RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1506
(85 letters)
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 119 bits (300), Expect = 1e-35
Identities = 46/62 (74%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
AVY +ADIYLLDDPLSAVD HVG+H+FE+CI G L + KTRILVTHQLQ L H DQIV L
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVL 200
Query: 72 NN 73
+N
Sbjct: 201 DN 202
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 94.0 bits (234), Expect = 3e-24
Identities = 36/73 (49%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVY N+D+Y+ DDPLSA+D HVG+ +F+ CI L+ KTR+LVT+QL +L+ VD+I+ ++
Sbjct: 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVH 813
Query: 73 N-VSKTSGWVEEI 84
+ K G EE+
Sbjct: 814 EGMIKEEGTYEEL 826
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 89.6 bits (222), Expect = 1e-22
Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIVF 70
AVY NADIYL DDPLSAVD HVGKH+FE I G LK+KTRILVTH + YL VD I+
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833
Query: 71 L 71
+
Sbjct: 834 M 834
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 88.3 bits (219), Expect = 3e-22
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
AVY N D+YLLDDPLSA+D HVG+ + E+C G L KTR+L THQ+ + D +V L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 77.7 bits (191), Expect = 1e-18
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVY N+DIY+ DDPLSA+D HV +F+ C+ LK KTR+LVT+QL +L +D+I+ ++
Sbjct: 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVS 813
Query: 73 N-VSKTSGWVEEI 84
+ K G E+
Sbjct: 814 EGMIKEEGTFAEL 826
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 67.7 bits (165), Expect = 2e-15
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTH 57
++G ++C A+Y+N +I LDDP SA+D+H+ HL ++ I FL+D +T +LVTH
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 58 QLQYLNHVDQIVFLNN 73
+LQYL H D I+ + +
Sbjct: 201 KLQYLPHADWIIAMKD 216
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 69.2 bits (169), Expect = 2e-15
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P + +D+ K +FE C+ + +KTRILVT +L++L D+I+ L+
Sbjct: 562 AVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621
Query: 73 N 73
Sbjct: 622 E 622
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 68.3 bits (167), Expect = 2e-15
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73 NVS 75
S
Sbjct: 233 EGS 235
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 63.2 bits (155), Expect = 3e-14
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++ I +LD+ SA+D + L + + K KT I++ H+L + D+I+ L+
Sbjct: 110 ALLRDPPILILDEATSALDPE-TEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLD 168
Query: 73 N 73
+
Sbjct: 169 D 169
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 51.7 bits (124), Expect = 2e-09
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +N I +LD+ SA+D + + + LK +T +++ H+L + + D+I+ L+
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLD 537
Query: 73 N 73
N
Sbjct: 538 N 538
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 49.6 bits (119), Expect = 1e-08
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ A + LLD+P + +D + + + + K KT +++TH+L+ D+IV L+
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLD 528
Query: 73 N 73
N
Sbjct: 529 N 529
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 49.1 bits (118), Expect = 2e-08
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++ I LLD+P SA+D + + + +L KT +LVTH+ L+ VD+I+ ++
Sbjct: 615 ALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMD 673
Query: 73 N 73
N
Sbjct: 674 N 674
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 47.2 bits (113), Expect = 6e-08
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ + I LLD+P SA+DM+ + L E + L DKT I++TH+ L+ VD+I+ ++
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMD 212
Query: 73 N 73
+
Sbjct: 213 S 213
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 46.9 bits (112), Expect = 6e-08
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
++A I LLD+P +D + L I LKDKT I +TH L + H+D+I+FL N
Sbjct: 115 QDAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 45.3 bits (108), Expect = 3e-07
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYL-NHVDQIVFLNN 73
N D+ LLD+P + VD+ K +++ + L+ KT ++VTH L + + D+++ LN
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214
Query: 74 VSKTSGWVEEIL 85
SG EE+L
Sbjct: 215 HLIASGPPEEVL 226
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 43.4 bits (103), Expect = 1e-06
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYL-NHVDQIVF 70
A+ N D+ LLD+P S +D + + + ++ +T I+VTH + D+++
Sbjct: 94 ALLLNPDLLLLDEPTSGLDPA-SRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152
Query: 71 LNN 73
L +
Sbjct: 153 LKD 155
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 43.0 bits (102), Expect = 2e-06
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ KN I LLD+ SA+D H + + + K +T I++ H+L + + D+I+ L
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209
Query: 73 N 73
+
Sbjct: 210 D 210
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 43.0 bits (102), Expect = 2e-06
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ I LLD+ SA+D + ++ + L+ +T I++ H+L + D+I+ L+
Sbjct: 623 ALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLD 681
Query: 73 N 73
Sbjct: 682 Q 682
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 42.5 bits (101), Expect = 4e-06
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ + + LLD+P +++D H + + + ++ + +T ++VTHQL+ L DQI +
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557
Query: 73 N 73
+
Sbjct: 558 D 558
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 42.3 bits (100), Expect = 4e-06
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
+A ++LLD+P +D + + + + KT ++VTH+L+ L +D+I+ L+N
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 41.4 bits (98), Expect = 7e-06
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ K+ I +LD+ SA+D + L + + +K++T ++ H+L + + D+IV L
Sbjct: 152 ALLKDPPILILDEATSALD-TESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLE 210
Query: 73 N 73
+
Sbjct: 211 D 211
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 41.3 bits (98), Expect = 8e-06
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-----KTRILVTHQLQYL-NHVDQIVF 70
+ DI LLD+P + +D + L E LK KT I+VTH L L D+++
Sbjct: 152 DPDILLLDEPTAGLDPAGRRELLE-----LLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206
Query: 71 LNN 73
L +
Sbjct: 207 LED 209
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 41.1 bits (97), Expect = 1e-05
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++ I +LD+ S +D K L ++ + +K +T I++ H+L + + D+I+ L+
