Query psy15061
Match_columns 226
No_of_seqs 170 out of 858
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 19:27:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3970|consensus 100.0 2.8E-85 6.1E-90 577.3 9.2 207 1-226 1-237 (299)
2 PF13639 zf-RING_2: Ring finge 99.3 1.4E-12 3.1E-17 86.7 1.6 42 52-101 2-44 (44)
3 KOG4628|consensus 99.2 7.3E-12 1.6E-16 116.9 3.3 52 51-109 230-282 (348)
4 PF12678 zf-rbx1: RING-H2 zinc 98.9 1.7E-09 3.6E-14 80.0 3.5 54 39-101 9-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 98.8 1.9E-09 4E-14 102.1 3.5 49 49-105 286-345 (491)
6 COG5540 RING-finger-containing 98.8 2.6E-09 5.7E-14 98.8 3.9 53 48-107 321-374 (374)
7 cd00162 RING RING-finger (Real 98.8 8.4E-09 1.8E-13 65.5 4.2 44 52-104 1-45 (45)
8 PHA02929 N1R/p28-like protein; 98.7 1.5E-08 3.2E-13 90.6 4.5 48 50-105 174-227 (238)
9 PF12861 zf-Apc11: Anaphase-pr 98.6 4.5E-08 9.7E-13 75.5 4.0 50 50-104 21-81 (85)
10 smart00184 RING Ring finger. E 98.5 1.2E-07 2.5E-12 58.1 3.6 39 53-100 1-39 (39)
11 PLN03208 E3 ubiquitin-protein 98.5 2E-07 4.4E-12 81.3 5.2 56 49-106 17-80 (193)
12 KOG0802|consensus 98.4 9.1E-08 2E-12 93.2 2.4 52 49-108 290-344 (543)
13 PF00097 zf-C3HC4: Zinc finger 98.4 2E-07 4.4E-12 60.5 2.1 41 53-100 1-41 (41)
14 PF13923 zf-C3HC4_2: Zinc fing 98.3 2.2E-07 4.8E-12 60.5 2.0 39 53-100 1-39 (39)
15 PF15227 zf-C3HC4_4: zinc fing 98.3 3.7E-07 7.9E-12 61.2 2.7 42 53-100 1-42 (42)
16 PF13920 zf-C3HC4_3: Zinc fing 98.2 9.3E-07 2E-11 60.2 2.5 46 50-105 2-48 (50)
17 KOG0317|consensus 98.2 9.2E-07 2E-11 81.2 2.7 49 50-108 239-287 (293)
18 COG5194 APC11 Component of SCF 98.2 1.7E-06 3.7E-11 66.6 3.6 48 49-104 30-80 (88)
19 smart00504 Ubox Modified RING 98.1 7.1E-06 1.5E-10 57.0 5.6 59 52-123 3-61 (63)
20 PF14634 zf-RING_5: zinc-RING 98.0 5E-06 1.1E-10 55.5 3.5 43 52-102 1-44 (44)
21 smart00744 RINGv The RING-vari 98.0 5.1E-06 1.1E-10 57.5 3.5 44 52-101 1-49 (49)
22 PF13445 zf-RING_UBOX: RING-ty 98.0 3.9E-06 8.4E-11 56.9 2.5 41 53-98 1-43 (43)
23 TIGR00599 rad18 DNA repair pro 97.9 1.4E-05 3E-10 76.3 6.0 63 50-122 26-88 (397)
24 KOG0320|consensus 97.9 5.3E-06 1.2E-10 71.9 2.5 47 51-105 132-178 (187)
25 KOG1734|consensus 97.9 2.6E-06 5.6E-11 78.2 0.1 67 50-122 224-308 (328)
26 KOG0823|consensus 97.9 8.8E-06 1.9E-10 72.7 3.3 49 51-106 48-96 (230)
27 PF11793 FANCL_C: FANCL C-term 97.9 1.8E-06 4E-11 63.5 -0.9 54 51-104 3-65 (70)
28 PHA02926 zinc finger-like prot 97.8 1.3E-05 2.9E-10 71.7 3.1 54 50-105 170-230 (242)
29 KOG1493|consensus 97.8 4.4E-06 9.5E-11 63.9 -0.0 48 51-103 21-79 (84)
30 KOG0828|consensus 97.6 2.9E-05 6.3E-10 76.2 1.9 50 50-106 571-635 (636)
31 KOG1940|consensus 97.5 3.4E-05 7.4E-10 70.7 1.7 52 34-102 151-204 (276)
32 KOG0827|consensus 97.4 7.4E-05 1.6E-09 71.6 2.1 46 50-101 4-52 (465)
33 COG5574 PEX10 RING-finger-cont 97.4 9.3E-05 2E-09 67.5 2.5 51 50-109 215-266 (271)
34 KOG0804|consensus 97.3 7.7E-05 1.7E-09 72.3 1.2 47 50-106 175-223 (493)
35 KOG2164|consensus 97.3 0.00018 3.9E-09 70.5 3.2 52 50-106 186-237 (513)
36 KOG1952|consensus 97.2 0.00013 2.8E-09 75.2 1.7 51 51-102 192-244 (950)
37 PF04564 U-box: U-box domain; 97.2 0.00027 5.9E-09 51.9 2.9 47 52-107 6-52 (73)
38 KOG2930|consensus 97.2 0.00013 2.8E-09 58.7 0.7 31 65-103 75-106 (114)
39 KOG2177|consensus 97.1 0.00039 8.4E-09 57.3 3.5 65 50-126 13-77 (386)
40 PF10367 Vps39_2: Vacuolar sor 97.1 0.0002 4.4E-09 54.0 1.3 32 49-80 77-108 (109)
41 KOG0825|consensus 97.0 0.00011 2.4E-09 75.4 -0.8 92 23-130 101-200 (1134)
42 TIGR00570 cdk7 CDK-activating 97.0 0.0014 2.9E-08 61.1 6.2 51 50-107 3-56 (309)
43 KOG1941|consensus 96.7 0.00053 1.2E-08 66.1 0.6 46 50-101 365-412 (518)
44 KOG1645|consensus 96.7 0.0017 3.6E-08 62.8 3.9 49 49-103 3-54 (463)
45 KOG0287|consensus 96.5 0.0019 4.1E-08 61.4 3.3 73 51-136 24-96 (442)
46 COG5219 Uncharacterized conser 96.4 0.00097 2.1E-08 69.9 0.5 48 51-104 1470-1522(1525)
47 PF14835 zf-RING_6: zf-RING of 96.4 0.0011 2.5E-08 49.0 0.6 56 51-118 8-64 (65)
48 KOG0978|consensus 96.0 0.0028 6.1E-08 64.5 1.3 47 51-106 644-690 (698)
49 PF11789 zf-Nse: Zinc-finger o 95.8 0.0048 1E-07 44.0 1.6 44 48-99 9-53 (57)
50 KOG4445|consensus 95.8 0.003 6.6E-08 59.2 0.5 83 40-122 104-216 (368)
51 KOG3268|consensus 95.7 0.0064 1.4E-07 53.6 2.4 65 40-106 155-229 (234)
52 KOG1428|consensus 95.7 0.0061 1.3E-07 66.6 2.5 59 47-106 3483-3545(3738)
53 KOG4265|consensus 95.6 0.0092 2E-07 56.5 3.0 50 48-107 288-338 (349)
54 KOG0801|consensus 95.1 0.0062 1.4E-07 52.9 0.2 61 16-76 133-204 (205)
55 COG5432 RAD18 RING-finger-cont 94.8 0.017 3.7E-07 54.2 2.2 44 51-104 26-69 (391)
56 KOG0824|consensus 94.5 0.023 5E-07 53.1 2.3 48 49-105 6-53 (324)
57 KOG2034|consensus 94.1 0.023 5E-07 59.2 1.6 37 50-86 817-853 (911)
58 KOG1002|consensus 94.0 0.027 5.8E-07 56.5 1.8 73 29-106 514-587 (791)
59 PF12906 RINGv: RING-variant d 93.7 0.03 6.5E-07 38.3 1.0 42 53-100 1-47 (47)
60 KOG0311|consensus 93.5 0.015 3.2E-07 55.4 -1.0 49 50-106 43-91 (381)
61 PHA02862 5L protein; Provision 92.9 0.082 1.8E-06 45.0 2.6 48 50-105 2-53 (156)
62 smart00249 PHD PHD zinc finger 92.8 0.053 1.1E-06 34.4 1.2 46 52-100 1-47 (47)
63 KOG4185|consensus 92.3 0.17 3.7E-06 45.3 4.1 47 51-104 4-54 (296)
64 KOG2879|consensus 92.3 0.13 2.9E-06 47.7 3.4 51 49-106 238-288 (298)
65 KOG1039|consensus 92.2 0.093 2E-06 49.7 2.4 54 50-104 161-220 (344)
66 PHA02825 LAP/PHD finger-like p 92.2 0.15 3.2E-06 43.9 3.3 49 48-105 6-59 (162)
67 KOG1814|consensus 91.9 0.17 3.7E-06 49.2 3.8 52 51-102 185-237 (445)
68 KOG4172|consensus 91.5 0.062 1.3E-06 39.2 0.2 47 49-104 6-53 (62)
69 KOG2114|consensus 91.4 0.11 2.3E-06 54.3 2.0 40 51-102 841-880 (933)
70 PF05883 Baculo_RING: Baculovi 91.1 0.085 1.8E-06 44.1 0.8 34 50-83 26-66 (134)
71 KOG2660|consensus 90.9 0.12 2.7E-06 48.7 1.7 49 49-106 14-62 (331)
72 KOG0309|consensus 90.8 0.19 4.1E-06 52.4 3.0 37 51-87 1029-1065(1081)
73 KOG1785|consensus 90.3 0.11 2.4E-06 50.8 0.8 48 51-106 370-417 (563)
74 PF14570 zf-RING_4: RING/Ubox 90.2 0.21 4.5E-06 35.0 1.9 44 53-103 1-46 (48)
75 KOG2817|consensus 89.4 0.32 7E-06 46.9 3.2 50 51-105 335-385 (394)
76 PF04641 Rtf2: Rtf2 RING-finge 89.1 0.58 1.3E-05 42.0 4.5 49 49-106 112-162 (260)
77 COG5152 Uncharacterized conser 88.1 0.23 4.9E-06 44.7 1.1 52 51-112 197-248 (259)
78 KOG3039|consensus 86.3 0.66 1.4E-05 42.9 3.1 48 51-106 222-271 (303)
79 KOG1813|consensus 85.5 0.46 9.9E-06 44.6 1.7 49 51-109 242-290 (313)
80 PF14447 Prok-RING_4: Prokaryo 85.3 0.38 8.2E-06 34.7 0.8 46 51-108 8-53 (55)
81 PF07800 DUF1644: Protein of u 85.2 1.4 3.1E-05 38.0 4.4 54 50-105 2-91 (162)
82 PF08746 zf-RING-like: RING-li 84.9 0.52 1.1E-05 31.7 1.3 42 53-100 1-43 (43)
83 KOG3053|consensus 84.8 0.56 1.2E-05 43.4 1.9 70 48-118 18-98 (293)
84 PF00628 PHD: PHD-finger; Int 84.6 0.046 9.9E-07 36.7 -4.0 48 52-101 1-49 (51)
85 KOG1571|consensus 84.1 0.54 1.2E-05 44.9 1.5 43 50-105 305-347 (355)
86 KOG4159|consensus 83.3 0.82 1.8E-05 44.2 2.4 46 51-106 85-130 (398)
87 KOG0297|consensus 83.1 1.1 2.4E-05 42.8 3.1 53 48-110 19-72 (391)
88 PF13901 DUF4206: Domain of un 81.4 0.76 1.7E-05 40.0 1.3 38 51-101 153-196 (202)
89 KOG3800|consensus 80.7 1.6 3.6E-05 40.8 3.3 48 52-106 2-52 (300)
90 PF00643 zf-B_box: B-box zinc 80.4 0.71 1.5E-05 29.8 0.6 34 3-36 5-38 (42)
91 smart00132 LIM Zinc-binding do 79.8 1.8 3.9E-05 26.4 2.3 37 52-104 1-37 (39)
92 PF02891 zf-MIZ: MIZ/SP-RING z 78.2 2.5 5.3E-05 29.3 2.8 44 52-103 4-50 (50)
93 PF14446 Prok-RING_1: Prokaryo 77.4 2.7 5.9E-05 30.2 2.9 34 49-82 4-39 (54)
94 PF00412 LIM: LIM domain; Int 75.2 1.4 3E-05 29.7 0.9 39 53-107 1-39 (58)
95 PF06906 DUF1272: Protein of u 72.9 5.8 0.00013 28.9 3.6 49 49-107 4-54 (57)
96 COG5109 Uncharacterized conser 71.6 2.9 6.2E-05 40.0 2.3 45 51-100 337-382 (396)
97 KOG4739|consensus 70.9 1.5 3.2E-05 39.8 0.3 42 53-105 6-48 (233)
98 COG5220 TFB3 Cdk activating ki 70.0 1.6 3.5E-05 40.4 0.3 46 50-102 10-61 (314)
99 KOG2066|consensus 69.5 1.8 3.9E-05 45.3 0.6 37 49-85 783-824 (846)
100 COG5222 Uncharacterized conser 68.3 3.9 8.4E-05 39.0 2.4 43 51-102 275-318 (427)
101 KOG0827|consensus 67.3 0.48 1E-05 46.1 -3.8 48 50-105 196-245 (465)
102 COG5236 Uncharacterized conser 66.4 5.3 0.00011 38.8 2.9 46 50-103 61-106 (493)
103 KOG1829|consensus 65.4 1.5 3.2E-05 44.4 -1.0 39 51-100 512-556 (580)
104 KOG3005|consensus 62.3 4.5 9.7E-05 37.6 1.6 52 51-102 183-240 (276)
105 KOG1815|consensus 62.1 2.4 5.2E-05 40.8 -0.2 63 24-86 189-268 (444)
106 TIGR00373 conserved hypothetic 62.1 5.6 0.00012 33.4 2.0 29 94-124 128-156 (158)
107 PRK06266 transcription initiat 61.0 7.3 0.00016 33.5 2.6 30 94-125 136-165 (178)
108 KOG3002|consensus 60.7 7.5 0.00016 36.3 2.8 57 51-122 49-105 (299)
109 PHA03096 p28-like protein; Pro 60.4 5.4 0.00012 36.9 1.8 47 51-102 179-231 (284)
110 PRK14890 putative Zn-ribbon RN 59.3 9.1 0.0002 28.0 2.4 46 49-101 6-55 (59)
111 COG5175 MOT2 Transcriptional r 59.1 11 0.00023 36.7 3.6 54 49-110 13-68 (480)
112 KOG1609|consensus 55.7 5.4 0.00012 35.2 0.9 51 51-107 79-136 (323)
113 KOG4275|consensus 54.6 2 4.4E-05 40.6 -2.0 42 50-105 300-342 (350)
114 KOG2071|consensus 52.1 6.9 0.00015 39.7 1.1 42 44-85 507-559 (579)
115 KOG2932|consensus 51.4 5.2 0.00011 38.3 0.1 66 51-128 91-164 (389)
116 KOG1701|consensus 50.9 3.4 7.4E-05 40.7 -1.2 91 9-109 311-409 (468)
117 KOG1812|consensus 50.8 15 0.00032 35.2 3.1 70 50-124 146-221 (384)
118 KOG4362|consensus 50.1 6.3 0.00014 40.8 0.5 77 50-133 21-98 (684)
119 PF09943 DUF2175: Uncharacteri 49.6 11 0.00024 30.2 1.7 34 52-85 4-37 (101)
120 PF13832 zf-HC5HC2H_2: PHD-zin 49.6 18 0.00039 27.7 2.9 36 44-81 49-87 (110)
121 COG2888 Predicted Zn-ribbon RN 47.3 18 0.00039 26.7 2.4 45 50-101 9-57 (61)
122 PRK00418 DNA gyrase inhibitor; 46.3 23 0.0005 26.1 2.8 43 94-136 6-49 (62)
123 COG4847 Uncharacterized protei 45.5 20 0.00043 28.8 2.5 38 51-88 7-44 (103)
124 KOG3161|consensus 42.9 8.9 0.00019 39.9 0.3 42 51-103 12-55 (861)
125 COG3813 Uncharacterized protei 42.3 23 0.0005 27.3 2.4 48 49-106 4-53 (84)
126 COG5183 SSM4 Protein involved 41.9 38 0.00083 36.4 4.6 49 50-104 12-65 (1175)
127 KOG2068|consensus 41.3 21 0.00046 34.0 2.5 49 51-107 250-300 (327)
128 KOG0826|consensus 39.7 31 0.00066 33.2 3.3 46 50-104 300-345 (357)
129 COG1675 TFA1 Transcription ini 37.9 27 0.00059 30.4 2.5 29 94-124 132-160 (176)
130 KOG1815|consensus 37.7 27 0.00058 33.7 2.7 55 50-106 70-127 (444)
131 PF04710 Pellino: Pellino; In 37.5 11 0.00024 36.9 0.0 69 37-105 312-401 (416)
132 KOG1001|consensus 37.2 13 0.00029 38.2 0.6 45 51-104 455-499 (674)
133 PF07649 C1_3: C1-like domain; 37.2 24 0.00052 21.5 1.5 28 52-79 2-30 (30)
134 PF10571 UPF0547: Uncharacteri 36.4 21 0.00046 21.8 1.1 23 52-74 2-24 (26)
135 PRK10144 formate-dependent nit 36.3 35 0.00075 28.3 2.7 28 94-123 40-67 (126)
136 KOG0801|consensus 36.1 20 0.00043 31.6 1.3 17 93-109 137-153 (205)
137 cd00350 rubredoxin_like Rubred 35.5 19 0.00041 22.7 0.8 9 94-102 17-25 (33)
