BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15061
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 53  CELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLV 111
           C +C++D A    +R L C H++H SC+  +  Q  S        CP C+  L   N   
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS--------CPVCRKSLTGQNTAT 69

Query: 112 SP 113
           +P
Sbjct: 70  NP 71


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 53  CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCKTGLF 105
           C +CRK      C   TC  VYH  CL+      P  T P G + CP+C+  + 
Sbjct: 8   CSVCRKSGQLLMCD--TCSRVYHLDCLDP-----PLKTIPKGMWICPRCQDQML 54


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 47  SDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCK 101
           S +   C +CRK      C   TC  VYH  CL+      P  T P G + CP+C+
Sbjct: 6   SGHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDP-----PLKTIPKGMWICPRCQ 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,783,063
Number of Sequences: 62578
Number of extensions: 259375
Number of successful extensions: 520
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 8
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)