Sbjct: 153 AMLRDPKILILDEATSNIDTETEK-LIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLD 211
Query: 73 N 73
+
Sbjct: 212 D 212
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 40.2 bits (95), Expect = 3e-05
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 13 AVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
A+ +A + LLD+P +D + + L E ++KT +++TH+L L D+I
Sbjct: 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAE-----HAQNKTVLMITHRLTGLEQFDRI 543
Query: 69 VFLNN 73
++N
Sbjct: 544 CVMDN 548
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 39.8 bits (94), Expect = 3e-05
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL-QYLNHVDQIVFLNN 73
+ D+ LLD+P + VD + ++E + T ++VTH L L + D+++ LN
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 39.3 bits (92), Expect = 5e-05
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ K+A I +LD+ SA+D + + + + ++ +T +++ H+L + D+IV +
Sbjct: 483 ALLKDAPILILDEATSALDNESERLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 38.7 bits (91), Expect = 6e-05
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFL 71
A+Y N I +LD+P S +D G+ I+ TRI++ H+ + L D+I+ L
Sbjct: 110 ALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVL 168
Query: 72 NN 73
+
Sbjct: 169 ED 170
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 38.3 bits (89), Expect = 1e-04
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ KNA I +LD+ SA+D+ + ++ I K++T ++ H+L + + D ++FL+
Sbjct: 485 AILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLD 543
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 38.1 bits (89), Expect = 1e-04
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ K+A I LLD+ SA+D + L + + +K +T +++ H+L + D+IV ++
Sbjct: 490 AILKDAPILLLDEATSALDAE-SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548
Query: 73 N 73
Sbjct: 549 Q 549
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ +N + +LD+ SA+D + + + + + +T +++ H+L + DQI+ L
Sbjct: 164 ALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVL 221
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 37.7 bits (87), Expect = 2e-04
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQ 58
++G +LC A+ D+ L+D+P SA+D + + E C+ LK++ T I+VTH
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE--LKEQYTIIMVTHN 219
Query: 59 LQYLNHV-DQIVFLNNVSKTSG 79
+Q + V D F N G
Sbjct: 220 MQQASRVADWTAFFNTEIDEYG 241
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 37.7 bits (88), Expect = 2e-04
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A ++A + LLD+P + +D + + + + +T +LVTH+L D+IV L
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTHRLALAALADRIVVL 529
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 37.4 bits (87), Expect = 2e-04
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ + + +LD+ SA+D + L E S +T +L+ H+L + DQI+ L
Sbjct: 631 ALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLK 687
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 36.9 bits (86), Expect = 3e-04
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 19 DIYLLDDPLSAVDMHVGKHL---FEDCISGFLKDKTRILVTH-QLQYLNHVDQIVFLNN 73
+ LLD+P A+D V K L T + VTH Q + L D++V LN
Sbjct: 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRL--GVTTVFVTHDQEEALELADRVVVLNQ 213
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 36.9 bits (86), Expect = 3e-04
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 11/70 (15%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK---TRILVTH-QLQYLNHVDQIVFLNNV 74
+ LLD+PLSA+D V +HL + I L+ + T I+VTH Q + L+ D+IV +N+
Sbjct: 154 GLLLLDEPLSALDARVREHLRTE-IRQ-LQRRLGVTTIMVTHDQEEALSMADRIVVMNH- 210
Query: 75 SKTSGWVEEI 84
G +E++
Sbjct: 211 ----GVIEQV 216
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 35.5 bits (82), Expect = 0.001
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ + ++ L+D+P SA+D V ED I ++ T ++VTH +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALD-PVATSKIEDLIEELAEEYTVVIVTHNM 239
Query: 60 Q 60
Q
Sbjct: 240 Q 240
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.3 bits (81), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC + + ++ L+D+P SA+D + ED I +D T ++VTH +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALD-PISTTKIEDLIHKLKEDYTIVIVTHNM 205
Query: 60 QYLNHVDQIV--FLNNVSKTSGWVEEIL 85
Q V + FLN SG ++I
Sbjct: 206 QQATRVSKYTSFFLNGEIIESGLTDQIF 233
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 35.5 bits (82), Expect = 0.001
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ D+ L+D+P SA+D + ED I+ +D T ++VTH +
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALD-PISTLAIEDLINELKQDYTIVIVTHNM 207
Query: 60 QYLNHV-DQIVFLN 72
Q V DQ F N
Sbjct: 208 QQAARVSDQTAFFN 221
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 35.1 bits (82), Expect = 0.001
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHV-DQIVFLNN 73
+ ++ +LD+P S +D + F + + K+ KT +L +H L+ + D++ LNN
Sbjct: 113 DPELLILDEPTSGLDP-ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 34.8 bits (81), Expect = 0.001
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNN 73
++ LLD+P SA+D + E+ I+ K+ T ++VTH +Q V D+ FL N
Sbjct: 161 EVLLLDEPTSALDP-ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
NA+I +LDD LSAVD + + + + + +T I+ H+L L +I+ +
Sbjct: 469 NAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQ 523
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 34.7 bits (80), Expect = 0.002
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDK-TRIL 54
++G +LC A+ DI L+D+P SA+D M + + +FE LK T I+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE------LKKNYTIII 217
Query: 55 VTHQLQ 60
VTH +Q
Sbjct: 218 VTHNMQ 223
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 34.5 bits (80), Expect = 0.002
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIV 69
A+ + ++L+D+PLS +D + + + + + T I VTH Q++ + D+I
Sbjct: 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202
Query: 70 FLNN 73
+N+
Sbjct: 203 VMND 206
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 34.4 bits (80), Expect = 0.002
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +N I LLD+ SA+D K L ++ + +K +T I++ H+L + + D I L
Sbjct: 153 ALLRNPKILLLDEATSALDAESEK-LVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQ 211
Query: 73 N 73
N
Sbjct: 212 N 212
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 34.5 bits (79), Expect = 0.003
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQ 58
++G +LC A+ N D+ L+D+P SA+D V E+ I LK+K T ++VTH
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALD-PVSTRKIEELILK-LKEKYTIVIVTHN 213
Query: 59 LQYLNHV-DQIVFL 71
+Q V DQ F
Sbjct: 214 MQQAARVSDQTAFF 227