138 KOG3896|consensus 35.1 27 0.00058 34.0 2.1 41 3-62 12-57 (449)
139 PF15353 HECA: Headcase protei 34.4 8.2 0.00018 31.3 -1.2 23 63-85 26-55 (107)
140 smart00064 FYVE Protein presen 34.3 10 0.00022 26.7 -0.6 43 42-85 3-47 (68)
141 PF04423 Rad50_zn_hook: Rad50 33.8 7 0.00015 26.9 -1.5 39 79-123 9-47 (54)
142 KOG1100|consensus 33.6 18 0.00039 31.9 0.7 40 52-105 160-200 (207)
143 TIGR03147 cyt_nit_nrfF cytochr 33.5 40 0.00086 28.0 2.7 28 94-123 40-67 (126)
144 PF13717 zinc_ribbon_4: zinc-r 33.4 23 0.00049 22.9 1.0 24 52-75 4-36 (36)
145 KOG4367|consensus 33.0 24 0.00052 35.4 1.5 39 50-90 4-42 (699)
146 PF07227 DUF1423: Protein of u 32.4 57 0.0012 32.4 4.0 52 52-103 130-192 (446)
147 KOG0269|consensus 31.4 39 0.00085 35.7 2.8 35 51-86 780-815 (839)
148 cd00730 rubredoxin Rubredoxin; 30.9 31 0.00067 24.1 1.4 12 92-103 32-43 (50)
149 PF12773 DZR: Double zinc ribb 30.7 63 0.0014 21.4 2.9 15 94-108 29-43 (50)
150 PF05502 Dynactin_p62: Dynacti 30.5 32 0.00069 34.0 1.9 8 95-102 87-94 (483)
151 PF13719 zinc_ribbon_5: zinc-r 28.6 28 0.0006 22.5 0.8 25 51-75 3-36 (37)
152 KOG4718|consensus 28.1 30 0.00064 31.5 1.1 45 51-106 182-227 (235)
153 PF00301 Rubredoxin: Rubredoxi 26.7 30 0.00065 23.9 0.7 12 92-103 32-43 (47)
154 KOG0825|consensus 26.2 19 0.00041 38.5 -0.5 46 51-101 216-264 (1134)
155 smart00336 BBOX B-Box-type zin 25.5 54 0.0012 20.4 1.7 25 10-34 12-36 (42)
156 PF12760 Zn_Tnp_IS1595: Transp 25.2 44 0.00095 22.3 1.3 12 92-103 16-27 (46)
157 PF03918 CcmH: Cytochrome C bi 25.0 71 0.0015 26.8 2.8 28 94-123 40-67 (148)
158 cd04718 BAH_plant_2 BAH, or Br 23.3 26 0.00057 29.8 -0.1 26 74-103 2-27 (148)
159 PF03884 DUF329: Domain of unk 23.2 16 0.00035 26.4 -1.2 42 96-137 4-46 (57)
160 cd00021 BBOX B-Box-type zinc f 23.0 56 0.0012 20.0 1.4 24 11-34 10-33 (39)
161 PF13771 zf-HC5HC2H: PHD-like 22.8 76 0.0016 23.2 2.3 31 49-81 35-68 (90)
162 PF01363 FYVE: FYVE zinc finge 22.1 37 0.00081 23.8 0.5 38 42-82 2-43 (69)
163 KOG2462|consensus 21.9 68 0.0015 30.0 2.3 36 70-109 193-230 (279)
164 PF14569 zf-UDP: Zinc-binding 21.6 1.1E+02 0.0024 23.7 3.0 49 50-105 9-62 (80)
165 smart00734 ZnF_Rad18 Rad18-lik 21.4 46 0.001 20.1 0.8 9 96-104 3-11 (26)
No 1
>KOG3970|consensus
Probab=100.00 E-value=2.8e-85 Score=577.32 Aligned_cols=207 Identities=57% Similarity=1.087 Sum_probs=180.0
Q ss_pred CccccCCCCcccccceeeeccccccccccCCCCcceeeeehhhccCCCCCCcCccccccccCCCceeecCCCccCHHHHH
Q psy15061 1 MGLCKCPKRKVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLN 80 (226)
Q Consensus 1 MglCkc~krk~T~~fCf~HrvnVCe~C~v~~H~~CvVqSYlqWL~DsDyd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd 80 (226)
|||||||||||||||||||||||||+|||.||++||||||+|||+||||+++|.+|...|+.||++||.|||+|||+||+
T Consensus 1 MGLCKCPKRkVTNlFCfEHRVNVCEhClV~nHpkCiVQSYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~Cln 80 (299)
T KOG3970|consen 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVANHPKCIVQSYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLN 80 (299)
T ss_pred CCcccCchhhhhhhhhhhhhhhHHHHHHhccCchhhHHHHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhhhhhhhhhcCCCCCCCCCCCCC-----CCCCCCcccc
Q psy15061 81 HYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSSVNWARVGLGLPLLNDEVEHKP-----SMTSAAKSFV 155 (226)
Q Consensus 81 ~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq~~War~glgl~l~~e~~~~~~-----~~~~~~~~~~ 155 (226)
+|..++|+||||+||+||.|+.+|||+.|++|||+++|||+|+|+||||+|||||+|+|+++|.+ +..++|+.++
T Consensus 81 eraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLre~L~qvNWaRagLGLpll~E~~sp~p~p~~p~~~s~~~~~n 160 (299)
T KOG3970|consen 81 ERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALREQLKQVNWARAGLGLPLLPELNSPVPSPAPPQLKSAPVMHN 160 (299)
T ss_pred HHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHHHHHHhhhHHhhccCCccchhhcCCCCCCCChhhccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999988654 3456666654
Q ss_pred ccC--CCCCCC---------------C-e--eeec-----CCccccccceeccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy15061 156 HTY--NKSVEP---------------A-D--VYTS-----GMSVQNTRRVYQSVDIEEVPPSHHHHHHPVAPVSRDHDEN 210 (226)
Q Consensus 156 ~~~--~~~~~~---------------p-~--~~~~-----~~~~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~ 210 (226)
.+. +..+++ | | +.|+ +.+.+.+|++|+.|+. ..|||
T Consensus 161 ~~~vh~~~S~~~a~~~~~~~~~~~~sp~h~V~~m~~~Np~p~s~a~tR~~l~~R~g-------------------D~ddn 221 (299)
T KOG3970|consen 161 EVPVHNNRSSTPATHLEMEDTASYSSPNHDVTFMRKKNPGPESSADTRPLLQLRDG-------------------DNDDN 221 (299)
T ss_pred CCCccccCCCCcccccccCCCCCCCCCCCceEeeccCCCCccccCCcCccccccCC-------------------Ccccc
Confidence 332 111111 2 1 1222 3333445777766532 47999
Q ss_pred cccCCCHHHHHHHhhC
Q psy15061 211 KYKRRSIVEWISRWWM 226 (226)
Q Consensus 211 kykrr~~~~w~~~~~~ 226 (226)
||||||+++||+||||
T Consensus 222 KY~RRp~~~w~~rl~R 237 (299)
T KOG3970|consen 222 KYKRRPTMDWMRRLWR 237 (299)
T ss_pred hhhcCChHHHHHHHHH
Confidence 9999999999999997
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.27 E-value=1.4e-12 Score=86.67 Aligned_cols=42 Identities=29% Similarity=0.930 Sum_probs=35.9
Q ss_pred cCccccccccCCC-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAEN-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 52 ~C~IC~~~L~~gd-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
+|+||+++|..++ +++|+|||+||.+||.+|+++. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--------CcCCccC
Confidence 6999999998765 6779999999999999999983 3799995
No 3
>KOG4628|consensus
Probab=99.20 E-value=7.3e-12 Score=116.86 Aligned_cols=52 Identities=29% Similarity=0.706 Sum_probs=45.5
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
..|+||++++.+||.+| |+|.|.||..|||.||.+. +..||+|+..|.++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-------r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-------RTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-------CccCCCCCCcCCCCCC
Confidence 38999999999999888 8999999999999999985 2359999998887543
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.87 E-value=1.7e-09 Score=79.99 Aligned_cols=54 Identities=28% Similarity=0.767 Sum_probs=37.7
Q ss_pred eehhhccCCCCCCcCccccccccCC--------C--cee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 39 SYLQWLEDSDYNPTCELCRKDLAAE--------N--CIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 39 SYlqWL~DsDyd~~C~IC~~~L~~g--------d--~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
....|-.|.. +.+|+||+++|.+. + .+. ..|||.||..||.+||+... +||+||
T Consensus 9 ~v~~~~~~~~-~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--------~CP~CR 73 (73)
T PF12678_consen 9 AVALWSWDIA-DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--------TCPLCR 73 (73)
T ss_dssp EEEEEEESSC-CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--------B-TTSS
T ss_pred EEEEEeecCc-CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--------cCCCCC
Confidence 3445544433 44699999999432 1 333 58999999999999998643 699996
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.9e-09 Score=102.10 Aligned_cols=49 Identities=27% Similarity=0.740 Sum_probs=41.2
Q ss_pred CCCcCccccccccCCC-----------ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN-----------CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd-----------~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
-|..|.||+++|...+ +-||+|||+||.+||..|++++. +||+|+.|+.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--------TCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--------TCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--------CCCcccCccc
Confidence 4789999999964422 68999999999999999999853 4999999944
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.6e-09 Score=98.85 Aligned_cols=53 Identities=30% Similarity=0.814 Sum_probs=46.1
Q ss_pred CCCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
++.-.|+||++.+-.+|-++ |+|.|+||..|+++|+.... .+||+|+++|-|+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-------~~CPvCrt~iPPp 374 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-------NKCPVCRTAIPPP 374 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-------ccCCccCCCCCCC
Confidence 56789999999999888655 89999999999999998654 3699999999775
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.78 E-value=8.4e-09 Score=65.51 Aligned_cols=44 Identities=27% Similarity=0.833 Sum_probs=35.5
Q ss_pred cCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
.|+||++.+ .+.+.+ +|||.||..|++.|++. ...+||.|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~-------~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS-------GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHh-------CcCCCCCCCCcC
Confidence 489999998 345555 59999999999999986 235699998764
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.69 E-value=1.5e-08 Score=90.64 Aligned_cols=48 Identities=23% Similarity=0.727 Sum_probs=38.9
Q ss_pred CCcCccccccccCCCc------eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENC------IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~------vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|+||++.+.+.++ +.+.|+|+||..||.+|++..+ +||+||.++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~--------tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN--------TCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC--------CCCCCCCEee
Confidence 5899999999876542 3347999999999999998632 5999998764
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.59 E-value=4.5e-08 Score=75.52 Aligned_cols=50 Identities=22% Similarity=0.625 Sum_probs=36.4
Q ss_pred CCcCccccccccC--------CC---ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAA--------EN---CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~--------gd---~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
|..|+||...|+. || .|.-.|+|.||..||.+|+++... .-+||.||++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-----~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-----KGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-----CCCCCCcCCee
Confidence 5667777766642 33 344489999999999999997532 23799999864
No 10
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.51 E-value=1.2e-07 Score=58.14 Aligned_cols=39 Identities=26% Similarity=0.841 Sum_probs=31.8
Q ss_pred CccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|+||++. ..+.+.++|+|+||..|++.|++. ...+||.|
T Consensus 1 C~iC~~~--~~~~~~~~C~H~~c~~C~~~~~~~-------~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCGHTFCRSCIRKWLKS-------GNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCCChHHHHHHHHHHHh-------CcCCCCCC
Confidence 7899888 345778999999999999999983 23469987
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.46 E-value=2e-07 Score=81.26 Aligned_cols=56 Identities=20% Similarity=0.597 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPST--------TAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~n--------Tapag~~CP~C~~~I~P 106 (226)
-+..|+||++.+. +.|.+.|||+|.+.||..|+...... ......+||+|+.+|..
