Query psy15061
Match_columns 226
No_of_seqs 170 out of 858
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:28:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep4_A Ring finger protein 24; 99.4 8.5E-13 2.9E-17 93.4 5.7 57 47-111 12-69 (74)
2 2kiz_A E3 ubiquitin-protein li 99.3 2.5E-12 8.6E-17 89.9 6.0 53 48-108 12-65 (69)
3 1x4j_A Ring finger protein 38; 99.3 1E-12 3.6E-17 93.6 3.7 52 49-108 22-74 (75)
4 1v87_A Deltex protein 2; ring- 99.3 1E-12 3.5E-17 100.1 3.8 67 35-105 11-93 (114)
5 1iym_A EL5; ring-H2 finger, ub 99.3 2.6E-12 9E-17 85.9 3.7 49 49-105 4-54 (55)
6 2l0b_A E3 ubiquitin-protein li 99.3 3.3E-12 1.1E-16 94.9 4.6 51 49-107 39-90 (91)
7 2ecm_A Ring finger and CHY zin 99.2 4.8E-12 1.7E-16 84.5 4.3 49 49-105 4-54 (55)
8 2ect_A Ring finger protein 126 99.2 5.7E-12 2E-16 90.0 4.4 54 49-110 14-68 (78)
9 2ecl_A Ring-box protein 2; RNF 99.1 1.6E-11 5.4E-16 89.8 2.7 48 51-106 27-76 (81)
10 2d8s_A Cellular modulator of i 99.1 7.3E-11 2.5E-15 87.5 4.8 55 48-108 13-72 (80)
11 3lrq_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 89.4 4.2 67 50-125 22-89 (100)
12 2ea6_A Ring finger protein 4; 99.1 7.4E-11 2.5E-15 81.4 3.8 50 49-106 14-68 (69)
13 2ct2_A Tripartite motif protei 99.0 2.3E-10 7.9E-15 82.5 5.9 53 50-107 15-69 (88)
14 3ng2_A RNF4, snurf, ring finge 99.0 1.4E-10 4.6E-15 80.9 4.2 50 49-106 9-63 (71)
15 1t1h_A Gspef-atpub14, armadill 99.0 1.8E-10 6E-15 82.2 4.5 50 50-108 8-57 (78)
16 1chc_A Equine herpes virus-1 r 99.0 1.9E-10 6.4E-15 79.9 4.1 48 49-105 4-51 (68)
17 2ecn_A Ring finger protein 141 99.0 4.8E-11 1.6E-15 83.5 0.9 54 44-108 9-62 (70)
18 3dpl_R Ring-box protein 1; ubi 99.0 2E-10 6.8E-15 89.2 4.3 47 50-104 37-99 (106)
19 2ysl_A Tripartite motif-contai 99.0 3E-10 1E-14 79.7 4.7 52 49-107 19-70 (73)
20 2djb_A Polycomb group ring fin 99.0 5.9E-10 2E-14 78.8 6.2 49 49-107 14-63 (72)
21 2csy_A Zinc finger protein 183 99.0 1.8E-10 6.2E-15 83.0 3.0 46 50-105 15-60 (81)
22 2xeu_A Ring finger protein 4; 99.0 2.7E-10 9.2E-15 77.5 3.6 49 50-106 3-56 (64)
23 2y43_A E3 ubiquitin-protein li 99.0 4.4E-10 1.5E-14 83.8 4.6 66 50-125 22-88 (99)
24 3fl2_A E3 ubiquitin-protein li 99.0 9.4E-10 3.2E-14 85.2 6.6 51 50-109 52-102 (124)
25 2d8t_A Dactylidin, ring finger 99.0 2.2E-10 7.5E-15 80.8 2.6 47 50-106 15-61 (71)
26 2yur_A Retinoblastoma-binding 99.0 7.4E-10 2.5E-14 79.0 5.2 53 49-109 14-67 (74)
27 2ecy_A TNF receptor-associated 98.9 7.4E-10 2.5E-14 76.9 4.8 49 50-107 15-63 (66)
28 1jm7_A BRCA1, breast cancer ty 98.9 1.1E-09 3.6E-14 82.5 4.8 67 50-123 21-91 (112)
29 2ysj_A Tripartite motif-contai 98.9 1.8E-09 6.1E-14 74.2 5.4 45 49-100 19-63 (63)
30 3ztg_A E3 ubiquitin-protein li 98.9 2.9E-09 1E-13 78.0 6.8 67 50-124 13-81 (92)
31 2ecw_A Tripartite motif-contai 98.9 3.2E-09 1.1E-13 75.5 6.8 55 49-107 18-72 (85)
32 2ckl_B Ubiquitin ligase protei 98.9 1.3E-09 4.6E-14 88.2 4.7 65 51-124 55-121 (165)
33 1g25_A CDK-activating kinase a 98.9 1.7E-09 6E-14 74.8 4.3 50 50-106 3-55 (65)
34 2ecj_A Tripartite motif-contai 98.8 2.6E-09 8.8E-14 71.6 4.6 45 49-100 14-58 (58)
35 2ckl_A Polycomb group ring fin 98.8 2.9E-09 1E-13 80.6 5.0 48 50-107 15-63 (108)
36 2ecv_A Tripartite motif-contai 98.8 1.6E-09 5.3E-14 77.1 3.1 55 49-107 18-72 (85)
37 4ayc_A E3 ubiquitin-protein li 98.8 1.7E-09 5.8E-14 85.7 3.3 46 51-106 54-99 (138)
38 4a0k_B E3 ubiquitin-protein li 98.8 4.9E-10 1.7E-14 88.9 0.1 47 50-104 48-110 (117)
39 1z6u_A NP95-like ring finger p 98.8 5.8E-09 2E-13 84.6 6.4 63 50-121 78-141 (150)
40 3hct_A TNF receptor-associated 98.8 2.1E-09 7.1E-14 82.9 3.4 55 50-113 18-72 (118)
41 2egp_A Tripartite motif-contai 98.8 2E-09 6.8E-14 76.3 2.1 54 50-106 12-65 (79)
42 4ap4_A E3 ubiquitin ligase RNF 98.8 5.2E-09 1.8E-13 79.8 4.5 50 49-106 71-125 (133)
43 4ap4_A E3 ubiquitin ligase RNF 98.7 3.7E-09 1.3E-13 80.6 3.1 49 50-106 7-60 (133)
44 1rmd_A RAG1; V(D)J recombinati 98.7 6E-09 2.1E-13 79.6 4.1 49 50-107 23-71 (116)
45 3l11_A E3 ubiquitin-protein li 98.7 3.7E-09 1.3E-13 80.7 2.7 47 50-105 15-61 (115)
46 1jm7_B BARD1, BRCA1-associated 98.6 1.2E-08 4.2E-13 78.5 3.5 63 50-124 22-85 (117)
47 1e4u_A Transcriptional repress 98.6 2.8E-08 9.4E-13 73.0 5.1 52 49-107 10-63 (78)
48 2ct0_A Non-SMC element 1 homol 98.6 1.9E-08 6.5E-13 74.0 3.9 48 50-104 15-62 (74)
49 3hcs_A TNF receptor-associated 98.5 7.3E-08 2.5E-12 78.1 3.2 50 49-107 17-66 (170)
50 1bor_A Transcription factor PM 98.4 6.4E-08 2.2E-12 65.9 2.3 47 50-109 6-52 (56)
51 3knv_A TNF receptor-associated 98.4 5.3E-08 1.8E-12 78.3 0.3 49 50-107 31-79 (141)
52 2c2l_A CHIP, carboxy terminus 98.4 2E-07 6.7E-12 79.0 3.7 70 50-128 208-278 (281)
53 2y1n_A E3 ubiquitin-protein li 98.3 3.4E-07 1.1E-11 85.6 5.0 48 50-106 332-379 (389)
54 2kr4_A Ubiquitin conjugation f 98.3 7.6E-07 2.6E-11 65.6 5.8 48 50-107 14-61 (85)
55 2kre_A Ubiquitin conjugation f 98.3 5E-07 1.7E-11 68.9 4.3 48 50-107 29-76 (100)
56 2yu4_A E3 SUMO-protein ligase 98.2 8.1E-07 2.8E-11 66.4 4.4 50 50-103 7-59 (94)
57 1vyx_A ORF K3, K3RING; zinc-bi 98.2 7.2E-07 2.5E-11 62.6 3.7 48 49-104 5-57 (60)
58 3k1l_B Fancl; UBC, ring, RWD, 98.2 2.3E-07 8E-12 86.3 1.2 59 47-105 305-372 (381)
59 1wgm_A Ubiquitin conjugation f 98.2 1.6E-06 5.4E-11 65.9 5.5 48 50-107 22-70 (98)
60 4ic3_A E3 ubiquitin-protein li 98.2 5.5E-07 1.9E-11 64.4 2.6 42 50-105 24-66 (74)
61 2vje_A E3 ubiquitin-protein li 98.2 8.5E-07 2.9E-11 62.1 2.8 46 50-105 8-56 (64)
62 1wim_A KIAA0161 protein; ring 98.1 2E-07 6.9E-12 69.0 -1.2 54 50-103 5-61 (94)
63 2vje_B MDM4 protein; proto-onc 98.1 9.2E-07 3.1E-11 61.8 2.1 49 49-105 6-55 (63)
64 2f42_A STIP1 homology and U-bo 98.0 3.2E-06 1.1E-10 71.3 4.3 70 50-128 106-176 (179)
65 2ecg_A Baculoviral IAP repeat- 98.0 2.6E-06 8.8E-11 60.8 2.2 43 50-106 25-68 (75)
66 2ea5_A Cell growth regulator w 97.6 6.1E-05 2.1E-09 53.4 4.2 43 50-106 15-58 (68)
67 2yho_A E3 ubiquitin-protein li 97.4 3.4E-05 1.1E-09 56.2 1.4 42 50-105 18-60 (79)
68 3t6p_A Baculoviral IAP repeat- 97.4 3.7E-05 1.3E-09 70.4 1.1 42 50-105 295-337 (345)
69 3htk_C E3 SUMO-protein ligase 97.4 6.2E-05 2.1E-09 67.4 2.5 49 50-106 181-232 (267)
70 2bay_A PRE-mRNA splicing facto 97.0 0.00031 1.1E-08 49.1 2.7 46 51-106 4-50 (61)
71 3nw0_A Non-structural maintena 97.0 0.00056 1.9E-08 59.5 4.5 51 49-108 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 96.2 0.0038 1.3E-07 48.7 3.7 45 52-105 3-48 (101)
73 2lri_C Autoimmune regulator; Z 95.4 0.015 5E-07 41.5 3.9 52 49-107 11-63 (66)
74 1f62_A Transcription factor WS 92.1 0.082 2.8E-06 34.9 2.3 47 52-102 2-49 (51)
75 2l5u_A Chromodomain-helicase-D 88.8 0.14 4.6E-06 35.5 1.2 47 49-102 10-57 (61)
76 1mm2_A MI2-beta; PHD, zinc fin 88.2 0.11 3.8E-06 36.0 0.4 49 49-104 8-57 (61)
77 3v43_A Histone acetyltransfera 87.6 0.085 2.9E-06 40.4 -0.5 76 23-102 28-111 (112)
78 2lv9_A Histone-lysine N-methyl 86.8 0.84 2.9E-05 34.3 4.6 46 51-102 29-75 (98)
79 1wil_A KIAA1045 protein; ring 86.4 0.82 2.8E-05 34.8 4.3 50 50-101 15-74 (89)
80 2lbm_A Transcriptional regulat 84.6 0.36 1.2E-05 39.3 1.7 47 49-102 62-116 (142)
81 4bbq_A Lysine-specific demethy 84.2 0.083 2.8E-06 40.2 -2.2 54 49-102 58-113 (117)
82 2ysm_A Myeloid/lymphoid or mix 84.2 0.16 5.5E-06 38.5 -0.5 80 22-106 23-107 (111)
83 2e6s_A E3 ubiquitin-protein li 83.8 0.33 1.1E-05 35.3 1.1 46 52-102 28-76 (77)
84 2ysm_A Myeloid/lymphoid or mix 82.9 0.29 9.8E-06 37.0 0.4 49 49-101 6-55 (111)
85 1wyh_A SLIM 2, skeletal muscle 82.2 0.92 3.1E-05 30.8 2.8 43 48-106 3-45 (72)
86 2yql_A PHD finger protein 21A; 81.8 0.095 3.2E-06 35.5 -2.4 47 49-102 8-55 (56)
87 3v43_A Histone acetyltransfera 81.1 1.5 5.1E-05 33.4 3.9 48 50-101 5-62 (112)
88 3o36_A Transcription intermedi 80.3 0.49 1.7E-05 38.6 1.0 50 50-106 4-54 (184)
89 3u5n_A E3 ubiquitin-protein li 80.3 0.34 1.2E-05 40.5 -0.0 51 49-106 6-57 (207)
90 1we9_A PHD finger family prote 80.2 0.6 2.1E-05 32.0 1.3 52 48-102 4-57 (64)
91 3lqh_A Histone-lysine N-methyl 80.0 0.27 9.1E-06 41.3 -0.8 51 51-104 3-64 (183)
92 1fp0_A KAP-1 corepressor; PHD 79.5 0.84 2.9E-05 34.4 1.9 46 50-102 25-71 (88)
93 2puy_A PHD finger protein 21A; 78.4 0.2 6.8E-06 34.3 -1.7 46 50-102 5-51 (60)
94 2k16_A Transcription initiatio 78.4 0.62 2.1E-05 32.9 0.9 49 50-104 18-69 (75)
95 1xwh_A Autoimmune regulator; P 78.0 0.21 7.3E-06 34.9 -1.6 48 49-103 7-55 (66)
96 1wew_A DNA-binding family prot 75.5 1.9 6.4E-05 30.9 2.8 56 49-107 15-76 (78)
97 1x4k_A Skeletal muscle LIM-pro 75.4 1.4 4.7E-05 29.8 1.9 42 49-106 4-45 (72)
98 1weu_A Inhibitor of growth fam 75.2 1.6 5.5E-05 32.9 2.4 48 50-105 36-87 (91)
99 1iml_A CRIP, cysteine rich int 74.9 0.88 3E-05 31.4 0.8 13 51-63 28-40 (76)
100 1g47_A Pinch protein; LIM doma 74.6 2.1 7.2E-05 29.3 2.8 46 45-106 6-51 (77)
101 2kwj_A Zinc finger protein DPF 74.4 0.22 7.7E-06 38.2 -2.6 76 22-101 24-106 (114)
102 3asl_A E3 ubiquitin-protein li 74.2 0.51 1.7E-05 33.6 -0.5 47 52-102 20-68 (70)
103 1wen_A Inhibitor of growth fam 74.1 1.3 4.3E-05 31.7 1.5 46 50-103 16-65 (71)
104 1x63_A Skeletal muscle LIM-pro 73.7 2.2 7.6E-05 29.6 2.7 42 49-106 14-55 (82)
105 2cu8_A Cysteine-rich protein 2 72.8 1.7 5.9E-05 29.9 2.0 41 49-106 8-48 (76)
106 2rsd_A E3 SUMO-protein ligase 72.6 0.18 6.2E-06 35.5 -3.2 52 49-101 9-63 (68)
107 1x61_A Thyroid receptor intera 72.6 2.7 9.1E-05 28.4 2.9 30 49-78 4-33 (72)
108 2ro1_A Transcription intermedi 72.2 0.73 2.5E-05 38.3 -0.1 46 51-103 3-49 (189)
109 2cs3_A Protein C14ORF4, MY039 72.1 3.7 0.00013 31.1 3.7 53 50-102 15-72 (93)
110 3shb_A E3 ubiquitin-protein li 71.4 0.63 2.1E-05 33.9 -0.6 47 52-102 28-76 (77)
111 3o70_A PHD finger protein 13; 71.2 1.3 4.3E-05 31.4 0.9 46 51-102 20-66 (68)
112 1x4l_A Skeletal muscle LIM-pro 70.4 3.3 0.00011 28.1 2.9 41 49-105 4-46 (72)
113 3ql9_A Transcriptional regulat 69.6 5.3 0.00018 31.9 4.4 52 45-101 51-109 (129)
114 3f6q_B LIM and senescent cell 66.0 2.9 0.0001 27.8 1.9 42 49-106 10-51 (72)
115 1x68_A FHL5 protein; four-and- 66.0 3.2 0.00011 28.6 2.1 41 49-105 4-46 (76)
116 1x6a_A LIMK-2, LIM domain kina 66.0 3.5 0.00012 28.6 2.4 39 49-105 14-52 (81)
117 2jun_A Midline-1; B-BOX, TRIM, 64.9 4.4 0.00015 29.3 2.8 33 50-82 3-36 (101)
118 1nyp_A Pinch protein; LIM doma 63.3 2.8 9.6E-05 27.9 1.4 39 49-105 4-42 (66)
119 1m3v_A FLIN4, fusion of the LI 62.5 8.2 0.00028 29.1 4.1 48 51-106 33-81 (122)
120 2dj7_A Actin-binding LIM prote 62.4 4 0.00014 28.8 2.1 39 50-105 15-53 (80)
121 3mjh_B Early endosome antigen 61.7 1.1 3.9E-05 28.3 -0.8 14 92-105 3-16 (34)
122 2g6q_A Inhibitor of growth pro 61.1 0.64 2.2E-05 32.4 -2.3 49 46-102 7-59 (62)
123 2yt5_A Metal-response element- 60.9 2.8 9.6E-05 28.6 1.0 52 47-102 3-60 (66)
124 2l3k_A Rhombotin-2, linker, LI 60.7 5.3 0.00018 30.2 2.7 39 52-106 10-48 (123)
125 1wig_A KIAA1808 protein; LIM d 60.5 9.6 0.00033 26.1 3.8 40 49-106 4-43 (73)
126 3i2d_A E3 SUMO-protein ligase 60.5 4.9 0.00017 37.3 2.9 56 51-114 250-308 (371)
127 3ask_A E3 ubiquitin-protein li 59.9 2.5 8.4E-05 36.8 0.8 46 52-102 176-224 (226)
128 2dar_A PDZ and LIM domain prot 59.3 5.5 0.00019 28.3 2.5 40 48-105 23-62 (90)
129 1v6g_A Actin binding LIM prote 58.9 5.8 0.0002 27.5 2.5 40 49-106 14-53 (81)
130 2d8x_A Protein pinch; LIM doma 58.7 6.1 0.00021 26.5 2.5 28 49-78 4-31 (70)
131 2ehe_A Four and A half LIM dom 58.4 5.9 0.0002 27.4 2.4 40 49-105 14-54 (82)
