 39 (85)
+++.+...+++++|+|+|- .. .|+....++.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~ 204 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK 204 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH
Confidence 3444555699999999996 34 6765544443
No 193
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=65.39 E-value=3.2 Score=27.86 Aligned_cols=39 Identities=13% Similarity=-0.067 Sum_probs=25.2
Q ss_pred CchhHHHHH----HHH-hcCCCEEEEecCCCCCCHHHHHHHHHHHHhh
Q psy1506 3 GKSSCQLCF----EAV-YKNADIYLLDDPLSAVDMHVGKHLFEDCISG 45 (85)
Q Consensus 3 g~~~~~~la----ral-~~~p~illlDEP~~~LD~~~~~~i~~~~~~~ 45 (85)
|+.+++..+ +++ ..+|++ +|+|++|..+...+++.+.+.
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHH
Confidence 456666665 555 334444 789999988877777665443
No 194
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=62.83 E-value=7.6 Score=25.15 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCchhHHHHHHHHhcCC--------------CEEEEecCCC-CCCHH
Q psy1506 2 TGKSSCQLCFEAVYKNA--------------DIYLLDDPLS-AVDMH 33 (85)
Q Consensus 2 ~g~~~~~~laral~~~p--------------~illlDEP~~-~LD~~ 33 (85)
+|..++-++.+++-.+. -.+++||.++ .|+..
T Consensus 204 ~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~ 250 (289)
T 1ne7_A 204 TGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVK 250 (289)
T ss_dssp CSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHH
T ss_pred cCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccc
Confidence 68889999998887554 3899999997 46543
No 195
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=62.34 E-value=1.3 Score=30.98 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh---hhCCeEEEEcCcee
Q psy1506 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL---NHVDQIVFLNNVSK 76 (85)
Q Consensus 12 ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~---~~~d~v~~l~~g~i 76 (85)
|||..| +++|+ ||++++||. ...+. ..+.+ +.++.+++|++... ..++++..+..+.+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~----~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gi 90 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLT----SALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGF 90 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCC----EESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEE
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEE----eeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeE
Confidence 788888 99999 999999994 32221 12222 45788889987654 23455555544433
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=61.78 E-value=34 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=28.8
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
..++-++++| |+.++++.+. .++..+. ..+.+++++.|..+.
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~-~~~~~~~---~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTE-RAWTVAE---RLGLPRMVVVTKLDK 138 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHH-HHHHHHH---HTTCCEEEEEECGGG
T ss_pred hcCcEEEEEc-CCcccchhHH-HHHHHHH---HccCCEEEEecCCch
Confidence 4677788899 9999998754 3333322 246778888887653
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.87 E-value=20 Score=20.16 Aligned_cols=40 Identities=8% Similarity=-0.072 Sum_probs=24.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQ 58 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~ 58 (85)
+..++++||.- .+++.....+++. +... ..+..+|.+|+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~-l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFI-IGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHH-HHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHH-HHhCCCCCEEEEEecCC
Confidence 46799999965 5566656666543 3332 234566776663
No 198
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=60.84 E-value=6.7 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCchhHHHHHHHHhcCC--------------CEEEEecCCC-CCCHH
Q psy1506 2 TGKSSCQLCFEAVYKNA--------------DIYLLDDPLS-AVDMH 33 (85)
Q Consensus 2 ~g~~~~~~laral~~~p--------------~illlDEP~~-~LD~~ 33 (85)
+|..++-++.+++-.+. ..+++||.++ .|+..
T Consensus 204 ~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 204 LGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp CSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred cChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 68889999998887542 5799999997 46544
No 199
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.86 E-value=4.2 Score=26.36 Aligned_cols=43 Identities=16% Similarity=-0.032 Sum_probs=23.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LKDKTRILVTHQL 59 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~ 59 (85)
+|.++++||.-.-.+.......+..+.... ..+..+|++|++.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 366999999876543310223333334433 2245788888866
No 200
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=58.70 E-value=3.7 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506 9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 44 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~ 44 (85)
++|.|-.. ..+ .=|||.|+|.++-..+++.++.
T Consensus 178 avAka~a~-~g~--~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 178 AVAKACAA-HDF--WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp HHHHHHHH-TTC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHH-cCc--eECCCCCccHhhHHHHHHHHHH
Confidence 44555544 344 4599999999998888876544
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=57.92 E-value=40 Score=22.98 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCEEEEecCCCCC------CHHHHHHHHHHHHhhhc------CCcEEEEEecCcchh-----hhCCeEEE
Q psy1506 8 QLCFEAVYKNADIYLLDDPLSAV------DMHVGKHLFEDCISGFL------KDKTRILVTHQLQYL-----NHVDQIVF 70 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~~L------D~~~~~~i~~~~~~~~~------~~~tvi~vtH~~~~~-----~~~d~v~~ 70 (85)
-.+..+-...|.++++||.-+-. +......+...++.... .+..+|.+|+.++.+ +.+++++.
T Consensus 218 ~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 297 (444)
T 2zan_A 218 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIY 297 (444)
T ss_dssp HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEE
Confidence 34445556789999999986532 11223344444444321 234666678765432 33555554
Q ss_pred E
Q psy1506 71 L 71 (85)
Q Consensus 71 l 71 (85)
+
T Consensus 298 i 298 (444)
T 2zan_A 298 I 298 (444)
T ss_dssp C
T ss_pred e
Confidence 4
No 202
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=57.70 E-value=3.9 Score=26.74 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506 9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 44 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~ 44 (85)
++|.|-.. ..+ .=|||.|+|.++-..+.+.++.
T Consensus 201 avAkAca~-~g~--~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 201 AVAKACAE-EGF--ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp HHHHHHHH-HTC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHH-cCc--eECCCCCccHhHHHHHHHHHHH
Confidence 34444443 234 4599999999998888876543
No 203
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.47 E-value=22 Score=19.99 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
+..++++||.- .+++.....++..+ .....+..+|.+|+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l-~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQ-SQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHH-HSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHH-hhcCCCEEEEEECCc
Confidence 56789999985 56777666666543 333334566777664
No 204
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.38 E-value=36 Score=22.04 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEEecCCC
Q psy1506 8 QLCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 8 ~~laral~~~p~illlDEP~~ 28 (85)
-.+..+-...|.++++||.-+
T Consensus 96 ~lf~~a~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 96 NLFQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp HHHHHHHHTSSEEEEEETTTG
T ss_pred HHHHHHHhcCCcEEEeecHHH
Confidence 344455567899999999864
No 205
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.36 E-value=24 Score=22.17 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=25.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+++++++||.- .+++.....+.. .+.....+..+|+++....
T Consensus 109 ~~~~vliiDe~~-~l~~~~~~~L~~-~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEAD-ALTQDAQQALRR-TMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHH-HHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCC-cCCHHHHHHHHH-HHHhcCCCCeEEEEeCCcc
Confidence 468899999964 345554454543 3333334556677776654
No 206
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=57.03 E-value=14 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
.++++++|-|..+++... .+. ..++..++++|.++..
T Consensus 295 ~fD~Vv~dPPr~g~~~~~----~~~----l~~~g~ivyvsc~p~t 331 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSET----EKM----VQAYPRILYISCNPET 331 (369)
T ss_dssp CEEEEEECCCTTCCCHHH----HHH----HTTSSEEEEEESCHHH
T ss_pred CCCEEEECcCccccHHHH----HHH----HhCCCEEEEEECCHHH
Confidence 578999999999998642 222 2256688889887754
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.12 E-value=33 Score=23.96 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC----------CHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAV----------DMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL 62 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~L----------D~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~ 62 (85)
|..+..|-...|.|+++||--+-. +.. ....+..++... . .+.-+|.+|++++.+
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~-~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGERE-IQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCH-HHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHH-HHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 455666767889999999976433 222 222333333322 1 245677788877654
No 208
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=56.06 E-value=18 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=25.5
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+.+++++||+-. +.....+.+++. ++.-..+..+|+++++++
T Consensus 107 ~~~kvviIdead~-l~~~a~naLLk~-lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAAL-LTDAAANALLKT-LEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGGG-BCHHHHHHHHHH-HTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchhh-cCHHHHHHHHHH-hcCCCCCeEEEEEeCChH
Confidence 3568999999753 555544544433 232223456777888765
No 209
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=55.84 E-value=34 Score=21.41 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=33.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec---------Cc-c-hhhhCCeEEEEcC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH---------QL-Q-YLNHVDQIVFLNN 73 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH---------~~-~-~~~~~d~v~~l~~ 73 (85)
+.+++++||..- +|++.. ..+..+ ...+..||+... .. . .+..+|.|.-|+.
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l---~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVL---ANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHH---HHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHH---hhCCCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 478999999876 766533 222222 235788999888 22 2 2457899888763
No 210
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=55.74 E-value=40 Score=22.41 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~ 59 (85)
|+...-=+++..+|...|+++++=|- ..|. +.+.+.+.+... ++..+|+++...
T Consensus 169 MGR~aG~lAl~a~lA~ga~~iliPE~--~~~~---~~i~~~i~~~~~~gk~~~iIvvaEG~ 224 (319)
T 1zxx_A 169 MGRNCGDIAMRVGVACGADAIVIPER--PYDV---EEIANRLKQAQESGKDHGLVVVAEGV 224 (319)
T ss_dssp CCTTCCHHHHHHHHHTTCSEEECTTS--CCCH---HHHHHHHHHHHHTTCCCEEEEEETTT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEeCCC--CCCH---HHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 44445568899999999999998543 2333 244444443332 456888887643
No 211
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=55.14 E-value=29 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCEEEEecCCC
Q psy1506 9 LCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~ 28 (85)
.+..+-...|.++++||.-+
T Consensus 135 ~f~~a~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDA 154 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGG
T ss_pred HHHHHHHcCCeEEEEechHh
Confidence 44455556899999999764
No 212
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=55.06 E-value=8.7 Score=23.04 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=21.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRIL 54 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~ 54 (85)
.+-+++++||...-++.......+..+.....++..+++
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEE
Confidence 456899999999877632223333344444433444443
No 213
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=55.04 E-value=21 Score=18.96 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=28.6
Q ss_pred cCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecC
Q psy1506 16 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~ 58 (85)
.+|+.+++| .....+|......+... .+.. ..|..+.++.-+
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~-~~~~~~~g~~l~l~~~~ 85 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMA-VLKFRREGAEVRIVGMN 85 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHH-HHHHHHTTCEEEEESHH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHH-HHHHHhCCCEEEEEcCC
Confidence 467888888 77888999866666543 4443 467777776543
No 214
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=54.76 E-value=25 Score=19.43 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.6
Q ss_pred hcCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcc
Q psy1506 15 YKNADIYLLD-DPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQ 60 (85)
Q Consensus 15 ~~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~ 60 (85)
..+|+.+++| ...+.+|......+.. +.+.. ..|..++++.-+..
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~-~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEE-MIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHH-HHHHHHTTTCEEEEECCCHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHH-HHHHHHHCCCEEEEEcCCHH
Confidence 3578899999 8899999986665554 44444 45778877765443
No 215
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=54.63 E-value=43 Score=22.28 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEec-CCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDD-PLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDE-P~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~ 59 (85)
|+...-=+++..+|...|+++++=| |+ |. +.+.+.+.+... ++..+|+++...
T Consensus 170 MGR~aG~lAl~a~lA~ga~~iliPE~~~---~~---~~i~~~i~~~~~~gk~~~iIvvaEG~ 225 (320)
T 1pfk_A 170 MGRYCGDLTLAAAIAGGCEFVVVPEVEF---SR---EDLVNEIKAGIAKGKKHAIVAITEHM 225 (320)
T ss_dssp CCTTCCHHHHHHHHHTTCSEEECTTSCC---CH---HHHHHHHHHHHHTTCSCEEEEEESSS
T ss_pred CCcCHHHHHHHHHHhcCCCEEEeCCCCC---CH---HHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 4444556889999999999999854 43 33 234444443332 456788887643
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.48 E-value=0.13 Score=32.84 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPL 27 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~ 27 (85)
++||+|++.+++|+.++|++ +|++.
T Consensus 171 sgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 171 DGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp TTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred hCCCCCCCEEEEEecCCchh--CCHhH
Confidence 47899999999999999887 57653
No 217
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=54.32 E-value=24 Score=22.51 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
+++++++||.-.--.......+. .+++....+..+|++++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~-~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLR-SFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHH-HHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHH-HHHHhCCCCcEEEEEeCCcc
Confidence 67899999985432143334333 33444444567888887654
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=54.20 E-value=26 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCEEEEecC
Q psy1506 8 QLCFEAVYKNADIYLLDDP 26 (85)
Q Consensus 8 ~~laral~~~p~illlDEP 26 (85)
-.+..|--..|.++++||.