T Consensus 17 ~~~~CpICld~~~--dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR--DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC--CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4578999999875 45778999999999999998643210 01124689999999965
No 12
>KOG0802|consensus
Probab=98.43 E-value=9.1e-08 Score=93.20 Aligned_cols=52 Identities=31% Similarity=0.703 Sum_probs=44.4
Q ss_pred CCCcCccccccccCCC---ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN---CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd---~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
++..|+||.+.|..++ +.||+|+|+||.+||.+|+++. + .||+|+..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~--q------tCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ--Q------TCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh--C------cCCcchhhhhccc
Confidence 4789999999998874 5789999999999999999984 3 4999999666543
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.37 E-value=2e-07 Score=60.49 Aligned_cols=41 Identities=29% Similarity=0.782 Sum_probs=34.1
Q ss_pred CccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|+||++.+.+. .+.++|||.|...||.+|++.. +.++||.|
T Consensus 1 C~iC~~~~~~~-~~~~~C~H~fC~~C~~~~~~~~------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP-VILLPCGHSFCRDCLRKWLENS------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE-EEETTTSEEEEHHHHHHHHHHT------SSSBTTTT
T ss_pred CCcCCccccCC-CEEecCCCcchHHHHHHHHHhc------CCccCCcC
Confidence 78999998653 2468999999999999999962 45789998
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.35 E-value=2.2e-07 Score=60.45 Aligned_cols=39 Identities=28% Similarity=0.785 Sum_probs=30.9
Q ss_pred CccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|+||++.+.+ .++.++|||+|..+|+.+|++.. .+||.|
T Consensus 1 C~iC~~~~~~-~~~~~~CGH~fC~~C~~~~~~~~--------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCGHSFCKECIEKYLEKN--------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTSEEEEHHHHHHHHHCT--------SB-TTT
T ss_pred CCCCCCcccC-cCEECCCCCchhHHHHHHHHHCc--------CCCcCC
Confidence 7899998866 23568999999999999999973 369998
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.32 E-value=3.7e-07 Score=61.17 Aligned_cols=42 Identities=29% Similarity=0.819 Sum_probs=31.7
Q ss_pred CccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|+||++.|.+ .|.|.|||+|=.+||.+|.+.... .++.||.|
T Consensus 1 CpiC~~~~~~--Pv~l~CGH~FC~~Cl~~~~~~~~~----~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD--PVSLPCGHSFCRSCLERLWKEPSG----SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS--EEE-SSSSEEEHHHHHHHHCCSSS----ST---SSS
T ss_pred CCccchhhCC--ccccCCcCHHHHHHHHHHHHccCC----cCCCCcCC
Confidence 8999999866 899999999999999999987443 34899998
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.20 E-value=9.3e-07 Score=60.17 Aligned_cols=46 Identities=22% Similarity=0.652 Sum_probs=36.7
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|.||++... +++-++|||+ |-..|+.+|++. ..+||+|+++|-
T Consensus 2 ~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR--DVVLLPCGHLCFCEECAERLLKR--------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS--SEEEETTCEEEEEHHHHHHHHHT--------TSBBTTTTBB-S
T ss_pred cCCCccCCccCC--ceEEeCCCChHHHHHHhHHhccc--------CCCCCcCChhhc
Confidence 357999999854 4777899999 999999999984 346999999873
No 17
>KOG0317|consensus
Probab=98.17 E-value=9.2e-07 Score=81.16 Aligned_cols=49 Identities=24% Similarity=0.760 Sum_probs=41.4
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
+..|.+|++...+ ....+|||+|-|.||.+|....+. ||+||...-|.+
T Consensus 239 ~~kC~LCLe~~~~--pSaTpCGHiFCWsCI~~w~~ek~e--------CPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSN--PSATPCGHIFCWSCILEWCSEKAE--------CPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCC--CCcCcCcchHHHHHHHHHHccccC--------CCcccccCCCcc
Confidence 4889999998654 567899999999999999987543 999999887754
No 18
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.17 E-value=1.7e-06 Score=66.62 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=39.6
Q ss_pred CCCcCccccccccCCC--ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN--CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd--~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
++..|+-|+-.+..|+ ++.. .|.|.||..||..||.... .||+++++.
T Consensus 30 im~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~--------~CPld~q~w 80 (88)
T COG5194 30 IMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG--------VCPLDRQTW 80 (88)
T ss_pred ccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC--------CCCCCCcee
Confidence 6788999998887776 3443 8999999999999999743 599998864
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.11 E-value=7.1e-06 Score=57.05 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=44.3
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
.|+||++.|.+ .|.++|||+|-.+||.+|++.. .+||.|+.++-. .++.. ...||+++.
T Consensus 3 ~Cpi~~~~~~~--Pv~~~~G~v~~~~~i~~~~~~~--------~~cP~~~~~~~~-~~l~~--~~~l~~~i~ 61 (63)
T smart00504 3 LCPISLEVMKD--PVILPSGQTYERRAIEKWLLSH--------GTDPVTGQPLTH-EDLIP--NLALKSAIQ 61 (63)
T ss_pred CCcCCCCcCCC--CEECCCCCEEeHHHHHHHHHHC--------CCCCCCcCCCCh-hhcee--CHHHHHHHH
Confidence 59999999875 6889999999999999999872 369999998743 22211 245665554
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.03 E-value=5e-06 Score=55.53 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=34.2
Q ss_pred cCccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
.|.+|.+.+.+... +.|.|||+|..+|+.... . ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~-------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G-------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C-------CCCCCcCCCC
Confidence 48999999944444 446999999999999998 1 2467999985
No 21
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.03 E-value=5.1e-06 Score=57.46 Aligned_cols=44 Identities=20% Similarity=0.583 Sum_probs=35.4
Q ss_pred cCccccccccCCCceeecCC-----CccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCY-----HVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~-----HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
.|.||++...+++...++|. |.||.+||..|+...... +||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~------~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNK------TCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCC------cCCCCC
Confidence 48999985556667778885 999999999999875443 699995
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.00 E-value=3.9e-06 Score=56.95 Aligned_cols=41 Identities=29% Similarity=0.827 Sum_probs=24.3
Q ss_pred CccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCP 98 (226)
Q Consensus 53 C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP 98 (226)
|+||.+ +.+.+ .+.|+|||+|=.+||++++++... ..++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~----~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDR----NRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-----S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCC----CeeeCc
Confidence 899999 75543 688999999999999999997432 357887
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=1.4e-05 Score=76.31 Aligned_cols=63 Identities=16% Similarity=0.382 Sum_probs=46.5
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKL 122 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~l 122 (226)
.-.|+||++.|.+ .|.++|||.|...||..|+... ..||+|+.++....-....+.+.|-+.+
T Consensus 26 ~l~C~IC~d~~~~--PvitpCgH~FCs~CI~~~l~~~--------~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 26 SLRCHICKDFFDV--PVLTSCSHTFCSLCIRRCLSNQ--------PKCPLCRAEDQESKLRSNWLVSEIVESF 88 (397)
T ss_pred ccCCCcCchhhhC--ccCCCCCCchhHHHHHHHHhCC--------CCCCCCCCccccccCccchHHHHHHHHH
Confidence 4799999998854 5678999999999999999863 2699999998764222334444444433
No 24
>KOG0320|consensus
Probab=97.93 E-value=5.3e-06 Score=71.94 Aligned_cols=47 Identities=21% Similarity=0.626 Sum_probs=41.4
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
-.|+||++.+.+...|--.|||||-.+||..-++. +.+||+|++.|-
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--------~~~CP~C~kkIt 178 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--------TNKCPTCRKKIT 178 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHh--------CCCCCCcccccc
Confidence 57999999998877777899999999999999986 457999998764
No 25
>KOG1734|consensus
Probab=97.89 E-value=2.6e-06 Score=78.22 Aligned_cols=67 Identities=25% Similarity=0.539 Sum_probs=50.8
Q ss_pred CCcCccccccccCCC--------ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC---CC-------CC
Q psy15061 50 NPTCELCRKDLAAEN--------CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP---NN-------LV 111 (226)
Q Consensus 50 d~~C~IC~~~L~~gd--------~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~---~n-------~~ 111 (226)
|+.|+||.+.+.... +-+|.|+|+||.-||.-|.--.+.+| ||-|++.|--. +| .-
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqt------CPYCKekVdl~rmfsnpWekph~~y 297 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQT------CPYCKEKVDLKRMFSNPWEKPHVWY 297 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCC------CchHHHHhhHhhhccCccccchhHH
Confidence 689999999986532 56799999999999999976655554 99999876432 11 25
Q ss_pred ChHHHHHHHHh
Q psy15061 112 SPVADVLREKL 122 (226)
Q Consensus 112 Spva~~Lre~l 122 (226)
.++.|.||--+
T Consensus 298 g~LldwlRylV 308 (328)
T KOG1734|consen 298 GQLLDWLRYLV 308 (328)
T ss_pred HHHHHHHHHHH
Confidence 66777777654
No 26
>KOG0823|consensus
Probab=97.89 E-value=8.8e-06 Score=72.72 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=40.5
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|-||++. ..|.|.-.|||+|-|.||-+||...+. ...||+|+..|--
T Consensus 48 FdCNICLd~--akdPVvTlCGHLFCWpClyqWl~~~~~-----~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 48 FDCNICLDL--AKDPVVTLCGHLFCWPCLYQWLQTRPN-----SKECPVCKAEVSI 96 (230)
T ss_pred eeeeeeccc--cCCCEEeecccceehHHHHHHHhhcCC-----CeeCCcccccccc
Confidence 469999987 445888899999999999999997653 4578999988753
No 27
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.88 E-value=1.8e-06 Score=63.51 Aligned_cols=54 Identities=20% Similarity=0.468 Sum_probs=25.8
Q ss_pred CcCcccccccc-CCCcee-----ecCCCccCHHHHHHHHHhCCCCC---CCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLA-AENCIR-----LTCYHVYHWSCLNHYARQLPSTT---APAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~-~gd~vR-----L~C~HvFH~~CLd~wl~~~p~nT---apag~~CP~C~~~I 104 (226)
..|.||...+. .++.-+ -.|+.+||..||.+||+..+... .|-.-+||.|+++|
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 47999999876 443222 26999999999999999754321 12223699999887
No 28
>PHA02926 zinc finger-like protein; Provisional
Probab=97.81 E-value=1.3e-05 Score=71.72 Aligned_cols=54 Identities=24% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCcCccccccccCC----C---ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE----N---CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~g----d---~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|+||++...+. + -+-.+|+|+|...||..|.+....+ .....||.||..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~--~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRET--GASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcccc--CcCCcCCCCcceee
Confidence 57899999987442 2 2334899999999999999864321 12356999998754
No 29
>KOG1493|consensus
Probab=97.80 E-value=4.4e-06 Score=63.92 Aligned_cols=48 Identities=23% Similarity=0.659 Sum_probs=35.9
Q ss_pred CcCccccccccC--------CC--ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAA--------EN--CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 51 ~~C~IC~~~L~~--------gd--~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
.+|.||.-+|+. || ++.+ .|.|.||..||.+|+.... +.-.||.||+.
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t-----sq~~CPmcRq~ 79 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT-----SQGQCPMCRQT 79 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc-----ccccCCcchhe
Confidence 377777777742 44 4444 7999999999999998643 23579999975
No 30
>KOG0828|consensus
Probab=97.58 E-value=2.9e-05 Score=76.16 Aligned_cols=50 Identities=28% Similarity=0.750 Sum_probs=38.5
Q ss_pred CCcCccccccccC---C-C------cee----e-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAA---E-N------CIR----L-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~---g-d------~vR----L-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
...|+||+.+++- | + -+| | +|.|+||..||.+|+...+. .||.|+.++-|
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl-------~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKL-------ICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcc-------cCCccCCCCCC
Confidence 3889999999852 2 2 222 2 89999999999999996443 59999998754
No 31
>KOG1940|consensus
Probab=97.54 E-value=3.4e-05 Score=70.66 Aligned_cols=52 Identities=31% Similarity=0.697 Sum_probs=44.3
Q ss_pred cceeeeehhhccCCCCCCcCccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 34 KCIVQSYLQWLEDSDYNPTCELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 34 ~CvVqSYlqWL~DsDyd~~C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
.|+..+ ...+|+||.+.|..+. +..|.|||..|..|+.++... ||.||+|.+
T Consensus 151 ~c~e~~---------~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~y~CP~C~~ 204 (276)
T KOG1940|consen 151 KCVERS---------SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------GYTCPICSK 204 (276)
T ss_pred chhhhc---------ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------CCCCCcccc
Confidence 677666 6678999999998875 455899999999999999875 599999988
No 32
>KOG0827|consensus
Probab=97.40 E-value=7.4e-05 Score=71.55 Aligned_cols=46 Identities=30% Similarity=0.776 Sum_probs=35.1
Q ss_pred CCcCccccccccCCC-ce-ee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN-CI-RL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd-~v-RL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
...|.|| .++...+ -+ -. .|||+||..||-+|++..|.| -.||+|+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-----R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-----RGCPICQ 52 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCcc-----CCCCcee
Confidence 4679999 5555532 22 24 599999999999999986654 4699998
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=9.3e-05 Score=67.52 Aligned_cols=51 Identities=24% Similarity=0.580 Sum_probs=41.4
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHH-HHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNH-YARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~-wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
|-.|+||++.... .++.+|||+|-|.||.. |-.+... .||+|+.-+.|..-
T Consensus 215 d~kC~lC~e~~~~--ps~t~CgHlFC~~Cl~~~~t~~k~~-------~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEV--PSCTPCGHLFCLSCLLISWTKKKYE-------FCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCC--cccccccchhhHHHHHHHHHhhccc-------cCchhhhhccchhh
Confidence 3469999998644 68899999999999999 8776443 39999999888553
No 34
>KOG0804|consensus
Probab=97.32 E-value=7.7e-05 Score=72.34 Aligned_cols=47 Identities=30% Similarity=0.782 Sum_probs=38.3
Q ss_pred CCcCccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-|+|+||++.|+..- ++-..|.|.||-+||..|-.. +||+||-..-|
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~----------scpvcR~~q~p 223 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS----------SCPVCRYCQSP 223 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC----------cChhhhhhcCc
Confidence 399999999997753 344689999999999999654 59999976553
No 35
>KOG2164|consensus
Probab=97.27 E-value=0.00018 Score=70.50 Aligned_cols=52 Identities=19% Similarity=0.531 Sum_probs=40.6
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||+++-.. .+|..|||+|-+.||..|+....- -.-..||+|+..|.+
T Consensus 186 ~~~CPICL~~~~~--p~~t~CGHiFC~~CiLqy~~~s~~---~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV--PVRTNCGHIFCGPCILQYWNYSAI---KGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc--ccccccCceeeHHHHHHHHhhhcc---cCCccCCchhhhccc
Confidence 5689999998643 567789999999999999886411 123459999998877
No 36
>KOG1952|consensus
Probab=97.23 E-value=0.00013 Score=75.17 Aligned_cols=51 Identities=29% Similarity=0.899 Sum_probs=43.1
Q ss_pred CcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-.|.||.+.+...+.|-- .||||||..||.+|+++ ...|-+++.+||.|..
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs-~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS-SEKTGQDGWRCPACQS 244 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH-hhhccCccccCCcccc
Confidence 579999999988776653 79999999999999998 4445678999999984
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.22 E-value=0.00027 Score=51.88 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=36.0
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.|+|+.+-|.+ .|++++||+|=.++|..|++.. +..||.|+.++-..
T Consensus 6 ~CpIt~~lM~d--PVi~~~G~tyer~~I~~~l~~~-------~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 6 LCPITGELMRD--PVILPSGHTYERSAIERWLEQN-------GGTDPFTRQPLSES 52 (73)
T ss_dssp B-TTTSSB-SS--EEEETTSEEEEHHHHHHHHCTT-------SSB-TTT-SB-SGG
T ss_pred CCcCcCcHhhC--ceeCCcCCEEcHHHHHHHHHcC-------CCCCCCCCCcCCcc
Confidence 58999998865 8999999999999999999972 45799999887753
No 38
>KOG2930|consensus
Probab=97.15 E-value=0.00013 Score=58.70 Aligned_cols=31 Identities=19% Similarity=0.678 Sum_probs=25.8
Q ss_pred ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 65 CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 65 ~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
+|.- .|.|.||..||..||+... .||+|.++
T Consensus 75 ~VaWG~CNHaFH~hCisrWlktr~--------vCPLdn~e 106 (114)
T KOG2930|consen 75 TVAWGVCNHAFHFHCISRWLKTRN--------VCPLDNKE 106 (114)
T ss_pred EEEeeecchHHHHHHHHHHHhhcC--------cCCCcCcc
Confidence 4554 7999999999999999743 69999875
No 39
>KOG2177|consensus
Probab=97.15 E-value=0.00039 Score=57.30 Aligned_cols=65 Identities=23% Similarity=0.452 Sum_probs=48.4
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhhhh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSSVN 126 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq~~ 126 (226)
.-.|+||++.|..- +.|+|||.|=..||..+.. ..+.||.|+. ... ..........|.+.+.+..