132 2cup_A Skeletal muscle LIM-pro 58.1 4.2 0.00014 29.1 1.7 31 49-79 65-95 (101)
133 2vnf_A ING 4, P29ING4, inhibit 57.9 0.73 2.5E-05 31.8 -2.4 46 49-102 9-58 (60)
134 2egq_A FHL1 protein; LIM domai 56.1 5 0.00017 27.4 1.7 41 49-105 14-57 (77)
135 2cor_A Pinch protein; LIM doma 55.5 8 0.00027 26.9 2.7 39 49-105 14-52 (79)
136 2d8z_A Four and A half LIM dom 55.4 4.5 0.00015 27.1 1.3 39 49-105 4-42 (70)
137 2cur_A Skeletal muscle LIM-pro 55.0 6.7 0.00023 26.2 2.2 39 49-105 4-42 (69)
138 4fo9_A E3 SUMO-protein ligase 54.8 8.1 0.00028 35.7 3.3 56 51-114 216-274 (360)
139 3c6w_A P28ING5, inhibitor of g 53.9 0.99 3.4E-05 31.1 -2.2 49 46-102 5-57 (59)
140 1wep_A PHF8; structural genomi 53.9 9.6 0.00033 27.1 3.0 52 51-106 13-66 (79)
141 1zfo_A LAsp-1; LIM domain, zin 53.5 3.8 0.00013 24.6 0.6 30 49-79 2-31 (31)
142 2co8_A NEDD9 interacting prote 53.2 6.2 0.00021 27.7 1.8 40 50-106 15-54 (82)
143 2rgt_A Fusion of LIM/homeobox 52.1 5.3 0.00018 31.7 1.5 41 50-106 65-105 (169)
144 2jtn_A LIM domain-binding prot 51.8 7.5 0.00026 31.2 2.3 42 49-106 118-159 (182)
145 3o7a_A PHD finger protein 13 v 51.8 2.8 9.5E-05 27.7 -0.2 49 49-102 2-51 (52)
146 4gne_A Histone-lysine N-methyl 50.9 5 0.00017 30.9 1.1 43 50-101 15-60 (107)
147 2e6r_A Jumonji/ARID domain-con 50.2 0.96 3.3E-05 33.7 -3.0 48 50-101 16-64 (92)
148 2kw0_A CCMH protein; oxidoredu 48.9 16 0.00054 27.6 3.6 28 94-123 23-50 (90)
149 2d8y_A Eplin protein; LIM doma 47.7 8.4 0.00029 27.4 1.8 40 50-106 15-54 (91)
150 6rxn_A Rubredoxin; electron tr 46.8 5 0.00017 26.7 0.4 13 91-103 27-39 (46)
151 1fre_A Nuclear factor XNF7; zi 46.7 10 0.00034 23.3 1.8 24 10-33 11-35 (42)
152 2ku3_A Bromodomain-containing 46.7 15 0.00051 26.0 3.0 47 49-101 15-64 (71)
153 2iyb_E Testin, TESS, TES; LIM 46.4 5 0.00017 26.8 0.4 39 50-105 2-43 (65)
154 2kwj_A Zinc finger protein DPF 45.1 5.6 0.00019 30.2 0.5 33 50-82 1-41 (114)
155 2ri7_A Nucleosome-remodeling f 44.0 3.8 0.00013 32.7 -0.6 50 49-102 7-58 (174)
156 2xqn_T Testin, TESS; metal-bin 43.8 9.1 0.00031 28.5 1.6 41 49-105 62-104 (126)
157 1weo_A Cellulose synthase, cat 43.0 43 0.0015 25.5 5.2 49 50-105 16-69 (93)
158 2l4z_A DNA endonuclease RBBP8, 42.4 9.6 0.00033 29.1 1.5 40 49-105 60-99 (123)
159 3kqi_A GRC5, PHD finger protei 41.4 11 0.00036 26.6 1.5 48 51-103 10-61 (75)
160 2kgg_A Histone demethylase jar 41.0 3.3 0.00011 27.4 -1.2 46 52-101 4-52 (52)
161 2vpb_A Hpygo1, pygopus homolog 41.0 15 0.00051 25.6 2.2 51 47-101 5-64 (65)
162 2cuq_A Four and A half LIM dom 41.0 17 0.00058 24.8 2.5 38 49-104 14-51 (80)
163 2xqn_T Testin, TESS; metal-bin 40.4 16 0.00056 27.1 2.5 47 51-108 31-77 (126)
164 2xjy_A Rhombotin-2; oncoprotei 40.1 8.2 0.00028 28.9 0.8 39 52-106 68-106 (131)
165 1x64_A Alpha-actinin-2 associa 39.9 23 0.0008 24.8 3.2 40 49-106 24-63 (89)
166 2ko5_A Ring finger protein Z; 39.8 7.2 0.00025 30.1 0.4 44 50-105 28-72 (99)
167 1wev_A Riken cDNA 1110020M19; 39.5 2.4 8.2E-05 31.2 -2.3 48 50-101 16-70 (88)
168 1x62_A C-terminal LIM domain p 38.5 16 0.00055 25.1 2.1 37 50-104 15-51 (79)
169 2dlo_A Thyroid receptor-intera 38.0 14 0.00047 25.5 1.6 39 49-105 14-52 (81)
170 1x3h_A Leupaxin; paxillin fami 37.8 16 0.00054 24.9 1.9 39 50-106 15-53 (80)
171 1rut_X Flinc4, fusion protein 37.1 12 0.0004 30.2 1.3 39 52-106 71-109 (188)
172 2hl7_A Cytochrome C-type bioge 37.1 24 0.00084 26.1 2.9 27 95-123 27-53 (84)
173 1wee_A PHD finger family prote 37.1 3.4 0.00012 29.0 -1.7 52 50-106 16-69 (72)
174 2yvr_A Transcription intermedi 36.3 6.9 0.00024 25.0 -0.2 27 10-36 15-41 (50)
175 2l43_A N-teminal domain from h 36.0 22 0.00074 26.0 2.5 49 49-103 24-75 (88)
176 2jmi_A Protein YNG1, ING1 homo 34.9 5.8 0.0002 29.7 -0.8 44 50-101 26-74 (90)
177 4ayb_P DNA-directed RNA polyme 34.4 24 0.00082 23.9 2.3 13 94-106 23-35 (48)
178 1j2o_A FLIN2, fusion of rhombo 32.5 22 0.00074 26.3 2.1 34 51-84 31-65 (114)
179 2csv_A Tripartite motif protei 32.2 15 0.00051 25.2 1.0 29 10-38 26-54 (72)
180 2yrg_A Tripartite motif-contai 30.9 12 0.00042 25.0 0.4 26 10-35 22-48 (59)
181 1x4i_A Inhibitor of growth pro 30.3 16 0.00055 25.7 0.9 43 51-101 7-53 (70)
182 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.7 29 0.001 25.3 2.4 34 69-105 7-46 (140)
183 1a7i_A QCRP2 (LIM1); LIM domai 29.1 8.8 0.0003 26.5 -0.6 28 50-78 7-34 (81)
184 2jvx_A NF-kappa-B essential mo 28.7 16 0.00053 22.1 0.5 11 93-103 2-12 (28)
185 3ddt_A E3 ubiquitin-protein li 26.2 22 0.00074 22.5 0.9 27 10-36 15-42 (48)
186 2did_A Tripartite motif protei 24.6 23 0.00079 22.7 0.9 28 10-37 16-44 (53)
187 1b8t_A Protein (CRP1); LIM dom 23.6 22 0.00077 28.5 0.8 39 51-106 116-154 (192)
188 1r79_A Diacylglycerol kinase, 23.3 83 0.0028 23.0 3.8 43 40-82 27-74 (84)
189 1x4u_A Zinc finger, FYVE domai 23.2 31 0.001 24.7 1.3 39 41-82 6-48 (84)
190 1l8d_A DNA double-strand break 22.7 15 0.00053 27.1 -0.4 13 94-106 47-59 (112)
191 2pv0_B DNA (cytosine-5)-methyl 22.5 41 0.0014 31.3 2.4 56 44-102 86-147 (386)
192 2v3b_B Rubredoxin 2, rubredoxi 21.8 41 0.0014 22.8 1.7 13 91-103 33-45 (55)
193 4rxn_A Rubredoxin; electron tr 21.2 35 0.0012 23.2 1.3 12 92-103 34-45 (54)
194 2xb1_A Pygopus homolog 2, B-ce 21.1 32 0.0011 25.9 1.1 55 51-106 4-64 (105)
195 1e8j_A Rubredoxin; iron-sulfur 20.8 42 0.0014 22.5 1.6 13 91-103 33-45 (52)
196 1wem_A Death associated transc 20.2 56 0.0019 22.7 2.2 55 51-106 17-73 (76)
197 2dja_A Midline-2; tripartite m 20.2 24 0.00082 24.6 0.2 29 10-38 27-56 (84)
198 1yk4_A Rubredoxin, RD; electro 20.2 40 0.0014 22.6 1.3 13 91-103 32-44 (52)
No 1
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.5e-13 Score=93.44 Aligned_cols=57 Identities=21% Similarity=0.522 Sum_probs=47.1
Q ss_pred CCCCCcCccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 47 SDYNPTCELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLV 111 (226)
Q Consensus 47 sDyd~~C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~ 111 (226)
.+.+..|+||++.|.+++. +.|+|+|+||..||.+|++... +||+|+++|.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~--------~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--------VCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS--------BCTTTCCBCSSCCSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC--------cCCCcCcccccccccC
Confidence 3456899999999988765 4579999999999999998742 6999999998765543
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=89.89 Aligned_cols=53 Identities=26% Similarity=0.647 Sum_probs=44.2
Q ss_pred CCCCcCccccccccCCC-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAEN-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
+.+..|+||++.|..++ ++.|+|||+||..||.+|++.. .+||+|+.+|....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcCcCccccCcC
Confidence 45688999999998876 4568999999999999999873 35999999887543
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=93.60 Aligned_cols=52 Identities=23% Similarity=0.640 Sum_probs=44.5
Q ss_pred CCCcCccccccccCCCce-eecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCI-RLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~v-RL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
.+..|+||++.|..++.+ .|+|+|+||..||..|++.. .+||+|+++|.|.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPICRADSGPSS 74 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTTTCCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcCcCCcCCCCC
Confidence 457899999999988765 48999999999999999874 36999999988753
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1e-12 Score=100.08 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=49.6
Q ss_pred ceeeeehhhccCCCCCCcCccccccccCCC---------------ce-eecCCCccCHHHHHHHHHhCCCCCCCCCCCCC
Q psy15061 35 CIVQSYLQWLEDSDYNPTCELCRKDLAAEN---------------CI-RLTCYHVYHWSCLNHYARQLPSTTAPAGYKCP 98 (226)
Q Consensus 35 CvVqSYlqWL~DsDyd~~C~IC~~~L~~gd---------------~v-RL~C~HvFH~~CLd~wl~~~p~nTapag~~CP 98 (226)
=+++.|++.+.+. .+..|+||++.|.+++ ++ .++|+|+||.+||+.|+..... ....+||
T Consensus 11 ~~i~~~~~~~~~~-~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP 86 (114)
T 1v87_A 11 QVIRKYTEELKVA-PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCP 86 (114)
T ss_dssp HHHHHHEEECSSC-CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCT
T ss_pred HHHHHHHHhccCC-CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCC
Confidence 3567788877664 3468999999997643 33 3689999999999999975321 1245799
Q ss_pred CCCCCCC
Q psy15061 99 QCKTGLF 105 (226)
Q Consensus 99 ~C~~~I~ 105 (226)
+|++.+.
T Consensus 87 ~CR~~~~ 93 (114)
T 1v87_A 87 SCKTIYG 93 (114)
T ss_dssp TTCCBSS
T ss_pred CCCCccC
Confidence 9998764
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.26 E-value=2.6e-12 Score=85.95 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCCc-eeec-CCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENC-IRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~-vRL~-C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+..|+||++.|.+++. +.|+ |||+||.+||.+|++.. .+||+|+++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--------~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--------STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--------CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC--------CcCcCCCCEeE
Confidence 35789999999998874 5676 99999999999999763 36999999874
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=94.93 Aligned_cols=51 Identities=24% Similarity=0.669 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCce-eecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCI-RLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~v-RL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.+..|+||++.|..++.+ .|+|+|+||..||+.|++.. .+||+|+.+|.++
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS--------GTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT--------CBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC--------CcCcCcCccCCCC
Confidence 457899999999988854 58999999999999999753 3699999998763
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.24 E-value=4.8e-12 Score=84.46 Aligned_cols=49 Identities=24% Similarity=0.635 Sum_probs=41.1
Q ss_pred CCCcCccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+..|+||++.|.+++ ++.++|+|+||..||.+|++.. .+||+|+++|-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCCCCCcCC
Confidence 4578999999997654 5568999999999999999974 46999998763
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=5.7e-12 Score=89.98 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=44.8
Q ss_pred CCCcCccccccccCCCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~ 110 (226)
.+..|+||++.|.+++. +.|+|+|+||..||.+|++.. .+||+|+++|......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--------DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--------CSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--------CcCcCcCCccCCcccC
Confidence 35799999999988765 458999999999999999753 3699999998765443
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=89.80 Aligned_cols=48 Identities=23% Similarity=0.669 Sum_probs=33.8
Q ss_pred CcCccccccccCCC-ceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN-CIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd-~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..|+||++++..++ ++.| .|+|+||.+||++|++.. .+||+|++++..