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 34.3 bits (79), Expect = 0.003
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
A I LLD+P +D L ED ++ L +T +L+TH L
Sbjct: 490 APILLLDEPTEHLDAETADELLEDLLAA-LSGRTVVLITHHL 530
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 33.9 bits (79), Expect = 0.003
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 18/71 (25%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV- 65
A+ + I LLD+P S +D+ L E L+ KT ++V H LN
Sbjct: 111 ALAQEPPILLLDEPTSHLDIAHQIELLE-----LLRRLARERGKTVVMVLH---DLNLAA 162
Query: 66 ---DQIVFLNN 73
D+++ L +
Sbjct: 163 RYADRVILLKD 173
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 34.0 bits (78), Expect = 0.004
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC + + ++ L+D+P SA+D + ED I ++ T ++VTH +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALD-PIATSKIEDLIEELAEEYTVVVVTHNM 259
Query: 60 QYLNHV-DQI-VFL 71
Q + DQ VFL
Sbjct: 260 QQAARISDQTAVFL 273
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 33.6 bits (77), Expect = 0.004
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
N ++ L+D+P SA+D + ED I K+ T I+VTH +Q
Sbjct: 167 NPEVILMDEPCSALD-PIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 33.8 bits (77), Expect = 0.004
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ ++ LLD+P SA+D + E+ + KD T LVTH +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALD-PIATRRVEELMVELKKDYTIALVTHNM 208
Query: 60 QYLNHVDQIVFLNNVSKTSG 79
Q V +V + G
Sbjct: 209 QQAIRVADTTAFFSVDISQG 228
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 33.6 bits (77), Expect = 0.004
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 17 NADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
+ I LLD+P SA+D + GK E+ + G D T +LVT +Q
Sbjct: 166 SPKIILLDEPTSALDPISAGK--IEETLLGLKDDYTMLLVTRSMQ 208
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 33.4 bits (77), Expect = 0.006
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTH-QLQYLNHV 65
A+ + LLD+PLSA+D + + + ++ LK+ T + VTH Q + L
Sbjct: 150 ALVPEPKVLLLDEPLSALDAKLREQMRKE-----LKELQRELGITFVYVTHDQEEALAMS 204
Query: 66 DQIVFLNN-VSKTSGWVEEI 84
D+I +N+ + G EEI
Sbjct: 205 DRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 33.3 bits (76), Expect = 0.006
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC + D+ L+D+P SA+D + H E+ + K+ T ++VTH +
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALD-PIATHKIEELMEELKKNYTIVIVTHSM 204
Query: 60 Q 60
Q
Sbjct: 205 Q 205
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 33.4 bits (77), Expect = 0.006
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFE--DCISGFLKDKTRILVTHQLQYLNHVDQIVF 70
A+ K+ I +LD+ SA+D+ + D + K +T ++ H+L + + D+I+
Sbjct: 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM---KGRTTFIIAHRLSTVRNADRILV 541
Query: 71 LNN 73
+N
Sbjct: 542 FDN 544
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 33.0 bits (76), Expect = 0.007
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR--ILVTHQLQYLNHV-DQIVFLNN 73
+ ++ +LD+P S +D + + + K+ +L TH L+ + D+++ LN+
Sbjct: 154 DPELLILDEPTSGLDPE-SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 33.4 bits (76), Expect = 0.007
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNN 73
+ LLD+P SA+D + E+ I+ ++ + I+VTH +Q V D+ F N
Sbjct: 185 VLLLDEPASALD-PISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN 238
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 32.9 bits (76), Expect = 0.009
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV-DQIV 69
+ D+ LLD+P SA+D + LK T +LVTH L + D++V
Sbjct: 118 DPDVLLLDEPTSALDPITR-----REVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172
Query: 70 FLNN 73
L +
Sbjct: 173 VLRD 176
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 33.1 bits (75), Expect = 0.009
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLNHVDQIVF 70
A+ + I LLD+ S++D + K L E I DKT I + H++ + D+IV
Sbjct: 1372 ALLREPKILLLDEATSSLDSNSEK-LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430
Query: 71 LNNVSKTSGWVE 82
NN +T +V+
Sbjct: 1431 FNNPDRTGSFVQ 1442
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.1 bits (75), Expect = 0.009
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ + + L+D+P SA+D + E+ I KD T ++VTH +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALD-PISTAKVEELIHELKKDYTIVIVTHNM 205
Query: 60 Q 60
Q
Sbjct: 206 Q 206
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 32.6 bits (75), Expect = 0.010
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
A + DI LLD+ L+ D + E K+KT +LV+H L + D+ ++L
Sbjct: 161 ATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL 220
Query: 72 NN 73
+
Sbjct: 221 EH 222
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 32.7 bits (74), Expect = 0.010
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRIL-VTHQ 58
++G +LC A+ + +I L D+P SA+D + E+ IS LK+K IL VTH
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALD-PIATASIEELISD-LKNKVTILIVTHN 219
Query: 59 LQ 60
+Q
Sbjct: 220 MQ 221
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 32.7 bits (75), Expect = 0.011
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 17 NADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
++ LLD+P SA+D + GK E+ I K T ++VTH +Q
Sbjct: 162 EPEVLLLDEPTSALDPIATGK--IEELIQELKKKYTIVIVTHNMQ 204
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 32.5 bits (75), Expect = 0.012
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIV 69
A+ + + LLD+PLSA+D + + L E+ + + T I VTH Q + L D+I
Sbjct: 144 ALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIA 202
Query: 70 FLNN 73
+N
Sbjct: 203 VMNE 206
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 32.3 bits (74), Expect = 0.014
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
+ KN I +LD+ SA+D H + + + +T +++ H+L + D+I+ L+
Sbjct: 413 TILKNPPILILDEATSALDTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLD 471
Query: 73 N 73
N
Sbjct: 472 N 472
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 32.1 bits (73), Expect = 0.015
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNNVSKT 77
++ L+D+P SA+D + E+ + K+ T ++VTH +Q V D F N
Sbjct: 174 EVILMDEPCSALD-PISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVE 232
Query: 78 SG 79
G
Sbjct: 233 GG 234
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 32.2 bits (74), Expect = 0.015
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 14/65 (21%)
Query: 17 NADIYLLDDPLSAVD-------MHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQI 68
+I LLD+P + +D + + K L E+ KT I+VTH L+ + + D++
Sbjct: 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEE------GGKTIIIVTHDLELVLEYADRV 209
Query: 69 VFLNN 73