T Consensus 13 ~~~C~iC~~~~~~p--~~l~C~H~~c~~C~~~~~~--------~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 13 ELTCPICLEYFREP--VLLPCGHNFCRACLTRSWE--------GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred cccChhhHHHhhcC--ccccccchHhHHHHHHhcC--------CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 57899999999775 6689999999999999988 2478999995 433 2224445556666665554
No 40
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.10 E-value=0.0002 Score=54.05 Aligned_cols=32 Identities=31% Similarity=0.757 Sum_probs=28.8
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHH
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLN 80 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd 80 (226)
.+..|++|.+.|.++..++.+|||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 46889999999988878889999999999975
No 41
>KOG0825|consensus
Probab=97.05 E-value=0.00011 Score=75.41 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=66.9
Q ss_pred cccccc---cCCCCcceeeeehhhccCCCCCCcCccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCC
Q psy15061 23 VCEYCM---VTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCP 98 (226)
Q Consensus 23 VCe~C~---v~~H~~CvVqSYlqWL~DsDyd~~C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP 98 (226)
+|+.|. ++.-.+|+++. +....|++|+..+.++.+ .+..|+|.||.+||+.|-+.- + +||
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~--------~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--q------TCP 164 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQT--------HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--Q------TCP 164 (1134)
T ss_pred hhheecCCcccccCcCchhh--------hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--c------cCc
Confidence 444443 44577888776 234679999999988875 468999999999999998763 3 499
Q ss_pred CCCCCCC---CCCCCCC-hHHHHHHHHhhhhhhhhh
Q psy15061 99 QCKTGLF---PPNNLVS-PVADVLREKLSSVNWARV 130 (226)
Q Consensus 99 ~C~~~I~---P~~n~~S-pva~~Lre~laq~~War~ 130 (226)
+|+..+. +.....+ ++...|++-+++.+.+..
T Consensus 165 iDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 165 VDRGEFGEVKVLESTGIEANVRCLPSEESENILEKG 200 (1134)
T ss_pred hhhhhhheeeeeccccccceeEecchhhhhhhhhhc
Confidence 9998543 3333344 777788888888877763
No 42
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.0014 Score=61.15 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=37.1
Q ss_pred CCcCccccccccCCCcee-e--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-L--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+..|++|+...-.....+ | .|||.|-.+|++..+...+ ..||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~-------~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS-------GSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC-------CCCCCCCCccchh
Confidence 357999999532222222 2 6999999999999886533 3699999988764
No 43
>KOG1941|consensus
Probab=96.68 E-value=0.00053 Score=66.06 Aligned_cols=46 Identities=28% Similarity=0.770 Sum_probs=37.6
Q ss_pred CCcCccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
.-.|..|.+.+-..+ .-.|+|.|+||..|+-++|.+.... .||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~r------sCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTR------SCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCC------CCccHH
Confidence 578999999886544 3458999999999999999875443 599998
No 44
>KOG1645|consensus
Probab=96.67 E-value=0.0017 Score=62.77 Aligned_cols=49 Identities=22% Similarity=0.659 Sum_probs=39.0
Q ss_pred CCCcCccccccccC-CC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA-EN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 49 yd~~C~IC~~~L~~-gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
-..+|+||++.+.. |+ .|-|.|||.|-..||..||-+.- -.+||.|+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~------~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKT------KMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhh------hhhCcccCCh
Confidence 45799999999864 66 46689999999999999995321 3579999764
No 45
>KOG0287|consensus
Probab=96.54 E-value=0.0019 Score=61.42 Aligned_cols=73 Identities=23% Similarity=0.443 Sum_probs=50.9
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhhhhhhhh
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSSVNWARV 130 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq~~War~ 130 (226)
-.|.||.+.|.. .+..+|+|.|-.-||..+|..+| .||+|..++--+.--... -|-|.+...+.+|+
T Consensus 24 LRC~IC~eyf~i--p~itpCsHtfCSlCIR~~L~~~p--------~CP~C~~~~~Es~Lr~n~---il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 24 LRCGICFEYFNI--PMITPCSHTFCSLCIRKFLSYKP--------QCPTCCVTVTESDLRNNR---ILDEIVKSLNFARN 90 (442)
T ss_pred HHHhHHHHHhcC--ceeccccchHHHHHHHHHhccCC--------CCCceecccchhhhhhhh---HHHHHHHHHHHHHH
Confidence 469999999965 45668999999999999999877 499997665432211222 24455666677777
Q ss_pred hcCCCC
Q psy15061 131 GLGLPL 136 (226)
Q Consensus 131 glgl~l 136 (226)
-|---|
T Consensus 91 ~Ll~fl 96 (442)
T KOG0287|consen 91 HLLQFL 96 (442)
T ss_pred HHHHHH
Confidence 554333
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.39 E-value=0.00097 Score=69.94 Aligned_cols=48 Identities=25% Similarity=0.665 Sum_probs=38.4
Q ss_pred CcCccccccccCCC----cee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN----CIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~~gd----~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
..|+||..-|..-| .-| -.|-|-||.+||-+|+++...+ +||+||..|
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s------~CPlCRsei 1522 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARS------NCPLCRSEI 1522 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCC------CCCcccccc
Confidence 88999999886322 233 3699999999999999986555 599999776
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.36 E-value=0.0011 Score=48.99 Aligned_cols=56 Identities=25% Similarity=0.574 Sum_probs=27.2
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVL 118 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~L 118 (226)
-.|++|.+-|.+ +|-| .|.|+|=+.|+..-+ |..||+|..|.|-..-...+..+.|
T Consensus 8 LrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~----------~~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGGCEHIFCSSCIRDCI----------GSECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGT----------TTB-SSS--B-S-SS----HHHHHH
T ss_pred cCCcHHHHHhcC--CceeccCccHHHHHHhHHhc----------CCCCCCcCChHHHHHHHhhhhhhcc
Confidence 359999998865 5665 899999999997643 3469999999997665566655443
No 48
>KOG0978|consensus
Probab=95.98 E-value=0.0028 Score=64.48 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=39.5
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|++|.... .|+|...|||+|--.|+...+..-. -+||.|+.++.|
T Consensus 644 LkCs~Cn~R~--Kd~vI~kC~H~FC~~Cvq~r~etRq-------RKCP~Cn~aFga 690 (698)
T KOG0978|consen 644 LKCSVCNTRW--KDAVITKCGHVFCEECVQTRYETRQ-------RKCPKCNAAFGA 690 (698)
T ss_pred eeCCCccCch--hhHHHHhcchHHHHHHHHHHHHHhc-------CCCCCCCCCCCc
Confidence 6899999554 4588889999999999999998743 479999998875
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.83 E-value=0.0048 Score=44.03 Aligned_cols=44 Identities=14% Similarity=0.422 Sum_probs=29.5
Q ss_pred CCCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQ 99 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~ 99 (226)
..+-.|+|.+.+|.+ +|+ ..|+|+|=.+.|.+|++.. ...+||.
T Consensus 9 ~~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~------~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRN------GSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTT------S-EE-SC
T ss_pred EeccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhc------CCCCCCC
Confidence 356889999999865 777 6999999999999999432 3568998
No 50
>KOG4445|consensus
Probab=95.78 E-value=0.003 Score=59.17 Aligned_cols=83 Identities=23% Similarity=0.482 Sum_probs=57.4
Q ss_pred ehhhccCCCC-CCcCccccccccCCC-ceeecCCCccCHHHHHHHHHhCC-----------C---CCC-CCCCCCCCCCC
Q psy15061 40 YLQWLEDSDY-NPTCELCRKDLAAEN-CIRLTCYHVYHWSCLNHYARQLP-----------S---TTA-PAGYKCPQCKT 102 (226)
Q Consensus 40 YlqWL~DsDy-d~~C~IC~~~L~~gd-~vRL~C~HvFH~~CLd~wl~~~p-----------~---nTa-pag~~CP~C~~ 102 (226)
-.++|.++.. +..|+||+--|.+|+ .++-.|+|.||-.||..||...- . +++ +-.-.||+|+.
T Consensus 104 ~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre 183 (368)
T KOG4445|consen 104 CSEFLTENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRE 183 (368)
T ss_pred HHHHcccCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhh
Confidence 3466777654 588999999999998 67889999999999999875411 0 111 11235999998
Q ss_pred CCCCC-------------CCCCChHHHHHHHHh
Q psy15061 103 GLFPP-------------NNLVSPVADVLREKL 122 (226)
Q Consensus 103 ~I~P~-------------~n~~Spva~~Lre~l 122 (226)
.|--. .+..-++++.||+.-
T Consensus 184 ~i~~e~~slk~a~~Pt~~l~~~~~~~eslrq~~ 216 (368)
T KOG4445|consen 184 RIKIEENSLKIAEFPTYPMELYQPSAESLRQQE 216 (368)
T ss_pred hccccccceeccCCCccccccCcccHHHHHHHH
Confidence 87432 123455777777543
No 51
>KOG3268|consensus
Probab=95.74 E-value=0.0064 Score=53.60 Aligned_cols=65 Identities=23% Similarity=0.494 Sum_probs=49.2
Q ss_pred ehhhccCCCCCCcCccccccccCCC-----ceeecCCCccCHHHHHHHHHhCCCCCCCCC-----CCCCCCCCCCCC
Q psy15061 40 YLQWLEDSDYNPTCELCRKDLAAEN-----CIRLTCYHVYHWSCLNHYARQLPSTTAPAG-----YKCPQCKTGLFP 106 (226)
Q Consensus 40 YlqWL~DsDyd~~C~IC~~~L~~gd-----~vRL~C~HvFH~~CLd~wl~~~p~nTapag-----~~CP~C~~~I~P 106 (226)
|.++|..+|+-..|.||...--+|. .--..||--||.-||-.||+..- |+... -.||.|+.||--
T Consensus 155 a~a~Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgil--TsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 155 AAAFLEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGIL--TSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred HHHhcCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHh--hccceeeeeeccCCCCCCccee
Confidence 5677777778889999987766664 23368999999999999999752 33333 359999999853
No 52
>KOG1428|consensus
Probab=95.70 E-value=0.0061 Score=66.61 Aligned_cols=59 Identities=27% Similarity=0.595 Sum_probs=42.5
Q ss_pred CCCCCcCccccccc-cCCCceeecCCCccCHHHHHHHHHhC---CCCCCCCCCCCCCCCCCCCC
Q psy15061 47 SDYNPTCELCRKDL-AAENCIRLTCYHVYHWSCLNHYARQL---PSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 47 sDyd~~C~IC~~~L-~~gd~vRL~C~HvFH~~CLd~wl~~~---p~nTapag~~CP~C~~~I~P 106 (226)
+|.|..|.||..+- ...-.|+|.|+|+||..|-..-|++- |.-| -.-.+||+|+.+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRIt-F~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRIT-FGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeE-Eeeeecccccchhhh
Confidence 35778999998764 33347999999999999998888752 1111 112579999888753
No 53
>KOG4265|consensus
Probab=95.61 E-value=0.0092 Score=56.51 Aligned_cols=50 Identities=20% Similarity=0.557 Sum_probs=38.7
Q ss_pred CCCCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
|-...|+||+.+. .|++.|+|-|+ +-..|.+...-+ .| .||+||.+|-..
T Consensus 288 ~~gkeCVIClse~--rdt~vLPCRHLCLCs~Ca~~Lr~q--~n------~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSES--RDTVVLPCRHLCLCSGCAKSLRYQ--TN------NCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCC--cceEEecchhhehhHhHHHHHHHh--hc------CCCccccchHhh
Confidence 4457899999984 45899999997 678898887522 22 599999998653
No 54
>KOG0801|consensus
Probab=95.10 E-value=0.0062 Score=52.91 Aligned_cols=61 Identities=30% Similarity=0.654 Sum_probs=42.5
Q ss_pred eeeeccccccccc---cCCCC-----cceeeeehhhccCC--CCCCcCccccccccCCCce-eecCCCccCH
Q psy15061 16 CYEHRVNVCEYCM---VTNHP-----KCIVQSYLQWLEDS--DYNPTCELCRKDLAAENCI-RLTCYHVYHW 76 (226)
Q Consensus 16 Cf~HrvnVCe~C~---v~~H~-----~CvVqSYlqWL~Ds--Dyd~~C~IC~~~L~~gd~v-RL~C~HvFH~ 76 (226)
=..|.-..|..|- .+|-- .|..+.-+.|=.|- |....|+||+|+|..||+| ||+|.-+||+
T Consensus 133 i~~~~g~KCPvC~K~V~sDd~e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 133 IMDHSGMKCPVCHKVVPSDDAEIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred eeccCCccCCccccccCCCcceEEEEEEecccccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3345556677772 22222 46666666665553 4568999999999999965 7999999996
No 55
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.82 E-value=0.017 Score=54.25 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=36.3
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
--|-||.+.|.. .+.-+|||.|-.-||..+|..+|. ||+|+.+.
T Consensus 26 lrC~IC~~~i~i--p~~TtCgHtFCslCIR~hL~~qp~--------CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRISI--PCETTCGHTFCSLCIRRHLGTQPF--------CPVCREDP 69 (391)
T ss_pred HHhhhhhheeec--ceecccccchhHHHHHHHhcCCCC--------CccccccH
Confidence 679999999843 233489999999999999998875 99998653
No 56
>KOG0824|consensus
Probab=94.51 E-value=0.023 Score=53.14 Aligned_cols=48 Identities=17% Similarity=0.506 Sum_probs=39.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
....|+||+....- .|+|.|+|.|--.||.--...... .|++|+.+|-
T Consensus 6 ~~~eC~IC~nt~n~--Pv~l~C~HkFCyiCiKGsy~ndk~-------~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNC--PVNLYCFHKFCYICIKGSYKNDKK-------TCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCc--CccccccchhhhhhhcchhhcCCC-------CCceecCCCC
Confidence 56889999887533 589999999999999987776443 3999999885
No 57
>KOG2034|consensus
Probab=94.12 E-value=0.023 Score=59.21 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=31.6
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQL 86 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~ 86 (226)
+..|.+|..+|...--+..+|||.||+.||......+
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 6789999999976655677999999999999987764
No 58
>KOG1002|consensus
Probab=94.05 E-value=0.027 Score=56.50 Aligned_cols=73 Identities=25% Similarity=0.548 Sum_probs=54.3
Q ss_pred cCCCCcceeeeehhhccCCC-CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 29 VTNHPKCIVQSYLQWLEDSD-YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 29 v~~H~~CvVqSYlqWL~DsD-yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..+||-=|+.|-..-|.|.+ -...|.+|.++-+ |.+.-.|.|+|-..||.+|+..+-.+ .+.+||+|..++--
T Consensus 514 ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae--d~i~s~ChH~FCrlCi~eyv~~f~~~---~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 514 AADHPDLVLYSANANLPDENKGEVECGLCHDPAE--DYIESSCHHKFCRLCIKEYVESFMEN---NNVTCPVCHIGLSI 587 (791)
T ss_pred hccCcceeeehhhcCCCccccCceeecccCChhh--hhHhhhhhHHHHHHHHHHHHHhhhcc---cCCCCccccccccc
Confidence 35777777665444444433 3589999999843 46777999999999999999987655 57999999876643
No 59
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.69 E-value=0.03 Score=38.31 Aligned_cols=42 Identities=26% Similarity=0.631 Sum_probs=28.2
Q ss_pred CccccccccCCCceeecCC--C---ccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCY--H---VYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~--H---vFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|-||++.-.+++.+..+|. = ..|.+||..|+.... ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-------SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC------CCcCCCC
Confidence 6789888766665566654 4 789999999999743 3469887
No 60
>KOG0311|consensus
Probab=93.48 E-value=0.015 Score=55.39 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=39.0
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+-.|+||++.|.. ...-..|+|-|-.+||..=++. .|..||.|++.+.-
T Consensus 43 ~v~c~icl~llk~-tmttkeClhrfc~~ci~~a~r~-------gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKK-TMTTKECLHRFCFDCIWKALRS-------GNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHh-------cCCCCchHHhhccc
Confidence 5789999999854 2333579999999999999987 35679999986543
No 61
>PHA02862 5L protein; Provisional
Probab=92.88 E-value=0.082 Score=45.03 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=34.5
Q ss_pred CCcCccccccccCCCceee-cC---CCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-TC---YHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C---~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
++.|-||.++- ++.++- .| .-..|.+||.+|+..... -.|++|+.+..