T Consensus 27 ~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPLCQQDWVV 76 (81)
T ss_dssp SCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTTTCCBCCE
T ss_pred ccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCCcCCCcch
Confidence 33444444444455 4556 499999999999999874 269999998753
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.3e-11 Score=87.45 Aligned_cols=55 Identities=20% Similarity=0.462 Sum_probs=45.5
Q ss_pred CCCCcCccccccccCCCceeecCC-----CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIRLTCY-----HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vRL~C~-----HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
+.+..|.||++++++++.+.++|. |.||.+||++|+.... ..+||+|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD------TRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC------CCCCCCCCCeeecCc
Confidence 356889999999988887789996 9999999999999743 246999999886543
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=6.2e-11 Score=89.44 Aligned_cols=67 Identities=18% Similarity=0.429 Sum_probs=53.7
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhhh
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSSV 125 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq~ 125 (226)
+-.|+||++.|.+ .+. +.|||+||..||..|+.... ..||+|+.++.+..-...++.+.+.+.+...
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQR-------AQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTC-------SBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCc-------CCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4689999999964 777 89999999999999999742 4699999999775555666777777776544
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.4e-11 Score=81.42 Aligned_cols=50 Identities=20% Similarity=0.547 Sum_probs=41.0
Q ss_pred CCCcCccccccccCC----C-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAE----N-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~g----d-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+..|+||++.+.+. . .+.++|||+||..||..|++.. ..||+|+++|-+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--------CCCCCCCCccCc
Confidence 357899999999763 2 2668999999999999999873 369999998753
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=82.54 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=44.5
Q ss_pred CCcCccccccccCCC--ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN--CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd--~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
...|+||++.|.+++ .+.|+|||+||..||..|++... ....||.|++++...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCCCCCcccch
Confidence 578999999998876 67789999999999999999742 246899999987653
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=1.4e-10 Score=80.87 Aligned_cols=50 Identities=20% Similarity=0.557 Sum_probs=41.4
Q ss_pred CCCcCccccccccC----CCc-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA----ENC-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~----gd~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-+..|+||++.+.+ ++. +.++|||+||..||.+|++.. .+||+|++++.+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCCCCCccCh
Confidence 35789999999865 233 568999999999999999874 369999998875
No 15
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=1.8e-10 Score=82.18 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
+-.|+||++.|.+ .+.++|||+|+..||..|++.. ..+||+|++++....
T Consensus 8 ~~~C~IC~~~~~~--Pv~~~CgH~fc~~Ci~~~~~~~-------~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 8 YFRCPISLELMKD--PVIVSTGQTYERSSIQKWLDAG-------HKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSCTTTSCCCSS--EEEETTTEEEEHHHHHHHHTTT-------CCBCTTTCCBCSSCC
T ss_pred cCCCCCccccccC--CEEcCCCCeecHHHHHHHHHHC-------cCCCCCCcCCCChhh
Confidence 4689999999864 7889999999999999999752 357999999987543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.9e-10 Score=79.88 Aligned_cols=48 Identities=27% Similarity=0.717 Sum_probs=40.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+..|+||++.+.+ .++.++|||+||..||..|++.. .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQN--------PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHHS--------CSTTTTCCCCC
T ss_pred CCCCCeeCCccccC-CcEecCCCCeeHHHHHHHHHhCc--------CcCcCCChhhH
Confidence 46789999999854 24678999999999999999863 36999999875
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.8e-11 Score=83.53 Aligned_cols=54 Identities=20% Similarity=0.582 Sum_probs=43.8
Q ss_pred ccCCCCCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 44 LEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 44 L~DsDyd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
+.+.+-+..|+||++.+.+ +.|+|||+||..||..|++. ...||+|+++|....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDR--------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCC--------CSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHC--------cCcCCCcCCcccCCC
Confidence 3343446889999999876 78999999999999999884 246999999887643
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.01 E-value=2e-10 Score=89.15 Aligned_cols=47 Identities=19% Similarity=0.584 Sum_probs=37.0
Q ss_pred CCcCccccccccCC-------------C---ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE-------------N---CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~g-------------d---~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+..|+||++.|.+. + ++.|+|+|+||..||+.||+.. .+||+|++++
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--------SBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--------CcCcCCCCcc
Confidence 46788888888643 1 3447999999999999999863 3699999874
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3e-10 Score=79.68 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=42.4
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.+..|+||++.+.+ .+.|+|||+||..||..|++... ....||+|+++|...
T Consensus 19 ~~~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQK--PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSS--EEECTTCCEEEHHHHHHHCSSSC-----SCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCC--eEEcCCCChhhHHHHHHHHHcCC-----CCCCCCCCCCcCCcc
Confidence 45789999999864 77889999999999999997321 245799999988653
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.9e-10 Score=78.78 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=41.2
Q ss_pred CCCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.+..|+||++.|.+ .+.| +|||+||..||..|++.. .+||+|+++|...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYS--------NRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHC--------SSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcC--------CcCCCcCcccCcc
Confidence 35789999999865 6676 999999999999999862 3699999988753
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-10 Score=83.01 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=39.9
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
...|+||++.|.+ .+.++|||+||..||..|++.. ..||+|++++.
T Consensus 15 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN--PVVTKCRHYFCESCALEHFRAT--------PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS--EEECTTSCEEEHHHHHHHHHHC--------SBCSSSCCBCC
T ss_pred CCCCcCCCchhcC--eeEccCCCHhHHHHHHHHHHCC--------CcCCCcCcccc
Confidence 4689999999855 6779999999999999999862 46999999985
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=77.49 Aligned_cols=49 Identities=20% Similarity=0.567 Sum_probs=40.4
Q ss_pred CCcCccccccccCC----C-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE----N-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~g----d-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++.+.+. + .+.++|||+||.+||.+|++.. .+||+|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--------SBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--------CCCCCCCccCCc
Confidence 45799999999752 3 3568999999999999999873 369999998865
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.96 E-value=4.4e-10 Score=83.78 Aligned_cols=66 Identities=20% Similarity=0.444 Sum_probs=50.5
Q ss_pred CCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhhh
Q psy15061 50 NPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSSV 125 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq~ 125 (226)
+..|+||++.|.+ .+.+ +|||.||..||..|+.. +..||.|+.++....-......+.+.+.+.+.
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSY--------KTQCPTCCVTVTEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTT--------CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHC--------CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence 4689999999865 6676 89999999999999985 24799999998764434455566666655543
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.96 E-value=9.4e-10 Score=85.22 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=42.7
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
+-.|+||++.|. +.+.++|||.|+..||..|+.. ..+.||+|++++.+...
T Consensus 52 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~~~~ 102 (124)
T 3fl2_A 52 TFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA-------QVFSCPACRYDLGRSYA 102 (124)
T ss_dssp HTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTTTCCBCCTTCC
T ss_pred CCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH-------CcCCCCCCCccCCCCCC
Confidence 367999999987 4788899999999999999984 24579999999987433
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=80.82 Aligned_cols=47 Identities=21% Similarity=0.592 Sum_probs=40.1
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++.+.+ .+.|+|||+||..||..|+... ..||+|+.+|..
T Consensus 15 ~~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVH--PVSLPCKHVFCYLCVKGASWLG--------KRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSS--EEEETTTEEEEHHHHHHCTTCS--------SBCSSSCCBCCH
T ss_pred CCCCccCCcccCC--CEEccCCCHHHHHHHHHHHHCC--------CcCcCcCchhCH
Confidence 4789999999854 6889999999999999999753 469999998753
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.95 E-value=7.4e-10 Score=78.97 Aligned_cols=53 Identities=17% Similarity=0.479 Sum_probs=43.1
Q ss_pred CCCcCccccccccCCCceeec-CCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~-C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
.+..|+||++.|.+ .+.|+ |||+||..||..|++... ...||+|++++..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 14 DELLCLICKDIMTD--AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGGSCSSSCCCCTT--CEECSSSCCEECTTHHHHHHHHSS------SSCCSSSCCSSCCTTT
T ss_pred CCCCCcCCChHHhC--CeEcCCCCCHHHHHHHHHHHHhcC------CCcCCCCCCcCCCccc
Confidence 35789999999864 67898 999999999999998732 2579999998765443
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.4e-10 Score=76.91 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=40.4
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+..|+||++.+.+ .+.++|||+||..||..|++.. ...||+|+++|...
T Consensus 15 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCS--PKQTECGHRFCESCMAALLSSS-------SPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESS--CCCCSSSCCCCHHHHHHHHTTS-------SCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcC--eeECCCCCHHHHHHHHHHHHhC-------cCCCCCCCcCCChh
Confidence 5789999999865 4568999999999999999632 34699999988653
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=1.1e-09 Score=82.51 Aligned_cols=67 Identities=18% Similarity=0.388 Sum_probs=49.9
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC----CChHHHHHHHHhh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL----VSPVADVLREKLS 123 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~----~Spva~~Lre~la 123 (226)
...|+||++.+.+ .+.++|||+|+..||..|+.... +...||.|+.++....-. ...+.+.+++.+.
T Consensus 21 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 21 ILECPICLELIKE--PVSTKCDHIFCKFCMLKLLNQKK-----GPSQCPLCKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp HTSCSSSCCCCSS--CCBCTTSCCCCSHHHHHHHHSSS-----SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCCcccChhhcC--eEECCCCCHHHHHHHHHHHHhCC-----CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 4689999999854 56689999999999999998642 236799999998764322 3445566665543
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=74.17 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=37.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
.+..|+||++.+.+ .+.|+|||+||..||.+|++... ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK--PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS--CEECTTSSEECHHHHHHHHHHCS-----SCCCCSCC
T ss_pred cCCCCCcCCchhCC--eEEeCCCCcchHHHHHHHHHcCC-----CCCcCcCC
Confidence 35789999999864 67889999999999999998622 23579998
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.90 E-value=2.9e-09 Score=77.97 Aligned_cols=67 Identities=13% Similarity=0.415 Sum_probs=49.4
Q ss_pred CCcCccccccccCCCceeec-CCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHHhhh
Q psy15061 50 NPTCELCRKDLAAENCIRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN-LVSPVADVLREKLSS 124 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~-C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n-~~Spva~~Lre~laq 124 (226)
+-.|+||++.|. +.+.|+ |||+|+..||..|+.... .+.||+|+.++..... .....+..+.+.+.+
T Consensus 13 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHCT------TCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhcC------CCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 578999999986 478899 999999999999998632 3579999999743333 344455555555443
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=3.2e-09 Score=75.49 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
-+..|+||++.+.+ .+.++|||+|+..||..|+..... ......||.|+.++...
T Consensus 18 ~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKE--PVSADCNHSFCRACITLNYESNRN--TDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSS--CEECTTSCCBCHHHHHHHHHHSBC--TTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCc--ceeCCCCCHHHHHHHHHHHHhccC--CCCCCCCCCCCCcCCHH
Confidence 35789999999865 567899999999999999987421 12346799999988753
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.87 E-value=1.3e-09 Score=88.16 Aligned_cols=65 Identities=25% Similarity=0.512 Sum_probs=48.7
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC-CChHHHHHHHHhhh
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL-VSPVADVLREKLSS 124 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~-~Spva~~Lre~laq 124 (226)
..|+||++.|.+ .+.+ +|||+||..||..|+... ...||+|+.+|....++ ....++.|.+.+..
T Consensus 55 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 55 LMCPICLDMLKN--TMTTKECLHRFCADCIITALRSG-------NKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhC-------cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 489999999875 6776 999999999999999852 34699999998654332 44455556555544
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=1.7e-09 Score=74.79 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=39.8
Q ss_pred CCcCccccc-cccCCCc--eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRK-DLAAENC--IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~-~L~~gd~--vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++ .+.+... +.++|||+|+.+||++|+.+. ..+||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-------AGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-------SSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-------CCcCCCCCCcccc
Confidence 467999999 6765442 457999999999999998753 2469999999865
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.6e-09 Score=71.60 Aligned_cols=45 Identities=22% Similarity=0.690 Sum_probs=36.7
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C 100 (226)
.+..|+||++.+.+ .+.|+|||+||..||.+|+.... ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE--PVIIECGHNFCKACITRWWEDLE-----RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS--CCCCSSCCCCCHHHHHHHTTSSC-----CSCCCSCC
T ss_pred cCCCCccCCcccCc--cEeCCCCCccCHHHHHHHHHhcC-----CCCCCCCC
Confidence 45789999999865 46689999999999999987532 24579998
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.83 E-value=2.9e-09 Score=80.59 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=41.2
Q ss_pred CCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+-.|+||++.|.+ .+.+ +|||+||..||..|+... ..||.|+..+...
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETS--------KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSC--------SBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhC--------CcCcCCCcccccc
Confidence 5689999999864 7787 999999999999999862 5799999998764
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=77.13 Aligned_cols=55 Identities=24% Similarity=0.519 Sum_probs=43.0
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
-+..|+||++.+.+ .+.|+|||+|+..||..|++.... ......||.|++.+...
T Consensus 18 ~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQ--PLSLDCGHSFCQACLTANHKKSML--DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSS--CBCCSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCC--ceeCCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccCHH
Confidence 35789999999864 677899999999999999986210 01246799999998764
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.81 E-value=1.7e-09 Score=85.66 Aligned_cols=46 Identities=22% Similarity=0.703 Sum_probs=39.4
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|+||++.|.+ ++.|+|||.||..||..|+... ..||+|+++|-.
T Consensus 54 ~~C~iC~~~~~~--~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE--AVTLNCAHSFCSYCINEWMKRK--------IECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS--EEEETTSCEEEHHHHHHHTTTC--------SBCTTTCCBCCC
T ss_pred CCCcccCcccCC--ceECCCCCCccHHHHHHHHHcC--------CcCCCCCCcCCC
Confidence 579999999864 6789999999999999999763 369999998853
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.81 E-value=4.9e-10 Score=88.89 Aligned_cols=47 Identities=19% Similarity=0.602 Sum_probs=0.5
Q ss_pred CCcCccccccccC-------------CC--c-eeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAA-------------EN--C-IRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~-------------gd--~-vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+.+|+||++.|.+ ++ + +.++|+|+||..||++||+.. ..||+|+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCCCCCee
Confidence 4689999999965 22 2 335899999999999999873 2599999874
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.81 E-value=5.8e-09 Score=84.59 Aligned_cols=63 Identities=17% Similarity=0.403 Sum_probs=47.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC-CChHHHHHHHH
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL-VSPVADVLREK 121 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~-~Spva~~Lre~ 121 (226)
+..|+||++.|.+ .+.++|||+|+..||..|+... .+.||+|+.++.....+ .......+-+.
T Consensus 78 ~~~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 78 SFMCVCCQELVYQ--PVTTECFHNVCKDCLQRSFKAQ-------VFSCPACRHDLGQNYIMIPNEILQTLLDL 141 (150)
T ss_dssp HTBCTTTSSBCSS--EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred CCEeecCChhhcC--CEEcCCCCchhHHHHHHHHHhC-------CCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3689999999864 6779999999999999999862 35799999999876333 33333333333
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.80 E-value=2.1e-09 Score=82.91 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=44.0
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSP 113 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Sp 113 (226)
+-.|+||++.|.+ .+.++|||+|+..||..|++... .+||+|+.+|....-....