V L++
Sbjct: 210 VVLDD 214
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 32.4 bits (74), Expect = 0.015
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 20/73 (27%)
Query: 19 DIYLLDDPLSAVD-------MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVF 70
++ L D+P SA+D + V + L E+ +T ++VTH++ + V ++F
Sbjct: 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE-------GRTMVVVTHEMGFARDVSSHVIF 224
Query: 71 LNNVSKTSGWVEE 83
L+ G +EE
Sbjct: 225 LHQ-----GKIEE 232
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 32.2 bits (74), Expect = 0.015
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQY-LNHV 65
A+ + I LLD+P S +D+ H E + L+D T ++V H L +
Sbjct: 152 ALAQETPILLLDEPTSHLDI---AHQIE--VLELLRDLNREKGLTVVMVLHDLNLAARYA 206
Query: 66 DQIVFLNN 73
D ++ L +
Sbjct: 207 DHLILLKD 214
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 32.1 bits (74), Expect = 0.018
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHVD 66
A+ N I L D+P +D K + E L++ KT I+VTH + + D
Sbjct: 156 ALINNPKIILADEPTGNLDSKTAKEVLE-----LLRELNKERGKTIIMVTHDPELAKYAD 210
Query: 67 QIVFLNN 73
+++ L +
Sbjct: 211 RVIELKD 217
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 31.9 bits (72), Expect = 0.022
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC + I L D+P SA+D + ED I KD T ++VTH +
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALD-PISTARIEDLIMNLKKDYTIVIVTHNM 213
Query: 60 Q 60
Q
Sbjct: 214 Q 214
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 31.7 bits (72), Expect = 0.026
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTH-QLQYLNHV 65
A+ I LLD+PLSA+D + + + LK T + VTH Q + +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLE-----LKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 66 DQIVFLNN 73
D+I +
Sbjct: 169 DRIAIMRK 176
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 31.6 bits (72), Expect = 0.028
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ ++ L+D+P SA+D + E+ I KD T ++VTH +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALD-PISTLKIEELIQELKKDYTIVIVTHNM 205
Query: 60 Q 60
Q
Sbjct: 206 Q 206
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 31.5 bits (71), Expect = 0.028
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 20/73 (27%)
Query: 19 DIYLLDDPLSAVD-------MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVF 70
++ L D+P SA+D + + + L E+ KT ++VTH++ + HV ++F
Sbjct: 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEE-------GKTMVVVTHEMGFARHVSSHVIF 224
Query: 71 LNNVSKTSGWVEE 83
L+ G +EE
Sbjct: 225 LHQ-----GKIEE 232
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 31.5 bits (72), Expect = 0.028
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 13/75 (17%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLK---DKTRI---LVTHQLQYLNHV-DQIVFL 71
++ L+D+PL+++D+ + + +L+ D+ I V+H L + + D++V L
Sbjct: 148 ELLLMDEPLASLDLPRKREILP-----YLERLRDEINIPILYVSHSLDEVLRLADRVVVL 202
Query: 72 NN-VSKTSGWVEEIL 85
N K SG +EE+
Sbjct: 203 ENGKVKASGPLEEVW 217
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 31.4 bits (71), Expect = 0.029
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 13 AVYKNADIYLLDDPLSAVD----MHVG---KHLFEDCISGFLKDKTRILVTHQLQYLNHV 65
A+ +NA YL D+P + +D ++ + L E+ KT ++V H L L+++
Sbjct: 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE------GKKTALVVEHDLAVLDYL 138
Query: 66 DQIV 69
+
Sbjct: 139 SDRI 142
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 31.5 bits (71), Expect = 0.030
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC + D+ L+D+P SA+D + ED + K+ T ++VTH +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALD-PISTLKIEDLMVELKKEYTIVIVTHNM 206
Query: 60 QYLNHV 65
Q + V
Sbjct: 207 QQASRV 212
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 31.6 bits (72), Expect = 0.031
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++ + +LD+ S +D K + + + L+DKT I V H+L D+I+ L+
Sbjct: 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKIIVLD 682
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 31.0 bits (70), Expect = 0.038
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR--ILVTH-QLQYLNHVDQIVFL 71
I LLD+ SA+D K E+ I +++++ + +TH + Q + H D+++ L
Sbjct: 153 KILLLDEITSALDES-NKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL 207
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 30.8 bits (70), Expect = 0.039
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69
A K +Y+LD+ +D G+ L E + +K I++TH + D+++
Sbjct: 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI 151
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 31.2 bits (71), Expect = 0.039
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 20 IYLLDDPLSAVD---MHVGKHLFED-CISGFLKDKTRILVTHQLQYLNHV-DQIVFLNN 73
I LLD+P SA+D L C + T ++VTH + + D++VFL+N
Sbjct: 150 ILLLDEPFSALDPALRAEMLALVSQLCDE---RKMTLLMVTHHPEDAARIADRVVFLDN 205
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 30.9 bits (71), Expect = 0.043
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ + + I +LD+ ++VD + + I KD T + + H+L + D+I+ L+
Sbjct: 153 ALLRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211
Query: 73 N 73
Sbjct: 212 K 212
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 31.0 bits (71), Expect = 0.044
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQL 59
A+Y+ A + +LD+P + + LFE I L KT I +TH+L
Sbjct: 154 ALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGKTIIFITHKL 200
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 30.9 bits (71), Expect = 0.045
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 19 DIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDK-TRILVTHQLQYLNHV-DQIVFLNN 73
+ L D+P SA+D VG+ D + ++ T I+VTH++ + V D+++F++
Sbjct: 156 KVMLFDEPTSALDPELVGE--VLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 30.7 bits (70), Expect = 0.053
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 17 NADIYLLDDPLSAVDMH----VGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFL 71
D+ + D+P S +D VG+ L + + + K I++TH ++L D+++ L
Sbjct: 144 GKDLLIFDEPTSGLDYKNMERVGE-LIRELAA---QGKAVIVITHDYEFLAKVCDRVLLL 199
Query: 72 NN 73
N
Sbjct: 200 AN 201
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 30.6 bits (70), Expect = 0.059
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 16/64 (25%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQ---YLNHVDQIV 69
+ LLD+P A+D + L ++ L KT +LVTH + YL D++V
Sbjct: 150 KLLLLDEPFGALDALTREELQDE-----LLRLWEETRKTVLLVTHDVDEAVYLA--DRVV 202
Query: 70 FLNN 73
L+N
Sbjct: 203 VLSN 206
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 30.7 bits (70), Expect = 0.060