T Consensus 2 ~diCWIC~~~~--~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k------~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVC--DERNNFCGCNEEYKVVHIKCMQLWINYSKK------KECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcC--CCCcccccccCcchhHHHHHHHHHHhcCCC------cCccCCCCeEE
Confidence 56799999973 232331 34 578999999999975433 46999998764
No 62
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4185|consensus
Probab=92.31 E-value=0.17 Score=45.29 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=39.1
Q ss_pred CcCccccccccCCC----ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN----CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~~gd----~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+.|.||.++++.++ +..|.|||.|=..|+...+.+. ...||.|+.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-------RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-------eeeccCCCCcc
Confidence 57999999998875 2337899999999999998863 34589999987
No 64
>KOG2879|consensus
Probab=92.28 E-value=0.13 Score=47.71 Aligned_cols=51 Identities=22% Similarity=0.566 Sum_probs=39.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
++.+|++|.++= .---+...|+|+|---|+..-+.. .+.+.||.|+.++-|
T Consensus 238 ~~~~C~~Cg~~P-tiP~~~~~C~HiyCY~Ci~ts~~~------~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPP-TIPHVIGKCGHIYCYYCIATSRLW------DASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCC-CCCeeeccccceeehhhhhhhhcc------hhhcccCccCCCCcc
Confidence 468999999873 211245679999999999988764 256889999988765
No 65
>KOG1039|consensus
Probab=92.21 E-value=0.093 Score=49.69 Aligned_cols=54 Identities=17% Similarity=0.537 Sum_probs=37.9
Q ss_pred CCcCccccccccCCC--cee----ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN--CIR----LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd--~vR----L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+..|.||++...+.. ..| ++|.|.|=..||+.|-.....+ ..-...||.|+.++
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~-~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFE-SKTSKSCPFCRVPS 220 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccc-cccccCCCcccCcc
Confidence 679999999886532 223 3699999999999997443211 11145799998754
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.16 E-value=0.15 Score=43.91 Aligned_cols=49 Identities=16% Similarity=0.437 Sum_probs=35.3
Q ss_pred CCCCcCccccccccCCCceeec--CCC---ccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIRLT--CYH---VYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vRL~--C~H---vFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
..+..|-||.++-. +. .-+ |-. ..|.+||..|+..... -.|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~--~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~------~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV-TNYCNCKNENKIVHKECLEEWINTSKN------KSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC--Cc-cCCcccCCCchHHHHHHHHHHHhcCCC------CcccccCCeEE
Confidence 45789999988732 22 235 444 6799999999997533 46999998753
No 67
>KOG1814|consensus
Probab=91.91 E-value=0.17 Score=49.22 Aligned_cols=52 Identities=29% Similarity=0.561 Sum_probs=36.3
Q ss_pred CcCccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-.|.||.++....+. +-|+|+|||-.+|+..|+...-..---...+||.++-
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 469999999644344 5589999999999999987643221122356877654
No 68
>KOG4172|consensus
Probab=91.47 E-value=0.062 Score=39.17 Aligned_cols=47 Identities=21% Similarity=0.609 Sum_probs=33.1
Q ss_pred CCCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
.+..|.||.+.- =|.|.-.|||. +--+|-.+..+.. +-.||+|+.+|
T Consensus 6 ~~dECTICye~p--vdsVlYtCGHMCmCy~Cg~rl~~~~-------~g~CPiCRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHP--VDSVLYTCGHMCMCYACGLRLKKAL-------HGCCPICRAPI 53 (62)
T ss_pred cccceeeeccCc--chHHHHHcchHHhHHHHHHHHHHcc-------CCcCcchhhHH
Confidence 347899999863 23566689997 4567766666643 34699999876
No 69
>KOG2114|consensus
Probab=91.42 E-value=0.11 Score=54.35 Aligned_cols=40 Identities=33% Similarity=0.798 Sum_probs=32.4
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+.|..|...|+- -.|-..|||.||..|+. . ....||.|..
T Consensus 841 skCs~C~~~Ldl-P~VhF~CgHsyHqhC~e---~--------~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDL-PFVHFLCGHSYHQHCLE---D--------KEDKCPKCLP 880 (933)
T ss_pred eeecccCCcccc-ceeeeecccHHHHHhhc---c--------CcccCCccch
Confidence 689999999843 25778999999999999 1 2357999965
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.13 E-value=0.085 Score=44.08 Aligned_cols=34 Identities=12% Similarity=0.414 Sum_probs=29.2
Q ss_pred CCcCccccccccC-CCceeecCC------CccCHHHHHHHH
Q psy15061 50 NPTCELCRKDLAA-ENCIRLTCY------HVYHWSCLNHYA 83 (226)
Q Consensus 50 d~~C~IC~~~L~~-gd~vRL~C~------HvFH~~CLd~wl 83 (226)
...|.||.+.+.+ +-+|.++|| |+||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 5789999999988 347778887 899999999993
No 71
>KOG2660|consensus
Probab=90.85 E-value=0.12 Score=48.68 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=39.6
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..-.|.+|.+.|-+ .+..--|+|.|-.+||-.+|.. .+ .||.|+..|--
T Consensus 14 ~~itC~LC~GYliD-ATTI~eCLHTFCkSCivk~l~~--~~------~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLID-ATTITECLHTFCKSCIVKYLEE--SK------YCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeec-chhHHHHHHHHHHHHHHHHHHH--hc------cCCccceeccC
Confidence 34789999999854 3555689999999999999998 23 49999987754
No 72
>KOG0309|consensus
Probab=90.79 E-value=0.19 Score=52.36 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=28.8
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLP 87 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p 87 (226)
-.|.+|--.......+-+.|+|+.|.+|..+|++...
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC
Confidence 3488887766444456689999999999999999743
No 73
>KOG1785|consensus
Probab=90.34 E-value=0.11 Score=50.77 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=35.5
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..|-||-+. +.|+-.=+|||++-..||-.|-.+- .|-.||-|+-.|-=
T Consensus 370 eLCKICaen--dKdvkIEPCGHLlCt~CLa~WQ~sd------~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN--DKDVKIEPCGHLLCTSCLAAWQDSD------EGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc--CCCcccccccchHHHHHHHhhcccC------CCCCCCceeeEecc
Confidence 467777664 3344445999999999999997653 35569999988753
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.22 E-value=0.21 Score=34.99 Aligned_cols=44 Identities=23% Similarity=0.559 Sum_probs=20.3
Q ss_pred CccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
|++|.++|+..+.-.+ .|+.-+=..|...-++. .+-.||.|+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-------~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-------EGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-------S-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-------cCCCCCCCCCC
Confidence 7899999976665444 57866655565554442 35689999986
No 75
>KOG2817|consensus
Probab=89.44 E-value=0.32 Score=46.93 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=39.4
Q ss_pred CcCccccccccCCC-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 51 ~~C~IC~~~L~~gd-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
-.|||-.+.-.+.. +++|.||||.=.+-|+..-++... .|+||-|-....
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~-----sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQ-----SFKCPYCPVEQL 385 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCe-----eeeCCCCCcccC
Confidence 57898887765544 799999999999999999887432 489999965444
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.13 E-value=0.58 Score=41.97 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCCcCccccccccCCC-ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN-CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd-~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..-.|+|...+|.... .|-| +|||||=..+|.+.- . +-.||+|.+++..
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~------~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---K------SKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---c------cccccccCCcccc
Confidence 3468999999994433 3445 999999999999983 1 1259999998664
No 77
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.09 E-value=0.23 Score=44.67 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=40.6
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVS 112 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~S 112 (226)
-.|.||.+++.. .|.-.|||.|-..|...-++.. -.|-+|.+...-.-.+++
T Consensus 197 F~C~iCKkdy~s--pvvt~CGH~FC~~Cai~~y~kg--------~~C~~Cgk~t~G~f~V~~ 248 (259)
T COG5152 197 FLCGICKKDYES--PVVTECGHSFCSLCAIRKYQKG--------DECGVCGKATYGRFWVVS 248 (259)
T ss_pred eeehhchhhccc--hhhhhcchhHHHHHHHHHhccC--------CcceecchhhccceeHHh
Confidence 489999999865 6778999999999999888763 469999987654333333
No 78
>KOG3039|consensus
Probab=86.29 E-value=0.66 Score=42.88 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.9
Q ss_pred CcCccccccccCCC-ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN-CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd-~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|++|...|.+-. .+.| +|||||-.+|....++. ...||+|.+++--
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--------D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--------DMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--------cccccCCCCcCcc
Confidence 47999999998865 3455 89999999999999986 4579999988753
No 79
>KOG1813|consensus
Probab=85.49 E-value=0.46 Score=44.58 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=40.0
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
-.|-||.++|.. .|+-.|+|.|-..|...-++.. -.|++|.+.+---.+
T Consensus 242 f~c~icr~~f~~--pVvt~c~h~fc~~ca~~~~qk~--------~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 242 FKCFICRKYFYR--PVVTKCGHYFCEVCALKPYQKG--------EKCYVCSQQTHGSFN 290 (313)
T ss_pred cccccccccccc--chhhcCCceeehhhhccccccC--------Ccceecccccccccc
Confidence 459999999865 6888999999999999888863 369999998864333
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.30 E-value=0.38 Score=34.68 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=31.2
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
..|..|...=.. -+.|+|+|+.=..|.+-+--+ .||.|.+++-+.+
T Consensus 8 ~~~~~~~~~~~~--~~~~pCgH~I~~~~f~~~rYn----------gCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTK--GTVLPCGHLICDNCFPGERYN----------GCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccc--cccccccceeeccccChhhcc----------CCCCCCCcccCCC
Confidence 345555443222 366899999999998866322 3999999997754
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.16 E-value=1.4 Score=37.97 Aligned_cols=54 Identities=20% Similarity=0.580 Sum_probs=35.9
Q ss_pred CCcCccccccccCCCceeec------------CC-CccCHHHHHHHHHhCCCCCC-----------------------CC
Q psy15061 50 NPTCELCRKDLAAENCIRLT------------CY-HVYHWSCLNHYARQLPSTTA-----------------------PA 93 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~------------C~-HvFH~~CLd~wl~~~p~nTa-----------------------pa 93 (226)
+..|+||++.=.+ .|-|. |+ -.-|..|||++-+.....+. ..
T Consensus 2 d~~CpICme~PHN--AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 2 DVTCPICMEHPHN--AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CccCceeccCCCc--eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 4679999987544 23333 33 34599999999775432221 12
Q ss_pred CCCCCCCCCCCC
Q psy15061 94 GYKCPQCKTGLF 105 (226)
Q Consensus 94 g~~CP~C~~~I~ 105 (226)
...||+|+..|.
T Consensus 80 ~L~CPLCRG~V~ 91 (162)
T PF07800_consen 80 ELACPLCRGEVK 91 (162)
T ss_pred cccCccccCcee
Confidence 478999999987
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.89 E-value=0.52 Score=31.75 Aligned_cols=42 Identities=29% Similarity=0.707 Sum_probs=22.8
Q ss_pred CccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 53 C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
|.+|.+-...|.. -.-.|+=-+|..|+..|++..... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~------~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNP------KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-------B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCC------CCcCC
Confidence 6677777766631 113477779999999999986432 69988
No 83
>KOG3053|consensus
Probab=84.84 E-value=0.56 Score=43.45 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=49.3
Q ss_pred CCCCcCccccccccCCCcee---ecC-----CCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC---CCCCCCCCChHHH
Q psy15061 48 DYNPTCELCRKDLAAENCIR---LTC-----YHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG---LFPPNNLVSPVAD 116 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vR---L~C-----~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~---I~P~~n~~Spva~ 116 (226)
+-+-.|=||...=++ +-.+ =+| -|=.|.+||..|+..+....+-+...||.|++. +||+.+..+.+.+
T Consensus 18 e~eR~CWiCF~TdeD-n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~~~~Le 96 (293)
T KOG3053|consen 18 ELERCCWICFATDED-NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPFDRVLE 96 (293)
T ss_pred ccceeEEEEeccCcc-cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChHHHHHH
Confidence 456789999876332 2111 144 378999999999998776666677899999997 5777766665555
Q ss_pred HH
Q psy15061 117 VL 118 (226)
Q Consensus 117 ~L 118 (226)
.+
T Consensus 97 ~~ 98 (293)
T KOG3053|consen 97 RL 98 (293)
T ss_pred Hh
Confidence 43
No 84
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=84.65 E-value=0.046 Score=36.70 Aligned_cols=48 Identities=21% Similarity=0.596 Sum_probs=34.1
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
.|.||.+...+++.|. -.|+-.||..|+..-....... .+.+.||.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~--~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP--SGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH--SSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCC--CCcEECcCCc
Confidence 3889999655555555 4899999999998776543221 1378899885
No 85
>KOG1571|consensus
Probab=84.15 E-value=0.54 Score=44.89 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=31.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.|.||.++..+ .+=++|||+-= |..-... .+ +||+|++.|-
T Consensus 305 p~lcVVcl~e~~~--~~fvpcGh~cc--ct~cs~~-l~--------~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS--AVFVPCGHVCC--CTLCSKH-LP--------QCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccc--eeeecCCcEEE--chHHHhh-CC--------CCchhHHHHH
Confidence 4899999998655 67789999944 5544432 22 4999998763
No 86
>KOG4159|consensus
Probab=83.28 E-value=0.82 Score=44.19 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=36.5
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|.||..-|-. +|-++|||.|=..||+.-+.+.+ .||.|+.++.-
T Consensus 85 f~c~vc~~~l~~--pv~tpcghs~c~~Cl~r~ld~~~--------~cp~Cr~~l~e 130 (398)
T KOG4159|consen 85 FECCVCSRALYP--PVVTPCGHSFCLECLDRSLDQET--------ECPLCRDELVE 130 (398)
T ss_pred hhhhhhHhhcCC--CccccccccccHHHHHHHhccCC--------CCccccccccc
Confidence 469999777754 56679999999999999665432 59999998874
No 87
>KOG0297|consensus
Probab=83.06 E-value=1.1 Score=42.77 Aligned_cols=53 Identities=30% Similarity=0.563 Sum_probs=42.6
Q ss_pred CCCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~ 110 (226)
|-+-.|++|...+.+ .+. ..|||.|=..|+++|+... ..||.|+..+.....+
T Consensus 19 ~~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~--------~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNH--------QKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccC--CCCCCCCCCcccccccchhhccC--------cCCcccccccchhhcc
Confidence 346789999999865 344 7999999999999999973 2599999988765544
No 88
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.39 E-value=0.76 Score=39.96 Aligned_cols=38 Identities=32% Similarity=0.923 Sum_probs=27.2
Q ss_pred CcCccccc-----cccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRK-----DLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 51 ~~C~IC~~-----~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
-.|.+|.. +|+...++| -.|+-+||.+|..+ . .||.|.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~-----------~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--K-----------SCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--C-----------CCCCcH
Confidence 46777764 233445667 68999999999983 1 399995
No 89
>KOG3800|consensus
Probab=80.72 E-value=1.6 Score=40.79 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=35.5
Q ss_pred cCcccccccc-CCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLA-AENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 52 ~C~IC~~~L~-~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-|++|+..-= +-+.+-| +|||-.-.+|.|..+...+ +.||-|++.+.-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~-------~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP-------AQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC-------CCCCcccchhhh
Confidence 4888877642 2333222 8999999999999998865 469999986653
No 90
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=80.36 E-value=0.71 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=25.5
Q ss_pred cccCCCCcccccceeeeccccccccccCCCCcce
Q psy15061 3 LCKCPKRKVTNQFCYEHRVNVCEYCMVTNHPKCI 36 (226)
Q Consensus 3 lCkc~krk~T~~fCf~HrvnVCe~C~v~~H~~Cv 36 (226)
.|.--++...++||...++.+|..|++..|..-.