T Consensus 18 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~~~~~~ 72 (118)
T 3hct_A 18 KYECPICLMALRE--AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLENQLFPDN 72 (118)
T ss_dssp GGBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGGGCEECH
T ss_pred CCCCCcCChhhcC--eEECCcCChhhHHHHHHHHhhCC-------CCCCCCCCCcCHHhcccCH
Confidence 5789999999865 57789999999999999998742 3699999998764333333
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.77 E-value=2e-09 Score=76.31 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++.+.+ .+.|+|||+|+..||..|++.... .......||.|+.++..
T Consensus 12 ~~~C~IC~~~~~~--p~~l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE--PLSLDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS--CCCCSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC--eeECCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCH
Confidence 5789999999865 567899999999999999886321 11235789999999875
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=5.2e-09 Score=79.79 Aligned_cols=50 Identities=20% Similarity=0.547 Sum_probs=41.1
Q ss_pred CCCcCccccccccCC----C-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAE----N-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~g----d-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-+..|+||++.|.+. . .+.++|||+||..||++|++.. ..||+|+.+|-+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCCCCCcCCh
Confidence 357899999999752 2 3668999999999999999873 369999998864
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.74 E-value=3.7e-09 Score=80.57 Aligned_cols=49 Identities=20% Similarity=0.586 Sum_probs=40.5
Q ss_pred CCcCccccccccCC----C-ceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE----N-CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~g----d-~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++.|.+. + ++.++|||+||..||.+|++.. .+||+|++.+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCCCCCcCcc
Confidence 46799999999653 3 3678999999999999999863 369999998864
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.74 E-value=6e-09 Score=79.62 Aligned_cols=49 Identities=27% Similarity=0.740 Sum_probs=41.5
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+..|+||++.|.+ .+.++|||+|+..||..|+... +..||+|+.++...
T Consensus 23 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD--PVETSCKHLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC--cEEcCCCCcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 3689999999854 6779999999999999999873 34699999998753
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.73 E-value=3.7e-09 Score=80.69 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=40.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+-.|+||++.|.+ .+.|+|||+|+..||..|+.. +...||.|++.+.
T Consensus 15 ~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE--PVTLPCNHTLCKPCFQSTVEK-------ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS--CEECTTSCEECHHHHCCCCCT-------TTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc--eeEcCCCCHHhHHHHHHHHhH-------CcCCCCCCCcccC
Confidence 4679999999864 788999999999999999875 2357999999986
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=1.2e-08 Score=78.46 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=49.1
Q ss_pred CCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhh
Q psy15061 50 NPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVADVLREKLSS 124 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva~~Lre~laq 124 (226)
.-.|+||++.|.+ .+.| +|||+|+..||..|+. ..||+|+.++....-.....+..|.+.+.+
T Consensus 22 ~~~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 22 LLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp TTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCChHhhC--ccEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 5789999999854 7888 9999999999999987 259999999865444455666666665544
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.64 E-value=2.8e-08 Score=72.99 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=41.8
Q ss_pred CCCcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.+..|+||++++...+.+.+ +|||.|...||..+... +.+.||.|++++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 35789999999976665554 49999999999998754 247899999988753
No 48
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-08 Score=74.02 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=39.0
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
...|+||.+.+..|+.- ..|+|.||..||..||+....+ +||+|+++.
T Consensus 15 i~~C~IC~~~i~~g~~C-~~C~h~fH~~Ci~kWl~~~~~~------~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSC-ETCGIRMHLPCVAKYFQSNAEP------RCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSSSEEC-SSSCCEECHHHHHHHSTTCSSC------CCTTTCSCC
T ss_pred CCcCcchhhHcccCCcc-CCCCchhhHHHHHHHHHhcCCC------CCCCCcCcC
Confidence 47899999999876422 3999999999999999875323 599999864
No 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=7.3e-08 Score=78.09 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=42.0
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
-+-.|+||++.|.+ .|.++|||+|...||..|++... .+||+|+.+|...
T Consensus 17 ~~~~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE--AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC--cEECCCCCHHHHHHHHHHHHhCC-------CCCCCCccCcchh
Confidence 35789999999865 67799999999999999998632 3699999988764
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=6.4e-08 Score=65.92 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=38.7
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n 109 (226)
.-.|+||++.+.+ .+.|+|||+|+..||..| ..+||+|++.+..+.+
T Consensus 6 ~~~C~IC~~~~~~--p~~l~CgH~fC~~Ci~~~-----------~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 6 FLRCQQCQAEAKC--PKLLPCLHTLCSGCLEAS-----------GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CSSCSSSCSSCBC--CSCSTTSCCSBTTTCSSS-----------SSSCSSCCSSSSCCSS
T ss_pred CCCceEeCCccCC--eEEcCCCCcccHHHHccC-----------CCCCCcCCcEeecCCc
Confidence 4679999999864 678999999999999872 2469999999876554
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.36 E-value=5.3e-08 Score=78.26 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=41.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
+-.|+||++.|.+ .|.+.|||+|+..||..|++.. +..||+|+.+|...
T Consensus 31 ~~~C~IC~~~~~~--pv~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 31 KYLCSACRNVLRR--PFQAQCGHRYCSFCLASILSSG-------PQNCAACVHEGIYE 79 (141)
T ss_dssp GGBCTTTCSBCSS--EEECTTSCEEEHHHHHHHGGGS-------CEECHHHHHTTCCC
T ss_pred CcCCCCCChhhcC--cEECCCCCccCHHHHHHHHhcC-------CCCCCCCCCccccc
Confidence 4689999999865 5779999999999999999853 34699999987654
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=2e-07 Score=78.98 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=50.2
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHhhhhhhh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPVA-DVLREKLSSVNWA 128 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spva-~~Lre~laq~~Wa 128 (226)
.-.|+||++.|.+ +|.++|||+|-..||..|+... +..||.|+.++-+..-+....+ ..+.+.+.+.+|+
T Consensus 208 ~~~c~i~~~~~~d--Pv~~~~gh~f~~~~i~~~~~~~-------~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 208 YLCGKISFELMRE--PCITPSGITYDRKDIEEHLQRV-------GHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp TTBCTTTCSBCSS--EEECSSCCEEETTHHHHHHHHT-------CSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred ccCCcCcCCHhcC--CeECCCCCEECHHHHHHHHHHC-------CCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 4689999999864 8999999999999999999873 3359999999865433333333 3333444444454
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.33 E-value=3.4e-07 Score=85.59 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=40.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
...|+||++.+.+ ++.++|||+||..|+..|+.+. ...||.|+.+|-.
T Consensus 332 ~~~C~ICle~~~~--pv~lpCGH~FC~~Ci~~wl~~~-------~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD--VKIEPCGHLMCTSCLTSWQESE-------GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC--EEEETTCCEECHHHHHHHHHHT-------CSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC--eEEeCCCChhhHHHHHHHHhcC-------CCCCCCCCCccCC
Confidence 4689999998744 7889999999999999999852 2369999998865
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.32 E-value=7.6e-07 Score=65.59 Aligned_cols=48 Identities=15% Similarity=-0.038 Sum_probs=41.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.-.|+||++.|.+ .|.++|||+|-.+||..|+... .+||.|+.++-..
T Consensus 14 ~~~CpI~~~~m~d--PV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 14 EFRDPLMDTLMTD--PVRLPSGTVMDRSIILRHLLNS--------PTDPFNRQMLTES 61 (85)
T ss_dssp TTBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred heECcccCchhcC--CeECCCCCEECHHHHHHHHhcC--------CCCCCCcCCCChH
Confidence 4689999999865 8999999999999999999862 4699999987653
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.29 E-value=5e-07 Score=68.89 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=41.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.-.|+||++.|.+ +|.++|||+|-..||..|+.. ..+||.|+.++-..
T Consensus 29 ~~~CpI~~~~m~d--PV~~~cGhtf~r~~I~~~l~~--------~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 29 EFRDPLMDTLMTD--PVRLPSGTIMDRSIILRHLLN--------SPTDPFNRQTLTES 76 (100)
T ss_dssp TTBCTTTCSBCSS--EEEETTTEEEEHHHHHHHTTS--------CSBCSSSCCBCCTT
T ss_pred hhCCcCccCcccC--CeECCCCCEEchHHHHHHHHc--------CCCCCCCCCCCChh
Confidence 4689999999865 899999999999999999985 24699999988654
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=8.1e-07 Score=66.36 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=40.0
Q ss_pred CCcCccccccccCCCceeec-CCCccCHHHHHHHHHhCCCCCCCCCCCCCC--CCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQ--CKTG 103 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~-C~HvFH~~CLd~wl~~~p~nTapag~~CP~--C~~~ 103 (226)
+-.|+||++.|.+ +|.++ |||+|-.+||..|+..... ...+++||. |+..
T Consensus 7 ~~~CPI~~~~~~d--PV~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKK--PVKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSS--EEEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcC--CEEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 4679999999864 89995 9999999999999986311 013568999 9876
No 57
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.23 E-value=7.2e-07 Score=62.62 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=36.5
Q ss_pred CCCcCccccccccCCCceeecCC--C---ccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCY--H---VYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~--H---vFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
-...|.||+++. ++.+.++|. + .||.+||..|+..... ..||+|+.++
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~------~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRN------TACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTC------SBCTTTCCBC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCC------CccCCCCCee
Confidence 457899999873 444567865 4 9999999999986332 3699999865
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.22 E-value=2.3e-07 Score=86.30 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=42.7
Q ss_pred CCCCCcCccccccccC-CCce-----eecCCCccCHHHHHHHHHhCCCC-CCC--CCCCCCCCCCCCC
Q psy15061 47 SDYNPTCELCRKDLAA-ENCI-----RLTCYHVYHWSCLNHYARQLPST-TAP--AGYKCPQCKTGLF 105 (226)
Q Consensus 47 sDyd~~C~IC~~~L~~-gd~v-----RL~C~HvFH~~CLd~wl~~~p~n-Tap--ag~~CP~C~~~I~ 105 (226)
.+....|+||...+.+ |.+- -+.|+|.||..||.+||++.+.. ++- ..-.||.|+++|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3567899999999987 4321 25899999999999999875421 000 0135999999875
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.22 E-value=1.6e-06 Score=65.87 Aligned_cols=48 Identities=8% Similarity=-0.108 Sum_probs=41.3
Q ss_pred CCcCccccccccCCCceeecCC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
.-.|+||++.|.+ .|.++|| |+|-..||..|+... .+||.|+.++-..
T Consensus 22 ~~~CpI~~~~m~d--PV~~~cG~htf~r~cI~~~l~~~--------~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPIMSTLMCD--PVVLPSSRVTVDRSTIARHLLSD--------QTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHTTTS--------CBCTTTCSBCCTT
T ss_pred hcCCcCccccccC--CeECCCCCeEECHHHHHHHHHhC--------CCCCCCCCCCChh
Confidence 4689999999865 8999999 999999999999852 3699999988654
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.20 E-value=5.5e-07 Score=64.41 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=35.9
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|+||++.+.+ ++.|+|||+ |...|+..| ..||+|+++|-
T Consensus 24 ~~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIA--IVFVPCGHLVTCKQCAEAV------------DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCC--EEEETTCCBCCCHHHHTTC------------SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCC--EEEcCCCChhHHHHhhhcC------------ccCCCcCcCcc
Confidence 4689999998754 778999999 999999988 15999999875
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.16 E-value=8.5e-07 Score=62.11 Aligned_cols=46 Identities=15% Similarity=0.431 Sum_probs=37.1
Q ss_pred CCcCccccccccCCCceee--cCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL--TCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL--~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|.||++...+ ++.+ +|||+ |=.+|+..|.+.. ..||+|+++|.
T Consensus 8 ~~~C~IC~~~~~~--~~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKN--GCIVHGKTGHLMACFTCAKKLKKRN--------KPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSC--EEEEETTEEEEEECHHHHHHHHHTT--------CCCTTTCCCCC
T ss_pred cCCCCcCCCCCCC--EEEECCCCCChhhHHHHHHHHHHcC--------CcCCCcCcchh
Confidence 5689999998654 4544 99999 6799999998752 36999999884
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=2e-07 Score=69.03 Aligned_cols=54 Identities=22% Similarity=0.597 Sum_probs=41.1
Q ss_pred CCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCC--CCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQ--CKTG 103 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~--C~~~ 103 (226)
.-.|+||++.+...+.++| +|||.|-.+||..|++..-........+||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999999987777887 6999999999999987521100012368999 9987
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.11 E-value=9.2e-07 Score=61.77 Aligned_cols=49 Identities=27% Similarity=0.534 Sum_probs=37.8
Q ss_pred CCCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+..|.||++...+...+-++|||+ |-.+|+..|.+. +.+||+|+++|-
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--------GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--------TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--------CCcCCCcCchhh
Confidence 3578999999865432223499998 999999999875 246999999883
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.03 E-value=3.2e-06 Score=71.30 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHhhhhhhh
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSP-VADVLREKLSSVNWA 128 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Sp-va~~Lre~laq~~Wa 128 (226)
.-.|+||++.|.+ +|.++|||+|=..||..|+... |..||.|+.++-...-+... +...+.+.+.+.+|+
T Consensus 106 ~f~CPI~~elm~D--PV~~~~Ghtfer~~I~~~l~~~-------~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 106 YLCGKISFELMRE--PCITPSGITYDRKDIEEHLQRV-------GHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp GGBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred hhcccCccccCCC--CeECCCCCEECHHHHHHHHHhC-------CCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 3689999999864 8999999999999999999873 23699999987553222222 333333444444454
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2.6e-06 Score=60.82 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=34.9
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|+||++.+.+ ++.|+|||+ |...|+... ..||+|+++|..
T Consensus 25 ~~~C~IC~~~~~~--~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA--IVFVPCGHLVTCKQCAEAV------------DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC--BCCSSSCCCCBCHHHHHHC------------SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC--EEEecCCCHHHHHHHhhCC------------CCCccCCceecC
Confidence 4679999998744 677899999 999999532 259999998864
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=6.1e-05 Score=53.39 Aligned_cols=43 Identities=23% Similarity=0.630 Sum_probs=35.3
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|.||++... +++-|+|||+ |-..|+.. . .+||+|+.+|..
T Consensus 15 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~----~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKY----F--------QQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSCC--CCEETTTTBCCSCTTHHHH----C--------SSCTTTCCCCCC
T ss_pred CCCCCCcCcCCC--CEEEECCCChhhhHHHHhc----C--------CCCCCCCcchhc
Confidence 578999999754 4777899999 99999983 1 259999998864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.44 E-value=3.4e-05 Score=56.16 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=34.8
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|.||++.+. +++.|+|||+ |=..|+..|. .||+|+.+|-
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~~------------~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQLQ------------SCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTCS------------BCTTTCCBCC
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhcC------------cCCCCCchhh
Confidence 468999998864 4788999999 9999998662 5999999874
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.38 E-value=3.7e-05 Score=70.39 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=36.1
Q ss_pred CCcCccccccccCCCceeecCCCc-cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHV-YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~Hv-FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+..|+||++.+.+ ++.|+|||+ |...|+..| ..||+|+.+|-
T Consensus 295 ~~~C~IC~~~~~~--~v~lpCgH~~fC~~C~~~~------------~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVS--VVFIPCGHLVVCQECAPSL------------RKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCC--EEEETTCCEEECTTTGGGC------------SBCTTTCCBCC
T ss_pred CCCCCccCCcCCc--eEEcCCCChhHhHHHHhcC------------CcCCCCCCCcc
Confidence 4789999999754 788999999 999999987 15999999875
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.38 E-value=6.2e-05 Score=67.39 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=40.6
Q ss_pred CCcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCC--CCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQ--CKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~--C~~~I~P 106 (226)
.-.|+||++.|.+ +|+. .|||+|=.+||..|++.. +...||+ |++.+-.
