RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1506
(85 letters)
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 65.3 bits (159), Expect = 4e-15
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
AVYK+AD+YLLD P +D+ + +FE C+ + +KTRILVT ++++L D+I+ L+
Sbjct: 172 AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
Query: 73 N 73
Sbjct: 232 Q 232
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 62.2 bits (151), Expect = 5e-14
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ +++ I +LD+ SA+D + + + K++T +++ H+L + D+IV +
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224
Query: 73 N 73
+
Sbjct: 225 D 225
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 58.6 bits (142), Expect = 1e-12
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
N I +LD+ SA+D+ + E + KD+T ++V H+L + H D+IV +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIE 226
Query: 73 N 73
N
Sbjct: 227 N 227
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 54.2 bits (130), Expect = 5e-11
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A+ N I + D+ SA+D + + + K +T I++ H+L + + D+I+ +
Sbjct: 153 ALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVME 211
Query: 73 N 73
Sbjct: 212 K 212
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 53.4 bits (128), Expect = 1e-10
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFL 71
A+ + + +LDD SA+D + + + + ++ +L+T L + D I+FL
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFL 224
Query: 72 NN 73
Sbjct: 225 EG 226
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 52.6 bits (126), Expect = 2e-10
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
A +N I +LD+ +++D + + + +K +T +++ H+L + D+I F+
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMV-QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
Query: 73 N 73
Sbjct: 212 K 212
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 42.5 bits (100), Expect = 9e-07
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
A+ D+ L D+P SA+D + + + KT ++VTH++ + HV ++FL
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 222
Query: 72 NN 73
+
Sbjct: 223 HQ 224
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 38.3 bits (89), Expect = 2e-05
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYLNHVDQIVF 70
A+ N I L D P A+D G+ + + + ++ KT ++VTH + ++I++
Sbjct: 159 ALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIY 217
Query: 71 LNN 73
L +
Sbjct: 218 LKD 220
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 37.8 bits (86), Expect = 4e-05
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK 76
+ +LD+P +D + L K ILV+H + + D ++ ++ +
Sbjct: 225 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENG 284
Query: 77 TSGWVEEI 84
+S VE +
Sbjct: 285 SSK-VEVV 291
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 37.1 bits (84), Expect = 7e-05
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
+ + +LD+P +D + L K ILV+H + + D ++ +
Sbjct: 297 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 356
Query: 72 NNVSKTSGWVEEI 84
+ + +S VE +
Sbjct: 357 SLENGSSK-VEVV 368
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 35.3 bits (81), Expect = 2e-04
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74
NA+IY+LDDP+ A+D + + I LK+K ++++ + + L++ D L+
Sbjct: 141 LVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSR-EELSYCDVNENLHKY 198
Query: 75 S 75
S
Sbjct: 199 S 199
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 34.9 bits (80), Expect = 4e-04
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNHVDQIVFLN 72
+ N + ++D+P++ V + +F + K T +++ H+L LN++D + +
Sbjct: 165 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 73 N 73
N
Sbjct: 225 N 225
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 33.6 bits (77), Expect = 0.001
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-GFLKDKTRILVTHQLQYLNHV-DQIVF 70
A+ D+ L+D+PLS +D + + + T I VTH + D+I
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 209
Query: 71 LNN 73
+N
Sbjct: 210 MNR 212
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 33.0 bits (75), Expect = 0.002
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
A+ N + +LD+P S +D+ + + + + T ++ +H + + + D+I +
Sbjct: 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 206
Query: 72 NN 73
+N
Sbjct: 207 HN 208
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 30.7 bits (69), Expect = 0.012
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNHVDQIVFL 71
A+ + ++D+P + + +FE + T +LV L L
Sbjct: 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL 212
Query: 72 NN 73
Sbjct: 213 ET 214
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 0.036
Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
+ + EA + ++D+ +++ K + +
Sbjct: 83 LAIPILERAYREAKKDRRKVIIIDEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141
Query: 61 YLNHVDQIVFLNN 73
V +I L
Sbjct: 142 VHPLVKEIRRLPG 154
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 26.6 bits (57), Expect = 0.41
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV 69
Y+ + ++LD+ +A+D+ + + D I+++ + D +V
Sbjct: 352 YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 406
>d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex;
beta-sheet shell regions {Lamprey (Ichthyomyzon
unicuspis) [TaxId: 30308]}
Length = 452
Score = 22.8 bits (48), Expect = 9.3
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLF 39
++CF A +NA ++ + L + G ++
Sbjct: 401 SKVCFSARLRNAA-FIRNALLYKI---TGDYVS 429
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 322,029
Number of extensions: 12133
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 20
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.9 bits)