T Consensus 288 ~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp HHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHhcCCcEEEecch
Confidence 3455566677889999997
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=53.17 E-value=23 Score=24.09 Aligned_cols=49 Identities=4% Similarity=-0.119 Sum_probs=27.9
Q ss_pred HHHHHHh--cCCCEEEEecCCCCCCH------HHH----HHHHHHHHhhhc-CCcEEEEEec
Q psy1506 9 LCFEAVY--KNADIYLLDDPLSAVDM------HVG----KHLFEDCISGFL-KDKTRILVTH 57 (85)
Q Consensus 9 ~laral~--~~p~illlDEP~~~LD~------~~~----~~i~~~~~~~~~-~~~tvi~vtH 57 (85)
+.+|.+. .+++++++|....-... .+. ..+...+..... .+.++|+++|
T Consensus 300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3445554 57999999988765432 111 122222222222 3789999988
No 220
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=53.02 E-value=6.6 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCchhHHHHHHHHhcC-CCEEEEecCCC
Q psy1506 2 TGKSSCQLCFEAVYKN-ADIYLLDDPLS 28 (85)
Q Consensus 2 ~g~~~~~~laral~~~-p~illlDEP~~ 28 (85)
+|..+.-++..||-.. ...|+.||.++
T Consensus 232 ~G~~Ka~AI~aal~g~~~~~LItDe~aA 259 (264)
T 2r5f_A 232 GGVRKVQAIKGALLGGYLDVLITDVGTA 259 (264)
T ss_dssp CCGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 6878888888777665 57999998764
No 221
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=52.97 E-value=26 Score=21.26 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=31.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc----------c-hhhhCCeEEEEc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL----------Q-YLNHVDQIVFLN 72 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~----------~-~~~~~d~v~~l~ 72 (85)
+.+++++||.-- +|++.. +.+......+..+|+..++. . .+..+|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~v----~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIV----EIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHHH----HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHHH----HHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999654 666432 22222233478888888743 2 235688887664
No 222
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=51.64 E-value=7.2 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHhcC-CCEEEEecCCC
Q psy1506 2 TGKSSCQLCFEAVYKN-ADIYLLDDPLS 28 (85)
Q Consensus 2 ~g~~~~~~laral~~~-p~illlDEP~~ 28 (85)
+|..+.-++..||-.. ...|+.||.++
T Consensus 229 ~G~~Ka~AI~aal~g~~~~~LItDe~aA 256 (266)
T 2gnp_A 229 YGDTKVSSILSVLRANLVNHLITDKNTI 256 (266)
T ss_dssp CSGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred cChhhHHHHHHHHhcCCCCEEEECHHHH
Confidence 6888888888887665 57999999765
No 223
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.60 E-value=31 Score=19.53 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=14.8
Q ss_pred HhcCCCEEEEecCCCCCCHHHHHHH
Q psy1506 14 VYKNADIYLLDDPLSAVDMHVGKHL 38 (85)
Q Consensus 14 l~~~p~illlDEP~~~LD~~~~~~i 38 (85)
|..+.+++++.+|...+.....+.+
T Consensus 73 lF~~rrlV~v~~~~~~~~~~~~~~L 97 (140)
T 1jql_B 73 LFASRQTLLLLLPENGPNAAINEQL 97 (140)
T ss_dssp TTCCCEEEEEECCTTCSCTTHHHHH
T ss_pred CCCCCEEEEEECCCCCCChHHHHHH
Confidence 4466677788877765544333433
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=51.45 E-value=52 Score=22.05 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=16.7
Q ss_pred HHHHHHHh--cCCCEEEEecCCCCC
Q psy1506 8 QLCFEAVY--KNADIYLLDDPLSAV 30 (85)
Q Consensus 8 ~~laral~--~~p~illlDEP~~~L 30 (85)
+.+++.+. .+++++++|..++-.
T Consensus 141 l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 141 LEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHHHHHHhcCCCCEEEEeChHHhc
Confidence 44556665 568999999988654
No 225
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=50.73 E-value=40 Score=20.49 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=13.2
Q ss_pred HHHHHHhcCCCEEEEecCCCC
Q psy1506 9 LCFEAVYKNADIYLLDDPLSA 29 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~~ 29 (85)
.+..+....|.++++||.-.-
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHHHHHHTCSEEEEEECC---
T ss_pred HHHHHHhcCCeEEEEeCcchh
Confidence 344455567899999998764
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.16 E-value=24 Score=22.52 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=10.8
Q ss_pred hcCCCEEEEecCCC
Q psy1506 15 YKNADIYLLDDPLS 28 (85)
Q Consensus 15 ~~~p~illlDEP~~ 28 (85)
...|.++++||--+
T Consensus 97 ~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 97 KGNMCCLFINDLDA 110 (293)
T ss_dssp TSSCCCEEEECCC-
T ss_pred cCCCeEEEEechhh
Confidence 45789999999854
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.07 E-value=60 Score=22.34 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC----------CHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh-----h--h
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAV----------DMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL-----N--H 64 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~L----------D~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~-----~--~ 64 (85)
|-.+..|-...|.|+++||--+-. |.. .+..+..++... . .+..+|.+|++++.+ + .
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~-~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGR 309 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSE-VQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR 309 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGH-HHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHH-HHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCc
Confidence 345666667889999999976543 222 233333444332 1 245677788876543 2 3
Q ss_pred CCeEEEE
Q psy1506 65 VDQIVFL 71 (85)
Q Consensus 65 ~d~v~~l 71 (85)
.|+.+.+
T Consensus 310 fD~~I~i 316 (405)
T 4b4t_J 310 IDRKIEF 316 (405)
T ss_dssp SCCEEEC
T ss_pred CceEEEc
Confidence 4666655
No 228
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.76 E-value=24 Score=22.17 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=24.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
+++++++||.-. ++......+.. .+.....+..+|+++++..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~-~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRR-TMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHH-HHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHH-HHhccCCCceEEEEeCChh
Confidence 478999999643 44444444433 3333334556777777654
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.40 E-value=61 Score=22.35 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCC----------CCCHHHHHHHHHHHHhhh---c--CCcEEEEEecCcch
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLS----------AVDMHVGKHLFEDCISGF---L--KDKTRILVTHQLQY 61 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~----------~LD~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~ 61 (85)
|-.|.+|-...|.++++||--+ +-|.. ..+++..++... . .+..+|.+|++++.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~-~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDRE-VQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCH-HHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChH-HHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 3456666678899999998632 22333 233333444332 1 24567788887654
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.16 E-value=52 Score=23.15 Aligned_cols=24 Identities=25% Similarity=0.065 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAV 30 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~L 30 (85)
|..+..|-...|.|+++||--+-.
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTS
T ss_pred HHHHHHHHhcCCceEeeccccccc
Confidence 556777777899999999987654
No 231
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=48.76 E-value=34 Score=19.10 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=29.9
Q ss_pred cCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 16 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 16 ~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
.+++.+++| ...+.+|......+. .+.+.. ..|..++++.-+.
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~-~~~~~~~~~g~~l~l~~~~~ 94 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALW-EFQESCEKRGTILLLSGVSD 94 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHH-HHHHHHHHHTCEEEEESCCH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHH-HHHHHHHHCCCEEEEEcCCH
Confidence 568889999 788899998666554 444444 3577777776544
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.34 E-value=52 Score=22.09 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=23.2
Q ss_pred HHHHhcCCCEEEEecCCCCCCHHH-----------HHHHHHHHHhhhc-CCcEEEEEec
Q psy1506 11 FEAVYKNADIYLLDDPLSAVDMHV-----------GKHLFEDCISGFL-KDKTRILVTH 57 (85)
Q Consensus 11 aral~~~p~illlDEP~~~LD~~~-----------~~~i~~~~~~~~~-~~~tvi~vtH 57 (85)
...+... +++++||-.+-..... .++.+..+..... .+.+++++++
T Consensus 177 ~~~l~~~-~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 177 ARAMLQH-RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHC-SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHhhC-CEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 3344443 4999999766432211 1223333322222 3788888877
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=48.02 E-value=31 Score=25.63 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCH------HHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAVDM------HVGKHLFEDCISGF---L--KDKTRILVTHQLQYL 62 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~LD~------~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~ 62 (85)
+..+..+....|.++++||+...+.. .....+...++... . .+..++.+||+++.+
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 34455566678999999999554421 11223333333221 1 245777788876544
No 234
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.97 E-value=66 Score=22.26 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC----------CHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAV----------DMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL 62 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~L----------D~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~ 62 (85)
|-.+..|-...|.|+++||--+-. |.. ....+..++... . .+..+|.+|++++.+
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~-~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADRE-IQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTH-HHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchH-HHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 456677777899999999986533 222 223333333332 1 245788889877654
No 235
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=47.95 E-value=33 Score=20.07 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=14.4
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHH
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDC 42 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~ 42 (85)
..+.+++++||...-++......++..+
T Consensus 160 ~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 160 LSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp GGGCSEEEETTC-------CHHHHHHHH
T ss_pred hhcccEEEEECchhhccCCcHHHHHHHH
Confidence 3566899999999888765455554443
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.82 E-value=0.13 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=20.7
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~ 28 (85)
++||+|++.+++|+.++|++ +|++..
T Consensus 147 ~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 147 DGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred hCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 36888999999999999887 577654
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.64 E-value=59 Score=22.49 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEecCCCC----------CCHHHHHHHHHHHHhhhc-----CCcEEEEEecCcchh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSA----------VDMHVGKHLFEDCISGFL-----KDKTRILVTHQLQYL 62 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~----------LD~~~~~~i~~~~~~~~~-----~~~tvi~vtH~~~~~ 62 (85)
|..+..|-...|.|+++||--+- -+.. ....+..++.... .+..+|.+|++++.+
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~-~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDRE-VQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHH-HHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchH-HHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 45666677788999999995321 1222 2223333333321 234677788877654
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=47.59 E-value=14 Score=26.33 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=27.4
Q ss_pred hhHHHHHHHHh-cCCC-EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 5 SSCQLCFEAVY-KNAD-IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 5 ~~~~~laral~-~~p~-illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
+|++.+++++. ..|. ++|..+|++|.|.-. ....+.. .-+.+.+++||
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al~---~ak~f~~--~~~itgvIlTK 447 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS---QAKLFHE--AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH---HHHHHHH--HTCCSEEEEEC
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHHH---HHHHHHh--hcCCCEEEEEc
Confidence 35667777664 4463 555566888865432 1222211 13678899999
No 239
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=47.21 E-value=34 Score=18.70 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=30.9
Q ss_pred cCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+|+.+++| ...+.+|......+.. +.+...+|..++++.-+..
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~-~~~~~~~g~~l~l~~~~~~ 88 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQR-FVKRLPEGCELRVCNVEFQ 88 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHH-HHHHCCTTCEEEEECCCHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHH-HHHHHHCCCEEEEecCCHH
Confidence 578899999 8889999987666554 4454434777777765543
No 240
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=46.85 E-value=9.3 Score=24.90 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHhcC-CCEEEEecCCC
Q psy1506 2 TGKSSCQLCFEAVYKN-ADIYLLDDPLS 28 (85)
Q Consensus 2 ~g~~~~~~laral~~~-p~illlDEP~~ 28 (85)
+|..+.-++..||-.. ...|+.||.++
T Consensus 283 ~G~~Ka~Ai~~al~g~~~~~LitDe~aA 310 (315)
T 2w48_A 283 MGEEKYSGILGALHGRYINCLVTNRETA 310 (315)
T ss_dssp CCGGGHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred cChHhHHHHHHHHhCCCCCEEEECHHHH
Confidence 6877888887777655 57999998764
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=46.67 E-value=5.8 Score=26.81 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHh
Q psy1506 3 GKSSCQLCFEAVY 15 (85)
Q Consensus 3 g~~~~~~laral~ 15 (85)
||+||+++|++++
T Consensus 317 G~~~r~ala~gli 329 (358)
T 2rcn_A 317 GCAIREAVENGAI 329 (358)
T ss_dssp TCHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998864
No 242
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=46.47 E-value=6.8 Score=24.94 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHhcC-CCEEEEecCCC
Q psy1506 2 TGKSSCQLCFEAVYKN-ADIYLLDDPLS 28 (85)
Q Consensus 2 ~g~~~~~~laral~~~-p~illlDEP~~ 28 (85)
+|..+.-++..||-.. ...|+.||.++
T Consensus 221 ~G~~Ka~AI~aal~g~~~~~LItDe~aA 248 (255)
T 2okg_A 221 GGSSKAEAIEAYFKKPRNTVLVTDEGAA 248 (255)
T ss_dssp CSGGGHHHHHHHTTSCCCEEEEEEHHHH
T ss_pred cCHHHHHHHHHHHhCCCCCEEEECHHHH
Confidence 6777777777777554 47899998764
No 243
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.47 E-value=7.8 Score=23.75 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=26.6
Q ss_pred CCCEEEEecCCCCCCHH----HHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 17 NADIYLLDDPLSAVDMH----VGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~----~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
...++++||.-.-+.+. ...+++..+.....++..+|++++..+.+
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLL 136 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGB
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHH
Confidence 37799999976543211 11123333222233577899999986554
No 244
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=46.19 E-value=52 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
..+++++|-|-++++....+.+ . .... ..+++++.++..+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l----~-~l~p-~givyvsc~p~tl 392 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRL----N-REKP-GVIVYVSCNPETF 392 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHH----H-HHCC-SEEEEEESCHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHH----H-hcCC-CcEEEEECChHHH
Confidence 5789999999999987533332 1 2233 4678888877654
No 245
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=44.98 E-value=27 Score=22.70 Aligned_cols=10 Identities=10% Similarity=0.065 Sum_probs=5.4
Q ss_pred CCEEEEecCC
Q psy1506 18 ADIYLLDDPL 27 (85)
Q Consensus 18 p~illlDEP~ 27 (85)
.+++++||+-
T Consensus 83 ~kvviIdead 92 (305)
T 2gno_A 83 RKYVIVHDCE 92 (305)
T ss_dssp SEEEEETTGG
T ss_pred ceEEEeccHH
Confidence 3566666653
No 246
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=44.51 E-value=50 Score=21.32 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCEEEEecCCCCCC-----HH---------------HHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 18 ADIYLLDDPLSAVD-----MH---------------VGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 18 p~illlDEP~~~LD-----~~---------------~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-+++++|=|.++.. +. ....++..+.+..+.|..++++|..