T Consensus 181 el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCch
Confidence 4789999999954 8885 999999999999999752 2357999 9997654
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.04 E-value=0.00031 Score=49.05 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=39.0
Q ss_pred CcCccccccccCCCceee-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|+|+++.|. |.|.+ .+||+|=.+||.+|++... +||+.+.++-.
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~~--------~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTG--------NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHHS--------BCTTTCCBCCG
T ss_pred EEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhCC--------CCcCCcCCCCh
Confidence 46999999997 57888 9999999999999998631 49999988753
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.00 E-value=0.00056 Score=59.51 Aligned_cols=51 Identities=24% Similarity=0.542 Sum_probs=40.4
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
....|.+|.+-+..| ++ -.|+|.||..|+..|++... ..+||.|+.+ ||-.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~------~~~CP~C~~~-W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNA------EPRCPHCNDY-WPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCS------SCBCTTTCCB-CCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCC------CCCCCCCCCC-CCCC
Confidence 458899999999876 33 24999999999999998643 3469999986 7643
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.16 E-value=0.0038 Score=48.69 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=35.5
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
-|.+|.-++.. -.| ++|+|+|=.+|+..|.++.. ..||.|+.+|.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGD-------KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTC-------CBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccC-------CCCcCcCCeee
Confidence 37888888743 246 49999999999999987632 36999999885
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.40 E-value=0.015 Score=41.51 Aligned_cols=52 Identities=23% Similarity=0.714 Sum_probs=38.8
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~ 107 (226)
-+..|.||.+ .|+.+. -.|...||..||+.-|...|. +...||.|.....|.
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~----g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPG----TGLRCRSCSGDVTPA 63 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCS----SSCCCTTTTTCCCCC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCC----CCEECccccCCCccC
Confidence 3577999974 355443 379999999999988877653 468999998766553
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.06 E-value=0.082 Score=34.94 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=33.3
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
.|.||...=..++.|. -.|.-.||..|++.=+...|. +...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~----g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD----GEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCS----SCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCC----CcEECcCccc
Confidence 5889987644444444 389999999999865544432 3588999965
No 75
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.79 E-value=0.14 Score=35.54 Aligned_cols=47 Identities=30% Similarity=0.751 Sum_probs=33.9
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-+..|.+|... |+.+. -.|.-.||..||+.-+...|. +...||.|.+
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~----g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPE----GKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCC----SSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCC----CceECccccc
Confidence 45789999873 44444 379999999999875544332 3588999965
No 76
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.19 E-value=0.11 Score=35.97 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=34.3
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
-+..|.+|.. .|+.+. -.|.-.||..||+.-+...|. +...||.|....
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPN----GEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCS----SCCCCTTTTTTC
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCC----CccCChhhcCch
Confidence 3577999985 344333 379999999999875554432 357899997643
No 77
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.60 E-value=0.085 Score=40.43 Aligned_cols=76 Identities=20% Similarity=0.552 Sum_probs=45.9
Q ss_pred cccccccCCCCcceee--eehhhccCCCCC----CcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCC
Q psy15061 23 VCEYCMVTNHPKCIVQ--SYLQWLEDSDYN----PTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAG 94 (226)
Q Consensus 23 VCe~C~v~~H~~CvVq--SYlqWL~DsDyd----~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag 94 (226)
.|..|-..-|..|+-- ...+-+...+.. ..|.+|...=.+++.+.+ .|...||..||+.-|...|. +.
T Consensus 28 ~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~----~~ 103 (112)
T 3v43_A 28 SCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK----GM 103 (112)
T ss_dssp ECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS----SC
T ss_pred EhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC----CC
Confidence 4666766668888731 223334443322 356777754222222222 79999999999876665443 35
Q ss_pred CCCCCCCC
Q psy15061 95 YKCPQCKT 102 (226)
Q Consensus 95 ~~CP~C~~ 102 (226)
..||.|+.
T Consensus 104 W~C~~C~~ 111 (112)
T 3v43_A 104 WICQICRP 111 (112)
T ss_dssp CCCTTTSC
T ss_pred eECCCCCC
Confidence 88999974
No 78
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.81 E-value=0.84 Score=34.30 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=33.7
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
..| ||.....+|..|. =.|.--||..|+.. +....|..|.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~-----~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI-----DRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC-----CTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC-----CccCCCCCEECCCCcC
Confidence 457 8988866665444 37999999999963 3334567899999963
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.35 E-value=0.82 Score=34.78 Aligned_cols=50 Identities=24% Similarity=0.598 Sum_probs=33.4
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHH--HHh-------CCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHY--ARQ-------LPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~w--l~~-------~p~nTapag~~CP~C~ 101 (226)
|..|.||..- ..++... -.|+-+||..||... ++. ..++ ...|..||.|.
T Consensus 15 D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~-T~~GWSC~~Ce 74 (89)
T 1wil_A 15 DEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAH-TETGWSCHYCD 74 (89)
T ss_dssp SCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCS-SSSSCCCTTTC
T ss_pred CcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccC-CCCCccccccc
Confidence 6789999754 3444333 379999999999997 111 1111 14689999993
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.63 E-value=0.36 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=33.4
Q ss_pred CCCcCccccccccCCCceee-cCCCccCHHHHHHHHH-----h--CCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYAR-----Q--LPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL-~C~HvFH~~CLd~wl~-----~--~p~nTapag~~CP~C~~ 102 (226)
++..|.+|.+ .|+.+-- .|--+||..||+.-+. . .+ .+...||.|..
T Consensus 62 ~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCC
T ss_pred CCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccC
Confidence 6788999985 3553332 8999999999996653 1 12 24688999963
No 81
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=84.20 E-value=0.083 Score=40.20 Aligned_cols=54 Identities=19% Similarity=0.400 Sum_probs=32.5
Q ss_pred CCCcCccccccccCCC-cee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAEN-CIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd-~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+-..|..|...-+.++ .+. -.|...||..|+.-..+......++.+|.||.|..
T Consensus 58 ~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 58 LCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccCcccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3344455543322222 222 37999999999976544333334567899999963
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.19 E-value=0.16 Score=38.47 Aligned_cols=80 Identities=24% Similarity=0.554 Sum_probs=48.5
Q ss_pred ccccccccCCCCcceeeeehhhccCCCCC-C---cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCC
Q psy15061 22 NVCEYCMVTNHPKCIVQSYLQWLEDSDYN-P---TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYK 96 (226)
Q Consensus 22 nVCe~C~v~~H~~CvVqSYlqWL~DsDyd-~---~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~ 96 (226)
-.|..|--.-|..|+.-... -+...+.. + .|.+|.+.-.+...+. -.|.-.||..||+.-+...|. ....
T Consensus 23 l~C~~C~~~~H~~Cl~~~~~-~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~----g~W~ 97 (111)
T 2ysm_A 23 FFCTTCGQHYHGMCLDIAVT-PLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPT----NGWK 97 (111)
T ss_dssp EECSSSCCEECTTTTTCCCC-TTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCS----SCCC
T ss_pred eECCCCCCCcChHHhCCccc-cccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCC----CCcC
Confidence 35677777778888865422 12222221 2 4667766533322333 379999999999876555443 3688
Q ss_pred CCCCCCCCCC
Q psy15061 97 CPQCKTGLFP 106 (226)
Q Consensus 97 CP~C~~~I~P 106 (226)
||.|.....-
T Consensus 98 C~~C~~c~~g 107 (111)
T 2ysm_A 98 CKNCRICISG 107 (111)
T ss_dssp CHHHHCCSCS
T ss_pred CcCCcCcCCC
Confidence 9999765443
No 83
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.80 E-value=0.33 Score=35.33 Aligned_cols=46 Identities=30% Similarity=0.702 Sum_probs=32.6
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCC--CCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAG--YKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag--~~CP~C~~ 102 (226)
.|.||...-..++.+- =.|.-.||..||+.=|... |.| ..||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~-----P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKV-----PEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSC-----CCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCC-----CCCCCcCCcCccC
Confidence 6999987643444333 2899999999998655443 344 78999964
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.95 E-value=0.29 Score=37.03 Aligned_cols=49 Identities=31% Similarity=0.640 Sum_probs=33.4
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
-+..|.+|.+.-+.++.|. -.|+..||..||+..+...+ .++..||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~----~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLK----RAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTT----STTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccccc----ccCccCCcCC
Confidence 3578999987632222344 48999999999987654322 2567888875
No 85
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.20 E-value=0.92 Score=30.75 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=29.4
Q ss_pred CCCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.+.|..|.+.+..++.+...=+.+||.+| |+|-.|+++|-.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHC----------------FLCSGCEQPLGS 45 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTT----------------CBCTTTCCBTTT
T ss_pred ccCCCCccCCCccccCccEEEECccccCccc----------------CeECCCCCcCCC
Confidence 3668899999988775433333467888766 358888887653
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.84 E-value=0.095 Score=35.55 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=33.3
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-+..|.+|... |+.|. -.|.-.||..|++.-+...|. +...||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~----g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCC----SSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCC----CceEChhhhC
Confidence 35779999874 55444 389999999999875554432 3578998853
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.07 E-value=1.5 Score=33.37 Aligned_cols=48 Identities=27% Similarity=0.576 Sum_probs=30.0
Q ss_pred CCcCccccccc------cCCCcee-ecCCCccCHHHHHH---HHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDL------AAENCIR-LTCYHVYHWSCLNH---YARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L------~~gd~vR-L~C~HvFH~~CLd~---wl~~~p~nTapag~~CP~C~ 101 (226)
...|.+|++.= ..++.|. -.|+..||..||+. .....+ ..+..||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK----ALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH----TSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh----ccccccccCC
Confidence 46788997652 1123344 48999999999962 222211 1357788885
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.34 E-value=0.49 Score=38.63 Aligned_cols=50 Identities=24% Similarity=0.558 Sum_probs=35.5
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+..|.+|... |+.+- =.|.-.||..|++.-+...|. +...||.|+..--|
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~----~~W~C~~C~~~~~~ 54 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPS----GEWICTFCRDLSKP 54 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCC----CCEECccccCcccc
Confidence 4569999843 55333 279999999999876654442 35899999876554
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.27 E-value=0.34 Score=40.48 Aligned_cols=51 Identities=22% Similarity=0.516 Sum_probs=35.1
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-+..|.+|... |+.+- =.|.-.||..|++.-+...|. +...||.|...--+
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPS----GDWICTFCRDIGKP 57 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCC----CCEEeCceeCcccc
Confidence 35679999743 44222 179999999999876655432 35899999875443
No 90
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.19 E-value=0.6 Score=31.96 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=35.4
Q ss_pred CCCCcCccccccccCCC-cee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAEN-CIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd-~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+-...|++|..+..++. .|. -.|..=||..|+.--..... .+..|.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAE---HIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGG---GCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhc---CCCcEECCCCcC
Confidence 34567999999986543 444 37999999999854322110 146799999965
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.96 E-value=0.27 Score=41.32 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=34.9
Q ss_pred CcCccccccccCCC----cee-ecCCCccCHHHHHHH------HHhCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAEN----CIR-LTCYHVYHWSCLNHY------ARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 51 ~~C~IC~~~L~~gd----~vR-L~C~HvFH~~CLd~w------l~~~p~nTapag~~CP~C~~~I 104 (226)
..|+||.....+++ .|. -.|..-||..|..-- +...|.+ ..|.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~---~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPES---VAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHH---HCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCC---CeeECcCCCCCC
Confidence 46999999998876 333 379999999998431 1111110 269999998653
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.49 E-value=0.84 Score=34.36 Aligned_cols=46 Identities=20% Similarity=0.626 Sum_probs=33.6
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+..|.+|.+. |+.+. -.|.-.||..||+.=+...|. +...||.|..
T Consensus 25 ~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~----g~W~C~~C~~ 71 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHV 71 (88)
T ss_dssp SSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCS----SSCCCCSCCC
T ss_pred CCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcC----CCcCCccccC
Confidence 4679999864 55444 379999999999876655443 3578999974
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.40 E-value=0.2 Score=34.29 Aligned_cols=46 Identities=33% Similarity=0.831 Sum_probs=32.8
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+..|.+|... |+.+. =.|.-.||..|++.-+...|. +...||.|..
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCC----SCCCCHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCC----CceEChhccC
Confidence 4679999874 55444 389999999999875544332 3578999843
No 94
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.37 E-value=0.62 Score=32.90 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=33.6
Q ss_pred CCcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAP-AGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTap-ag~~CP~C~~~I 104 (226)
...|.+|...- +|+...+ .|.--||..|+.--+. .++ ..|.||.|...+
T Consensus 18 ~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~-----~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAA-----PPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSC-----CCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCcc-----CCCCCCEEChhccCch
Confidence 35699998885 4543333 7999999999974332 222 469999996543
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.97 E-value=0.21 Score=34.89 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=33.5
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
-+..|.||... |+.+. =.|.-.||..||+.-+...|. +...||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~----g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPS----GTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCS----SCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCC----CCeECccccCc
Confidence 46789999863 55443 379999999999864444332 35789999643
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.47 E-value=1.9 Score=30.93 Aligned_cols=56 Identities=21% Similarity=0.510 Sum_probs=37.7
Q ss_pred CCCcCccccccccCCCcee-e--cCCCccCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-L--TCYHVYHWSCLNHYARQLPS---TTAPAGYKCPQCKTGLFPP 107 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L--~C~HvFH~~CLd~wl~~~p~---nTapag~~CP~C~~~I~P~ 107 (226)
....| ||......|..|. = .|..=||..|+.---. +. ...+..|.||.|+..-.++
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~--~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDK--PMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCT--TTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccc--cccccccCCCCEECCCCCcccCCC
Confidence 44678 8999866676665 3 6999999999953211 11 0124679999997665544
No 97
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.36 E-value=1.4 Score=29.85 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
|.+.|..|.+.+..++.+...=+.+||.+| |+|-.|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETC----------------FICHRCQQPIGT 45 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTT----------------TCCSSSCCCCCS
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccC----------------CcccccCCccCC
Confidence 567888888888776433223356777665 358888877653
No 98
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.21 E-value=1.6 Score=32.87 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=32.2
Q ss_pred CCcCccccccccCCCceee-c--CC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-T--CY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~--C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
...| ||.+.. .|+.|.= . |. .-||..|+. |...| ...|.||.|...--
T Consensus 36 ~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg--l~~~p----~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 36 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKP----RGKWFCPRCSQESG 87 (91)
T ss_dssp CBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT--CSSCC----CSSCCCTTTCCCCS
T ss_pred CcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC--cCcCC----CCCEECcCccCcCC
Confidence 4567 999875 4654442 4 66 689999998 44333 24699999976543
No 99
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=74.89 E-value=0.88 Score=31.43 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=6.8
Q ss_pred CcCccccccccCC
Q psy15061 51 PTCELCRKDLAAE 63 (226)
Q Consensus 51 ~~C~IC~~~L~~g 63 (226)
-.|..|...|..+
T Consensus 28 F~C~~C~~~L~~~ 40 (76)
T 1iml_A 28 LKCEKCGKTLTSG 40 (76)
T ss_dssp CBCTTTCCBCCTT
T ss_pred CCccccCccCCCC
Confidence 4455555555444
No 100
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.58 E-value=2.1 Score=29.27 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=31.2
Q ss_pred cCCCCCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 45 EDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 45 ~DsDyd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.-+.+.|+.|.+.+..++.+.-.=+.+||.+| |+|-.|++++..