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 22 LLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTH-QLQYLNHVDQIVFLN 72
LLD+PL A+D+ + K + + LK T + VTH Q + L D+I +N
Sbjct: 153 LLDEPLGALDLKLRKDMQLE-----LKRLQKELGITFVFVTHDQEEALTMSDRIAVMN 205
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 30.6 bits (70), Expect = 0.061
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 19 DIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNN 73
++ L+D+P SA+D + + E+ I+ K T ++VTH +Q V D F
Sbjct: 169 EVLLMDEPTSALDPISTLKI-----EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYL 223
Query: 74 VSKTSGWVEEI 84
G + E
Sbjct: 224 -----GELVEF 229
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 30.4 bits (68), Expect = 0.064
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ +I L+D+P SA+D + ED ++ K T I+VTH +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-EDLMTDLKKVTTIIIVTHNM 207
Query: 60 Q 60
Sbjct: 208 H 208
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 30.2 bits (68), Expect = 0.069
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQLQYLNHV-DQIVFLNN 73
I LLD+P SA+D + + + + + +T ++VTH L + QI ++
Sbjct: 149 ILLLDEPFSALDPLLREEMLA-LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 30.1 bits (68), Expect = 0.082
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ ++ L+D+P SA+D + E+ I T I+VTH +
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALD-PIATQKIEELIHELKARYTIIIVTHNM 208
Query: 60 QYLNHV-DQIVF 70
Q V D F
Sbjct: 209 QQAARVSDVTAF 220
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 30.1 bits (67), Expect = 0.083
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G LC + N ++ LLD+P SA+D + + E+ I T I+VTH L
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNL 222
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 30.0 bits (68), Expect = 0.087
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+Y + + +LD+P S +D + L + + T +++TH+ L VD+I+ L
Sbjct: 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQ 527
Query: 73 N 73
+
Sbjct: 528 D 528
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 30.0 bits (68), Expect = 0.10
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 22 LLDDPLSAVDMHVGKHLFEDCISGFLK---DK---TRILVTH-QLQYLNHVDQIVFLNNV 74
LLD+P A+D V K L +L+ D+ T + VTH Q + L D++V +N
Sbjct: 159 LLDEPFGALDAKVRKEL-----RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK- 212
Query: 75 SKTSGWVEEI 84
G +E++
Sbjct: 213 ----GRIEQV 218
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 29.8 bits (67), Expect = 0.11
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ ++ L+D+P SA+D + E+ + + T I+VTH +
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALD-PISTLRIEELMHELKEQYTIIIVTHNM 210
Query: 60 QYLNHV-DQIVFLN 72
Q V D F N
Sbjct: 211 QQAARVSDMTAFFN 224
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 29.6 bits (67), Expect = 0.12
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 19 DIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
++ LLD+P SA+D + G+ E+ I+ +D T ++VTH +Q
Sbjct: 176 EVLLLDEPCSALDPISTGR--IEELITELKQDYTVVIVTHNMQ 216
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 29.4 bits (67), Expect = 0.13
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLK-----DKTRILVTHQL 59
D+ LLD+P SA+D + L E+ L KT +LVTH +
Sbjct: 151 DVLLLDEPFSALDALTREQLQEE----LLDIWRETGKTVLLVTHDI 192
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 29.3 bits (67), Expect = 0.13
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-----KTRILVTHQLQYLNHV-- 65
A+ +NA + +LD+P +A+ + LF+ ++ I ++H L+ V
Sbjct: 96 ALARNARLLILDEPTAALTPAEVERLFK-----VIRRLRAQGVAVIFISH---RLDEVFE 147
Query: 66 --DQIVFLNN 73
D++ L +
Sbjct: 148 IADRVTVLRD 157
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 29.8 bits (67), Expect = 0.13
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-----DKTRILVTHQL-QYLNHVD 66
A+ DI L+D+ SA+D + + ++ K KT + +TH L + + D
Sbjct: 143 ALAAEPDILLMDEAFSALDPLIRDSMQDE----LKKLQATLQKTIVFITHDLDEAIRIGD 198
Query: 67 QIVFLNN 73
+IV +
Sbjct: 199 RIVIMKA 205
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 29.3 bits (67), Expect = 0.14
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN 63
K L + + +N ++ LLD+P + +D+ E+ + + T ILV+H +L+
Sbjct: 76 KMRLALA-KLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEY--PGTVILVSHDRYFLD 131
Query: 64 HV-DQIVFLNN 73
V +I+ L +
Sbjct: 132 QVATKIIELED 142
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 29.4 bits (66), Expect = 0.17
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 17/72 (23%)
Query: 20 IYLLDDPLSAVDMHVGKHL------FEDCISGFLKDKTRILVTH-QLQYLNHVDQIVFLN 72
+ LLD+P A+D V K L D + T + VTH Q + + D+IV ++
Sbjct: 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVH-----VTTVFVTHDQEEAMEVADRIVVMS 205
Query: 73 NVSKTSGWVEEI 84
N G +E+I
Sbjct: 206 N-----GKIEQI 212
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 29.2 bits (66), Expect = 0.18
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 19 DIYLLDDPLSAVDMHVGK---HLFEDCISGFLKDK---TRILVTHQLQYLNHV-DQIVFL 71
+ +LD+P SA+D+ V +L + LK + T + ++H L + H+ D+I +
Sbjct: 161 KLLILDEPTSALDVSVQAQILNLLLE-----LKKERGLTYLFISHDLALVEHMCDRIAVM 215
Query: 72 NNVSKTSGWVEEIL 85
+N G + EI
Sbjct: 216 DN-----GQIVEIG 224
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 29.0 bits (66), Expect = 0.18
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHVD 66
A+ + I L D+P +D GK + E L++ T ++VTH + + D
Sbjct: 154 ALANDPKIILADEPTGNLDSETGKEVME-----LLRELNKEAGTTIVVVTHDPELAEYAD 208
Query: 67 QIVFL 71
+I+ L
Sbjct: 209 RIIEL 213
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 29.1 bits (65), Expect = 0.18
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV 65
+I LLD+P SA+D + ED I T ++VTH +Q + V
Sbjct: 202 EILLLDEPTSALDPKATAKI-EDLIQELRGSYTIMIVTHNMQQASRV 247
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 28.9 bits (65), Expect = 0.19
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 19 DIYLLDDPLSAVDMH-VGKHLFEDCISGFLKDK-TRILVTHQLQYLNHV-DQIVFLN 72
++ L D+P SA+D VG+ L + I ++K T ++VTH++ + V D+ +F++
Sbjct: 164 EVILFDEPTSALDPELVGEVL--NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 29.0 bits (66), Expect = 0.20
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHV 65
D+ +LD+P S +D+ + L + I+ + K+ +++TH + L+++
Sbjct: 122 EPDLAILDEPDSGLDIDALR-LVAEVINKLREEGKSVLIITHYQRLLDYI 170
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 29.0 bits (65), Expect = 0.23
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLKDK--TRILVTHQLQYLNHVDQ-IVFLNN 73
+ LLD+P +A+D + + D + + T ++VTHQ + + Q +VFL+N
Sbjct: 149 VLLLDEPFAALDPAL-RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 29.1 bits (66), Expect = 0.23
