RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1506
(85 letters)
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 134 bits (339), Expect = 2e-41
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 203
Query: 73 N 73
Sbjct: 204 E 204
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 134 bits (339), Expect = 6e-41
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ K +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73 N 73
Sbjct: 233 E 233
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 129 bits (326), Expect = 2e-39
Identities = 41/63 (65%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIVF 70
AVY NADIYL DDPLSAVD HVGKH+FE+ I G LK+KTRILVTH + YL VD I+
Sbjct: 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIV 200
Query: 71 LNN 73
++
Sbjct: 201 MSG 203
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 44.2 bits (105), Expect = 6e-07
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNNV 74
+ AD+Y+ D P S +D+ ++ I LK+K I+V H L L+++ D I +
Sbjct: 155 READVYIFDQPSSYLDVRERMNM-AKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213
Query: 75 SKTSGWVEEIL 85
S G V +
Sbjct: 214 SSVYGRVSKSY 224
Score = 31.9 bits (73), Expect = 0.013
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV- 65
+ K AD+Y+LD P S +D+ ++ +K ++ H L +++
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEE-----RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453
Query: 66 DQIVFLNNVSKTSGWVEEIL 85
D+I+ + +G +
Sbjct: 454 DRIIVFKGEPEKAGLATSPV 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 41.4 bits (98), Expect = 5e-06
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ K + +LDD S+VD K + + + + K T ++T ++ D+I+ L+
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLH 551
Query: 73 N 73
Sbjct: 552 E 552
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 40.0 bits (94), Expect = 2e-05
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHV-DQIVFLNN 73
+ AD+Y+ D+P S +D+ + + I L K I V H L L+++ D + +
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296
Query: 74 VSKTSGWVEEIL 85
V G V
Sbjct: 297 VPSVYGVVTLPA 308
Score = 31.9 bits (73), Expect = 0.011
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV- 65
A+ ADIYL+D+P + +D S ++ KT +V H ++
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRII-----CSKVIRRFILHNKKTAFIVEHDFIMATYLA 535
Query: 66 DQIVFLNN 73
D+++
Sbjct: 536 DKVIVFEG 543
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 38.1 bits (89), Expect = 8e-05
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +N I LLD+ SA+D + + + + + +T I++ H+L + + D I +
Sbjct: 540 ALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD 598
Query: 73 N 73
Sbjct: 599 G 599
Score = 30.0 bits (68), Expect = 0.060
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ + I LLD+ SA+D K + ++ + + +T I++ H+L + + D IV +
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEK-VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243
Query: 73 N 73
N
Sbjct: 1244 N 1244
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 37.5 bits (88), Expect = 1e-04
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFE--DCISGFLKD--KTRILVTHQLQYLNHV----DQI 68
+ LLD+P SA+D+ + + + T + TH N V ++
Sbjct: 146 ECKLILLDEPTSALDL---ANQDIVLSLLIDLAQSQNMTVVFTTH---QPNQVVAIANKT 199
Query: 69 VFLNNVSKTSGWVEEIL 85
+ LN + G IL
Sbjct: 200 LLLNKQNFKFGETRNIL 216
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 37.7 bits (88), Expect = 1e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTH-QLQYLNHVDQIV 69
A+ +I LD+P VD + ++K+ K ILVTH + +
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISR-----YIKEYGKEGILVTHELDMLNLYKEYKA 196
Query: 70 FLNNVSKT--SGWVEEIL 85
+ ++ V E+L
Sbjct: 197 YFLVGNRLQGPISVSELL 214
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 36.4 bits (85), Expect = 3e-04
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
+ K I LLD+ SA+D + + + ++ ++T I+V H+L + + DQI+ +
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 73 N 73
+
Sbjct: 263 D 263
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
+ K+ I + D+ S++D ++LF+ + K++T I++ H+L ++ + I+ LN
Sbjct: 169 CLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLN 227
Query: 73 N 73
Sbjct: 228 K 228
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A +N I +LD+ +++D + + + + +K +T +++ H+L + D+I F+
Sbjct: 153 AFLRNPKILMLDEATASLDSE-SESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
Query: 73 N 73
Sbjct: 212 K 212
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 34.5 bits (80), Expect = 0.001
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR---ILVTHQLQ-YLNHVDQIVFL 71
+ +LD+P + +D + + I VTH ++ + +I+ L
Sbjct: 178 GQPQVLILDEPAAGLDFI-ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236
Query: 72 NN 73
+
Sbjct: 237 KD 238
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 33.8 bits (78), Expect = 0.003