T Consensus 6 ~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 51 (77)
T 1g47_A 6 ANALASATCERCKGGFAPAEKIVNSNGELYHEQC----------------FVCAQCFQQFPE 51 (77)
T ss_dssp CSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTT----------------CCCTTTCCCCGG
T ss_pred ccCCCCCCchhcCCccCCCceEEEeCccEecccc----------------CeECCCCCCCCC
Confidence 3444678899999998765543323466788766 358888887754
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.43 E-value=0.22 Score=38.23 Aligned_cols=76 Identities=22% Similarity=0.533 Sum_probs=47.0
Q ss_pred ccccccccCCCCcceeee--ehhhccCCCCC----CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCC
Q psy15061 22 NVCEYCMVTNHPKCIVQS--YLQWLEDSDYN----PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAG 94 (226)
Q Consensus 22 nVCe~C~v~~H~~CvVqS--YlqWL~DsDyd----~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag 94 (226)
--|..|-..-|+.|+--+ .++-+...+.. ..|.||...-.+++.+. -.|...||..||+.=+...|. +.
T Consensus 24 i~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~----g~ 99 (114)
T 2kwj_A 24 VSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPE----GS 99 (114)
T ss_dssp EECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCS----SC
T ss_pred eEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCC----CC
Confidence 346777777888997432 11223332222 35778877654444443 389999999999875544332 35
Q ss_pred CCCCCCC
Q psy15061 95 YKCPQCK 101 (226)
Q Consensus 95 ~~CP~C~ 101 (226)
..||.|.
T Consensus 100 W~C~~C~ 106 (114)
T 2kwj_A 100 WSCHLCW 106 (114)
T ss_dssp CCCHHHH
T ss_pred eECcccc
Confidence 7788884
No 102
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=74.23 E-value=0.51 Score=33.59 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=31.1
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCC-CCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPA-GYKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapa-g~~CP~C~~ 102 (226)
.|.+|...=..|+.+. =.|.-.||..||+.=|...|. + ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~----g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS----EDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCS----SSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCC----CCCcCCcCccC
Confidence 4677776533333332 179999999999865554432 2 578999964
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.08 E-value=1.3 Score=31.67 Aligned_cols=46 Identities=24% Similarity=0.673 Sum_probs=31.2
Q ss_pred CCcCccccccccCCCceee-c--CC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL-T--CY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~--C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
...| ||...- .|+.|.= . |. .-||..|+. |...|. ..+.||.|...
T Consensus 16 ~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~----g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT--CSSCCS----SCCCCTTTSSC
T ss_pred CCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC--cCcCCC----CCEECCCCCcc
Confidence 4667 899874 4654442 4 76 699999998 443331 46999999754
No 104
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.72 E-value=2.2 Score=29.59 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=28.6
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+.+.|..|.+.+..++.+...=+.+||.+| |+|-.|+++|..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDC----------------FTCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTT----------------CCCSSSCCCCTT
T ss_pred cCCcCccCCcccccCceEEEECcccccccc----------------CchhhCCCccCC
Confidence 457888888888776543333366788766 358888877754
No 105
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.81 E-value=1.7 Score=29.89 Aligned_cols=41 Identities=24% Similarity=0.540 Sum_probs=30.1
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+.+.|..|.+.+..++.|. .-+..||.+| |+|-.|+++|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS-SLGKDWHKFC----------------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE-ETTEEEETTT----------------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEE-ECCeEeeCCC----------------CCCCCCCCccCC
Confidence 4688999999988777554 3467788766 358889887763
No 106
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=72.58 E-value=0.18 Score=35.48 Aligned_cols=52 Identities=19% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCCcCccccccccCCCceee---cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRL---TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL---~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
....| ||......|..|.- .|.-=||..|+.---........|..|.||.|+
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 34557 79888777877775 399899999984221111111234579999996
No 107
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.56 E-value=2.7 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHH
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSC 78 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~C 78 (226)
+.+.|..|.+.+...+.+...=+..||.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C 33 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGC 33 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTT
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccC
Confidence 456677777776553322222355666655
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.24 E-value=0.73 Score=38.28 Aligned_cols=46 Identities=20% Similarity=0.597 Sum_probs=32.1
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
..|.+|.+. |+.+. -.|--.||..|++.=+...|. +...||.|...
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~----g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCC----TTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCC----CCCCCcCccCC
Confidence 459999843 55333 379999999999765444332 35789999765
No 109
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.09 E-value=3.7 Score=31.12 Aligned_cols=53 Identities=21% Similarity=0.511 Sum_probs=39.2
Q ss_pred CCcCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCC---CCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTT---APAGYKCPQCKT 102 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nT---apag~~CP~C~~ 102 (226)
.-.|.+|.+.|++.--|.- .=+|.|--.|-..+++++-.++ .|.|-+||+=..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS 72 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGS 72 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSS
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCC
Confidence 3679999999988765653 4689999999999999754443 466666666443
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=71.36 E-value=0.63 Score=33.95 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=30.8
Q ss_pred cCccccccccCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
.|.+|...-..+ .+.+ .|.-.||..||+.-|...|.- ....||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g---~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSS---SCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCC---CceECcCccc
Confidence 477777653322 3333 799999999999776654421 1268999975
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=71.23 E-value=1.3 Score=31.39 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=32.9
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
..| ||..+...+..|. -.|..=||.+|+.-- ...+|..|.||.|+.
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~-----~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR-----KSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC-----TTSCCSSCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCCccccccccCcC-----cccCCCcEECCCCCC
Confidence 557 9998865333455 479999999999632 223567899999964
No 112
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.35 E-value=3.3 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCCcCccccccccC--CCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA--ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~--gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|..|.+.+.. ++.+...-+..||.+|+ +|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF----------------~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCF----------------NCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTC----------------BCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccC----------------EeccCCCcCC
Confidence 56789999998875 22222235678887763 5888888764
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=69.56 E-value=5.3 Score=31.86 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=34.1
Q ss_pred cCCC-CCCcCccccccccCCCcee-ecCCCccCHHHHHHH-----HHhCCCCCCCCCCCCCCCC
Q psy15061 45 EDSD-YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHY-----ARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 45 ~DsD-yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~w-----l~~~p~nTapag~~CP~C~ 101 (226)
+|.| ++..|.+|.+. |+.+- =.|-.+||.+||+.- +.... .+.....|+.|.
T Consensus 51 ~d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~~~~W~C~~C~ 109 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIM--DENNQWYCYICH 109 (129)
T ss_dssp BCTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHT--CTTSCCCCTTTC
T ss_pred cCCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhc--cCCCCeEcCCcC
Confidence 4444 67889999853 44221 279999999999975 33321 012468999994
No 114
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.03 E-value=2.9 Score=27.81 Aligned_cols=42 Identities=29% Similarity=0.542 Sum_probs=30.7
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+.+.|..|.+.+..++.+...=+.+||.+|+ +|-.|++++-.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF----------------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF----------------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTS----------------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCC----------------cccCCCCCCCC
Confidence 4578999999998776443344667887775 48889888754
No 115
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.00 E-value=3.2 Score=28.58 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=27.8
Q ss_pred CCCcCccccccccC--CCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA--ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~--gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|.+.|..|.+++.. ++.+...-+..||.+|+ +|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF----------------~C~~C~~~L~ 46 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECF----------------NCGKCSVSLV 46 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC----------------BCTTTCCBCS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccC----------------ChhhCCCcCC
Confidence 66789999998875 22222334668888773 4888887764
No 116
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.97 E-value=3.5 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=22.5
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|.+.|..|.+.+. +..|+ .-+..||.+| |+|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 52 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMV-AGEFKYHPEC----------------FACMSCKVIIE 52 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBC-CTTCCBCTTS----------------CBCTTTCCBCC
T ss_pred cCCcCccCCCCcC-ceEEE-ECCceecccc----------------CCccCCCCccC
Confidence 3466777777776 33333 2255666554 34777776664
No 117
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=64.93 E-value=4.4 Score=29.30 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=26.0
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHH
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHY 82 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~w 82 (226)
+..|.||.+.+....+.. |.|+|.|=..||..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 467999998754444555 999999999999983
No 118
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=63.34 E-value=2.8 Score=27.91 Aligned_cols=39 Identities=18% Similarity=0.576 Sum_probs=26.9
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|+.|.+.+. ++.|+ .=+..||.+| |+|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 42 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVN-AMGKQWHVEH----------------FVCAKCEKPFL 42 (66)
T ss_dssp CCCEETTTTEECC-SCEEC-CTTSBEETTT----------------CBCTTTCCBCS
T ss_pred CCCCCcccCCEec-ceEEE-ECccccccCc----------------CEECCCCCCCC
Confidence 5678888888887 55433 3456777766 35888888775
No 119
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.53 E-value=8.2 Score=29.05 Aligned_cols=48 Identities=6% Similarity=-0.119 Sum_probs=31.6
Q ss_pred CcCccccccccC-CCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAA-ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~-gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|..|...|.+ |...-..=+-+|-..|..+.+... -+|-.|+++|.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~--------~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS--------GAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC--------CSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC--------CccccCCCCcCc
Confidence 478888888863 333333445567677777765431 159999999986
No 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.37 E-value=4 Score=28.76 Aligned_cols=39 Identities=23% Similarity=0.598 Sum_probs=28.9
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.|..|.+.+..++.|+. =+..||.+| |+|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a-~~~~wH~~C----------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA-LDKQWHVSC----------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE-TTEEECTTT----------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE-CCccccccc----------------CCcCcCCCCcC
Confidence 5789999999987775543 256788776 35888988774
No 121
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=61.66 E-value=1.1 Score=28.27 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCC
Q psy15061 92 PAGYKCPQCKTGLF 105 (226)
Q Consensus 92 pag~~CP~C~~~I~ 105 (226)
..||.||+|++.+-
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35899999987654
No 122
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=61.05 E-value=0.64 Score=32.42 Aligned_cols=49 Identities=27% Similarity=0.695 Sum_probs=30.7
Q ss_pred CCCCCCcCccccccccCCCceee-c--CC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 46 DSDYNPTCELCRKDLAAENCIRL-T--CY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 46 DsDyd~~C~IC~~~L~~gd~vRL-~--C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
|.+-...| +|.+. ..|+.|.= . |. .-||.+|+. |...| ...+.||.|..
T Consensus 7 d~~e~~yC-~C~~~-~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p----~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQV-SYGEMIGCDNEQCPIEWFHFSCVS--LTYKP----KGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEE-CCSEEEECSCTTCSSCEEETGGGT--CSSCC----SSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCC-CCCCeeeeeCCCCCcccEecccCC--cCcCC----CCCEECcCccc
Confidence 44444567 99987 35654442 4 65 899999998 33322 24689999964
No 123
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.88 E-value=2.8 Score=28.63 Aligned_cols=52 Identities=19% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCCCcCccccccccC--CCcee-ecCCCccCHHHHHHHHHh--C-CCCCCCCCCCCCCCCC
Q psy15061 47 SDYNPTCELCRKDLAA--ENCIR-LTCYHVYHWSCLNHYARQ--L-PSTTAPAGYKCPQCKT 102 (226)
Q Consensus 47 sDyd~~C~IC~~~L~~--gd~vR-L~C~HvFH~~CLd~wl~~--~-p~nTapag~~CP~C~~ 102 (226)
++-+..|.+|.....+ ++.+. -.|.-.||..|++.-+.. . |. +...||.|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~----~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSD----EKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSS----CCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCC----CCEECCCCcC
Confidence 3456789999987433 33333 389999999999864322 1 21 3578999854
No 124
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.72 E-value=5.3 Score=30.17 Aligned_cols=39 Identities=28% Similarity=0.614 Sum_probs=26.9
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.|..|.+.+..++.+.-.=+.+||.+| |+|-.|+++|.+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 48 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC----------------FKCAACQKHFSV 48 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT----------------CBCTTTCCBCCT
T ss_pred cccCCCCeecCCceEEEECCccccccc----------------CccccCCCCCCC
Confidence 799999888765533223367888776 358888887743
No 125
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.52 E-value=9.6 Score=26.09 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=25.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
|.+.|+-|.+.+.. ..|+ .-+..||.+| |+|-.|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~-~~v~-a~~~~wH~~C----------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 4 GSSGCDSCEKYITG-RVLE-AGEKHYHPSC----------------ALCVRCGQMFAE 43 (73)
T ss_dssp SCCSCSSSCCCCSS-CCBC-CSSCCBCTTT----------------SCCSSSCCCCCS
T ss_pred CcCCcccCCCEecC-eeEE-eCCCCCCCCc----------------CEeCCCCCCCCC
Confidence 56778888887754 3332 3456777666 347777777653
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.46 E-value=4.9 Score=37.35 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=39.6
Q ss_pred CcCccccccccCCCcee-ecCCCc--cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHV--YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPV 114 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~Hv--FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spv 114 (226)
-.|++=...|.. .+| ..|.|+ |-.+=+-++..+.+ ..+||+|.+.+-+..-.....
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~------~W~CPIC~k~~~~~dL~ID~~ 308 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIP------TWQCPVCQIDIALENLAISEF 308 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSC------CCBCTTTCCBCCGGGEEEBHH
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCC------ceeCCCCCcccCHHHeeEcHH
Confidence 678877666643 788 589998 88777777766543 478999999887654444443
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.93 E-value=2.5 Score=36.81 Aligned_cols=46 Identities=24% Similarity=0.699 Sum_probs=28.7
Q ss_pred cCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCC--CCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAG--YKCPQCKT 102 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag--~~CP~C~~ 102 (226)
.|.+|...=..++.+- =.|.-.||..||+.=|... |.| ..||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~v-----P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSV-----PSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSC-----CSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccC-----CCCCCCCCcCCcC
Confidence 6889987533333332 2799999999998655443 445 78999964
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.34 E-value=5.5 Score=28.27 Aligned_cols=40 Identities=18% Similarity=0.452 Sum_probs=27.8
Q ss_pred CCCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 48 DYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 48 Dyd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.+.|..|.+.+. ++.|. .-+..||.+|+ +|-.|+++|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~-a~~~~~H~~CF----------------~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLV-ALGKSWHPEEF----------------NCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEE-ETTEEECTTTC----------------BCSSSCCBCS
T ss_pred CCCCCCccCCCEec-ceEEE-ECCccccccCC----------------ccCCCCCCCC
Confidence 45688899988884 44443 34678887663 5888887775
No 129
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.88 E-value=5.8 Score=27.46 Aligned_cols=40 Identities=23% Similarity=0.599 Sum_probs=25.9
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
|.+.|..|.+.+. ++.|+ .-+..||.+|+ +|-.|+++|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~-a~~~~wH~~CF----------------~C~~C~~~L~~ 53 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVS-ALGKTYHPDCF----------------VCAVCRLPFPP 53 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEE-ETTEEECTTTS----------------SCSSSCCCCCS
T ss_pred hCCcCccccCEec-cceEE-ECCceeCccCC----------------ccccCCCCCCC
Confidence 4568888888876 44443 33567776663 47777776653
No 130
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.72 E-value=6.1 Score=26.51 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=14.6
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHH
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSC 78 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~C 78 (226)
+.+.|..|.+.+. ++.|+ .=+..||.+|
T Consensus 4 ~~~~C~~C~~~I~-~~~~~-a~~~~~H~~C 31 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIK-AMNNSWHPEC 31 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEE-ETTEEECTTT
T ss_pred CCCcCccCCCEec-ceEEE-ECcccccccC
Confidence 4456666666664 33332 2245566555
No 131
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.37 E-value=5.9 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.578 Sum_probs=26.1
Q ss_pred CCCcCccccccccC-CCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA-ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~-gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|.+.|..|.+.+.. +.+++. =+..||.+| |+|-.|+++|-
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a-~~~~~H~~C----------------F~C~~C~~~L~ 54 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFY-EDRHFHEGC----------------FRCCRCQRSLA 54 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCC-SSCCCBTTT----------------SBCTTTCCBCS
T ss_pred cCCcCccCCCccccCcEEEEe-CCccccccC----------------CeecCCCCccC
Confidence 45788888888873 334432 356777665 35888877664
No 132
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.11 E-value=4.2 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHH
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCL 79 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CL 79 (226)
+.+.|..|.+.+..|+.+...=+..||.+|+
T Consensus 65 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 95 (101)
T 2cup_A 65 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 95 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEESSSCEEETTTC
T ss_pred cCCccccCCCccccCCeEEEeCCcchHHhCC
Confidence 5689999999998776444445778887663
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=57.90 E-value=0.73 Score=31.76 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=30.1
Q ss_pred CCCcCccccccccCCCceee-c--CC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRL-T--CY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL-~--C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-...| ||.+.- .|+.|.= . |. .-||..|+. |...|. +.+.||.|..