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV 65
+A++ N DI LLD+P + +D++ + L ED ++ ++ T I+++H +LN V
Sbjct: 168 QALFSNPDILLLDEPTNNLDINTIRWL-EDVLNE--RNSTMIIISHDRHFLNSV 218
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 28.7 bits (65), Expect = 0.24
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-----KTRILVTHQLQYLNHVDQIVF 70
K + L D+P ++D + + L + KT I+VTH + D+++
Sbjct: 151 KPPPLILADEPTGSLDPKNRDEVLD-----LLLELNDEGKTIIIVTHDPEVAKQADRVIE 205
Query: 71 L 71
L
Sbjct: 206 L 206
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 29.1 bits (65), Expect = 0.25
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHV 65
A++ D+ LLD+P + +D+H L + LK KT I+V+H ++LN V
Sbjct: 358 ALFIEPDLLLLDEPTNHLDLHAVLWLE----TYLLKWPKTFIVVSHAREFLNTV 407
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 28.7 bits (64), Expect = 0.27
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNNVSKT 77
D+ L+D+P SA+D + E+ + KD + I+VTH +Q + D+ F N
Sbjct: 187 DVILMDEPTSALD-PISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLN---- 241
Query: 78 SGWVEE 83
G+V E
Sbjct: 242 -GYVNE 246
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 28.5 bits (64), Expect = 0.29
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 16/63 (25%)
Query: 19 DIYLLDDPLSAVD------MHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIV 69
++LLD+PLS +D M + IS K +T I VTH Q++ + D+IV
Sbjct: 153 SVFLLDEPLSNLDAALRVQMRIE-------ISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Query: 70 FLN 72
L+
Sbjct: 206 VLD 208
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 28.5 bits (64), Expect = 0.31
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILV--THQLQYLNHV-DQIV 69
A+ + I +LD+P S +D+ + F D I LK++ R ++ +H +Q + + D+++
Sbjct: 147 ALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQ-LKNEGRAVIFSSHIMQEVEALCDRVI 204
Query: 70 FLNN 73
L+
Sbjct: 205 VLHK 208
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 28.3 bits (64), Expect = 0.41
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 15/63 (23%)
Query: 17 NADIYLLDDPLSAVD-------MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQI 68
N + L D+P SA+D + V K L E+ + T ++VTH++ + V D++
Sbjct: 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM-------TMVVVTHEMGFAREVADRV 205
Query: 69 VFL 71
+F+
Sbjct: 206 IFM 208
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 28.0 bits (63), Expect = 0.49
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQLQYLNHVDQIVFL 71
A+Y + + +LD+P S +D G+ I T +++ H+ L VD+I+ L
Sbjct: 486 ALYGDPFLVVLDEPNSNLD-SEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVL 544
Query: 72 NN 73
+
Sbjct: 545 QD 546
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 27.9 bits (63), Expect = 0.49
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLF-EDC---ISGFLKD-KTRILVTHQLQYLNHV-D 66
A DI L+D+ L+ D F E C + LK KT ILV+H + + D
Sbjct: 156 ATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210
Query: 67 QIVFL 71
+ + L
Sbjct: 211 RALVL 215
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 27.9 bits (63), Expect = 0.49
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQ 58
N I++LD+P +A+D LF + I L I TH
Sbjct: 145 NRPIWILDEPTAALDAA-AVALFAELIRAHLAQGGIVIAATHI 186
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 27.8 bits (62), Expect = 0.59
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFE--DCISGFLKDKTRILVTHQLQYLNHV-DQI 68
+A+ + + +LD+P + +D + L E + I KDKT IL TH +Q + + D++
Sbjct: 146 QALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRV 202
Query: 69 VFLN 72
+ +N
Sbjct: 203 IIIN 206
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 27.6 bits (62), Expect = 0.59
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQY-LNHV 65
A+ + I L D+P++++D K + + LKD T I+ HQ+ +
Sbjct: 161 ALVQQPKIILADEPVASLDPESAKKVMDI-----LKDINQEDGITVIVNLHQVDLAKKYA 215
Query: 66 DQIV 69
D+I+
Sbjct: 216 DRII 219
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 27.5 bits (62), Expect = 0.60
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 13 AVYKNADIYLLDDPLSAVD-------MHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNH 64
A+ + + L D+P++++D M + L + T I+ HQ+ +
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDL---LKRINRE---EGITVIVSLHQVDLAREY 211
Query: 65 VDQIVFLNN 73
D+IV L +
Sbjct: 212 ADRIVGLKD 220
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 27.4 bits (61), Expect = 0.70
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 16 KNADIYLLDDPLSAVD----MHVGKHLFEDCISGFL--KDKTRILVTHQLQYLNHVDQ-- 67
K+ADIYLLD+P + +D + K I F +KT +V H + ++++
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASK-----VIRRFAENNEKTAFVVEHDIIMIDYLADRL 186
Query: 68 IVF 70
IVF
Sbjct: 187 IVF 189
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 27.5 bits (61), Expect = 0.76
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK--TRILVTHQLQYLNHVDQIVFLNN 73
I +LD+ S +D GK I K T I +TH + N DQ++ L++
Sbjct: 163 KIIILDESTSMLDPA-GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDD 218
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 27.4 bits (61), Expect = 0.76
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQL 59
A I L+D+P SA+D + L +D + KT + V+H L
Sbjct: 183 APILLMDEPFSALDPLIRTQL-QDELLELQSKLKKTIVFVSHDL 225
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 27.5 bits (61), Expect = 0.78
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 LLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL-QYLNHVDQIVFLN 72
LLD+P + +DM + L E I ++ TH L Q + D++V LN
Sbjct: 136 LLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLN 187
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 27.5 bits (62), Expect = 0.79
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK---TRILVTHQLQYLNHV-DQIVFLN 72
+ ++ L D+P + +D + + +D I LK + T I+VTH L + D+I L
Sbjct: 154 DPELLLYDEPTAGLD-PIASGVIDDLIRS-LKKELGLTSIMVTHDLDTAFAIADRIAVLY 211
Query: 73 N 73
+
Sbjct: 212 D 212
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 27.3 bits (61), Expect = 0.85
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-----DKTRILVTHQLQ 60
+ I L+D+P A+D K L E+ + KT + VTH +
Sbjct: 153 DPPILLMDEPFGALDPITRKQLQEE----IKELQKELGKTIVFVTHDID 197
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.3 bits (60), Expect = 0.90
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
+ + D+ S +D G + E K KT + +TH L+ L+ D+I+ ++
Sbjct: 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 27.0 bits (60), Expect = 1.0
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 TGKSSCQ---LCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTH 57
TG S Q LC A+ + ++ L+D+P SA+D + E+ I ++ T ++VTH