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 47999999988753 21 1134555544555566677777653
No 247
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=44.11 E-value=36 Score=18.05 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=24.6
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-.+|+++++|-...+.|.. .+.+.+.+ ...+..+|++|.
T Consensus 44 ~~~~dlii~d~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~ 82 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNGI---QVLETLRK-RQYSGIIIIVSA 82 (134)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHH-TTCCSEEEEEEC
T ss_pred hcCCCEEEEecCCCCCChH---HHHHHHHh-cCCCCeEEEEeC
Confidence 3689999999988887753 34444333 233455666554
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=43.58 E-value=19 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.4
Q ss_pred cCCCEEEEecCCCCC
Q psy1506 16 KNADIYLLDDPLSAV 30 (85)
Q Consensus 16 ~~p~illlDEP~~~L 30 (85)
.+++++++|..++-.
T Consensus 203 ~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTF 217 (322)
T ss_dssp CEEEEEEEECSSHHH
T ss_pred cCccEEEEECcHHHH
Confidence 458899999877543
No 249
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=43.28 E-value=41 Score=20.71 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCchhHHHHHHHHhcC-------------CC-EEEEecCCCC
Q psy1506 2 TGKSSCQLCFEAVYKN-------------AD-IYLLDDPLSA 29 (85)
Q Consensus 2 ~g~~~~~~laral~~~-------------p~-illlDEP~~~ 29 (85)
+|..++-++.+++-.+ |+ ++++||..++
T Consensus 198 ~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~~~~D~~Aa~ 239 (242)
T 2bkx_A 198 SGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAAS 239 (242)
T ss_dssp CSGGGHHHHHHHHHTCCCTTSGGGGGGGCSSEEEEEETTTTT
T ss_pred eChHHHHHHHHHHcCCCCCcccHHHhccCCCEEEEEchHHhc
Confidence 6888888888887653 23 4667776654
No 250
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=43.22 E-value=23 Score=22.32 Aligned_cols=41 Identities=29% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCEEEEecCCCCCCH----------------HHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDM----------------HVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~----------------~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..+++++|=|.+++-. .....++....+..+.|..++++|.
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 4589999999998632 1124555555555566667777664
No 251
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=42.02 E-value=53 Score=19.40 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh--hhcCCcEEEEEecCcc
Q psy1506 18 ADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQ 60 (85)
Q Consensus 18 p~illlDEP~~~LD~~~~~~i~~~~~~--~~~~~~tvi~vtH~~~ 60 (85)
+++-..|+-+.+-|+.. +.+.+.. ...++.++++|+|++.
T Consensus 72 ~~~~~~~~L~~~~~~~~---~~~~l~~~~~~~~~~~vllVgH~P~ 113 (172)
T 3f2i_A 72 CQLEESNHLAPNGNIFN---WLDYWLKPKNFPENAQIAIVGHEPC 113 (172)
T ss_dssp SCEEECGGGSTTCCHHH---HHHHTHHHHCCCTTCEEEEEECTTH
T ss_pred CCeEECcccCCccCHHH---HHHHHHHhccCCCCCEEEEEeCChH
Confidence 44555555445555432 3332221 1134679999999864
No 252
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=41.99 E-value=10 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCC
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~ 28 (85)
+-.+..+....|.++++||.-.
T Consensus 93 ~~~~~~a~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 93 RDLFETAKKQAPSIIFIDEIDA 114 (268)
T ss_dssp STTHHHHHHSCSCEEEESCGGG
T ss_pred HHHHHHHHhcCCeEEEEeChhh
Confidence 3445566667899999999843
No 253
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=41.69 E-value=60 Score=20.01 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=31.8
Q ss_pred chhHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEEecCc
Q psy1506 4 KSSCQLCFEAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDKTRILVTHQL 59 (85)
Q Consensus 4 ~~~~~~laral~---~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~tvi~vtH~~ 59 (85)
+...-.+.+++. .+++++|+--+.+.+... ...+++.+..... .+.++|+++|..
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 444455666663 888877766555566554 3344444333322 257889998843
No 254
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=41.68 E-value=44 Score=19.90 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=19.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 19 ~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..+|.| +|.++...+.+.+.+..........|++||.
T Consensus 36 ~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 72 (233)
T 3q6v_A 36 GITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNY 72 (233)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSS
T ss_pred eEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 456666 3444544455544432222345577888984
No 255
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=41.09 E-value=49 Score=20.28 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHhc
Q psy1506 2 TGKSSCQLCFEAVYK 16 (85)
Q Consensus 2 ~g~~~~~~laral~~ 16 (85)
+|..++-++.+++-.
T Consensus 191 ~G~~Ka~ai~~al~g 205 (234)
T 2ri0_A 191 FGEEKAEAVAAMVKG 205 (234)
T ss_dssp CSGGGHHHHHHHHHS
T ss_pred eChHHHHHHHHHHcC
Confidence 688888888888763
No 256
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=40.56 E-value=17 Score=21.32 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=22.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+-+++++||...-+|......+ ..+.....++..+++.|
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l-~~i~~~~~~~~~~l~~S 184 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIM-EDIILTLPKNRQILLYS 184 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHH-HHHHHHSCTTCEEEEEE
T ss_pred ccCCEEEEEChHHhHhhCcHHHH-HHHHHhCCccceEEEEE
Confidence 45689999999877765433333 34444444344444433
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=40.54 E-value=66 Score=20.10 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCC--------CHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 17 NADIYLLDDPLSAV--------DMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 17 ~p~illlDEP~~~L--------D~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
++.++++||.-.-. +......++.. +.....+..+|++++.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~-l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV-MENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHH-HHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHH-HhcCCCCEEEEEeCCh
Confidence 67899999986432 44433444332 3333334567777753
No 258
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=40.51 E-value=47 Score=20.55 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=12.1
Q ss_pred HHHHHhcCCCEEEEecC
Q psy1506 10 CFEAVYKNADIYLLDDP 26 (85)
Q Consensus 10 laral~~~p~illlDEP 26 (85)
+..+...++.++++||.
T Consensus 117 ~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp HHHHHTSSEEEEEECCH
T ss_pred HHHHHhcCCcEEEEECh
Confidence 33444467899999995
No 259
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=40.39 E-value=60 Score=19.61 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=25.8
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~tvi~vtH 57 (85)
..+|+++|+..+.+.++..... .+..+..... ...++++++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~-~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHK-ATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHH-HHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHH-HHHHHHHHhhhhccceEEEEEeC
Confidence 3578999999998888775433 3334333221 1247777777
No 260
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=38.46 E-value=28 Score=21.91 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.0
Q ss_pred cCCCEEEEecCCCC
Q psy1506 16 KNADIYLLDDPLSA 29 (85)
Q Consensus 16 ~~p~illlDEP~~~ 29 (85)
.+.++++|||....
T Consensus 102 ~~~kIiiLDEad~~ 115 (212)
T 1tue_A 102 TDTKVAMLDDATTT 115 (212)
T ss_dssp TTCSSEEEEEECHH
T ss_pred CCCCEEEEECCCch
Confidence 36789999998743
No 261
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=38.25 E-value=51 Score=18.13 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=27.8
Q ss_pred CCCEEEEe-cCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 17 NADIYLLD-DPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 17 ~p~illlD-EP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
+++.+++| ...+.+|......+... .+.. ..|..++++.-..
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~-~~~~~~~g~~l~l~~~~~ 90 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQL-RTELLRRGIVFAMARVKQ 90 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHH-HHHHHTTTEEEEEECCSS
T ss_pred CceEEEEECCCCChhhHHHHHHHHHH-HHHHHHCCCEEEEEcCCH
Confidence 46788889 77888898766655543 4444 4577777765544
No 262
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=37.61 E-value=54 Score=18.27 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCCEEEEe-cCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 17 NADIYLLD-DPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 17 ~p~illlD-EP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
+++.+++| ...+.+|......+.. +.+.. ..|..+.++.-+.
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~-~~~~~~~~g~~l~l~~~~~ 106 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAG-IVKEYGDVGIYVYLAGCSA 106 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHH-HHHHHHTTTCEEEEESCCH
T ss_pred CceEEEEECCCCccccHHHHHHHHH-HHHHHHHCCCEEEEEeCCH
Confidence 67889999 7889999987666654 44444 4577777776544
No 263
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=37.35 E-value=56 Score=20.39 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=20.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 20 illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
.+|.|= +.++...+++++.+.+......+-|+.||.
T Consensus 86 ~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~ 121 (270)
T 4eyb_A 86 VLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHA 121 (270)
T ss_dssp EEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred EEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 455553 345655666766544333334566888884
No 264
>3izx_B Capsid protein VP1; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3cnf_A 3iz3_B 3j17_B*
Probab=37.29 E-value=17 Score=28.71 Aligned_cols=27 Identities=11% Similarity=-0.102 Sum_probs=23.3
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAV 30 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~L 30 (85)
++||+.|+.++..++.+|++ ++|..|+
T Consensus 1048 ~e~~~~Rl~vgl~mI~n~r~---ar~~~Gv 1074 (1333)
T 3izx_B 1048 DELQLRRLSVGLRLITNPRI---ARRFNGV 1074 (1333)
T ss_dssp CTTHHHHHHHHHHHHHCTTS---CCCBCCE
T ss_pred CHHHHHHHHHHHHHhcCHhh---hhhccce
Confidence 57999999999999999987 4777776
No 265
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=36.71 E-value=83 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=14.9
Q ss_pred HHHHHHhcCCCEEEEecCCC
Q psy1506 9 LCFEAVYKNADIYLLDDPLS 28 (85)
Q Consensus 9 ~laral~~~p~illlDEP~~ 28 (85)
.+..+-..+|.++++||.-+
T Consensus 102 ~f~~a~~~~~~vl~iDEid~ 121 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDA 121 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGG
T ss_pred HHHHHHhcCCeEEEechhhh
Confidence 44555567889999999764
No 266
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=36.45 E-value=58 Score=18.33 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEec
Q psy1506 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTH 57 (85)
Q Consensus 13 al~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH 57 (85)
.--.+|+++++|==..++|-- ++.+.+.... .....||++|-
T Consensus 53 ~~~~~~DlillD~~MP~mdG~---el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 53 LKKGDFDFVVTDWNMPGMQGI---DLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTCCEEEEES
T ss_pred HHhCCCCEEEEcCCCCCCCHH---HHHHHHHhCCCCCCCeEEEEEC
Confidence 334689999999999999853 3444443322 23445565553
No 267
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=36.44 E-value=51 Score=17.65 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=22.9
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.- .+...+.. ......+|++|.
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~-~~~~~~ii~~s~ 80 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRE-RWPETVRIIITG 80 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHH-HCTTSEEEEEES
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHH-hCCCCcEEEEeC
Confidence 3579999999888777742 34444332 223445555543
No 268
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=36.41 E-value=52 Score=17.78 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=24.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|-...+.|.. .+.+.+.+ ...+..+|++|..
T Consensus 48 ~~~dlvllD~~lp~~~g~---~l~~~l~~-~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDGI---ELVDNILK-LYPDCSVIFMSGY 86 (141)
T ss_dssp SCCSEEEEESCCSSSCHH---HHHHHHHH-HCTTCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHh-hCCCCcEEEEeCC
Confidence 569999999888777742 34444332 2344566666543
No 269
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.32 E-value=46 Score=17.14 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=23.0
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+.+.+.+ ...+..+|++|.
T Consensus 45 ~~~~dlil~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~ 83 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNGI---DAIKEIMK-IDPNAKIIVCSA 83 (120)
T ss_dssp HHCCSEEEEECSCGGGCHH---HHHHHHHH-HCTTCCEEEEEC
T ss_pred hcCCCEEEEeCCCCCCcHH---HHHHHHHh-hCCCCeEEEEeC
Confidence 3579999999887776642 34444332 223445555554
No 270
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=36.16 E-value=27 Score=22.56 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=23.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+.+++++||...-++.......+..+......+..+++.|
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 46678999999987774223333334444333344444443
No 271
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=35.85 E-value=52 Score=17.58 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=23.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|=-..+.|.- .+.+.+.+.......+|++|.
T Consensus 51 ~~~dlvllD~~mp~~~G~---~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGL---LSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHHSCCCSCEEEEES
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHhhcCCCCCEEEEEC
Confidence 579999999888777753 344443322222345555554
No 272
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.69 E-value=20 Score=22.51 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=22.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+++++++||.-. ++......+.. .++....+..+|+++++..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~L~~-~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEADA-LTADAQAALRR-TMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETGGG-SCHHHHHTTGG-GTSSSSSSEEEEEEESCGG
T ss_pred CCceEEEEeCCCc-CCHHHHHHHHH-HHHhcCCCCeEEEEeCChh
Confidence 4578999999643 44443332221 1221123445666776654
No 273
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.09 E-value=57 Score=17.77 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=24.5
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.. .+++.+.+ ...+..+|++|..