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHV-DQIVFL 71
+ A Y D+P S +D+ + I K ++V H L L+++ D I +
Sbjct: 245 RKAHFYFFDEPSSYLDIRQRLKV-ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
Score = 30.7 bits (70), Expect = 0.037
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLNHV-DQIV 69
+ ++ADIYLLD+P + +D+ + I ++ +KT ++V H + +++V D+++
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAV-SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543
Query: 70 FLNNVSKTSGWVEEIL 85
G +
Sbjct: 544 VFEGEPGRHGRALPPM 559
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 33.1 bits (75), Expect = 0.005
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
+ + +LD+P +D + L K ILV+H + + D ++ +
Sbjct: 267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326
Query: 72 NNVSKTSG 79
+ + +S
Sbjct: 327 SLENGSSK 334
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 32.2 bits (74), Expect = 0.010
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +++ I +LD+ SA+D + + + K++T +++ H+L + D+IV +
Sbjct: 494 ALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
Query: 73 N 73
+
Sbjct: 553 D 553
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 32.2 bits (74), Expect = 0.011
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ ++A + +LD+ SA+D + + + K+KT +++ H+L + D+I+ ++
Sbjct: 494 ALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVD 552
Query: 73 N 73
Sbjct: 553 E 553
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 31.7 bits (73), Expect = 0.012
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ N I + D+ SA+D +H+ + K +T I++ H+L + + D+I+ +
Sbjct: 159 ALVNNPKILIFDEATSALDYE-SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVME 217
Query: 73 N 73
Sbjct: 218 K 218
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.9 bits (73), Expect = 0.014
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHV-DQIVFLNN 73
+NA Y D+P S +D+ + I + K+ ++V H L L+++ D I +
Sbjct: 175 RNATFYFFDEPSSYLDIRQRLNA-ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233
Query: 74 VSKTSGWVEE 83
G +
Sbjct: 234 EPGVYGIFSQ 243
Score = 31.1 bits (71), Expect = 0.022
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV- 65
+ ++ADIYLLD+P + +D+ +S ++ KT ++V H + +++V
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLA-----VSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469
Query: 66 DQIVFLNNVSKTSGWVEEIL 85
D+++ G +
Sbjct: 470 DRLMVFEGEPGKYGRALPPM 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.9 bits (72), Expect = 0.015
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
AV +NADI LLD+P + +D L + ++ T I ++H +L++V + I+
Sbjct: 562 AVLRNADILLLDEPTNHLDTVNVAWL-VNYLNTC--GITSITISHDSVFLDNVCEYIINY 618
Query: 72 NN 73
Sbjct: 619 EG 620
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.9 bits (68), Expect = 0.078
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
N I +LD+ SA+D+ + E + KD+T ++V H+L + H D+IV +
Sbjct: 491 IFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIE 549
Query: 73 N 73
N
Sbjct: 550 N 550
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 29.1 bits (66), Expect = 0.12
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 19/80 (23%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHL-FEDCISGFLKD------KTRILVTH-QLQYLNH 64
A+ + LLD+PLSAVD+ L E L+ + VTH ++
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEE------LRFVQREFDVPILHVTHDLIEAAML 193
Query: 65 VDQIVFLNNVSKTSGWVEEI 84
D++ + N G + E
Sbjct: 194 ADEVAVMLN-----GRIVEK 208
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 29.1 bits (66), Expect = 0.13
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 LLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTH-QLQYLNHVDQIVFLNN 73
LLD+P SA+D + + + ED + L+ K+ + V+H + + L + D+I +
Sbjct: 161 LLDEPFSALDEQLRRQIRED-MIAALRANGKSAVFVSHDREEALQYADRIAVMKQ 214
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 27.9 bits (63), Expect = 0.26
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQY-LNHVDQIVFLNN 73
DI +LD+PL +D GK + + KT IL++H ++ +NHVD++V L
Sbjct: 158 DILILDEPLVGLDR-EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK 213
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 27.9 bits (63), Expect = 0.28
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 13 AVYKNADIYLLDDPLSAVDMH----VGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
A+ + + +LD+ SA+D V + L +T +L+T QL I
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLL--YESPE-WASRTVLLITQQLSLAERAHHI 226
Query: 69 VFLNN 73
+FL
Sbjct: 227 LFLKE 231
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 28.0 bits (63), Expect = 0.35
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 22 LLDDPLSAVDMHVGKHL-FEDCISGFLKD------KTRILVTH-QLQYLNHVDQIVFLNN 73
L D+P +A+D + + L ++ T + VTH Q + L D+++ L+
Sbjct: 168 LFDEPFAAIDTQIRRELRTF------VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHE 221