T Consensus 5 ~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~H~ 38 (42)
T PF00643_consen 5 KCPEHPEEPLSLFCEDCNEPLCSECTVSGHKGHK 38 (42)
T ss_dssp B-SSTTTSBEEEEETTTTEEEEHHHHHTSTTTSE
T ss_pred cCccCCccceEEEecCCCCccCccCCCCCCCCCE
Confidence 4544445557899999999999999987786533
No 91
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=79.82 E-value=1.8 Score=26.36 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=26.0
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
.|..|.+.+..++.+...=+..||.+|+ +|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf----------------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECF----------------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCC----------------CCcccCCcC
Confidence 3888999987764433344678888774 588887765
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.23 E-value=2.5 Score=29.25 Aligned_cols=44 Identities=25% Similarity=0.652 Sum_probs=19.1
Q ss_pred cCccccccccCCCceee-cCCCccCHHHHH--HHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRL-TCYHVYHWSCLN--HYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd--~wl~~~p~nTapag~~CP~C~~~ 103 (226)
.|+|....+.. .+|- .|.|+ +|+| .|+.....+ ..++||+|+++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~---~CFDl~~fl~~~~~~---~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHL---QCFDLESFLESNQRT---PKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS-----EEHHHHHHHHHHS------B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCccc---ceECHHHHHHHhhcc---CCeECcCCcCc
Confidence 57777777644 6884 79876 4644 455543322 24899999874
No 93
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.37 E-value=2.7 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=27.5
Q ss_pred CCCcCccccccccCC-Ccee-ecCCCccCHHHHHHH
Q psy15061 49 YNPTCELCRKDLAAE-NCIR-LTCYHVYHWSCLNHY 82 (226)
Q Consensus 49 yd~~C~IC~~~L~~g-d~vR-L~C~HvFH~~CLd~w 82 (226)
....|.+|.+.|.++ |+|. -.|+=.+|.+|-+.-
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 468999999999855 5666 479999999997643
No 94
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=75.19 E-value=1.4 Score=29.70 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=30.9
Q ss_pred CccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
|..|.+.+..++.+...-+..||.+| ++|-.|+++|.+.
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C----------------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC----------------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT----------------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc----------------cccCCCCCccCCC
Confidence 78899999877766557788999877 4699999888654
No 95
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=72.92 E-value=5.8 Score=28.87 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=38.6
Q ss_pred CCCcCccccccccCCCceeecCC--CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCY--HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~--HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
..++|..|..+|..+..-...|. -.|-.+|.+..|.. .||.|+..+.+.
T Consensus 4 lrpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~----------~CPNCgGelv~R 54 (57)
T PF06906_consen 4 LRPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG----------VCPNCGGELVRR 54 (57)
T ss_pred cCCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC----------cCcCCCCccccC
Confidence 46899999999977664455554 47999999999864 599999887653
No 96
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.57 E-value=2.9 Score=40.02 Aligned_cols=45 Identities=27% Similarity=0.481 Sum_probs=35.6
Q ss_pred CcCccccccccCCC-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 51 ~~C~IC~~~L~~gd-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
-+|++-.+.-.+.. ++-|.||||.-.+-|+..-++.. -.|+||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~-----~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV-----LSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc-----EEeeCCCC
Confidence 57998877755443 68899999999999998876533 25999999
No 97
>KOG4739|consensus
Probab=70.94 E-value=1.5 Score=39.76 Aligned_cols=42 Identities=29% Similarity=0.625 Sum_probs=29.0
Q ss_pred CccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 53 CELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 53 C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|-.|..-= .++...| .|+|||-..|...- .+-.||+|+++|-
T Consensus 6 Cn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~----------~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 6 CNKCFRFP-SQDPFFLTACRHVFCEPCLKAS----------SPDVCPLCKKSIR 48 (233)
T ss_pred eccccccC-CCCceeeeechhhhhhhhcccC----------Cccccccccceee
Confidence 45554432 3677786 79999999997432 2237999999864
No 98
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=70.05 E-value=1.6 Score=40.36 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=35.8
Q ss_pred CCcCccccccccC-CCceee--c-CCCccCHHHHHHHHHhCCCCCCCCCCCCC--CCCC
Q psy15061 50 NPTCELCRKDLAA-ENCIRL--T-CYHVYHWSCLNHYARQLPSTTAPAGYKCP--QCKT 102 (226)
Q Consensus 50 d~~C~IC~~~L~~-gd~vRL--~-C~HvFH~~CLd~wl~~~p~nTapag~~CP--~C~~ 102 (226)
+..|+||+.+--- -|+..| + |+|-+-.+|.|.-+...|+ +|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpA-------qCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPA-------QCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCC-------CCCCccHHH
Confidence 4689999887533 344444 3 9999999999999998877 499 7864
No 99
>KOG2066|consensus
Probab=69.49 E-value=1.8 Score=45.26 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCCcCccccccccC-C----CceeecCCCccCHHHHHHHHHh
Q psy15061 49 YNPTCELCRKDLAA-E----NCIRLTCYHVYHWSCLNHYARQ 85 (226)
Q Consensus 49 yd~~C~IC~~~L~~-g----d~vRL~C~HvFH~~CLd~wl~~ 85 (226)
+...|..|.++... | .++++.|+|+||.+|+-....+
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 45789999888653 3 3678999999999999887665
No 100
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.32 E-value=3.9 Score=39.02 Aligned_cols=43 Identities=26% Similarity=0.653 Sum_probs=35.1
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-.|++|..-|.+ .++- -|+|.|-.+||..-|.. ..|.||.|.+
T Consensus 275 LkCplc~~Llrn--p~kT~cC~~~fc~eci~~al~d-------sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN--PMKTPCCGHTFCDECIGTALLD-------SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC--cccCccccchHHHHHHhhhhhh-------ccccCCCccc
Confidence 689999998865 4554 69999999999977664 3689999976
No 101
>KOG0827|consensus
Probab=67.28 E-value=0.48 Score=46.13 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=39.6
Q ss_pred CCcCccccccccCC-C-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE-N-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~g-d-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
...|+||.+.|... + .-.+.|||.+|..||.+||.... +||.|++.+-
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~--------kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR--------KLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH--------HhHHHHhhhh
Confidence 46799999999775 4 34589999999999999998732 6999998764
No 102
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.43 E-value=5.3 Score=38.84 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=33.7
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
+.+|.||.+.+.- +-+++|+|-.--.|....-.-.. ...||+|++.
T Consensus 61 n~~C~ICA~~~TY--s~~~PC~H~~CH~Ca~RlRALY~------~K~C~~CrTE 106 (493)
T COG5236 61 NMNCQICAGSTTY--SARYPCGHQICHACAVRLRALYM------QKGCPLCRTE 106 (493)
T ss_pred cceeEEecCCceE--EEeccCCchHHHHHHHHHHHHHh------ccCCCccccc
Confidence 4899999887744 45789999998888776533221 2359999985
No 103
>KOG1829|consensus
Probab=65.38 E-value=1.5 Score=44.44 Aligned_cols=39 Identities=38% Similarity=0.873 Sum_probs=25.6
Q ss_pred CcCccccc-----cccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRK-----DLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 51 ~~C~IC~~-----~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
..|.+|+. +|....+.| ..|+++||.+|+..--. .||.|
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~-----------~CPrC 556 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKSP-----------CCPRC 556 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccCC-----------CCCch
Confidence 45666632 233333566 79999999999875422 29999
No 104
>KOG3005|consensus
Probab=62.27 E-value=4.5 Score=37.59 Aligned_cols=52 Identities=29% Similarity=0.657 Sum_probs=41.1
Q ss_pred CcCccccccccCCCceee-----cCCCccCHHHHHHH-HHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL-----TCYHVYHWSCLNHY-ARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-----~C~HvFH~~CLd~w-l~~~p~nTapag~~CP~C~~ 102 (226)
..|.+|.+++.+-+..|+ .|.=++|..||-+. +..-+.+--|-+-.||.|.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~ 240 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK 240 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc
Confidence 589999999976666665 37789999999994 55556665667789999987
No 105
>KOG1815|consensus
Probab=62.08 E-value=2.4 Score=40.81 Aligned_cols=63 Identities=19% Similarity=0.506 Sum_probs=48.0
Q ss_pred ccccccCCCCcceeeeehhhccCCC-C----------CCcCccccccccCCC----ceee--cCCCccCHHHHHHHHHhC
Q psy15061 24 CEYCMVTNHPKCIVQSYLQWLEDSD-Y----------NPTCELCRKDLAAEN----CIRL--TCYHVYHWSCLNHYARQL 86 (226)
Q Consensus 24 Ce~C~v~~H~~CvVqSYlqWL~DsD-y----------d~~C~IC~~~L~~gd----~vRL--~C~HvFH~~CLd~wl~~~ 86 (226)
|..|.-+.|.-+..+....||+... . ...|+.|..++.... .... .|.|.|.|-|+..|-...
T Consensus 189 C~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 189 CFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred HhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 7778999999998889999987431 1 155999999986643 1223 599999999999987753
No 106
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=62.07 E-value=5.6 Score=33.40 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLSS 124 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~laq 124 (226)
||.||.|+.++....| |-+.++|+++|..
T Consensus 128 ~F~Cp~Cg~~L~~~dn--~~~i~~l~~~i~~ 156 (158)
T TIGR00373 128 NFTCPRCGAMLDYLDN--SEAIEKLEEQIKF 156 (158)
T ss_pred CCcCCCCCCEeeeccC--HHHHHHHHHHHHh
Confidence 7899999999876444 6678888888763
No 107
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=61.01 E-value=7.3 Score=33.45 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhhhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLSSV 125 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~laq~ 125 (226)
+|.||.|+..+..-. .+-.+.+|+++|.+-
T Consensus 136 ~F~Cp~Cg~~L~~~d--n~~~~~~l~~~I~~l 165 (178)
T PRK06266 136 GFRCPQCGEMLEEYD--NSELIKELKEQIKEL 165 (178)
T ss_pred CCcCCCCCCCCeecc--cHHHHHHHHHHHHHH
Confidence 799999999998754 466788888887654
No 108
>KOG3002|consensus
Probab=60.69 E-value=7.5 Score=36.28 Aligned_cols=57 Identities=21% Similarity=0.465 Sum_probs=36.7
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHh
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKL 122 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~l 122 (226)
-.|+||.+.|..- .+.|. -+|..|-.=-.+.. .+||.|+.+|- ++.+..+|++-|.+
T Consensus 49 leCPvC~~~l~~P---i~QC~-nGHlaCssC~~~~~--------~~CP~Cr~~~g---~~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP---IFQCD-NGHLACSSCRTKVS--------NKCPTCRLPIG---NIRCRAMEKVAEAV 105 (299)
T ss_pred ccCchhhccCccc---ceecC-CCcEehhhhhhhhc--------ccCCccccccc---cHHHHHHHHHHHhc
Confidence 7899999998542 35663 34444444333221 26999999885 67777777766554
No 109
>PHA03096 p28-like protein; Provisional
Probab=60.45 E-value=5.4 Score=36.95 Aligned_cols=47 Identities=15% Similarity=0.327 Sum_probs=33.0
Q ss_pred CcCccccccccCCCc--ee---e-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENC--IR---L-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~--vR---L-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-.|.||++...+... -| | .|-|.|-..|+..|...... .-.||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~-----~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLY-----KETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhh-----cccCccccc
Confidence 679999998765421 12 3 79999999999999876322 234666644
No 110
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=59.30 E-value=9.1 Score=28.02 Aligned_cols=46 Identities=24% Similarity=0.704 Sum_probs=33.2
Q ss_pred CCCcCccccccccCCC-ceee---cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN-CIRL---TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd-~vRL---~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
..+.|.-|...|..++ -++. .||.+.=+.|-.=--+. ..|+||.|.
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~~-------~~Y~CP~CG 55 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQS-------NPYTCPKCG 55 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhcC-------CceECCCCC
Confidence 3467999999998766 5665 68887666676554333 369999996
No 111
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.10 E-value=11 Score=36.68 Aligned_cols=54 Identities=20% Similarity=0.468 Sum_probs=35.1
Q ss_pred CCCcCccccccccCCCcee--ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR--LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR--L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~ 110 (226)
.+.-|++|.++++-.|.-- -+||=-+-.=|...--+.+.. +||.|++- +-..|+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lng-------rcpacrr~-y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNG-------RCPACRRK-YDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccC-------CChHhhhh-ccccce
Confidence 4455999999998776433 367765555565555554433 69999874 444554
No 112
>KOG1609|consensus
Probab=55.72 E-value=5.4 Score=35.22 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=36.8
Q ss_pred CcCccccccccCCC--ceeecC--C---CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN--CIRLTC--Y---HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 51 ~~C~IC~~~L~~gd--~vRL~C--~---HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
..|.||..+..... .+..+| . ...|.+|+..|+.... ...|..|.....+.
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~------~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG------NITCEICKSFFINV 136 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc------Ceeeecccccceec
Confidence 68999999876543 344444 3 6779999999998543 34699998866553
No 113
>KOG4275|consensus
Probab=54.56 E-value=2 Score=40.57 Aligned_cols=42 Identities=24% Similarity=0.710 Sum_probs=29.0
Q ss_pred CCcCccccccccCCCceeecCCCcc-CHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVY-HWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvF-H~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|.||++. ..|.+-|.|||.. -.+|-...- .||+||+-|.
T Consensus 300 ~~LC~ICmDa--P~DCvfLeCGHmVtCt~CGkrm~------------eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA--PRDCVFLECGHMVTCTKCGKRMN------------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC--CcceEEeecCcEEeehhhccccc------------cCchHHHHHH
Confidence 4679999875 4568999999975 344433322 3999987653
No 114
>KOG2071|consensus
Probab=52.15 E-value=6.9 Score=39.73 Aligned_cols=42 Identities=21% Similarity=0.562 Sum_probs=33.1
Q ss_pred ccCCCCCCcCccccccccC-----------CCceeecCCCccCHHHHHHHHHh
Q psy15061 44 LEDSDYNPTCELCRKDLAA-----------ENCIRLTCYHVYHWSCLNHYARQ 85 (226)
Q Consensus 44 L~DsDyd~~C~IC~~~L~~-----------gd~vRL~C~HvFH~~CLd~wl~~ 85 (226)
-.|++..-.|+||++.|.+ .|.|+|.=|-+||..|+.+-..+
T Consensus 507 p~d~e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~~~ 559 (579)
T KOG2071|consen 507 PADSERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKRAQ 559 (579)
T ss_pred ccCcccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHHHh
Confidence 3455667899999999963 13788888999999999987644
No 115
>KOG2932|consensus
Probab=51.42 E-value=5.2 Score=38.26 Aligned_cols=66 Identities=23% Similarity=0.452 Sum_probs=43.1
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC-------CChHHHHHHHHh
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL-------VSPVADVLREKL 122 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~-------~Spva~~Lre~l 122 (226)
--|.-|-.++.- -=|| +|-|||-.+|...-- ...||.|...|.--..+ -+.+.--||..|
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~~~----------dK~Cp~C~d~VqrIeq~~~g~iFmC~~~~GC~RTyL 158 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARSDS----------DKICPLCDDRVQRIEQIMMGGIFMCAAPHGCLRTYL 158 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhcCc----------cccCcCcccHHHHHHHhcccceEEeecchhHHHHHh
Confidence 357888777632 1264 899999999975432 34699998876532111 233445788888
Q ss_pred hhhhhh
Q psy15061 123 SSVNWA 128 (226)
Q Consensus 123 aq~~Wa 128 (226)
+|....