Sbjct: 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD-PIATAKVEELIDELRQNYTIVIVTH 220
Query: 58 QLQYLNHVDQ 67
+Q V Q
Sbjct: 221 SMQQAARVSQ 230
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 27.1 bits (60), Expect = 1.0
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK---TRILVTHQLQYLNHV-DQIVFLN 72
N ++ LLD+P SA+D + E+ I LK+K T I +TH ++ + D FLN
Sbjct: 149 NPEVLLLDEPTSALD-PTSTEIIEELIVK-LKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 27.0 bits (60), Expect = 1.1
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
A+ N I + D+ SA+D + L + + +T I++ H+L + D+I+ L
Sbjct: 607 ALVGNPRILIFDEATSALDYE-SEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVL 664
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 26.9 bits (59), Expect = 1.1
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDC--ISGFLKDKTRILVTH-QLQYLNHVDQIVFL 71
D+ LLD+PLSA+D ++ ++ E+ + L + T + VTH Q L D+ +
Sbjct: 157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM 212
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 26.9 bits (60), Expect = 1.2
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLK-----DKTRILVTHQLQ-YLNHVDQIVFLN 72
+ L+D+P A+D L E+ F + KT + VTH + D+I +
Sbjct: 155 PLLLMDEPFGALDPITRDQLQEE----FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK 210
Query: 73 N 73
N
Sbjct: 211 N 211
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 26.9 bits (60), Expect = 1.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
A+ ++ LLD+P SA+D + E+ I+ T ++VTH +Q V D F+
Sbjct: 182 AIAIEPEVLLLDEPTSALD-PISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFM 240
Query: 72 N 72
Sbjct: 241 Y 241
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 26.7 bits (60), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 13 AVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDKTRILVTHQL 59
A+ ++AD Y D+P S +D ++V + I + K ++V H L
Sbjct: 226 ALLRDADFYFFDEPTSYLDIRQRLNVAR-----LIRELAEGKYVLVVEHDL 271
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/14 (64%), Positives = 13/14 (92%), Gaps = 1/14 (7%)
Query: 16 KNADIYLLDDPLSA 29
++AD+YLLD+P SA
Sbjct: 470 RDADLYLLDEP-SA 482
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 26.6 bits (59), Expect = 1.3
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRI---LVTHQLQYLNHV-DQI 68
A+ + + L+D+PL+A+D + L + I V+H LQ + + D++
Sbjct: 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAEFGIPILYVSHSLQEVLRLADRV 202
Query: 69 VFLNN 73
V L +
Sbjct: 203 VVLED 207
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 26.8 bits (60), Expect = 1.3
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR------ILVTH-QLQYLNHV 65
AV + LLD+ LSA+D + K + + LK R + VTH Q + L
Sbjct: 158 AVVNKPKVLLLDESLSALDYKLRKQMQNE-----LKALQRKLGITFVFVTHDQEEALTMS 212
Query: 66 DQIVFLNN 73
D+IV + +
Sbjct: 213 DRIVVMRD 220
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 26.7 bits (60), Expect = 1.4
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR--ILVTHQLQYLNHVDQI 68
A+ +A + +LD+P +A+ + + LF+ + LK + I ++H L+ V +I
Sbjct: 159 ALSFDARVLILDEPTAALTVKETERLFD--LIRRLKAQGVAIIYISH---RLDEVFEI 211
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 26.5 bits (59), Expect = 1.8
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-----TRILVTH 57
A+ + ++LLD+PLS +D L S K T I VTH
Sbjct: 147 ALVRKPKVFLLDEPLSNLD----AKLRVLMRSEIKKLHERLGTTTIYVTH 192
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 26.3 bits (58), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHL-FEDCISGFLKDKTRILVTH 57
A+ + + +LD+P + +D H +HL +E S + KT +L TH
Sbjct: 186 ALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 26.4 bits (58), Expect = 1.8
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
++G +LC A+ ++ LLD+P SA+D + E + ++ T ++VTH +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALD-PIATQRIEKLLEELSENYTIVIVTHNI 205
Query: 60 -QYLNHVDQIVFL 71
Q + D I F+
Sbjct: 206 GQAIRIADYIAFM 218
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 26.1 bits (57), Expect = 2.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
D+ LLD+P SA+D + E+ + T ILVTH + + + D+ F
Sbjct: 168 DVILLDEPTSALD-PISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFF 220
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 26.1 bits (58), Expect = 2.3
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV--DQIVFLNNV 74
++ LLD+P + +D+ E+ + F + T +LV+H +L+ V + + V
Sbjct: 457 PPNLLLLDEPTNHLDIE-SLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVEDKV 513
Query: 75 SKTSG 79
+ G
Sbjct: 514 EEFEG 518
Score = 25.7 bits (57), Expect = 3.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCIS---GFLKDKTR--ILVTHQLQYLNHV-DQIV 69
+ D+ LLD+P + HL + I +LK I+V+H +L++V I+
Sbjct: 170 EEPDLLLLDEPTN--------HLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHIL 221
Query: 70 FLNN 73
L+
Sbjct: 222 ELDR 225
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 26.1 bits (58), Expect = 2.4
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69
A+ +++ I +LD+ SA+D + + + K++T +++ H+L + D+I+
Sbjct: 494 ALLRDSPILILDEATSALDTE-SERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 26.1 bits (58), Expect = 2.5
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 16 KNADIYLLDDPLSAVDMH-------VGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQ- 67
+ AD+YLLD+P + +D+ V + E+ +KT ++V H + +++V
Sbjct: 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIEN------NEKTALVVDHDIYMIDYVSDR 525
Query: 68 -IVF 70
IVF
Sbjct: 526 LIVF 529
Score = 24.6 bits (54), Expect = 7.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 13 AVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQ 67
A+ ++AD+Y D+P S +D ++ + I +D K I+V H L L+++
Sbjct: 227 ALLRDADVYFFDEPSSYLDIRQRLNAAR-----VIRELAEDGKYVIVVEHDLAVLDYLSD 281
Query: 68 IV 69
V
Sbjct: 282 FV 283
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 26.0 bits (58), Expect = 2.7
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 19 DIYLLDDPLSAVDMHVGKHL--FEDCISGFLKD-KTRIL-VTHQLQYLNHV-DQIVFLNN 73
++ L+D+PL+++D+ + L + + ++ ++ IL V+H L + + D++V L
Sbjct: 148 ELLLMDEPLASLDLPRKRELLPYLERLA---REINIPILYVSHSLDEILRLADRVVVLEQ 204
Query: 74 VS-KTSGWVEEI 84
K G +EE+
Sbjct: 205 GKVKAFGPLEEV 216
>gnl|CDD|221362 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase. This
family of proteins represents tryptophan
dimethylallyltransferase (EC:2.5.1.34), which catalyzes
the first step of ergot alkaloid biosynthesis. Ergot
alkaloids, which are produced by endophyte fungi, can
enhance plant host fitness, but also cause livestock
toxicosis to host plants. This protein is found in
bacteria and eukaryotes. Proteins in this family are
typically between 390 to 465 amino acids in length.