T Consensus 64 ~~~~dlii~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTGL---EVLEWIRS-EKLETKVVVVTTF 103 (150)
T ss_dssp TSCCSEEEECSSCSSSCHH---HHHHHHHH-TTCSCEEEEEESC
T ss_pred ccCCCEEEEeCCCCCCcHH---HHHHHHHH-hCCCCeEEEEeCC
Confidence 3679999999888777643 34444333 2334556666553
No 274
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=34.16 E-value=54 Score=17.25 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=22.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--..+.|.- .+.+.+.+.......+|++|.
T Consensus 47 ~~~dlvllD~~l~~~~g~---~~~~~l~~~~~~~~~ii~ls~ 85 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDGL---AVLERIRAGFEHQPNVIMLTA 85 (130)
T ss_dssp HCCSEEEEESCCSSSCHH---HHHHHHHHHCSSCCEEEEEEE
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHhcCCCCCcEEEEec
Confidence 579999999888777642 344443332223444555443
No 275
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.81 E-value=58 Score=17.47 Aligned_cols=38 Identities=18% Similarity=0.063 Sum_probs=22.8
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+++.+... . ...+|++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~l~~~l~~~-~-~~~ii~ls~ 83 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDGW---TLCKKIRNV-T-TCPIVYMTY 83 (136)
T ss_dssp HCCCSEEEEESEETTEEHH---HHHHHHHTT-C-CCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHccC-C-CCCEEEEEc
Confidence 3579999999877776642 344443322 2 445555554
No 276
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=33.75 E-value=57 Score=17.43 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=23.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+.+.+.+ ...+..+|++|-.
T Consensus 48 ~~~dlvi~d~~l~~~~g~---~~~~~l~~-~~~~~~ii~ls~~ 86 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGM---DILREIKK-ITPHMAVIILTGH 86 (143)
T ss_dssp TTCCEEEEESCCSSSCHH---HHHHHHHH-HCTTCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHH-hCCCCeEEEEECC
Confidence 589999999888877653 34444332 2344556655543
No 277
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=33.72 E-value=1.1e+02 Score=20.86 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=8.2
Q ss_pred CcEEEEEec
Q psy1506 49 DKTRILVTH 57 (85)
Q Consensus 49 ~~tvi~vtH 57 (85)
+.++|+++|
T Consensus 350 ~v~vi~lsq 358 (444)
T 3bgw_A 350 DVVVIALSQ 358 (444)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEec
Confidence 889999998
No 278
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=33.62 E-value=94 Score=19.87 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-----------CCcEEEEEecC
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFL-----------KDKTRILVTHQ 58 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-----------~~~tvi~vtH~ 58 (85)
+..++++||.- .+.......++.. ++... .+..+|.+|+.
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~-l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRA-IQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHH-HHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHH-HhcCEeeecCCcccccCCeEEEEecCc
Confidence 46799999965 4566555655544 33221 23567777775
No 279
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=33.21 E-value=58 Score=17.30 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=24.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+.+.+.+ ...+..+|++|..
T Consensus 48 ~~~dlvilD~~lp~~~g~---~~~~~l~~-~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTGL---EVLAEIRK-KHLNIKVIIVTTF 86 (133)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHH-TTCSCEEEEEESC
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHH-HCCCCcEEEEecC
Confidence 579999999877777642 34444332 2234566666553
No 280
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=33.19 E-value=97 Score=21.05 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=31.9
Q ss_pred chhHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 4 KSSCQLCFEAVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 4 ~~~~~~laral~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
|.+-...+...+.+++++++..... ++... ...+.+. +. ..+..++++.+..+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~-l~--~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKI-LY--RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHH-HT--TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHH-HH--HcCCCEEEEEECcc
Confidence 6677777888888999777665543 45553 3334332 22 24667777777544
No 281
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=32.41 E-value=64 Score=17.55 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=23.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+++.+.+. ...+..+|++|..
T Consensus 58 ~~~dliilD~~l~~~~g~---~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMTGI---DILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp TCBEEEEECSBCSSSBHH---HHHHHHHHSTTTTTSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 579999999888877643 344444332 2234455555543
No 282
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.39 E-value=14 Score=22.37 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=22.8
Q ss_pred cCCCEEEEecCCCCCCHH-HHHHHHHHHHhhhcCCc-EEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMH-VGKHLFEDCISGFLKDK-TRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~-~~~~i~~~~~~~~~~~~-tvi~vtH 57 (85)
.+-+++++||...-++.. .... +..+.....++. .++++.-
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~-~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQ-INWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHH-HHHHHHHSCSSCEEEEEESC
T ss_pred ccCCEEEeCCchHhhcCcchHHH-HHHHHHhCCCCCeEEEEEec
Confidence 456799999998766653 2333 334444444344 4444433
No 283
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.11 E-value=88 Score=19.06 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=22.2
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++|+|--..+.|. -.+++.+.+ .....+|++|-
T Consensus 79 ~~~~DlvllD~~lp~~~G---~~l~~~lr~--~~~~~iI~lt~ 116 (249)
T 3q9s_A 79 EDHPDLILLDLGLPDFDG---GDVVQRLRK--NSALPIIVLTA 116 (249)
T ss_dssp HSCCSEEEEECCSCHHHH---HHHHHHHHT--TCCCCEEEEES
T ss_pred cCCCCEEEEcCCCCCCCH---HHHHHHHHc--CCCCCEEEEEC
Confidence 467999999987765543 344444332 23444555554
No 284
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=32.10 E-value=80 Score=18.61 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=18.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 20 IYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 20 illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
.+|.| +|..+...+.+.+.+ +... +....|++||.
T Consensus 34 ~iLiD---~G~~~~~~~~~~~~l-~~~~~~~i~~ii~TH~ 69 (227)
T 3iog_A 34 VTVVG---ATWTPDTARELHKLI-KRVSRKPVLEVINTNY 69 (227)
T ss_dssp EEEES---CCSSHHHHHHHHHHH-HTTCCSCEEEEECSSS
T ss_pred EEEEE---CCCChHHHHHHHHHH-HHhcCCCeEEEEeCCC
Confidence 55666 234444445555443 3322 34567889984
No 285
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=31.93 E-value=61 Score=18.33 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcc
Q psy1506 20 IYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQ 60 (85)
Q Consensus 20 illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~ 60 (85)
+++.|+-+..=|+.....+.+ +.... ..|..+.++|.+..
T Consensus 58 LLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~ 98 (124)
T 1x52_A 58 LLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHV 98 (124)
T ss_dssp EEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSH
T ss_pred EEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCc
Confidence 566666555557665666665 55544 35778888877543
No 286
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=31.55 E-value=56 Score=22.68 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=12.9
Q ss_pred cCCCEEEEecCCCCCC
Q psy1506 16 KNADIYLLDDPLSAVD 31 (85)
Q Consensus 16 ~~p~illlDEP~~~LD 31 (85)
...+.+++|=|.||.-
T Consensus 174 ~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEG 189 (456)
T ss_dssp TCEEEEEEECCCCCGG
T ss_pred ccCCEEEECCCCCCcc
Confidence 3468999999998863
No 287
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=31.52 E-value=14 Score=21.77 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=22.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+-+++++||...-+|......+ ..+......+..+++.|
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~-~~i~~~~~~~~~~i~~S 182 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEV-EALLSATPPSRQTLLFS 182 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHH-HHHHHTSCTTSEEEEEC
T ss_pred hhceEEEEEChhHhhccchHHHH-HHHHHhCCccCeEEEEE
Confidence 45689999999865554333333 33444443444444433
No 288
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.50 E-value=70 Score=18.30 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=23.3
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|=-..+.|.- .+...+.. ...+..+|++|..
T Consensus 49 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~-~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 49 AEKFEFITVXLHLGNDSGL---SLIAPLCD-LQPDARILVLTGY 88 (184)
T ss_dssp TSCCSEEEECSEETTEESH---HHHHHHHH-HCTTCEEEEEESS
T ss_pred hCCCCEEEEeccCCCccHH---HHHHHHHh-cCCCCCEEEEeCC
Confidence 3579999999777666542 33344332 2334556665543
No 289
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.21 E-value=89 Score=20.05 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=25.0
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
.+++++++||.- .+.......+.. .++....+..++++++...
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~-~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRR-VIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHH-HHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHH-HHhcCCCCeEEEEEecCcc
Confidence 357899999975 344444444443 3444334556667776554
No 290
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.96 E-value=63 Score=17.07 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=23.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 18 p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
|+++++|--..+.|.. .+.+.+.+.......+|++|..
T Consensus 53 ~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 53 IGLMITDLRMQPESGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp EEEEEECSCCSSSCHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred CcEEEEeccCCCCCHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 8999999888877753 3444433221234566666654
No 291
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.96 E-value=1.5e+02 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=15.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHH
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFED 41 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~ 41 (85)
.+.+++|||.- .+++.....+++.
T Consensus 579 ~~~vl~lDEi~-~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 579 PYSVVLLDAIE-KAHPDVFNILLQV 602 (758)
T ss_dssp SSSEEEEECGG-GSCHHHHHHHHHH
T ss_pred CCeEEEEeCcc-ccCHHHHHHHHHH
Confidence 45799999984 4566655555543
No 292
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=30.93 E-value=65 Score=17.18 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=22.5
Q ss_pred cCCCEEEEecCCC-CCCHHHHHHHHHHHHhh-hcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLS-AVDMHVGKHLFEDCISG-FLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~-~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH 57 (85)
..|+++|+|--.. +.| ...+++.+.+. ...+..+|++|.
T Consensus 49 ~~~dlvi~D~~l~~~~~---g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKE---GLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSSHHH---HHHHHHHHHHSGGGTTCCEEEEES
T ss_pred CCCcEEEEeCCCCCCCc---HHHHHHHHHhCcccCCCCEEEEeC
Confidence 5699999997766 444 33455544331 233455555554
No 293
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.88 E-value=68 Score=17.42 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=24.5
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-.+|+++++|--..+.|.. .+++.+.+ ......+|++|..
T Consensus 59 ~~~~dlii~d~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~~ 98 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDGA---QVAAAVRS-YELPTRVLLISAH 98 (152)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHH-TTCSCEEEEEESC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHh-cCCCCeEEEEEcc
Confidence 3689999999888777742 34444332 2334556665543
No 294
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=30.76 E-value=15 Score=22.02 Aligned_cols=26 Identities=4% Similarity=-0.167 Sum_probs=18.4
Q ss_pred chhHHHHHHHHhc------------CCCEEEEecCCCC
Q psy1506 4 KSSCQLCFEAVYK------------NADIYLLDDPLSA 29 (85)
Q Consensus 4 ~~~~~~laral~~------------~p~illlDEP~~~ 29 (85)
++||-.|-+.|-. ..++|++|+.|..
T Consensus 24 ~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~ 61 (159)
T 1y9j_A 24 ERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQD 61 (159)
T ss_dssp HHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHH
T ss_pred HHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHH
Confidence 4677778777753 3679999976543
No 295
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.74 E-value=65 Score=17.13 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=26.6
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecCc
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQL 59 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~~ 59 (85)
-.+|+++++|--..+.|.. .+++.+.+. ...+..+|++|...
T Consensus 48 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDGV---SLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHTSGGGTTCEEEEECTTH
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhCcccCCCCEEEEecCC
Confidence 4679999999888887753 344444332 23456677766543
No 296
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.71 E-value=79 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHHhcC-CCEEEEecCCCCCCHHHHHHHHH
Q psy1506 11 FEAVYKN-ADIYLLDDPLSAVDMHVGKHLFE 40 (85)
Q Consensus 11 aral~~~-p~illlDEP~~~LD~~~~~~i~~ 40 (85)
..++... +.+++|||.- .+++.....+++
T Consensus 653 ~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~ 682 (854)
T 1qvr_A 653 TEAVRRRPYSVILFDEIE-KAHPDVFNILLQ 682 (854)
T ss_dssp HHHHHHCSSEEEEESSGG-GSCHHHHHHHHH
T ss_pred HHHHHhCCCeEEEEeccc-ccCHHHHHHHHH
Confidence 3344434 4699999994 467765555543
No 297
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=30.24 E-value=62 Score=16.77 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.. .+.+.+.+ ......+|++|..
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~~ 84 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKV-IDENIRVIIMTAY 84 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHH-HCTTCEEEEEESS
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHH-hCCCCCEEEEEcc
Confidence 3579999999888777643 33344322 2334566666543
No 298
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=30.21 E-value=61 Score=16.69 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=23.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+.+.+.+ .....+|++|..
T Consensus 45 ~~~dlvi~d~~l~~~~g~---~~~~~l~~--~~~~~ii~~s~~ 82 (122)
T 1zgz_A 45 QSVDLILLDINLPDENGL---MLTRALRE--RSTVGIILVTGR 82 (122)
T ss_dssp SCCSEEEEESCCSSSCHH---HHHHHHHT--TCCCEEEEEESS
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHh--cCCCCEEEEECC
Confidence 579999999888777642 34444332 234566666553
No 299
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=30.13 E-value=65 Score=17.17 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=22.0
Q ss_pred cCCCEEEEecCCCC--CCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSA--VDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~--LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+ .|. ..+++.+.+. ..+..+|++|..