T Consensus 159 sqrDlq 164 (389)
T KOG2932|consen 159 SQRDLQ 164 (389)
T ss_pred hHHHHH
Confidence 888763
No 116
>KOG1701|consensus
Probab=50.87 E-value=3.4 Score=40.69 Aligned_cols=91 Identities=18% Similarity=0.394 Sum_probs=48.0
Q ss_pred CcccccceeeeccccccccccCCCCcceeeeeh--h-hcc--CCCCC---CcCccccccccCCCceeecCCCccCHHHHH
Q psy15061 9 RKVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYL--Q-WLE--DSDYN---PTCELCRKDLAAENCIRLTCYHVYHWSCLN 80 (226)
Q Consensus 9 rk~T~~fCf~HrvnVCe~C~v~~H~~CvVqSYl--q-WL~--DsDyd---~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd 80 (226)
+-.-..|=++-....||.|+...-.+|.+..=+ + .|+ ...|. -.|.+|.+.|+ |....+.=..-.| |++
T Consensus 311 ~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d~iLrA~GkayHp~CF~Cv~C~r~ld-gipFtvd~~n~v~--Cv~ 387 (468)
T KOG1701|consen 311 QLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMDRILRALGKAYHPGCFTCVVCARCLD-GIPFTVDSQNNVY--CVP 387 (468)
T ss_pred hhccccccccCCcccchHHHHHHHHHHhhhhhHHHHHHHHhcccccCCCceEEEEeccccC-CccccccCCCcee--eeh
Confidence 333344666777788888876666666654411 1 111 12354 45777887773 3321111111111 233
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 81 HYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 81 ~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
.+-+++.. +|-+|..+|.|..-
T Consensus 388 dfh~kfAP-------rCs~C~~PI~P~~G 409 (468)
T KOG1701|consen 388 DFHKKFAP-------RCSVCGNPILPRDG 409 (468)
T ss_pred hhhhhcCc-------chhhccCCccCCCC
Confidence 33334433 59999999999654
No 117
>KOG1812|consensus
Probab=50.79 E-value=15 Score=35.24 Aligned_cols=70 Identities=21% Similarity=0.466 Sum_probs=43.2
Q ss_pred CCcCccccccccCC-Cce-eecCCCccCHHHHHHHHHhCCCCCCCCCCCCCC--CCCCCCCC--CCCCChHHHHHHHHhh
Q psy15061 50 NPTCELCRKDLAAE-NCI-RLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQ--CKTGLFPP--NNLVSPVADVLREKLS 123 (226)
Q Consensus 50 d~~C~IC~~~L~~g-d~v-RL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~--C~~~I~P~--~n~~Spva~~Lre~la 123 (226)
..+|.||..+...+ +.. -+.|+|-|=.+|..++++... ......+||- |...+-+. .++..| +|++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~--~~~~~~~C~~~~C~~~l~~~~c~~llt~---kl~e~~e 220 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKL--LSGTVIRCPHDGCESRLTLESCRKLLTP---KLREMWE 220 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhh--ccCCCccCCCCCCCccCCHHHHhhhcCH---HHHHHHH
Confidence 57899999555454 333 368999999999999998642 2223455654 65544432 223444 5555543
Q ss_pred h
Q psy15061 124 S 124 (226)
Q Consensus 124 q 124 (226)
+
T Consensus 221 ~ 221 (384)
T KOG1812|consen 221 Q 221 (384)
T ss_pred H
Confidence 3
No 118
>KOG4362|consensus
Probab=50.07 E-value=6.3 Score=40.77 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=52.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHhhhhhhh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVA-DVLREKLSSVNWA 128 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva-~~Lre~laq~~Wa 128 (226)
...|+||.+...+- +++.|.|.|=..|++.-+...+. -..||+|+..+--.+...|+.- +..++.+.+..-.
T Consensus 21 ~lEc~ic~~~~~~p--~~~kc~~~~l~~~~n~~f~~~~~-----~~~~~lc~~~~eK~s~~Es~r~sq~vqe~lk~k~~~ 93 (684)
T KOG4362|consen 21 ILECPICLEHVKEP--SLLKCDHIFLKFCLNKLFESKKG-----PKQCALCKSDIEKRSLRESPRFSQLSKESLKTKSAS 93 (684)
T ss_pred hccCCceeEEeecc--chhhhhHHHHhhhhhceeeccCc-----cccchhhhhhhhhhhccccchHHHHHHHhcCCcccc
Confidence 57899999998764 78999999999999999887542 4679999976655443334433 3334444433333
Q ss_pred hhhcC
Q psy15061 129 RVGLG 133 (226)
Q Consensus 129 r~glg 133 (226)
..+.|
T Consensus 94 ~~~~~ 98 (684)
T KOG4362|consen 94 QCDTG 98 (684)
T ss_pred ccccc
Confidence 33333
No 119
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=49.65 E-value=11 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.2
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHh
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQ 85 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~ 85 (226)
.|.||.+++-.|+.--..=.=+.||.|+..-+..
T Consensus 4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~~~~~~ 37 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKKGPVHYECFREKASK 37 (101)
T ss_pred EEEecCCeeeecceEEEecCCcEeHHHHHHHHhh
Confidence 6999999999998655544468999999998775
No 120
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=49.57 E-value=18 Score=27.70 Aligned_cols=36 Identities=25% Similarity=0.725 Sum_probs=27.5
Q ss_pred ccCCCCCCcCccccccccCCCcee---ecCCCccCHHHHHH
Q psy15061 44 LEDSDYNPTCELCRKDLAAENCIR---LTCYHVYHWSCLNH 81 (226)
Q Consensus 44 L~DsDyd~~C~IC~~~L~~gd~vR---L~C~HvFH~~CLd~ 81 (226)
+..+.+...|.||... .|..|+ -.|.-.||..|...
T Consensus 49 i~~~~~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 49 IPPSRFKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred ecchhcCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 3333467899999998 676666 35999999999855
No 121
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=47.28 E-value=18 Score=26.69 Aligned_cols=45 Identities=24% Similarity=0.738 Sum_probs=35.1
Q ss_pred CCcCccccccccCCCc-eee---cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENC-IRL---TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~-vRL---~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
-+.|.-|...|..++. +.. .||-+.=+.|..-.... +-|+||.|.
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g-------~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLG-------NPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcC-------CceECCCcC
Confidence 4789999999987763 444 69989889998776554 349999996
No 122
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=46.32 E-value=23 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCC-CCCCCCChHHHHHHHHhhhhhhhhhhcCCCC
Q psy15061 94 GYKCPQCKTGLF-PPNNLVSPVADVLREKLSSVNWARVGLGLPL 136 (226)
Q Consensus 94 g~~CP~C~~~I~-P~~n~~Spva~~Lre~laq~~War~glgl~l 136 (226)
...||+|++++. -+.+..-|.=++.-+.|---.|+......|-
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~ 49 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPS 49 (62)
T ss_pred cccCCCCCCcccccCCCCcCCcccHHHHhhhHHHHHcCCcccCC
Confidence 467999999874 3456666777777778888889988887775
No 123
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.45 E-value=20 Score=28.84 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=31.0
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPS 88 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~ 88 (226)
-.|.||.+++.+|+..-..=.=-.|++|+.+-.++++.
T Consensus 7 wkC~VCg~~iieGqkFTF~~kGsVH~eCl~~s~~~k~~ 44 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTKKGSVHYECLAESKRKKPG 44 (103)
T ss_pred eeEeeeCCEeeeccEEEEeeCCcchHHHHHHHHhcCcC
Confidence 36999999999999766544667899999999887654
No 124
>KOG3161|consensus
Probab=42.91 E-value=8.9 Score=39.87 Aligned_cols=42 Identities=21% Similarity=0.534 Sum_probs=33.4
Q ss_pred CcCccccccccCC--CceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAE--NCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 51 ~~C~IC~~~L~~g--d~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
-.|.||+..|... +.|-|.|||+.-..|+.....+ +|| |+..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----------scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----------SCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----------cCC-CCcc
Confidence 4689998887664 4688999999999999888765 488 6554
No 125
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.29 E-value=23 Score=27.31 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=37.7
Q ss_pred CCCcCccccccccCCCceeecCC--CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCY--HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~--HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..++|.-|-.+|-.+..-.+.|- +.|-..|...-|.. .||.|...+.-
T Consensus 4 LRPnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g----------~CPnCGGelv~ 53 (84)
T COG3813 4 LRPNCECCDRDLPPDSTDARICTFECTFCADCAENRLHG----------LCPNCGGELVA 53 (84)
T ss_pred ccCCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcC----------cCCCCCchhhc
Confidence 46899999999977665566664 88999999988765 59999876653
No 126
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.87 E-value=38 Score=36.39 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=37.5
Q ss_pred CCcCccccccccCCCceeecCC-----CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCY-----HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~-----HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+..|.||..+=..+++.==+|- -..|.+||-+|+... +..+|-+|..++
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s------~~~kCdiChy~~ 65 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECS------GTKKCDICHYEY 65 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcC------CCcceeeeccee
Confidence 4889999998777776554554 358999999999842 345899998765
No 127
>KOG2068|consensus
Probab=41.29 E-value=21 Score=34.00 Aligned_cols=49 Identities=22% Similarity=0.511 Sum_probs=36.3
Q ss_pred CcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+.|++|.+++...+..-| +|++-.++.|+..-... ..+||.|+++..-.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~--------~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG--------DGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc--------CCCCCccCCccccC
Confidence 789999999977775555 67877777776655443 45799999877643
No 128
>KOG0826|consensus
Probab=39.70 E-value=31 Score=33.21 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=36.4
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
...|+||++.- ..++|--.-|=||-+.|+.+++.+.. .||+=..|+
T Consensus 300 ~~~CpvClk~r-~Nptvl~vSGyVfCY~Ci~~Yv~~~~--------~CPVT~~p~ 345 (357)
T KOG0826|consen 300 REVCPVCLKKR-QNPTVLEVSGYVFCYPCIFSYVVNYG--------HCPVTGYPA 345 (357)
T ss_pred cccChhHHhcc-CCCceEEecceEEeHHHHHHHHHhcC--------CCCccCCcc
Confidence 48999999996 44566667788999999999999643 599865544
No 129
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=37.90 E-value=27 Score=30.39 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLSS 124 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~laq 124 (226)
||+||.|+..+-- .-.|+..+.|.+++..
T Consensus 132 ~F~Cp~Cg~~L~~--~d~s~~i~~l~~~i~~ 160 (176)
T COG1675 132 GFTCPKCGEDLEE--YDSSEEIEELESELDE 160 (176)
T ss_pred CCCCCCCCchhhh--ccchHHHHHHHHHHHH
Confidence 6889999988863 4457788888877754
No 130
>KOG1815|consensus
Probab=37.72 E-value=27 Score=33.72 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=39.6
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCC-CCCCC--CCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQ--CKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag-~~CP~--C~~~I~P 106 (226)
+..|.||.+.+.. +.+++.|+|.|=..|...++...=.. -+.+ .+||. |..-+-+
T Consensus 70 ~~~c~ic~~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~~-~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 70 DVQCGICVESYDG-EIIGLGCGHPFCPPCWTGYLGTKIHE-GEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred cccCCcccCCCcc-hhhhcCCCcHHHHHHHHHHhhheeec-cccccccCCCCCccccCCC
Confidence 4789999999866 78889999999999999999864322 1112 45665 6554443
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.48 E-value=11 Score=36.86 Aligned_cols=69 Identities=32% Similarity=0.475 Sum_probs=0.0
Q ss_pred eeeehhhccCCCC---CCcCccccccc-----c----------CCC-cee-ecCCCccCHHHHHHHHHh-CCCCCCCCCC
Q psy15061 37 VQSYLQWLEDSDY---NPTCELCRKDL-----A----------AEN-CIR-LTCYHVYHWSCLNHYARQ-LPSTTAPAGY 95 (226)
Q Consensus 37 VqSYlqWL~DsDy---d~~C~IC~~~L-----~----------~gd-~vR-L~C~HvFH~~CLd~wl~~-~p~nTapag~ 95 (226)
|+-|-.|-.+.+- .-.|++|+..= . .|. +.. -+|||+-=.+...-|.+- +|-.|.--.-
T Consensus 312 VhG~h~Wg~~~~~~~~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a 391 (416)
T PF04710_consen 312 VHGYHNWGQDSDRDPRSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHA 391 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeecccccccccccccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccc
Confidence 7889999887653 58999998642 1 111 233 389999999999999764 3332211123
Q ss_pred CCCCCCCCCC
Q psy15061 96 KCPQCKTGLF 105 (226)
Q Consensus 96 ~CP~C~~~I~ 105 (226)
.||-|..++-
T Consensus 392 ~CPFCa~~L~ 401 (416)
T PF04710_consen 392 ACPFCATPLD 401 (416)
T ss_dssp ----------
T ss_pred cCCcccCccc
Confidence 6999988775
No 132
>KOG1001|consensus
Probab=37.21 E-value=13 Score=38.21 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=35.3
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
..|.+|.+ ....+.-.|+|.|=.+|+...++.... -.||.|+..+
T Consensus 455 ~~c~ic~~---~~~~~it~c~h~~c~~c~~~~i~~~~~------~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD---LDSFFITRCGHDFCVECLKKSIQQSEN------APCPLCRNVL 499 (674)
T ss_pred cccccccc---cccceeecccchHHHHHHHhccccccC------CCCcHHHHHH
Confidence 68999999 334677799999999999998876332 2799998754
No 133
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=37.18 E-value=24 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=10.8
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHH
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCL 79 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CL 79 (226)
.|.+|.++...+..-+ ..|.=.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 4788888875533444 688888898885
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.36 E-value=21 Score=21.80 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=11.8
Q ss_pred cCccccccccCCCceeecCCCcc
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVY 74 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvF 74 (226)
+|+-|...+......=-.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46667666543322223466665
No 135
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=36.26 E-value=35 Score=28.34 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
..+||.|...-.-++ .+++|..||+.+.
T Consensus 40 ~LRC~vCqnqsiadS--na~iA~dmR~~Vr 67 (126)
T PRK10144 40 QLRCPQCQNQNLLES--NAPVAVSMRHQVY 67 (126)
T ss_pred cCCCCCCCCCChhhc--CCHHHHHHHHHHH
Confidence 468999987666444 5799999998875
No 136
>KOG0801|consensus
Probab=36.09 E-value=20 Score=31.59 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy15061 93 AGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 93 ag~~CP~C~~~I~P~~n 109 (226)
+|++||+|.+.|.++.-
T Consensus 137 ~g~KCPvC~K~V~sDd~ 153 (205)
T KOG0801|consen 137 SGMKCPVCHKVVPSDDA 153 (205)
T ss_pred CCccCCccccccCCCcc
Confidence 58999999998887553
No 137
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.46 E-value=19 Score=22.67 Aligned_cols=9 Identities=33% Similarity=1.088 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy15061 94 GYKCPQCKT 102 (226)
Q Consensus 94 g~~CP~C~~ 102 (226)
...||+|+.