T Consensus 9 e~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~----g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCC----CCEECcCccC
Confidence 34556 898873 4654432 4 65 789999998 444332 4688999854
No 134
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=56.11 E-value=5 Score=27.39 Aligned_cols=41 Identities=17% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCCcCccccccccC---CCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAA---ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~---gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|.+.|+.|.+.+.. ++.+...=+..||.+| |+|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C----------------F~C~~C~~~L~ 57 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC----------------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTT----------------CBCSSSCCBCT
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCccc----------------CEehhcCCCCC
Confidence 46889999999974 2222223367888776 35999988875
No 135
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.52 E-value=8 Score=26.94 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|..|.+.+. +..|+ .-+..||.+| |+|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~-a~~~~~H~~C----------------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI-FKNDPYHPDH----------------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC-CSSSCCCTTT----------------SBCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceEEE-ECcceeCCCC----------------CEeCCCCCccC
Confidence 4577888888776 44333 2356677655 34777777665
No 136
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.38 E-value=4.5 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.568 Sum_probs=22.6
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|..|.+.+.. +.|+ .-+..||.+| |+|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 42 (70)
T 2d8z_A 4 GSSGCVQCKKPITT-GGVT-YREQPWHKEC----------------FVCTACRKQLS 42 (70)
T ss_dssp CCCBCSSSCCBCCS-SEEE-SSSSEEETTT----------------SBCSSSCCBCT
T ss_pred CCCCCcccCCeecc-ceEE-ECccccCCCC----------------CccCCCCCcCC
Confidence 45677777777753 3332 2355666655 34777776653
No 137
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.98 E-value=6.7 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|..|.+.+.. +.|+ .=+..||.+|+ +|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~-a~~~~~H~~CF----------------~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITS-GGIT-YQDQPWHADCF----------------VCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCT-TCEE-ETTEEECTTTT----------------BCTTTCCBCT
T ss_pred CcCCCcccCCEeCc-ceEE-ECccccccCcC----------------EECCCCCCCC
Confidence 45677777777753 3333 23556676553 4777776664
No 138
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.81 E-value=8.1 Score=35.72 Aligned_cols=56 Identities=20% Similarity=0.413 Sum_probs=40.0
Q ss_pred CcCccccccccCCCcee-ecCCCc--cCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHV--YHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVSPV 114 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~Hv--FH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~n~~Spv 114 (226)
-.|++=...|.. .+| ..|.|+ |-.+=+-++.++.+ ..+||+|++.+.+..-.....
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~------~W~CPiC~k~~~~~dL~ID~~ 274 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKP------TWICPVCDKKAAYESLILDGL 274 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSC------CCBCTTTCSBCCGGGEEEBHH
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCC------CeECCCCCcccCHHHeEEcHH
Confidence 467777666643 788 589998 88887777776643 478999999887755444443
No 139
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=53.94 E-value=0.99 Score=31.08 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=30.8
Q ss_pred CCCCCCcCccccccccCCCceee-c--CC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 46 DSDYNPTCELCRKDLAAENCIRL-T--CY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 46 DsDyd~~C~IC~~~L~~gd~vRL-~--C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
|.+-...| +|.+.- .|+.|.= . |. .-||.+|+. |...|. +.+.||.|..
T Consensus 5 d~~e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~----~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPK----GKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCC----CCEECcCccC
Confidence 33344567 899874 4654442 5 76 799999998 443332 4589999854
No 140
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.93 E-value=9.6 Score=27.07 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=34.6
Q ss_pred CcCccccccccC-CCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAA-ENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~-gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
..| ||..+.++ +..|. -.|..=||..|+.--..... .+..|.||.|...--|
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTTTTTTSCS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCCcccccCC
Confidence 445 99998753 44455 37999999999964333211 1357999999875443
No 141
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=53.46 E-value=3.8 Score=24.58 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=21.4
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHH
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCL 79 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CL 79 (226)
+.+.|+.|.+..-..+.+. .=|.+||..|+
T Consensus 2 m~~~C~~C~k~Vy~~Ek~~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKVN-CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGGGCCC-SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecceeEE-ECCeEecccCC
Confidence 3568999999886654332 34789999884
No 142
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.19 E-value=6.2 Score=27.72 Aligned_cols=40 Identities=30% Similarity=0.753 Sum_probs=28.1
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.|..|.+.+..++.|. .=+.+||.+|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~-a~~~~wH~~CF----------------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC-VNGHFFHRSCF----------------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC-BTTBCCBTTTC----------------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEE-ECCCeeCCCcC----------------EEcCCCCCcCC
Confidence 478999999887776554 33667887773 57788776643
No 143
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=52.08 E-value=5.3 Score=31.69 Aligned_cols=41 Identities=27% Similarity=0.648 Sum_probs=32.5
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.|..|.+.+..++.+...=+..||.+|+ +|-.|+++|-.
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF----------------~C~~C~~~L~~ 105 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCF----------------ACVVCKRQLAT 105 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGC----------------BCTTTCCBCCT
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCC----------------cCCCCCCCCCC
Confidence 589999999987777554456789999884 59999998754
No 144
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=51.78 E-value=7.5 Score=31.17 Aligned_cols=42 Identities=26% Similarity=0.673 Sum_probs=29.4
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
|.+.|..|.+.+..++.+...=+..||.+|+ +|-.|+++|..
T Consensus 118 f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF----------------~C~~C~~~L~~ 159 (182)
T 2jtn_A 118 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCF----------------ACVVCKRQLAT 159 (182)
T ss_dssp TSCCCTTTCCCCCSSCCCCEETTEECCTTTC----------------CCTTTCCCCCT
T ss_pred cccccccCCCccCCCceEEecCCCCEEeCCC----------------cCCCCCCCCCC
Confidence 4578888888887665443344677887764 59999988754
No 145
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=51.77 E-value=2.8 Score=27.74 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=33.2
Q ss_pred CCCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
+|..=-||..+...+..|. -.|.-=||.+|+.--.. .+|..|.||.|+.
T Consensus 2 ~d~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-----~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKS-----NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGG-----GCCSSCCCHHHHT
T ss_pred CcCeEEEeCCcCCCCCEEEcCCCCccccccccCCCcc-----cCCCcEECcCCCC
Confidence 3444457888765445555 37999999999964322 2456899999964
No 146
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.92 E-value=5 Score=30.91 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=28.4
Q ss_pred CCcCccccccccCCCceee---cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRL---TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL---~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
+..|.+|.. .|+.|-= .|--.||..||. |...|. +...||.|.
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~----g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPY----GKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCS----SCCCCGGGB
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCC----CCEECCCCC
Confidence 467999983 4554442 488999999998 444332 246688553
No 147
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.19 E-value=0.96 Score=33.70 Aligned_cols=48 Identities=23% Similarity=0.594 Sum_probs=32.3
Q ss_pred CCcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
+..|.||...=..+..|. =.|.-.||..||+.=+...|. ....||.|.
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~----g~W~C~~C~ 64 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR----GIWRCPKCI 64 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCS----SCCCCHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCC----CCcCCccCc
Confidence 357999987643332222 279999999999865544432 357899994
No 148
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=48.95 E-value=16 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 94 GYKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 94 g~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
..+||.|...-+-.+ .+++|..||..+.
T Consensus 23 ~LRCpvCqnqsI~dS--nA~iA~dlR~~Vr 50 (90)
T 2kw0_A 23 ELRCPKCQNNSIADS--NSMIATDLRQKVY 50 (90)
T ss_dssp SSBCSCTTSCTTTSC--CCHHHHHHHHHHH
T ss_pred cCcCCCCCCCchhhc--CcHHHHHHHHHHH
Confidence 468999987655444 5799999887773
No 149
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.74 E-value=8.4 Score=27.35 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=25.8
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.|..|.+.+..++.|+ .-+.+||.+|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~-a~~~~~H~~CF----------------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL-ANQQVFHISCF----------------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE-CSSSEEETTTC----------------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE-ECCCEECCCCC----------------eeCCCCCCCCC
Confidence 467888888876666543 44567776663 47777766543
No 150
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=46.79 E-value=5 Score=26.71 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q psy15061 91 APAGYKCPQCKTG 103 (226)
Q Consensus 91 apag~~CP~C~~~ 103 (226)
.|..+.||+|+.+
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4678999999863
No 151
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=46.73 E-value=10 Score=23.31 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=19.8
Q ss_pred cccccceeeecccccccccc-CCCC
Q psy15061 10 KVTNQFCYEHRVNVCEYCMV-TNHP 33 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v-~~H~ 33 (226)
+.-.+||-+....||..|.. .+|.
T Consensus 11 e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 11 ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 45678999999999999986 6664
No 152
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.72 E-value=15 Score=26.02 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=31.2
Q ss_pred CCCcCccccccc-cCCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDL-AAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 49 yd~~C~IC~~~L-~~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
.+..|.||...- .+++.+.+ .|.-.||..|+..- ..|. +...||.|.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~----g~W~C~~C~ 64 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPE----GQWLCRHCL 64 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCS----SCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCC----CCcCCccCc
Confidence 467899998763 22333443 79999999999742 1221 357788884
No 153
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=46.43 E-value=5 Score=26.83 Aligned_cols=39 Identities=21% Similarity=0.568 Sum_probs=27.2
Q ss_pred CCcCccccccccCC-CceeecCCCccC--HHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAE-NCIRLTCYHVYH--WSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~g-d~vRL~C~HvFH--~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.|..|.+.+..+ ..|+ .-+..|| .+| |+|-.|+++|.
T Consensus 2 a~~C~~C~~~I~~~~~~v~-a~~~~wH~~~~C----------------F~C~~C~~~L~ 43 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVT-YNNFSWHASTEC----------------FLCSCCSKCLI 43 (65)
T ss_dssp CEECTTTSSEECTTSCEEE-ETTEEEETTTTT----------------SBCTTTCCBCT
T ss_pred cCCCcCCCCeeccCceEEE-ECCCccCCCCCC----------------EECCCCCCcCC
Confidence 46789999998764 3443 3367788 766 35888888774
No 154
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.06 E-value=5.6 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCcCcccccccc----CCC---cee-ecCCCccCHHHHHHH
Q psy15061 50 NPTCELCRKDLA----AEN---CIR-LTCYHVYHWSCLNHY 82 (226)
Q Consensus 50 d~~C~IC~~~L~----~gd---~vR-L~C~HvFH~~CLd~w 82 (226)
++.|.+|++.-. .|+ .|. -.|+-.||..||+..
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 357999987642 232 333 379999999999754
No 155
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=43.99 E-value=3.8 Score=32.74 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=32.8
Q ss_pred CCCcCccccccccCC-Ccee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAE-NCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102 (226)
Q Consensus 49 yd~~C~IC~~~L~~g-d~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~ 102 (226)
-...| +|..+..++ ..|. =.|.-.||..|+.--.... ..+..|.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEA---ELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH---TTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhc---cCccCeecCCCcc
Confidence 34668 999886543 3343 3799999999995322210 0135799999975
No 156
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.83 E-value=9.1 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=30.5
Q ss_pred CCCcCccccccccCCCceeecCCCccC--HHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYH--WSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH--~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
|.+.|..|.+.+..++.+...-+..|| .+| |+|-.|+++|.
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~C----------------F~C~~C~~~l~ 104 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTEC----------------FLCSCCSKCLI 104 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEETTEEEESSTTT----------------SBCTTTCCBCT
T ss_pred cCccCcccCCcCCcCceEEECCCCEeeCCCCC----------------cCcCCCCCccC
Confidence 468999999999875544445577888 655 56999988774
No 157
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=43.02 E-value=43 Score=25.49 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=36.9
Q ss_pred CCcCccccccc---cCCCcee--ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDL---AAENCIR--LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L---~~gd~vR--L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
.+.|.||.+.+ .+|++.. -.|+=-.-..|++.-.+... -.||.|+++.-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~-------q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT-------QNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC-------SSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC-------ccccccCCccc
Confidence 48999999986 3466533 47888889999988777633 36999998874
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=42.44 E-value=9.6 Score=29.14 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|..|.+.+..+..++ .-+..||.+| |+|-.|+++|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~-a~~~~wH~~C----------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY-AMDSYWHSRC----------------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE-ETTEEEETTT----------------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEE-eCCcEEcccc----------------cCcCcCCCccc
Confidence 3578999999997654343 3467888877 36999998875
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=41.43 E-value=11 Score=26.63 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=31.6
Q ss_pred CcCccccccccCC-Ccee-ecCCCccCHHHHHHHHHhCCCCCCC--CCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAE-NCIR-LTCYHVYHWSCLNHYARQLPSTTAP--AGYKCPQCKTG 103 (226)
Q Consensus 51 ~~C~IC~~~L~~g-d~vR-L~C~HvFH~~CLd~wl~~~p~nTap--ag~~CP~C~~~ 103 (226)
+.--||..+...+ ..|. -.|.-=||.+|+.-- ...++ ..|.||.|...
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~-----~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVE-----EEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCC-----TTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEeccccccc-----ccccCCCCEEECCCCccc
Confidence 4445898876533 3444 379999999999532 22222 46999999654
No 160
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=40.99 E-value=3.3 Score=27.41 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=30.1
Q ss_pred cCccccccccCCC-cee-e-cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAEN-CIR-L-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 52 ~C~IC~~~L~~gd-~vR-L-~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
.|.+|..+..+++ -|. - .|.-=||..|+.--..... +..|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~----~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAE----NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHH----HSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccC----CCCEECCCCC
Confidence 3788999886554 344 3 5888999999864332110 1468999995
No 161
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=40.98 E-value=15 Score=25.59 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=32.1
Q ss_pred CCCCCcCccccccccCCC-cee-e-cCCCccCHHHHHHHH------HhCCCCCCCCCCCCCCCC
Q psy15061 47 SDYNPTCELCRKDLAAEN-CIR-L-TCYHVYHWSCLNHYA------RQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 47 sDyd~~C~IC~~~L~~gd-~vR-L-~C~HvFH~~CLd~wl------~~~p~nTapag~~CP~C~ 101 (226)
++-...|++|..+..+++ -|. - .|.--||..|..--. ...+. +.|.||.|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~----~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEAS----AVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTT----EEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCC----CcEECcCcc
Confidence 344578999999987654 333 3 799999999975322 11121 358898884
No 162
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.96 E-value=17 Score=24.79 Aligned_cols=38 Identities=32% Similarity=0.747 Sum_probs=23.1
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
+.+.|..|.+.+.. +.|+ .=+..||.+|+ +|-.|+++|
T Consensus 14 ~~~~C~~C~~~I~~-~~v~-a~~~~~H~~CF----------------~C~~C~~~L 51 (80)
T 2cuq_A 14 FAPRCARCSKTLTQ-GGVT-YRDQPWHRECL----------------VCTGCQTPL 51 (80)
T ss_dssp SSCCCTTTCCCCCS-CCEE-SSSSEECTTTC----------------BCSSSCCBC
T ss_pred cCCcCCCCCCEecC-cEEE-ECCchhhhhhC----------------CcccCCCcC
Confidence 35677777777754 3332 33566776553 477777766
No 163
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.35 E-value=16 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=32.3
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPN 108 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P~~ 108 (226)
-.|..|...|.. ...-..=+-+|...|..+.+. .+|..|+++|.+..