T Consensus 49 ~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~-~~~~~ii~~s~~ 89 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSG---IELLETLVKR-GFHLPTIVMASS 89 (136)
T ss_dssp TTEEEEEEETTGGGBTTHH---HHHHHHHHHT-TCCCCEEEEESS
T ss_pred cCCCEEEEeCcCCCCCccH---HHHHHHHHhC-CCCCCEEEEEcC
Confidence 45899999977665 543 3344443332 234455555543
No 300
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.12 E-value=64 Score=16.88 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
.+|+++++|-...+.|. ..+++.+.+ ......+|++|.
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~-~~~~~~ii~~t~ 87 (130)
T 3eod_A 50 FTPDLMICDIAMPRMNG---LKLLEHIRN-RGDQTPVLVISA 87 (130)
T ss_dssp CCCSEEEECCC-----C---HHHHHHHHH-TTCCCCEEEEEC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHh-cCCCCCEEEEEc
Confidence 56999999977666553 233344333 223444555544
No 301
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.99 E-value=71 Score=17.37 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=24.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|-...+.|.. .+++.+.. ......+|++|..
T Consensus 50 ~~~dlvi~d~~l~~~~g~---~~~~~l~~-~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGGE---VFLEQVAK-SYPDIERVVISGY 88 (154)
T ss_dssp SCCSEEEEESSCSSSCHH---HHHHHHHH-HCTTSEEEEEECG
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHH-hCCCCcEEEEecC
Confidence 579999999988877753 34444332 2335566666554
No 302
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.96 E-value=29 Score=23.27 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=25.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecCcch
Q psy1506 18 ADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQLQY 61 (85)
Q Consensus 18 p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~~~~ 61 (85)
|-++++||..+-+....-. .++.. ...|..++++++++..
T Consensus 280 ~~~~~lDE~~~l~~~~~l~----~~~~~~R~~g~~~~~~~Qs~~q 320 (437)
T 1e9r_A 280 RLWLFIDELASLEKLASLA----DALTKGRKAGLRVVAGLQSTSQ 320 (437)
T ss_dssp CEEEEESCGGGSCBCSSHH----HHHHHCTTTTEEEEEEESCHHH
T ss_pred cEEEEEEcccccccchhHH----HHHHHHhccCCEEEEEecCHHH
Confidence 4589999998865422122 22333 3358899999998753
No 303
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=29.91 E-value=82 Score=18.06 Aligned_cols=38 Identities=5% Similarity=-0.100 Sum_probs=22.4
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|-...+.|. . +... ++.......+|++|.
T Consensus 50 ~~~~dlvl~D~~mp~~~g---~-l~~~-~~~~~~~~~ii~lt~ 87 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHHD---E-IAAL-LAAGTPRTTLVALVE 87 (196)
T ss_dssp SSCCSEEEEECCSSTHHH---H-HHHH-HHHSCTTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCccch---H-HHHH-HhccCCCCCEEEEEc
Confidence 357999999988877652 1 3333 222224456666654
No 304
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.76 E-value=61 Score=16.52 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=22.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|-...+.|.. .+.+.+.+ ...+..++++|.
T Consensus 44 ~~~dlvl~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~ 81 (116)
T 3a10_A 44 GNYDLVILDIEMPGISGL---EVAGEIRK-KKKDAKIILLTA 81 (116)
T ss_dssp SCCSEEEECSCCSSSCHH---HHHHHHHH-HCTTCCEEEEES
T ss_pred CCCCEEEEECCCCCCCHH---HHHHHHHc-cCCCCeEEEEEC
Confidence 579999999888777643 34444332 223444555544
No 305
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=29.63 E-value=70 Score=17.17 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=23.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++|+|--..+.|. ..+++.+.. ......+|++|..
T Consensus 66 ~~~dlvi~D~~l~~~~g---~~~~~~l~~-~~~~~~ii~lt~~ 104 (146)
T 4dad_A 66 DAFDILMIDGAALDTAE---LAAIEKLSR-LHPGLTCLLVTTD 104 (146)
T ss_dssp TTCSEEEEECTTCCHHH---HHHHHHHHH-HCTTCEEEEEESC
T ss_pred CCCCEEEEeCCCCCccH---HHHHHHHHH-hCCCCcEEEEeCC
Confidence 68999999987776543 334444333 2344566666543
No 306
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=29.26 E-value=68 Score=16.89 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=23.2
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+...+.+. .....+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGI---EVCKQLRQQ-KLMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHT-TCCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHcC-CCCCCEEEEEC
Confidence 3579999999888877742 344443322 23344555543
No 307
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=29.20 E-value=89 Score=18.25 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=23.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--..+.|.. .+...+.. ...+..+|++|.
T Consensus 42 ~~~dlvllD~~lp~~~g~---~~~~~lr~-~~~~~~ii~lt~ 79 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY---EICRMIKE-TRPETWVILLTL 79 (220)
T ss_dssp SCCSEEEEESBCSSSBHH---HHHHHHHH-HCTTSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHh-cCCCCcEEEEEc
Confidence 789999999888777642 34444332 224455666554
No 308
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=29.16 E-value=75 Score=17.35 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=28.6
Q ss_pred hcCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 15 YKNADIYLLD-DPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
..+++.+++| ...+.+|......+.. +.+... +|..+.++.=.
T Consensus 49 ~~~~~~vvlDls~V~~iDSsGl~~L~~-~~~~~~~~g~~l~l~~~~ 93 (125)
T 2ka5_A 49 NKGYNKIFLVLSDVESIDSFSLGVIVN-ILKSISSSGGFFALVSPN 93 (125)
T ss_dssp TTTCCEEEEECTTCSCCCHHHHHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred hCCCCEEEEECCCCCEEcHHHHHHHHH-HHHHHHHcCCEEEEEeCC
Confidence 3467788888 7888999986665554 344433 47777776543
No 309
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=29.02 E-value=92 Score=18.30 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhh---hcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISG---FLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~---~~~~~tvi~vtH 57 (85)
.|+++|+|=-..+.|.. .+++.+.+. ......+|++|-
T Consensus 119 ~~dlillD~~lp~~~G~---el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGY---EATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCHH---HHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCHH---HHHHHHHhhhhhcCCCCcEEEEEC
Confidence 79999999888777753 344443332 123455666554
No 310
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=28.92 E-value=75 Score=20.15 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 13 AVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 13 al~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
.--..|+++|+|=-.. ++|--. +.+.+.... +..||++|-..
T Consensus 201 ~~~~~~dlvl~D~~MPd~mdG~e---~~~~ir~~~--~~piI~lT~~~ 243 (286)
T 3n0r_A 201 VTRRTPGLVLADIQLADGSSGID---AVKDILGRM--DVPVIFITAFP 243 (286)
T ss_dssp HHHCCCSEEEEESCCTTSCCTTT---TTHHHHHHT--TCCEEEEESCG
T ss_pred HHhCCCCEEEEcCCCCCCCCHHH---HHHHHHhcC--CCCEEEEeCCH
Confidence 3346899999997555 454321 222222222 55666666543
No 311
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.57 E-value=74 Score=17.06 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=24.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~ 58 (85)
..|+++|+|--..+.|. ..+++.+.+. ...+..+|++|..
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 57999999988877764 2344444331 2234556665543
No 312
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.39 E-value=69 Score=16.67 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=24.6
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+++.+.+.. ..+..+|++|.
T Consensus 45 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSGL---ALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HSCCSEEEEESBCSSSBHH---HHHHHHHHSCCSSCCEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhhccCCCCEEEEEC
Confidence 3679999999888877643 3444433321 23456666654
No 313
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.33 E-value=72 Score=16.86 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=24.9
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.. .+++.+.+ ...+..+|++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGGL---EMLDRIKA-GGAKPYVIVISAF 88 (137)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHH-TTCCCEEEECCCC
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHh-cCCCCcEEEEecC
Confidence 3689999999888777643 34444332 2344566666654
No 314
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=28.30 E-value=69 Score=21.62 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=12.2
Q ss_pred CCCEEEEecCCCCCC
Q psy1506 17 NADIYLLDDPLSAVD 31 (85)
Q Consensus 17 ~p~illlDEP~~~LD 31 (85)
..+++++|=|.++..
T Consensus 315 ~fD~Vl~D~Pcsg~g 329 (429)
T 1sqg_A 315 QFDRILLDAPCSATG 329 (429)
T ss_dssp CEEEEEEECCCCCGG
T ss_pred CCCEEEEeCCCCccc
Confidence 358999999999863
No 315
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=28.01 E-value=1.2e+02 Score=19.28 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCEEEEe---cCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEE
Q psy1506 9 LCFEAVYKNADIYLLD---DPLSAVDMHVGKHLFEDCISGFL---KDKTRILV 55 (85)
Q Consensus 9 ~laral~~~p~illlD---EP~~~LD~~~~~~i~~~~~~~~~---~~~tvi~v 55 (85)
.+|..+-..|.++.++ ||....+.......++......+ ..+.|++-
T Consensus 125 ~ia~~~~~~~~vv~~~l~NEP~~~~~~~~~~~~~~~~~~~IR~~dp~~~i~v~ 177 (320)
T 3nco_A 125 QVAQAFKDYPDKLFFEIFNEPAQNLTPTKWNELYPKVLGEIRKTNPSRIVIID 177 (320)
T ss_dssp HHHHHHTTSCTTEEEECCSCCCTTSCHHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHHHHHcCCCceEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 4566777888866555 99988877655555555444332 34455444
No 316
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.98 E-value=79 Score=17.21 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=25.2
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++|+|--..+.|.. .++..+.. ...+..+|++|..
T Consensus 56 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDGP---TLLARIHQ-QYPSTTRILLTGD 95 (153)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHH-HCTTSEEEEECCC
T ss_pred cCCCCEEEEeCCCCcCcHH---HHHHHHHh-HCCCCeEEEEECC
Confidence 3679999999888877753 34444333 3345566666654
No 317
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=27.94 E-value=1e+02 Score=19.98 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=18.3
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHH
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFED 41 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~ 41 (85)
..+.+++++||...-.+......+...
T Consensus 123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~ 149 (494)
T 1wp9_A 123 LEDVSLIVFDEAHRAVGNYAYVFIARE 149 (494)
T ss_dssp TTSCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred hhhceEEEEECCcccCCCCcHHHHHHH
Confidence 356789999999988765444444433
No 318
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.85 E-value=75 Score=16.90 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.1
Q ss_pred cCCCEEEEecCCCCCCH
Q psy1506 16 KNADIYLLDDPLSAVDM 32 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~ 32 (85)
..|+++++|--..+.|.
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 57999999988877764
No 319
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.68 E-value=75 Score=16.86 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=23.3
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
..|+++++|--..+.|.. .+++.+.. ...+..+|++|
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKE-QTKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTT-SSSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHh-hCCCCCEEEEE
Confidence 479999999888777642 34444322 22345666666
No 320
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=27.27 E-value=85 Score=17.49 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=11.0
Q ss_pred CCcEEEEEecCcchh
Q psy1506 48 KDKTRILVTHQLQYL 62 (85)
Q Consensus 48 ~~~tvi~vtH~~~~~ 62 (85)
.+.+++++.|..+..
T Consensus 107 ~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 107 MGANLLLALNKMDLA 121 (165)
T ss_dssp TTCCEEEEEECHHHH
T ss_pred cCCCEEEEEEchHhc
Confidence 467888998876653
No 321
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=27.20 E-value=84 Score=17.27 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
+|+++|+|--..+.|.. .+++.+.+ ...+..+|++|.
T Consensus 83 ~~dliilD~~l~~~~g~---~~~~~lr~-~~~~~~ii~ls~ 119 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGI---TCLSNIME-FDKNARVIMISA 119 (157)
T ss_dssp GCCEEEECSSCSSSCHH---HHHHHHHH-HCTTCCEEEEES
T ss_pred CCCEEEEeccCCCccHH---HHHHHHHh-hCCCCcEEEEec
Confidence 78999999888877753 34444332 233444555554
No 322
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=27.07 E-value=75 Score=21.08 Aligned_cols=42 Identities=12% Similarity=-0.023 Sum_probs=24.5
Q ss_pred CCCEEEEecCCCCCCHHH-------HHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 17 NADIYLLDDPLSAVDMHV-------GKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~-------~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..+++++|-|..+..... ...++.......+.|..+++++..
T Consensus 289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 578999999987764421 223333334444455566666543
No 323
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=27.01 E-value=63 Score=21.39 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=25.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 25 DPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 25 EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
-|.+.++++...++.+.+.+.+.++ -=|+|+|--+.+
T Consensus 56 idS~~mt~~~w~~la~~I~~~~~~~-dG~VItHGTDTm 92 (326)
T 1nns_A 56 IGSQDMNDNVWLTLAKKINTDCDKT-DGFVITHGTDTM 92 (326)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHGGGC-SEEEEECCSSSH
T ss_pred CCcccCCHHHHHHHHHHHHHHhhcC-CcEEEEcCchhH
Confidence 5788888888888877665544444 678889965544
No 324
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=27.00 E-value=1.1e+02 Score=18.46 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=23.4
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.- .+++.+... ..+..+|++|.