Length = 358
Score = 25.7 bits (57), Expect = 2.9
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKH 37
TG+ +L FEA+ + + L L ++ ++
Sbjct: 178 TGQPVSELVFEAIRRLDEKGGLLPALDLLEEYLASR 213
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 25.9 bits (57), Expect = 3.1
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYLNHVDQIVF 70
A+ + DI +LD+ + D + ++ + LK+ KT ++H Y H D+++
Sbjct: 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLP-LLKEQGKTIFAISHDDHYFIHADRLLE 520
Query: 71 LNN 73
+ N
Sbjct: 521 MRN 523
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 25.8 bits (57), Expect = 3.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQ 60
+ DI L+D+ SA+D + + +D + KT + +TH L
Sbjct: 182 DPDILLMDEAFSALDPLIRTEM-QDELLELQAKLKKTIVFITHDLD 226
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 25.7 bits (56), Expect = 3.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
A+ + + +LD+P + +D H ++E S + KT +L TH ++
Sbjct: 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 25.8 bits (57), Expect = 3.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 20 IYLLDDPLSAVDMHVGK-------HLFEDCISGFLKDKTRILVTH-QLQYLNHVDQIVFL 71
I LLD+P A+D V K L E+ LK T + VTH Q + + D++V +
Sbjct: 157 ILLLDEPFGALDAQVRKELRRWLRQLHEE-----LK-FTSVFVTHDQEEAMEVADRVVVM 210
Query: 72 NN 73
+
Sbjct: 211 SQ 212
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 25.7 bits (57), Expect = 3.3
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK------TRILVTHQL 59
A+ ++ LLD+P SA+D + + LK I VTH L
Sbjct: 145 ALAAQPELLLLDEPFSALDRAL-----RLQLLPELKQIKKNLNIPVIFVTHDL 192
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 25.5 bits (56), Expect = 3.4
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK--TRILVTHQLQYLNHVDQIVFLN 72
N + +LD+ S +D ++L D + + T I +TH L D ++ +N
Sbjct: 160 NPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMN 216
>gnl|CDD|237521 PRK13820, PRK13820, argininosuccinate synthase; Provisional.
Length = 394
Score = 25.7 bits (57), Expect = 3.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 2 TGKSSCQLCFEAVYKNADI 20
TGK + QL FEAV++ +D+
Sbjct: 118 TGKGNDQLRFEAVFRASDL 136
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 25.3 bits (56), Expect = 4.2
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 18 ADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ 58
A +++LD+P +A+D G L ++ + +L THQ
Sbjct: 149 APLWILDEPFTALDKE-GVALLTALMAAHAAQGGIVLLTTHQ 189
>gnl|CDD|177609 PHA03372, PHA03372, DNA packaging terminase subunit 1; Provisional.
Length = 668
Score = 25.5 bits (56), Expect = 4.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 50 KTRILVTHQLQYLNHVDQIVFLNNVS 75
K +L L+YL HV I FL+ S
Sbjct: 171 KLPVLANRVLEYLLHVFDIEFLSESS 196
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 25.0 bits (55), Expect = 4.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK---TRILVTHQL 59
N I LLD+P SA+D+ + L E+ ++ + T + VTH
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREEL--KKIRKEFGVTVLHVTHDF 190
>gnl|CDD|235859 PRK06765, PRK06765, homoserine O-acetyltransferase; Provisional.
Length = 389
Score = 25.0 bits (55), Expect = 5.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK 50
K A++Y ++ + HLFE I FL K
Sbjct: 354 KYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNRK 388
>gnl|CDD|234206 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type.
Members of this protein family are mostly fungal
enzymes of secondary metabolite production.
Characterized or partially characterized members include
several examples of dimethylallyltryptophan synthase, a
brevianamide F prenyltransferase, LtxC from lyngbyatoxin
biosynthesis, and a probable dimethylallyl tyrosine
synthase.
Length = 404
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKH 37
TG S +L FEA+ + D L L ++ ++
Sbjct: 188 ATGVPSSELVFEAI-RRLDPKGLLPALDLLEEYLASR 223
>gnl|CDD|203307 pfam05693, Glycogen_syn, Glycogen synthase. This family consists
of the eukaryotic glycogen synthase proteins GYS1, GYS2
and GYS3. Glycogen synthase (GS) is the enzyme
responsible for the synthesis of -1,4-linked glucose
chains in glycogen. It is the rate limiting enzyme in
the synthesis of the polysaccharide, and its activity is
highly regulated through phosphorylation at multiple
sites and also by allosteric effectors, mainly glucose
6-phosphate (G6P).
Length = 633
Score = 25.1 bits (55), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRIL 54
E++ A I L D ++ + VGK +FE C+ G L + +L
Sbjct: 348 ESLKGQAVIKQLRDTVNEIKEKVGKRIFESCLRGHLPEMDELL 390
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 24.9 bits (54), Expect = 6.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 20 IYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
I L D+ + D + +E+ + + KT I+++H QY DQI+ L
Sbjct: 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 24.8 bits (55), Expect = 6.7
Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVD 66
+ +LD+P S +D+ K + + I+ + + +++TH + L+++
Sbjct: 164 KLAILDEPDSGLDIDALK-IVAEGINALREEGRGVLIITHYQRLLDYIK 211
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 24.6 bits (54), Expect = 6.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 13 AVYKNADIYLLDDPLS 28
A+ K + LLD+P +
Sbjct: 104 ALLKKPKLLLLDEPTA 119
>gnl|CDD|223966 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit
[Energy production and conversion].
Length = 332
Score = 24.6 bits (54), Expect = 7.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 TGKSSCQLCFEAVYKNADI 20
G C++C + V + ADI
Sbjct: 236 YGPEGCRVCTDFVAELADI 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,216,901
Number of extensions: 327318
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 170
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)