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 357999976
No 138
>KOG3896|consensus
Probab=35.11 E-value=27 Score=34.00 Aligned_cols=41 Identities=27% Similarity=0.665 Sum_probs=26.1
Q ss_pred cccCCCCccccc--ceeeeccccccccc---cCCCCcceeeeehhhccCCCCCCcCccccccccC
Q psy15061 3 LCKCPKRKVTNQ--FCYEHRVNVCEYCM---VTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAA 62 (226)
Q Consensus 3 lCkc~krk~T~~--fCf~HrvnVCe~C~---v~~H~~CvVqSYlqWL~DsDyd~~C~IC~~~L~~ 62 (226)
+|.|.|+..-+. ||-.=-+-.|++|. |++| | |+-|++.+-.
T Consensus 12 ~c~cg~~~pl~~L~FCRyC~klrc~~Cv~hEvdsh----------------f---Cp~CLEn~ps 57 (449)
T KOG3896|consen 12 ECTCGKFRPLPDLVFCRYCFKLRCDDCVLHEVDSH----------------F---CPRCLENSPS 57 (449)
T ss_pred Eeeccccccccceeeeecccccccccccccccccc----------------c---chhhccCCCc
Confidence 578877765544 44333345599996 6666 5 7888887643
No 139
>PF15353 HECA: Headcase protein family homologue
Probab=34.35 E-value=8.2 Score=31.33 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=17.9
Q ss_pred CCceeec-------CCCccCHHHHHHHHHh
Q psy15061 63 ENCIRLT-------CYHVYHWSCLNHYARQ 85 (226)
Q Consensus 63 gd~vRL~-------C~HvFH~~CLd~wl~~ 85 (226)
.|.|++. .+..+|.+|++.|-.+
T Consensus 26 ~d~vkv~Cnne~Cp~~~~MH~~CF~~wE~~ 55 (107)
T PF15353_consen 26 EDGVKVICNNESCPFGQYMHRECFEKWEDS 55 (107)
T ss_pred hccEEEEeCCCCCCCCCchHHHHHHHHHHH
Confidence 4567764 4789999999999665
No 140
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.77 E-value=7 Score=26.92 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=18.4
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 79 LNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 79 Ld~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
+..++..+... .| .||+|.+++-+... .-+...++..+.
T Consensus 9 ~~k~i~~l~~~---~~-~CPlC~r~l~~e~~--~~li~~~~~~i~ 47 (54)
T PF04423_consen 9 LKKYIEELKEA---KG-CCPLCGRPLDEEHR--QELIKKYKSEIE 47 (54)
T ss_dssp HHHHHHHHTT----SE-E-TTT--EE-HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CC-cCCCCCCCCCHHHH--HHHHHHHHHHHH
Confidence 44555544321 23 89999998875432 445555555543
No 142
>KOG1100|consensus
Probab=33.61 E-value=18 Score=31.90 Aligned_cols=40 Identities=25% Similarity=0.615 Sum_probs=26.0
Q ss_pred cCccccccccCCCceeecCCCccC-HHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYH-WSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH-~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.|-.|.+. +..++-|||-|+-+ ..|-.. +. .||+|+.++.
T Consensus 160 ~Cr~C~~~--~~~VlllPCrHl~lC~~C~~~-~~-----------~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGER--EATVLLLPCRHLCLCGICDES-LR-----------ICPICRSPKT 200 (207)
T ss_pred cceecCcC--CceEEeecccceEeccccccc-Cc-----------cCCCCcChhh
Confidence 38888765 33366689998765 445443 22 4999987654
No 143
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=33.49 E-value=40 Score=27.96 Aligned_cols=28 Identities=32% Similarity=0.626 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
..+||.|...-.-++ .+++|..||+.+.
T Consensus 40 ~LRC~vCqnqsiadS--~a~iA~dmR~~Vr 67 (126)
T TIGR03147 40 SLRCPQCQNQNLVES--NSPIAYDLRHEVY 67 (126)
T ss_pred hCCCCCCCCCChhhc--CCHHHHHHHHHHH
Confidence 468999987666444 4789999998875
No 144
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.40 E-value=23 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=14.4
Q ss_pred cCccccccccCCC--------cee-ecCCCccC
Q psy15061 52 TCELCRKDLAAEN--------CIR-LTCYHVYH 75 (226)
Q Consensus 52 ~C~IC~~~L~~gd--------~vR-L~C~HvFH 75 (226)
.|+-|...+.-.| .|+ -.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 5777777775433 233 25777774
No 145
>KOG4367|consensus
Probab=33.03 E-value=24 Score=35.44 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTT 90 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nT 90 (226)
.-.|+||..-+.+ +|.|+|+|-+-..|...-+-+-|...
T Consensus 4 elkc~vc~~f~~e--piil~c~h~lc~~ca~~~~~~tp~~~ 42 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE--PIILPCSHNLCQACARNILVQTPESE 42 (699)
T ss_pred cccCceehhhccC--ceEeecccHHHHHHHHhhcccCCCCC
Confidence 3579999887754 89999999999999988777655543
No 146
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=32.43 E-value=57 Score=32.37 Aligned_cols=52 Identities=21% Similarity=0.389 Sum_probs=33.0
Q ss_pred cCccccccccCCCcee-e---cCCCccCHHHHHHHHHhCCCC-------CCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-L---TCYHVYHWSCLNHYARQLPST-------TAPAGYKCPQCKTG 103 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L---~C~HvFH~~CLd~wl~~~p~n-------Tapag~~CP~C~~~ 103 (226)
-|.||..-=.+.++-+ + .|||.-|.+|.-.--...++. +....|.|-.|.+.
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 4778866322334444 3 699999999987765432221 12346999999764
No 147
>KOG0269|consensus
Probab=31.35 E-value=39 Score=35.74 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=24.7
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQL 86 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~ 86 (226)
..|.+|.-.+. |..+- -.|+|.-|.+||.+|+...
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~ 815 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKA 815 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcC
Confidence 46777765542 22222 3799999999999999864
No 148
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.87 E-value=31 Score=24.10 Aligned_cols=12 Identities=42% Similarity=1.248 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q psy15061 92 PAGYKCPQCKTG 103 (226)
Q Consensus 92 pag~~CP~C~~~ 103 (226)
|..++||+|+.+
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 467999999753
No 149
>PF12773 DZR: Double zinc ribbon
Probab=30.65 E-value=63 Score=21.36 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCC
Q psy15061 94 GYKCPQCKTGLFPPN 108 (226)
Q Consensus 94 g~~CP~C~~~I~P~~ 108 (226)
...||.|...+-+..
T Consensus 29 ~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 29 KKICPNCGAENPPNA 43 (50)
T ss_pred CCCCcCCcCCCcCCc
Confidence 456888888765543
No 150
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=30.53 E-value=32 Score=34.00 Aligned_cols=8 Identities=25% Similarity=0.875 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q psy15061 95 YKCPQCKT 102 (226)
Q Consensus 95 ~~CP~C~~ 102 (226)
+.|+-|+-
T Consensus 87 l~C~~C~W 94 (483)
T PF05502_consen 87 LSCSYCRW 94 (483)
T ss_pred EECCCcee
Confidence 46888853
No 151
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.60 E-value=28 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=15.3
Q ss_pred CcCccccccccCCC--------cee-ecCCCccC
Q psy15061 51 PTCELCRKDLAAEN--------CIR-LTCYHVYH 75 (226)
Q Consensus 51 ~~C~IC~~~L~~gd--------~vR-L~C~HvFH 75 (226)
-.|+-|...|.-.+ .|| -.|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 35888888775432 344 35777774
No 152
>KOG4718|consensus
Probab=28.13 E-value=30 Score=31.51 Aligned_cols=45 Identities=31% Similarity=0.792 Sum_probs=34.5
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+|.+|..-+-.| +|- .|+=-+|..|+..++++.+ .||.|+- .||
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~--------~cphc~d-~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRD--------ICPHCGD-LWT 227 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccC--------cCCchhc-ccC
Confidence 6899998876443 453 6888899999999999854 5999953 444
No 153
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.72 E-value=30 Score=23.91 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCC
Q psy15061 92 PAGYKCPQCKTG 103 (226)
Q Consensus 92 pag~~CP~C~~~ 103 (226)
|..++||.|..+
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 457999999754
No 154
>KOG0825|consensus
Probab=26.18 E-value=19 Score=38.46 Aligned_cols=46 Identities=28% Similarity=0.759 Sum_probs=33.5
Q ss_pred CcCccccccccCCCceee--cCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL--TCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL--~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
..|.||.-. +..|++.| .|.-+ ||.-|||.=|-.-|.+ .+.|+-|.
T Consensus 216 ~~C~IC~~~-DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~----eWYC~NC~ 264 (1134)
T KOG0825|consen 216 VKCDICTVH-DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVN----EWYCTNCS 264 (1134)
T ss_pred ccceeeccC-ChHHhheeecccccceeeccccCccccccccc----ceecCcch
Confidence 789999766 33345445 79999 9999999966544432 47899994
No 155
>smart00336 BBOX B-Box-type zinc finger.
Probab=25.53 E-value=54 Score=20.36 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.1
Q ss_pred cccccceeeeccccccccccCCCCc
Q psy15061 10 KVTNQFCYEHRVNVCEYCMVTNHPK 34 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v~~H~~ 34 (226)
+.-.+||-.....+|..|....|..
T Consensus 12 ~~~~~~C~~c~~~iC~~C~~~~H~~ 36 (42)
T smart00336 12 EPAEFFCEECGALLCRTCDEAEHRG 36 (42)
T ss_pred CceEEECCCCCcccccccChhhcCC
Confidence 4457899999999999998667644
No 156
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=25.24 E-value=44 Score=22.29 Aligned_cols=12 Identities=42% Similarity=1.342 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q psy15061 92 PAGYKCPQCKTG 103 (226)
Q Consensus 92 pag~~CP~C~~~ 103 (226)
|.|+.||-|+..
T Consensus 16 ~~g~~CP~Cg~~ 27 (46)
T PF12760_consen 16 PDGFVCPHCGST 27 (46)
T ss_pred CCCCCCCCCCCe
Confidence 468999999864
No 157
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=24.98 E-value=71 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
...||.|...-.-.+ .++++..||+.+.
T Consensus 40 ~LrCp~Cq~qsi~~s--~a~~A~dmR~~I~ 67 (148)
T PF03918_consen 40 ELRCPVCQNQSIADS--NAPIARDMRREIR 67 (148)
T ss_dssp CCE-TTTTS-CTTT----SHHHHHHHHHHH
T ss_pred cccCCCCCCCchhhc--CcHHHHHHHHHHH
Confidence 367999976555334 5899999998874
No 158
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=23.33 E-value=26 Score=29.81 Aligned_cols=26 Identities=27% Similarity=0.844 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 74 YHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 74 FH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
||..||+.=|...|. +.-.||.|...
T Consensus 2 ~H~~CL~Ppl~~~P~----g~W~Cp~C~~~ 27 (148)
T cd04718 2 FHLCCLRPPLKEVPE----GDWICPFCEVE 27 (148)
T ss_pred cccccCCCCCCCCCC----CCcCCCCCcCC
Confidence 899999877765443 34889999753
No 159
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=23.16 E-value=16 Score=26.40 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCCCCCCCCCC-CCCCCChHHHHHHHHhhhhhhhhhhcCCCCC
Q psy15061 96 KCPQCKTGLFP-PNNLVSPVADVLREKLSSVNWARVGLGLPLL 137 (226)
Q Consensus 96 ~CP~C~~~I~P-~~n~~Spva~~Lre~laq~~War~glgl~l~ 137 (226)
.||+|++++.. +.|..-|.=++.-+.|---.|+..+...|--
T Consensus 4 ~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~ 46 (57)
T PF03884_consen 4 KCPICGKPVEWSPENPFRPFCSERCKLIDLGRWANEEYRIPGE 46 (57)
T ss_dssp E-TTT--EEE-SSSSS--SSSSHHHHHHHHS-SSSSS----SS
T ss_pred cCCCCCCeecccCCCCcCCcccHhhcccCHHHHhcCCcccCCC
Confidence 59999999887 5665666666666666666677766665543
No 160
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=23.01 E-value=56 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=19.8
Q ss_pred ccccceeeeccccccccccCCCCc
Q psy15061 11 VTNQFCYEHRVNVCEYCMVTNHPK 34 (226)
Q Consensus 11 ~T~~fCf~HrvnVCe~C~v~~H~~ 34 (226)
.-.+||-..++.+|..|....|..
T Consensus 10 ~~~~fC~~~~~~iC~~C~~~~H~~ 33 (39)
T cd00021 10 PLSLFCETDRALLCVDCDLSVHSG 33 (39)
T ss_pred ceEEEeCccChhhhhhcChhhcCC
Confidence 447899999999999998666753
No 161
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.83 E-value=76 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.742 Sum_probs=25.1
Q ss_pred CCCcCccccccccCCCcee---ecCCCccCHHHHHH
Q psy15061 49 YNPTCELCRKDLAAENCIR---LTCYHVYHWSCLNH 81 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR---L~C~HvFH~~CLd~ 81 (226)
+...|.+|... .|.+|. -.|.-.||..|...
T Consensus 35 ~~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 35899999976 577666 27999999999865
No 162
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.12 E-value=37 Score=23.84 Aligned_cols=38 Identities=29% Similarity=0.592 Sum_probs=18.0
Q ss_pred hhccCCCCCCcCccccccccCCCcee----ecCCCccCHHHHHHH
Q psy15061 42 QWLEDSDYNPTCELCRKDLAAENCIR----LTCYHVYHWSCLNHY 82 (226)
Q Consensus 42 qWL~DsDyd~~C~IC~~~L~~gd~vR----L~C~HvFH~~CLd~w 82 (226)
+|+.|+ ....|.+|...|.- ..| -.||++|=..|....
T Consensus 2 ~W~~d~-~~~~C~~C~~~F~~--~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 2 HWVPDS-EASNCMICGKKFSL--FRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SSSGG-G-SB-TTT--B-BS--SS-EEE-TTT--EEECCCS-EE
T ss_pred CcCCCC-CCCcCcCcCCcCCC--ceeeEccCCCCCEECCchhCCE
Confidence 577774 34789999999933 222 268888866665443
No 163
>KOG2462|consensus
Probab=21.92 E-value=68 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=21.3
Q ss_pred CCCccCHHHHHHHHHhCC--CCCCCCCCCCCCCCCCCCCCCC
Q psy15061 70 CYHVYHWSCLNHYARQLP--STTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 70 C~HvFH~~CLd~wl~~~p--~nTapag~~CP~C~~~I~P~~n 109 (226)
||=.|.. .||.+.. .+|-.--|.||.|++.+-=.+|
T Consensus 193 CGKaFSR----PWLLQGHiRTHTGEKPF~C~hC~kAFADRSN 230 (279)
T KOG2462|consen 193 CGKAFSR----PWLLQGHIRTHTGEKPFSCPHCGKAFADRSN 230 (279)
T ss_pred ccccccc----hHHhhcccccccCCCCccCCcccchhcchHH
Confidence 5555553 5766533 3444555999999886543333
No 164
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=21.61 E-value=1.1e+02 Score=23.70 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCcCccccccc---cCCCcee--ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDL---AAENCIR--LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L---~~gd~vR--L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.|.||.+.+ .+|++.. ..|+=-.-..|..-=.+.. .-.||.|+++.-
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg-------~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG-------NQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS--------SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC-------cccccccCCCcc
Confidence 47899999987 3566533 4788888889987666653 236999996553
No 165
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.42 E-value=46 Score=20.08 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=7.9
Q ss_pred CCCCCCCCC
Q psy15061 96 KCPQCKTGL 104 (226)
Q Consensus 96 ~CP~C~~~I 104 (226)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 599999887
Done!