T Consensus 65 ~~~~dlvllD~~lp~~~g~---~~~~~lr~~-~~~~~ii~lt~ 103 (250)
T 3r0j_A 65 ETRPDAVILDVXMPGMDGF---GVLRRLRAD-GIDAPALFLTA 103 (250)
T ss_dssp HHCCSEEEEESCCSSSCHH---HHHHHHHHT-TCCCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCCEEEEEC
Confidence 3689999999888877753 344443322 23445555554
No 325
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=26.82 E-value=99 Score=17.97 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=23.4
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.- .+.+.+.. ......+|++|.
T Consensus 49 ~~~~dlvllD~~lp~~~g~---~~~~~lr~-~~~~~~ii~ls~ 87 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNGL---ETLDKLRE-KSLSGRIVVFSV 87 (215)
T ss_dssp HHCCSEEEEETTSTTSCHH---HHHHHHHH-SCCCSEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCcHH---HHHHHHHH-hCCCCcEEEEEC
Confidence 3579999999888777742 34444332 223445555543
No 326
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.75 E-value=75 Score=16.54 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=22.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+.+.+.+ ...+..+|++|..
T Consensus 46 ~~~dlvi~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSGV---ELLRNLGD-LKINIPSIVITGH 84 (126)
T ss_dssp CCSEEEEEECCSTTSCHH---HHHHHHHH-TTCCCCEEEEECT
T ss_pred CCCCEEEEECCCCCCCHH---HHHHHHHh-cCCCCCEEEEECC
Confidence 468999999877777642 33444332 2234455555543
No 327
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=26.67 E-value=61 Score=20.97 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=22.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEE
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILV 55 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~-tvi~v 55 (85)
.+-+++++||...-++... ...+..+......+. .++++
T Consensus 162 ~~~~~vIiDEaH~~~~~~~-~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 162 SDCSLFIMDEADKMLSRDF-KTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp TTCCEEEEESHHHHSSHHH-HHHHHHHHTTSCSSCEEEEEE
T ss_pred ccCCEEEEeCchHhhhhch-HHHHHHHHHhCCcCceEEEEE
Confidence 4458999999998887753 333344444333343 34444
No 328
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.62 E-value=78 Score=16.72 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=24.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+.+.+... ...+..+|++|..
T Consensus 53 ~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDGF---SICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp TCCSEEEEETTCTTSCHH---HHHHHHHTSTTTTTSEEEEEESS
T ss_pred cCCCEEEEecccCCCcHH---HHHHHHHhCccccCCcEEEEeCC
Confidence 579999999888777642 344443332 2234566666654
No 329
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=26.52 E-value=75 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=24.0
Q ss_pred CCCEEEEecCCCCCCHHH-------HHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHV-------GKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~-------~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..+++++|-|..+.+... ...++......+..|..+++.+.
T Consensus 279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 568999999997765421 22333333444455555666554
No 330
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=26.40 E-value=77 Score=16.55 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=23.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
..|+++++|-...+.|. ..+++.+.+ ......+|++|...
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~-~~~~~~ii~~s~~~ 84 (135)
T 3eqz_A 45 NKQDIIILDLMMPDMDG---IEVIRHLAE-HKSPASLILISGYD 84 (135)
T ss_dssp CTTEEEEEECCTTTTHH---HHHHHHHHH-TTCCCEEEEEESSC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHh-CCCCCCEEEEEecc
Confidence 34999999988776653 334444332 23445666666543
No 331
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=26.39 E-value=91 Score=20.66 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh
Q psy1506 26 PLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL 62 (85)
Q Consensus 26 P~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~ 62 (85)
|.+.++++...++.+.+.+.+.+ +.-=|+|+|--+.+
T Consensus 58 dS~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTm 95 (331)
T 1agx_A 58 ASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTM 95 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGH
T ss_pred CcccCCHHHHHHHHHHHHHHhccCCCCEEEEecCcchH
Confidence 45556666667776665444443 46678899976554
No 332
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=26.26 E-value=79 Score=16.68 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=23.5
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+.+.+.+ ...+..+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~ 83 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHK-LRPGMKKIMVTG 83 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHH-HCTTSEEEEEES
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHh-hCCCCcEEEEec
Confidence 3579999999887777642 33443322 233455666554
No 333
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=26.13 E-value=81 Score=16.74 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=23.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|. ..+.+.+.+... .+..+|+++..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 46999999988777764 234444332221 34566666654
No 334
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=26.09 E-value=26 Score=22.50 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=21.3
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+-+++++||...-.+.......+..+......+..+++.|
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 46789999999865542222223333333333444444443
No 335
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=25.91 E-value=74 Score=16.85 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=20.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--..+.|.. .+++.+.+. .....+|++|-
T Consensus 58 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~ 95 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLGK---PGIVEARAL-WATVPLIAVSD 95 (135)
T ss_dssp CCCSEEEEEEETTGGGGS---TTHHHHHGG-GTTCCEEEEES
T ss_pred cCCCEEEEeCCCCCchHH---HHHHHHHhh-CCCCcEEEEeC
Confidence 569999999766655432 233333322 23445555554
No 336
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=25.81 E-value=85 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=26.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh
Q psy1506 25 DPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL 62 (85)
Q Consensus 25 EP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~ 62 (85)
-+.+.++++...++.+.+.+.+.+ +.-=|+|+|--+.+
T Consensus 60 idS~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTm 98 (327)
T 1o7j_A 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTV 98 (327)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTH
T ss_pred CCcccCCHHHHHHHHHHHHHHhccCCCCEEEEecCchhH
Confidence 478888888888887766555543 46778899965544
No 337
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.74 E-value=82 Score=16.69 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=24.9
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhh---hcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISG---FLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~---~~~~~tvi~vtH~ 58 (85)
..|+++|+|--..+.|.. .+++.+.+. ......+|++|..
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHHhhhhccCCCeEEEEeCC
Confidence 679999999888887753 344444332 2234566666543
No 338
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=25.58 E-value=1.1e+02 Score=18.29 Aligned_cols=30 Identities=0% Similarity=-0.276 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 27 LSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 27 ~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.++|++...+.+.+.+.....+|..+.+++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~s 59 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999877777654433345677666554
No 339
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=25.45 E-value=33 Score=22.61 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=19.0
Q ss_pred CCchhHHHHHHHHhc-C-CCEEEEecCCC
Q psy1506 2 TGKSSCQLCFEAVYK-N-ADIYLLDDPLS 28 (85)
Q Consensus 2 ~g~~~~~~laral~~-~-p~illlDEP~~ 28 (85)
+|..+.-++..||-. . ...++.||.++
T Consensus 308 ~G~~Ka~Ai~~al~g~~~~~~LitDe~aA 336 (345)
T 2o0m_A 308 GGKTKAKAIRAYMKNAPKQTWLITDEAAA 336 (345)
T ss_dssp CSGGGHHHHHHHHTTSCTTCEEEEEHHHH
T ss_pred cChHHHHHHHHHHhCCCCCeEEEECHHHH
Confidence 677777777777754 3 35888898764
No 340
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.37 E-value=49 Score=21.34 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=21.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59 (85)
Q Consensus 19 ~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~ 59 (85)
.++++||.-.-.+......++..+.... .+..+|++|++.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 3999999754321111122033333322 456788888865
No 341
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=25.31 E-value=48 Score=17.76 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=18.1
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSA 29 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~ 29 (85)
|+|.+.|+++|. ++++.++-+.-.|.++
T Consensus 60 ~s~e~rk~amaa-ils~~~vn~ca~~~ss 87 (99)
T 1qb5_D 60 MTAEMRKIAMAA-VLSGMRVNMCASPASS 87 (99)
T ss_dssp HHHHHHHHHHHH-HHHCCCEEEEECSSSS
T ss_pred hhHHHHHHHHHH-HHcCCeeeeeeCCCCC
Confidence 456777777764 4467777766666554
No 342
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.30 E-value=1e+02 Score=17.72 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=22.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--..+.|.- .+.+.+.. ...+..+|++|.
T Consensus 47 ~~~dlvl~D~~lp~~~g~---~~~~~l~~-~~~~~~ii~ls~ 84 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSGI---ELQEQLTA-ISDGIPIVFITA 84 (208)
T ss_dssp TSCEEEEEESCCSSSCHH---HHHHHHHH-TTCCCCEEEEES
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHh-cCCCCCEEEEeC
Confidence 468999999877777743 34444332 233455555554
No 343
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=25.15 E-value=32 Score=22.30 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=21.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+-+++++||...-++..........+......+..+++.|
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 207 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 207 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEE
Confidence 45789999998865542222222233333344444444443
No 344
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=25.06 E-value=96 Score=22.06 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
+.+++|.||. +-+|.... ..++.....+..+|++.-
T Consensus 279 ~~dvlIIDEa-sml~~~~~----~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 279 PYDLLIVDEV-SMMGDALM----LSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp SCSEEEECCG-GGCCHHHH----HHHHTTSCTTCEEEEEEC
T ss_pred cCCEEEEcCc-cCCCHHHH----HHHHHhCcCCCEEEEEec
Confidence 4689999997 46787532 333443445666777653
No 345
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.81 E-value=83 Score=16.41 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=24.1
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH 57 (85)
-.+|+++++|--..+.|.. .+++.+.+... ....+++++.
T Consensus 48 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDGL---DVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HTCCSEEEEESCBTTBCHH---HHHHHHHTTTCSSCCEEEEECC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHhcCccCCCeEEEEeC
Confidence 4689999999888887753 34444333222 2345555554
No 346
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.68 E-value=92 Score=16.87 Aligned_cols=39 Identities=13% Similarity=-0.017 Sum_probs=23.5
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+++.+... ..+..+|++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~ls~ 87 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGGI---EATRHIRQW-DGAARILIFTM 87 (153)
T ss_dssp TTCCSEEEECSCCSSSCHH---HHHHHHHHH-CTTCCEEEEES
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHh-CCCCeEEEEEC
Confidence 3579999999888777642 344443332 33445555554
No 347
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=24.56 E-value=85 Score=18.99 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=9.7
Q ss_pred CCcEEEEEecCc
Q psy1506 48 KDKTRILVTHQL 59 (85)
Q Consensus 48 ~~~tvi~vtH~~ 59 (85)
.+.++++|||..
T Consensus 173 ~~~~vlvVsHg~ 184 (237)
T 3r7a_A 173 GGGNVLVVVHGL 184 (237)
T ss_dssp TCEEEEEEECHH
T ss_pred CCCeEEEEcCHH
Confidence 467999999963
No 348
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=24.52 E-value=1.6e+02 Score=20.03 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=27.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 19 DIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 19 ~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
.+++.|+-+..-|+..++.+. .+.... ..|..+.+++.+.
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ivs~~~ 350 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWV-SLVEGVKEINCPVYIFSSLH 350 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHH-HHHHHHHHTTCCEEEECTTS
T ss_pred EEEEecccccCCChhHHHHHH-HHHHHHHhcCCEEEEECCCC
Confidence 489999999888887666655 444443 3577777777654
No 349
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=24.50 E-value=93 Score=19.24 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.8
Q ss_pred CCcEEEEEecCc
Q psy1506 48 KDKTRILVTHQL 59 (85)
Q Consensus 48 ~~~tvi~vtH~~ 59 (85)
.+.+|++|||..
T Consensus 184 ~~~~vlvVsHg~ 195 (264)
T 3mbk_A 184 KGNNILIVAHAS 195 (264)
T ss_dssp SCSEEEEEECTT
T ss_pred CCCeEEEEecHH
Confidence 467999999974
No 350
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.41 E-value=94 Score=16.88 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=23.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--..+.+.. .++..+... ..+..+|++|.
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~-~~~~pii~ls~ 83 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILAL-DPDLPMILVTG 83 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCCEEEEEC
Confidence 469999999888777643 344443322 33455665554
No 351
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=24.32 E-value=94 Score=16.83 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH 57 (85)
.|+++++|--..+.|.. .+.+.+.+.. .....+|++|.
T Consensus 61 ~~dlillD~~lp~~~g~---~l~~~l~~~~~~~~~piiils~ 99 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGR---EVLAEIKQNPDLKRIPVVVLTT 99 (149)
T ss_dssp CCSEEEECSCCSSSCHH---HHHHHHHHCTTTTTSCEEEEES
T ss_pred CCCEEEEeCCCCCCcHH---HHHHHHHhCcCcCCCeEEEEEC
Confidence 69999999888777743 3444433321 12344555443
No 352
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=24.25 E-value=90 Score=20.68 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=26.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh
Q psy1506 25 DPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL 62 (85)
Q Consensus 25 EP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~ 62 (85)
-+.+.+.++...++.+.+.+.+.+ +.-=|+|+|--+.+
T Consensus 60 idS~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTm 98 (332)
T 2wlt_A 60 IGSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTL 98 (332)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSH
T ss_pred CCcccCCHHHHHHHHHHHHHHhccCCCCEEEEecCchhH
Confidence 477888888888887766555543 46678899965543
No 353
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=24.25 E-value=1.2e+02 Score=17.91 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=22.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|=-..+.|. -.++..+......+..+|++|.