Query: 74 VSKTSGWVEEI 84
G VE+
Sbjct: 222 -----GNVEQF 227
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.0 bits (60), Expect = 0.73
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 1 MTGKSSCQLCFEAVY--KNADIYLLD--DPLSAVDM 32
+T + S +LC + +N DI+ + L +
Sbjct: 235 VTPQESGELCLMSCIFGENRDIFFPKLSEALHLISF 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 26.7 bits (60), Expect = 0.89
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQY-LNHVDQIVFLNN 73
+ +LD+P + +D +G + K+ T I+ TH + + D + +
Sbjct: 163 KVLILDEPTAGLDP-MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Length = 667
Score = 26.2 bits (58), Expect = 1.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 9 LCFEAVYKNADIYL 22
L F+ V AD+++
Sbjct: 70 LRFDGVNSIADVFI 83
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 26.2 bits (58), Expect = 1.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 9 LCFEAVYKNADIYL 22
L FE V A++Y+
Sbjct: 81 LRFEGVGACAEVYV 94
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A
{Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1
b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A*
2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Length = 848
Score = 26.2 bits (57), Expect = 1.4
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 3 GKSSCQLCFEAVYKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILV 55
+ QL FE + AD+YL L D M VG + + L+ L
Sbjct: 80 NRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVG-YTLP--VKSVLRKGENHLY 130
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 26.2 bits (58), Expect = 1.4
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
+V A I LLD+P + +D + + + D T IL +++ + DQ + +
Sbjct: 169 SVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIE 227
Query: 73 N 73
Sbjct: 228 E 228
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2,
protein struct initiative; 1.80A {Bacteroides fragilis}
Length = 249
Score = 25.8 bits (56), Expect = 1.6
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 26 PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK 76
P ++ + I + + V+H + Q+ L+ SK
Sbjct: 160 PKDKLEPDGLPWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSK 210
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 25.6 bits (57), Expect = 2.4
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ KN I LLD+ SA+D ++L ++ + + +T +++ H+L + + + + L+
Sbjct: 497 ALLKNPKILLLDEATSALDAE-NEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLD 555
Query: 73 N 73
Sbjct: 556 Q 556
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 24.7 bits (54), Expect = 4.4
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 9 LCFEAVYKNADIYL 22
+ FE VY N+++++
Sbjct: 87 ILFEGVYLNSEVWI 100
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 24.5 bits (54), Expect = 5.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 4 KSSCQLCFEAVYKNADIYL 22
+ Q ++A+ N DIY
Sbjct: 123 YKASQAIWQAMVANGDIYK 141
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 24.5 bits (54), Expect = 5.7
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 4 KSSCQLCFEAVYKNADIYL 22
+ + ++ + DIYL
Sbjct: 110 YEASKAIWKRMADAGDIYL 128
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 219
Score = 24.3 bits (51), Expect = 5.8
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD 49
VY Y++ DP +++M + +LF++ + +++
Sbjct: 170 LAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVEN 217
>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A
{Haemonchus contortus}
Length = 204
Score = 24.2 bits (53), Expect = 6.0
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 11 FEAVYK-NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD 49
+ K N YL+ D L+ D++V + F +
Sbjct: 136 VTKILKENKTGYLVGDSLTFADLYVAEMGFTEHYPKLYDG 175
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 24.1 bits (53), Expect = 7.0
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 22 LLDDPLSAVDMHVGKHL-FEDCISGFLKD------KTRILVTH 57
LLD+PLSA+D ++ L T + +TH
Sbjct: 150 LLDEPLSALDPRTQENAREM------LSVLHKKNKLTVLHITH 186
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 24.1 bits (53), Expect = 7.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 4 KSSCQLCFEAVYKNADIYL 22
K QL + VY+ DIY
Sbjct: 101 KKVVQLVLKKVYEAGDIYY 119
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 24.1 bits (53), Expect = 7.4
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 4 KSSCQLCFEAVYKNADIYL 22
Q FE YK DIYL
Sbjct: 103 VKFVQKVFEECYKRGDIYL 121
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 24.2 bits (53), Expect = 7.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 13 AVYKNADIYLLDDPLSAVD 31
A+ K+ + LLD+P S +D
Sbjct: 154 ALVKDPSLLLLDEPFSNLD 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,288,190
Number of extensions: 61113
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 49
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)