T Consensus 53 ~~~dlvllD~~mp~~~G---~~~~~~lr~~~~~~~~ii~lt~ 91 (225)
T 3klo_A 53 RSIQMLVIDYSRISDDV---LTDYSSFKHISCPDAKEVIINC 91 (225)
T ss_dssp GGCCEEEEEGGGCCHHH---HHHHHHHHHHHCTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHhhCCCCcEEEEEC
Confidence 56999999977766553 3344444331233455555544
No 354
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=24.20 E-value=1.1e+02 Score=22.99 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC------CHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506 7 CQLCFEAVYKNADIYLLDDPLSAV------DMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL 62 (85)
Q Consensus 7 ~~~laral~~~p~illlDEP~~~L------D~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~ 62 (85)
|-.+..|-.+.|.|+++||--+=. +....+.+...++... . .+..+|.+|++++.+
T Consensus 287 r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 445677777889999999965422 1112333444433322 1 244667778876543
No 355
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=24.20 E-value=88 Score=16.47 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=22.4
Q ss_pred cCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--.. +.|.. .+++.+... .+..+|++|..
T Consensus 53 ~~~dlii~d~~~~~~~~g~---~~~~~l~~~--~~~~ii~ls~~ 91 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDGV---ETAARLAAG--CNLPIIFITSS 91 (140)
T ss_dssp HCCSEEEEESSCCSSSCHH---HHHHHHHHH--SCCCEEEEECC
T ss_pred CCCCEEEEecCCCCCCCHH---HHHHHHHhC--CCCCEEEEecC
Confidence 5799999997775 56642 334443333 44555555543
No 356
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.02 E-value=87 Score=16.35 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=24.7
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~ 58 (85)
-.+|+++++|--..+.|.. .+.+.+.+.. ..+..+|++|..
T Consensus 45 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 4679999999888777653 3444433321 224556666553
No 357
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=23.97 E-value=1.6e+02 Score=19.41 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecC
Q psy1506 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQ 58 (85)
Q Consensus 1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~ 58 (85)
|+...-=++++.+|...|+++++=|- ..|.+ .+.+.+.+... ++..+|+++-.
T Consensus 169 MGR~aG~lA~~a~la~ga~~iliPE~--~~~~~---~~~~~i~~~~~~g~~~~iivvaEG 223 (319)
T 4a3s_A 169 MGRHAGDIALWAGLAGGAESILIPEA--DYDMH---EIIARLKRGHERGKKHSIIIVAEG 223 (319)
T ss_dssp CCTTCCHHHHHHHHHHTCSEEEBTTB--CCCHH---HHHHHHHHHHTTTCCCEEEEEETT
T ss_pred CCcchhHHHHHHHhccCCCEEEecCC--CCCHH---HHHHHHHHHHHcCCCceEEEEECC
Confidence 34444457889999999999988553 34543 33334333333 35678888753
No 358
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.92 E-value=1.2e+02 Score=17.73 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=24.1
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.- .+...+... ..+..+|++|..
T Consensus 44 ~~~~dlvllD~~l~~~~g~---~~~~~lr~~-~~~~~ii~ls~~ 83 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDGW---EILKSMRES-GVNTPVLMLTAL 83 (225)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHT-TCCCCEEEEESS
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCCEEEEeCC
Confidence 3679999999888777642 344443322 234555655543
No 359
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=23.70 E-value=27 Score=21.21 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=21.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.+-+++++||.-.-+|......+. .++.....+..+++.|
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~-~i~~~~~~~~~~i~~S 211 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIY-EIFQKLNTSIQVVLLS 211 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHH-HHHHHSCTTCEEEEEC
T ss_pred ccCcEEEECCchHhhccCcHHHHH-HHHHhCCCCCeEEEEE
Confidence 346899999988655543333333 3344444444444433
No 360
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.49 E-value=93 Score=16.50 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=11.0
Q ss_pred hcCCCEEEEecCCCCCCH
Q psy1506 15 YKNADIYLLDDPLSAVDM 32 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~ 32 (85)
-..|+++++|-...+.|.
T Consensus 44 ~~~~dlvi~D~~l~~~~g 61 (140)
T 3n53_A 44 HHHPDLVILDMDIIGENS 61 (140)
T ss_dssp HHCCSEEEEETTC-----
T ss_pred cCCCCEEEEeCCCCCCcH
Confidence 368999999987766553
No 361
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=23.44 E-value=1e+02 Score=22.02 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
+.+++++||.. -+|.... ..++.....+..+|++.-
T Consensus 262 ~~d~lIIDEAs-ml~~~~~----~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 262 HLDVLVVDEAS-MIDLPMM----SRLIDALPDHARVIFLGD 297 (608)
T ss_dssp SCSEEEECSGG-GCBHHHH----HHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEEechh-hCCHHHH----HHHHHhCCCCCEEEEEcc
Confidence 46799999998 8886432 333444445666666653
No 362
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=23.34 E-value=88 Score=16.19 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=22.7
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-.+|+++++|--..+.|. ..+.+.+.+ . .+..+|++|.
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~-~-~~~~ii~~t~ 81 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRK-K-YDMPIIMLTA 81 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHT-T-CCSCEEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHh-c-CCCCEEEEEC
Confidence 367999999988777654 334444332 2 2445555554
No 363
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=23.33 E-value=25 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=22.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~-tvi~vtH 57 (85)
.+-+++++||...-+|......+ ..++.....+. .++++.-
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~-~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQI-RKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHH-HHHHHHSCSSCEEEEEESC
T ss_pred ccceEEEEECHHHHhccchHHHH-HHHHHhCCcCCeEEEEEee
Confidence 45688999998765554333333 33344444444 4444433
No 364
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=23.22 E-value=87 Score=16.08 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=23.8
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.. .+.+.+.+. ....++++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~~ 83 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ--ANVALMFLTGR 83 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCEEEEEESC
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC--CCCcEEEEECC
Confidence 3579999999888777753 333443322 34556665543
No 365
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.04 E-value=96 Score=16.51 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=24.3
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.- .+++.+.+. ......+|++|.
T Consensus 46 ~~~~dlvl~D~~lp~~~g~---~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDGY---TLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSGGGTTCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHcCCCcCCccEEEEec
Confidence 4679999999888888753 344443332 123445555554
No 366
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=22.96 E-value=73 Score=19.40 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.5
Q ss_pred CCcEEEEEecCc
Q psy1506 48 KDKTRILVTHQL 59 (85)
Q Consensus 48 ~~~tvi~vtH~~ 59 (85)
.+.++++|||..
T Consensus 172 ~~~~vlvVsHg~ 183 (240)
T 1qhf_A 172 SGKTVMIAAHGN 183 (240)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCHH
Confidence 467899999963
No 367
>4goq_A Hypothetical protein; PF07372 family protein, DUF1491, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.87A {Caulobacter crescentus}
Probab=22.95 E-value=45 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCEEEE
Q psy1506 9 LCFEAVYKNADIYLL 23 (85)
Q Consensus 9 ~laral~~~p~illl 23 (85)
.++|..-.||++.++
T Consensus 79 ~l~R~~rfDPDlWVV 93 (110)
T 4goq_A 79 YAERAARIDPDIWVV 93 (110)
T ss_dssp HHHHHHHHCTTCEEE
T ss_pred HHHHHhccCCCeEEE
Confidence 577888899998874
No 368
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.91 E-value=83 Score=15.71 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=23.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~ 58 (85)
..|+++++|-...+.|.. .+.+.+..... .+..+|+++..
T Consensus 44 ~~~dlii~d~~~~~~~~~---~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSCL---LLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HCCSEEEEECSTTCCTHH---HHHHHHHHTCCCSSCCCEEEESS
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHhccccCCCCEEEEeCC
Confidence 579999999888776642 34444333221 34455555543
No 369
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=22.89 E-value=31 Score=20.53 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=21.2
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILV 55 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~v 55 (85)
.+-+++++||...-++......+ ..+......+..+++.
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l-~~i~~~~~~~~~~i~l 192 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQI-YQIFTLLPPTTQVVLL 192 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHH-HHHHHHSCTTCEEEEE
T ss_pred hhCcEEEEcChhHHhhhhhHHHH-HHHHHhCCccCeEEEE
Confidence 44679999999865554333333 3334444344444443
No 370
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.72 E-value=92 Score=16.21 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=23.9
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH 57 (85)
-..|+++++|=-..+.|.- .+.+.+.+.. ..+..+|++|-
T Consensus 44 ~~~~dlvllD~~~p~~~g~---~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 44 EFTPDLIVLXIMMPVMDGF---TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp TBCCSEEEECSCCSSSCHH---HHHHHHHTSTTTTTSCEEEEES
T ss_pred hcCCCEEEEeccCCCCcHH---HHHHHHHhcccccCCCEEEEec
Confidence 3679999999888887753 3444433221 12445555554
No 371
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=22.51 E-value=70 Score=22.76 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=26.6
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecCcc
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQLQ 60 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~~~ 60 (85)
+.+|+|+++|.+.+..+ .+... ++. ...|..++++..+.+
T Consensus 213 ~en~~Ill~d~~Is~~~-----~l~~~-le~i~~~g~~lvii~~~I~ 253 (543)
T 1we3_A 213 LEDAFILIVEKKVSNVR-----ELLPI-LEQVAQTGKPLLIIAEDVE 253 (543)
T ss_dssp EEEEEEEEESSCBCCHH-----HHHHH-HHHHHTTTCCEEEEESCBC
T ss_pred ecCceEEEECCCcCCHH-----HHHHH-HHHHHhcCCCEEEEcCCcc
Confidence 46899999999877543 23332 333 345788888887764
No 372
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=22.31 E-value=89 Score=15.85 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=22.6
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+.+.+.+ . ....++++|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~-~-~~~~ii~~s~ 80 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGL---EVAKTIRK-T-SSVPILMLSA 80 (120)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHH-H-CCCCEEEEES
T ss_pred hCCCCEEEEeccCCCCCHH---HHHHHHHh-C-CCCCEEEEec
Confidence 3579999999887777643 33344332 2 3445555544
No 373
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=22.31 E-value=1.7e+02 Score=18.99 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 11 FEAVYKNADIYLLD-DPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 11 aral~~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
|.-|+.+.++++.. -|..++...+... ++.++........+++--||.+.+
T Consensus 69 alklvndcdiliinsvpatsvqeatinn-ykklldnikpsirvvvyqhdhsvl 120 (401)
T 1xv5_A 69 ALKLVNDCDILIINSVPATSVQEATINN-YKKLLDNIKPSIRVVVYQHDHSVL 120 (401)
T ss_dssp HHHHHTSCSEEEEEECCBTTSCHHHHHH-HHHHHHHSCTTSEEEEEECCCSHH
T ss_pred HhhhhccCcEEEEccCccchhHHHHHhh-HHHHHhcCCCceEEEEEeccchhh
Confidence 45688999988876 5777776654443 344455555567788888886654
No 374
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.19 E-value=3e+02 Score=22.79 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=12.8
Q ss_pred cCCCEEEEecCCCCC
Q psy1506 16 KNADIYLLDDPLSAV 30 (85)
Q Consensus 16 ~~p~illlDEP~~~L 30 (85)
.+|+++++|+..+-.
T Consensus 809 ~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALT 823 (1706)
T ss_dssp TCCSEEEESCSTTCC
T ss_pred cCCCEEEEechhhhc
Confidence 589999999988765
No 375
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=21.95 E-value=1.1e+02 Score=16.56 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.2
Q ss_pred hcCCCEEEEecCCCCCCHH
Q psy1506 15 YKNADIYLLDDPLSAVDMH 33 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~ 33 (85)
-..|+++++|=-..+.|.-
T Consensus 56 ~~~~dlvl~D~~mp~~~g~ 74 (143)
T 3m6m_D 56 EEDYDAVIVDLHMPGMNGL 74 (143)
T ss_dssp HSCCSEEEEESCCSSSCHH
T ss_pred cCCCCEEEEeCCCCCCCHH
Confidence 3679999999888787753
No 376
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.64 E-value=98 Score=16.11 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=22.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH 57 (85)
..|+++++|--..+.|.. .+++.+.+... .+..+|++|.
T Consensus 54 ~~~dlvi~d~~~~~~~g~---~~~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGR---EVLAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp CCCSEEEECSSCSSSCHH---HHHHHHHHSTTGGGSCEEEEES
T ss_pred CCCcEEEEecCCCcccHH---HHHHHHHcCcccccccEEEEec
Confidence 479999999888777642 34444333221 2344555544
No 377
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=21.61 E-value=36 Score=14.61 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=12.4
Q ss_pred HhcCCCEEEEecCCCCC
Q psy1506 14 VYKNADIYLLDDPLSAV 30 (85)
Q Consensus 14 l~~~p~illlDEP~~~L 30 (85)
+-.+|.+++||-|.+++
T Consensus 6 m~inp~f~FL~~~~~~~ 22 (30)
T 3cm8_B 6 MDVNPTLLFLKVPAQNA 22 (30)
T ss_pred cccCccEEEEcChhhhh
Confidence 34689999998876543
No 378
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=21.61 E-value=37 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=17.7
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHH
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLF 39 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~ 39 (85)
.+|+|++=||..+|-|.-..++..
T Consensus 70 ~n~dIvF~deE~tgadR~Mt~Rc~ 93 (187)
T 3k7i_B 70 YNPDIIFKDEENTGADRLMTQRCK 93 (187)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHH
T ss_pred CCCceEecCccCCCcchhhCHHHH
Confidence 578999999999887765444443
No 379
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=21.54 E-value=1.1e+02 Score=16.76 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=30.7
Q ss_pred cCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506 16 KNADIYLLD-DPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY 61 (85)
Q Consensus 16 ~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~ 61 (85)
.+++.+++| .-..-+|......+..........|..++++.=+++.
T Consensus 41 ~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~v 87 (123)
T 3zxn_A 41 VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAV 87 (123)
T ss_dssp SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHH
T ss_pred cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 478899999 7888889987666655433333346677776655543
No 380
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.43 E-value=1.1e+02 Score=16.37 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=24.2
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
-..|+++++|--..+.|.. .+.+.+.+ ......+|++|..
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~l~~~l~~-~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSGE---DVLDWINQ-NDIPTSVIIATAH 85 (137)
T ss_dssp HHCCSEEEECSBCSSSBHH---HHHHHHHH-TTCCCEEEEEESS
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHh-cCCCCCEEEEEec
Confidence 3579999999887777642 34444322 2334556666543
No 381
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=21.38 E-value=83 Score=19.67 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=27.2
Q ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506 14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60 (85)
Q Consensus 14 l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~ 60 (85)
-+.+|-||+-|...+++.. ++..+-.....++..+++.-|.+
T Consensus 36 ~le~p~ILitdkKIs~i~~-----ilP~LE~v~~~~rpLlIIAEDve 77 (201)
T 3osx_A 36 ELENPYILLVDKKISNIRE-----LLPVLEGVAKASKPLVIIAEDVE 77 (201)
T ss_dssp EEESCEEEEEEEEECCHHH-----HHHHHHHHHTSSCCEEEEEEEEC
T ss_pred EecCCeEEEEcCccCCHHH-----HHHHHHHHHHhCCCeEEEecccc
Confidence 3578999999999888742 33322122345778888887764
No 382
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=21.30 E-value=94 Score=17.68 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=23.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 18 p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.++++...+...+++.....++..+.+.++.|..+++++
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 356777777777765556667666655555555544443
No 383
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=21.26 E-value=95 Score=22.03 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=26.6
Q ss_pred hcCCCEEEEecC-------------CCCCCHH-----HHHHHHHHHHhh-hcCCcEEEEEecCcch
Q psy1506 15 YKNADIYLLDDP-------------LSAVDMH-----VGKHLFEDCISG-FLKDKTRILVTHQLQY 61 (85)
Q Consensus 15 ~~~p~illlDEP-------------~~~LD~~-----~~~~i~~~~~~~-~~~~~tvi~vtH~~~~ 61 (85)
+.+|+|+++|-| .+..+.- ..++.+...++. ...|..++++.-+.+.
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 296 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDD 296 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 478999999999 3334331 011111222333 2357788888877653
No 384
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=21.25 E-value=1.3e+02 Score=17.80 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=26.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 18 p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.++++...+...++......+++.+.+.++.|..+++++
T Consensus 110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 467788888888876655566777666666665566555
No 385
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.18 E-value=1e+02 Score=16.17 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=21.1
Q ss_pred cCCCEEEEecCCC-----CCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLS-----AVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~-----~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..|+++++|--.. +.|. ..+++.+.+. ..+..+|++|.
T Consensus 46 ~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~-~~~~~ii~ls~ 88 (140)
T 2qr3_A 46 ENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQ-YRDLPVVLFTA 88 (140)
T ss_dssp SCEEEEEEETTTTC-----CCH---HHHHHHHHHH-CTTCCEEEEEE
T ss_pred CCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhh-CcCCCEEEEEC
Confidence 5689999998776 5554 2344443332 33445555543
No 386
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=21.14 E-value=96 Score=15.79 Aligned_cols=39 Identities=21% Similarity=0.055 Sum_probs=22.9
Q ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
-..|+++++|--..+.|.. .+.+.+.. ......+|++|.
T Consensus 42 ~~~~dlil~D~~l~~~~g~---~~~~~l~~-~~~~~~ii~~s~ 80 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGL---SLIRRWRS-NDVSLPILVLTA 80 (121)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHH-TTCCSCEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHh-cCCCCCEEEEec
Confidence 3579999999877777642 34444332 223445555554
No 387
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.13 E-value=1e+02 Score=16.23 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.2
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.. .+++.+.+. ......+|++|..
T Consensus 50 ~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp CCCEEEEEESCCSSSCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 568999999887776642 344443331 2234566666553
No 388
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=21.12 E-value=1.4e+02 Score=17.64 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=24.1
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ 58 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~ 58 (85)
..|+++++|--..+.|.- .+...+.. ...+..+|++|..
T Consensus 46 ~~~dlvllD~~lp~~~g~---~~~~~lr~-~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 46 ARPDVAVLDVRLPDGNGI---ELCRDLLS-RMPDLRCLILTSY 84 (225)
T ss_dssp HCCSEEEECSEETTEEHH---HHHHHHHH-HCTTCEEEEGGGS
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHH-hCCCCcEEEEECC
Confidence 579999999877776642 34444332 2345566766653
No 389
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.97 E-value=1.1e+02 Score=16.61 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=23.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEec
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTH 57 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH 57 (85)
.+|+++|+|--..+.|.. .+++.+.... ..+..+|++|.
T Consensus 50 ~~~dlii~D~~l~~~~g~---~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDGY---ALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp CCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhCCCcCCCCEEEEEC
Confidence 579999999888887753 3444433321 13445666554
No 390
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=20.93 E-value=99 Score=21.51 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 26 PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 26 P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
+.+.++++....+.+.+.+...++.-=|+|+|-.+.+
T Consensus 144 dSs~mtp~~w~~La~~I~~~~~~~~DG~VItHGTDTM 180 (435)
T 2d6f_A 144 LSENMKPEYWVETARAVYGEIKDGADGVVVAHGTDTM 180 (435)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHTTCSEEEEECCTTTH
T ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCeEEEEcCcchH
Confidence 5556666666777666544444356678899976554
No 391
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=20.74 E-value=31 Score=20.53 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=21.6
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEE
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILV 55 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~-tvi~v 55 (85)
.+-+++++||...-++......+ ..+.....++. .++++
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l-~~i~~~~~~~~~~l~~S 188 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDV-DQIAARMPKDLQMLVFS 188 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHH-HHHHHTSCTTCEEEEEE
T ss_pred CcceEEEEcCchHHhhhChHHHH-HHHHHhCCcccEEEEEe
Confidence 55689999999865554333333 33344443344 44444
No 392
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=20.71 E-value=1.9e+02 Score=20.49 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCchhHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506 1 MTGKSSCQLCFEAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQL 59 (85)
Q Consensus 1 ~~g~~~~~~laral~~~-p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~ 59 (85)
||...-=+++..+|... |+++++=|-- .|.+ .+.+.+.+.. .++..+|+++-..
T Consensus 272 MGR~aG~LAl~agLA~g~ad~ilIPE~p--~~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 272 MGRDSGFIAAQAAVASAQANICLVPENP--ISEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp CCSSCCHHHHHHHHHHTCCSEEECTTSC--CCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred CCCCHHHHHHHHHHhhCCCCEEEeCCCC--CCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 45555668899999988 9998885532 3332 3444433332 2567888888764
No 393
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=20.46 E-value=1.6e+02 Score=18.02 Aligned_cols=28 Identities=4% Similarity=-0.122 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHhhh-cCCcEEEEEe
Q psy1506 28 SAVDMHVGKHLFEDCISGF-LKDKTRILVT 56 (85)
Q Consensus 28 ~~LD~~~~~~i~~~~~~~~-~~~~tvi~vt 56 (85)
++||+...+.+.+. +... ..|..+.+++
T Consensus 31 ~gLdp~~a~al~~m-~~aA~~~Gi~l~v~s 59 (179)
T 1xp2_A 31 GGMYKITSDKTRNV-IKKMAKEGIYLCVAQ 59 (179)
T ss_dssp TTSCHHHHHHHHHH-HHHHHTTTCCEEEEE
T ss_pred cCCCHHHHHHHHHH-HHHHHHcCCeEEEEE
Confidence 68999877766544 4443 4566554443
No 394
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=20.44 E-value=36 Score=20.60 Aligned_cols=16 Identities=6% Similarity=0.223 Sum_probs=12.3
Q ss_pred cCCCEEEEecCCCCCC
Q psy1506 16 KNADIYLLDDPLSAVD 31 (85)
Q Consensus 16 ~~p~illlDEP~~~LD 31 (85)
.+-+++++||...-+|
T Consensus 174 ~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFE 189 (245)
T ss_dssp TTCCEEEESSHHHHHH
T ss_pred ccCcEEEEeChHHhcc
Confidence 4567899999987665
No 395
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=20.41 E-value=59 Score=19.15 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=28.7
Q ss_pred cCCCCCCHHH----HHHHHHHHHhhhc--CCcEEEEEecCcchhhhCCeEEEE
Q psy1506 25 DPLSAVDMHV----GKHLFEDCISGFL--KDKTRILVTHQLQYLNHVDQIVFL 71 (85)
Q Consensus 25 EP~~~LD~~~----~~~i~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l 71 (85)
.+..+|+.+. .++.+..+..... -+..-+.+.|+...+.-.+.++++
T Consensus 45 ~~V~~L~ye~Y~~ma~~~l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~V 97 (150)
T 1fm0_E 45 DSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFV 97 (150)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHHHHHHHSCEEEEEEEEECEEECTTCEEEEE
T ss_pred CcEeEEEEEecchHHHHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEE
Confidence 4677776542 4444555554433 256778888998888777776654
No 396
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=20.40 E-value=1.2e+02 Score=20.20 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=26.0
Q ss_pred CCCEEEEecCCCC---CCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506 17 NADIYLLDDPLSA---VDMHVGKHLFEDCISGFLKDKTRILVTH 57 (85)
Q Consensus 17 ~p~illlDEP~~~---LD~~~~~~i~~~~~~~~~~~~tvi~vtH 57 (85)
..++++.+-|+.. ........++..+.+.++.|..++++.+
T Consensus 298 ~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 298 RFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 4578899988876 3334455666665555666656666654
No 397
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=20.40 E-value=1.9e+02 Score=18.94 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=23.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh--cC-CcEEEEEecCcc
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGF--LK-DKTRILVTHQLQ 60 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~--~~-~~tvi~vtH~~~ 60 (85)
..+-+++|||.-.=.+. . ++..+++.. .. ...+|.++++++
T Consensus 131 ~~~~ii~lDE~d~l~~q---~-~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE---K-ILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCCT---H-HHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhcc---h-HHHHHHhcccccCCcEEEEEEecCcc
Confidence 34669999998776632 2 222333321 22 346777887664
No 398
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=20.38 E-value=2.5e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe-----cCcchhhhCCeEEEE
Q psy1506 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVT-----HQLQYLNHVDQIVFL 71 (85)
Q Consensus 16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt-----H~~~~~~~~d~v~~l 71 (85)
.+|++.|+|+|-++.|.+....+ +. -|....++. |+...+..+|.+++-
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~-----~~--aG~~~~~v~~~dl~~~~~~l~~~d~lvlP 1099 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAF-----HR--AGFDAIDVHMSDLLGGRIGLGNFHALVAC 1099 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHH-----HH--TTCEEEEEEHHHHHTTSCCGGGCSEEEEC
T ss_pred CCCEEEEEecCCcCCHHHHHHHH-----HH--hCCceEEEeecccccCcccHhhCCEEEEC
Confidence 58999999999999987643322 11 244444444 344456666766554
No 399
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=20.34 E-value=99 Score=21.53 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506 26 PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL 62 (85)
Q Consensus 26 P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~ 62 (85)
+.+.++++....+.+.+.+.+.++.-=|+|+|-.+.+
T Consensus 145 dSs~mtp~~w~~La~~I~~~~~~~~DG~VItHGTDTM 181 (438)
T 1zq1_A 145 FSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTM 181 (438)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHTTCSEEEEECCSSSH
T ss_pred CcccCCHHHHHHHHHHHHHHhccCCCeEEEecCchhH
Confidence 5666777777777666544444356678899966544
No 400
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=20.32 E-value=44 Score=20.77 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHHhc
Q psy1506 2 TGKSSCQLCFEAVYK 16 (85)
Q Consensus 2 ~g~~~~~~laral~~ 16 (85)
+|..++-++.+++-.
T Consensus 192 ~G~~Ka~ai~~~l~~ 206 (238)
T 1y89_A 192 LGAGKAEIVEQIHTT 206 (238)
T ss_dssp CSGGGHHHHHHHHHS
T ss_pred eCHHHHHHHHHHHhC
Confidence 688888888888764
No 401
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=20.10 E-value=1.5e+02 Score=19.08 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506 28 SAVDMHVGKHLFEDCISGFLKDKTRILVT 56 (85)
Q Consensus 28 ~~LD~~~~~~i~~~~~~~~~~~~tvi~vt 56 (85)
.++|+...+.+.+.+.+...+|.-+++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67898877777777655555676666655
Done!