T Consensus 31 F~C~~C~~~L~~-~~f~~~~g~~yC~~cy~~~~~----------~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAG-EIYVMVNDKPVCKPCYVKNHA----------VVCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTT-SEEEEETTEEEEHHHHHHHSC----------CBCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCc-CEEEeECCEEechHHhCcCcC----------ccCcccCCcCCcCc
Confidence 578889999864 333334466777777765432 36999999999744
No 164
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.11 E-value=8.2 Score=28.90 Aligned_cols=39 Identities=28% Similarity=0.631 Sum_probs=29.1
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.|..|.+.+..++.+...=+..||.+| |+|-.|+++|-+
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~C----------------F~C~~C~~~L~~ 106 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLEC----------------FKCAACQKHFCV 106 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGG----------------CBCTTTCCBCCT
T ss_pred ChhhcCCccCccceeEeeCCceECccC----------------cccCCCCCCCCC
Confidence 899999998765644334578899877 359999988754
No 165
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.89 E-value=23 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.567 Sum_probs=27.0
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
....|..|.+.+.. ..++ .-+.+||.+| |+|-.|+++|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK-ARDKYRHPEC----------------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE-SSSCEECTTT----------------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE-ECCceECccC----------------CEecCCCCCCCC
Confidence 35778888888864 4333 3457888776 358888887754
No 166
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=39.83 E-value=7.2 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=33.3
Q ss_pred CCcCccccccccCCCceeecCC-CccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCY-HVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~-HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
-.+|-.|-...+. -+.|. |.+-..||...|... -.||+|++++-
T Consensus 28 ~~nCKsCWf~~k~----LV~C~dHYLCl~CLtlmL~~S--------drCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKG----LVECNNHYLCLNCLTLLLSVS--------NRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSS----EEECSSCEEEHHHHHHTCSSS--------SEETTTTEECC
T ss_pred cccChhhccccCC----eeeecchhhHHHHHHHHHhhc--------cCCcccCCcCC
Confidence 3789999876532 23455 999999999999863 46999998764
No 167
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.54 E-value=2.4 Score=31.19 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=32.9
Q ss_pred CCcCccccccccC-CCceee--cCCCccCHHHHHHHHHh----CCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAA-ENCIRL--TCYHVYHWSCLNHYARQ----LPSTTAPAGYKCPQCK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~-gd~vRL--~C~HvFH~~CLd~wl~~----~p~nTapag~~CP~C~ 101 (226)
+..|.+|...-.. ++.+.+ .|...||..|++.-|.. .|. ....|+.|.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~----g~W~C~~C~ 70 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPR----LVWYCARCT 70 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTT----CCCCCHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCC----CCeeCcccc
Confidence 5789999976432 233443 79999999999865542 222 357899994
No 168
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.53 E-value=16 Score=25.13 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=24.9
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I 104 (226)
.+.|..|.+.+.. +.|+ .-+.+||.+|+ +|-.|+++|
T Consensus 15 ~~~C~~C~~~I~~-~~~~-a~~~~~H~~CF----------------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVK-LRDRHRHPECY----------------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-SCEE-CSSCEECTTTT----------------SCSSSCCCH
T ss_pred CCccccCCCCccC-cEEE-ECcceeCcCcC----------------eeCCCCCCC
Confidence 4778888888764 3332 34678887764 488887765
No 169
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.01 E-value=14 Score=25.47 Aligned_cols=39 Identities=26% Similarity=0.654 Sum_probs=24.2
Q ss_pred CCCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 49 yd~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~ 105 (226)
+.+.|+.|.+.+. +..++ .-+..||.+| |+|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPIL-DRILR-AMGKAYHPGC----------------FTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCC-SCCEE-ETTEEECTTT----------------CBCSSSCCBCT
T ss_pred CCCccccCCCeec-ceeEE-ECCccccHHh----------------cCcccCCCccC
Confidence 3567888888776 33332 3356777665 34777877664
No 170
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.85 E-value=16 Score=24.94 Aligned_cols=39 Identities=26% Similarity=0.655 Sum_probs=21.9
Q ss_pred CCcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.+.|..|.+.+.. +.|+ .=+..||.+| |+|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~-~~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS-AMDTVWHPEC----------------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE-ETTEEECTTT----------------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEE-ECCCeEecCc----------------CChhhCCCCCCC
Confidence 4567777777654 3332 2245666555 347777766643
No 171
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=37.12 E-value=12 Score=30.20 Aligned_cols=39 Identities=28% Similarity=0.802 Sum_probs=29.4
Q ss_pred cCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 52 ~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
.|..|.+.+..++.+.-.-+.+||.+| |+|-.|+++|..
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~C----------------F~C~~C~~~L~~ 109 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKC----------------FTCSTCRNRLVP 109 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGG----------------CBCTTTCCBCCT
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCC----------------CeECCCCCCCCC
Confidence 699999998766644334578999888 359999887754
No 172
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=37.10 E-value=24 Score=26.09 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHhh
Q psy15061 95 YKCPQCKTGLFPPNNLVSPVADVLREKLS 123 (226)
Q Consensus 95 ~~CP~C~~~I~P~~n~~Spva~~Lre~la 123 (226)
.+||.|...-+-.+ .+++|..||..+.
T Consensus 27 LRCp~Cqnqsi~dS--na~iA~dlR~~V~ 53 (84)
T 2hl7_A 27 LRCPKCQNQDIADS--NAPIAADLRKQIY 53 (84)
T ss_dssp EECTTSSSCBTTTC--CSHHHHHHHHHHH
T ss_pred CcCCCCCCCchhhc--CcHHHHHHHHHHH
Confidence 57999987665434 5799999987774
No 173
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.07 E-value=3.4 Score=29.00 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=35.5
Q ss_pred CCcCccccccccCCC-cee-ecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 50 NPTCELCRKDLAAEN-CIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 50 d~~C~IC~~~L~~gd-~vR-L~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
...| +|..+..+|+ .|. =.|.-=||..|+.--.. ...|..|.||.|+..-.|
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~----~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNA----DALPSKFLCFRCIELSGP 69 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTT----SCCCSCCCCHHHHHHCSS
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcc----ccCCCcEECCCccCCCCC
Confidence 3568 7998876664 444 37999999999864321 113567999999764444
No 174
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=36.28 E-value=6.9 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=21.6
Q ss_pred cccccceeeeccccccccccCCCCcce
Q psy15061 10 KVTNQFCYEHRVNVCEYCMVTNHPKCI 36 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v~~H~~Cv 36 (226)
+.-++||-+-...||..|.+.+|..-.
T Consensus 15 e~l~lfC~~~~~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 15 EPLVLFCESCDTLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp CBCCEEETTTTEEECHHHHHTTTTTCC
T ss_pred CCEEEEeCCCCEEEecccCCCcCCCCc
Confidence 556789999999999999877775433
No 175
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=35.97 E-value=22 Score=26.05 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=32.0
Q ss_pred CCCcCcccccccc-CCCceee--cCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy15061 49 YNPTCELCRKDLA-AENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103 (226)
Q Consensus 49 yd~~C~IC~~~L~-~gd~vRL--~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~ 103 (226)
-+..|.||...-. +++.+.+ .|.-.||..|+..-+ .|. +...||.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~----g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCS----SCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCC----CceECccccCc
Confidence 3578999987632 2223333 799999999997531 221 35789999543
No 176
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=34.92 E-value=5.8 Score=29.69 Aligned_cols=44 Identities=23% Similarity=0.610 Sum_probs=28.3
Q ss_pred CCcCccccccccCCCceee-cC--C-CccCHHHHHHHHHhCCCCCCCCCCCCCC-CC
Q psy15061 50 NPTCELCRKDLAAENCIRL-TC--Y-HVYHWSCLNHYARQLPSTTAPAGYKCPQ-CK 101 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL-~C--~-HvFH~~CLd~wl~~~p~nTapag~~CP~-C~ 101 (226)
...| ||...- .|+.|.= .| . --||..|+. |...|. ..+.||. |.
T Consensus 26 ~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~----~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG--LKQAPK----GKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS--CSSCTT----SCCCSSHHHH
T ss_pred CcEE-EeCCCC-CCCEEEecCCCCccccCcCccCC--CCcCCC----CCccCChhhc
Confidence 4567 999863 4654432 44 4 689999997 333221 3589999 84
No 177
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.35 E-value=24 Score=23.92 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCC
Q psy15061 94 GYKCPQCKTGLFP 106 (226)
Q Consensus 94 g~~CP~C~~~I~P 106 (226)
|.+||.|+-.|+-
T Consensus 23 ~IrCpyCGyrii~ 35 (48)
T 4ayb_P 23 GVRCPYCGYKIIF 35 (48)
T ss_dssp SSCCTTTCCSCEE
T ss_pred CcccCccCcEEEE
Confidence 5789999988874
No 178
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=22 Score=26.31 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=17.0
Q ss_pred CcCccccccccC-CCceeecCCCccCHHHHHHHHH
Q psy15061 51 PTCELCRKDLAA-ENCIRLTCYHVYHWSCLNHYAR 84 (226)
Q Consensus 51 ~~C~IC~~~L~~-gd~vRL~C~HvFH~~CLd~wl~ 84 (226)
-.|..|...|.+ |...-..=+-+|-..|..+.+.
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 456666666653 3322222244555566555543
No 179
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=32.20 E-value=15 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=22.5
Q ss_pred cccccceeeeccccccccccCCCCcceee
Q psy15061 10 KVTNQFCYEHRVNVCEYCMVTNHPKCIVQ 38 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v~~H~~CvVq 38 (226)
+.-++||-+....||..|.+.+|..-.+.
T Consensus 26 e~l~lfC~~d~~~iC~~C~~~~H~~H~~~ 54 (72)
T 2csv_A 26 KTMELFCQTDQTCICYLCMFQEHKNHSTV 54 (72)
T ss_dssp CBCCEEESSSCCEECHHHHHTTTSSSCEE
T ss_pred CceEEEeCCCCeEEccccCCCCCCCCCEe
Confidence 45578999999999999987777654443
No 180
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.85 E-value=12 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.5
Q ss_pred cccccceeeecccccccccc-CCCCcc
Q psy15061 10 KVTNQFCYEHRVNVCEYCMV-TNHPKC 35 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v-~~H~~C 35 (226)
+.-.+||-+....||..|.. .+|..-
T Consensus 22 e~L~lfC~~d~~~iC~~C~~s~eH~~H 48 (59)
T 2yrg_A 22 EKLLLFCQEDGKVICWLCERSQEHRGH 48 (59)
T ss_dssp CBCCEEETTTCSEECHHHHTSTTTTTC
T ss_pred ceeeeecCCCCcEEecccCCCCcCCCC
Confidence 45678999999999999975 666543
No 181
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.33 E-value=16 Score=25.73 Aligned_cols=43 Identities=21% Similarity=0.642 Sum_probs=28.2
Q ss_pred CcCccccccccCCCcee-ecC---CCccCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTC---YHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C---~HvFH~~CLd~wl~~~p~nTapag~~CP~C~ 101 (226)
..| +|... ..|+.|. -.| ..-||.+|+. |...| ...|.||.|.
T Consensus 7 ~yC-~C~~~-~~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p----~~~w~Cp~C~ 53 (70)
T 1x4i_A 7 GYC-ICNQV-SYGEMVGCDNQDCPIEWFHYGCVG--LTEAP----KGKWYCPQCT 53 (70)
T ss_dssp CCS-TTSCC-CCSSEECCSCTTCSCCCEEHHHHT--CSSCC----SSCCCCHHHH
T ss_pred eEE-EcCCC-CCCCEeEeCCCCCCccCCcccccc--cCcCC----CCCEECCCCC
Confidence 446 58887 4565454 344 4789999998 33322 2468899995
No 182
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.66 E-value=29 Score=25.34 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=22.6
Q ss_pred cCCCccCHHHH---HHH---HHhCCCCCCCCCCCCCCCCCCCC
Q psy15061 69 TCYHVYHWSCL---NHY---ARQLPSTTAPAGYKCPQCKTGLF 105 (226)
Q Consensus 69 ~C~HvFH~~CL---d~w---l~~~p~nTapag~~CP~C~~~I~ 105 (226)
.|.+-||..|+ +++ +..+|. ...|.||.|...-.
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~---~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPE---SVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCT---TTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccc---cceeeCcccccccc
Confidence 48899999996 333 344432 23699999976443
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=29.14 E-value=8.8 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=15.3
Q ss_pred CCcCccccccccCCCceeecCCCccCHHH
Q psy15061 50 NPTCELCRKDLAAENCIRLTCYHVYHWSC 78 (226)
Q Consensus 50 d~~C~IC~~~L~~gd~vRL~C~HvFH~~C 78 (226)
.+.|..|.+.+..++.|+. -+..||.+|
T Consensus 7 ~~~C~~C~~~I~~~~~~~a-~~~~~H~~C 34 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC-DGRSFHRCC 34 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE-TTEEEESSS
T ss_pred CCcCcCcCccccCceeEEe-CCccccccc
Confidence 4567777776655554432 345566554
No 184
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.70 E-value=16 Score=22.05 Aligned_cols=11 Identities=27% Similarity=1.035 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q psy15061 93 AGYKCPQCKTG 103 (226)
Q Consensus 93 ag~~CP~C~~~ 103 (226)
+-++||+|+..
T Consensus 2 ~k~~CpvCk~q 12 (28)
T 2jvx_A 2 SDFCCPKCQYQ 12 (28)
T ss_dssp CCEECTTSSCE
T ss_pred CcccCcccccc
Confidence 46789999864
No 185
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=26.20 E-value=22 Score=22.47 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=21.2
Q ss_pred cccccceeeeccccccccc-cCCCCcce
Q psy15061 10 KVTNQFCYEHRVNVCEYCM-VTNHPKCI 36 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~-v~~H~~Cv 36 (226)
+..++||-+-+..||..|. ...|..-.
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccccEEcCCCCeeEcccccCCCcCCCCc
Confidence 3578999999999999996 55675433
No 186
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=24.64 E-value=23 Score=22.74 Aligned_cols=28 Identities=32% Similarity=0.721 Sum_probs=21.4
Q ss_pred cccccceeeecccccccccc-CCCCccee
Q psy15061 10 KVTNQFCYEHRVNVCEYCMV-TNHPKCIV 37 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v-~~H~~CvV 37 (226)
+.-.+||-+....||..|.+ .+|..-.+
T Consensus 16 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 16 EALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp CBCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred CeeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 45578999999999999985 67754433
No 187
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.61 E-value=22 Score=28.55 Aligned_cols=39 Identities=23% Similarity=0.576 Sum_probs=28.3
Q ss_pred CcCccccccccCCCceeecCCCccCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vRL~C~HvFH~~CLd~wl~~~p~nTapag~~CP~C~~~I~P 106 (226)
+.|..|.+.+..++.|. .=+..||.+| |+|-.|+++|-.
T Consensus 116 ~~C~~C~~~I~~~~~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVI-GAGKSWHKSC----------------FRCAKCGKSLES 154 (192)
T ss_dssp EECTTTSCEECSSSCEE-ETTEEECTTT----------------CBCTTTCCBCCS
T ss_pred CcCCCCCCEecCcEEEe-cCCCccchhc----------------CCccccCCCCCC
Confidence 46999999987776554 3467788766 358888887754
No 188
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=23.26 E-value=83 Score=22.99 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=31.7
Q ss_pred ehhhccCC-CCCCcCccccccccCCC---cee-ecCCCccCHHHHHHH
Q psy15061 40 YLQWLEDS-DYNPTCELCRKDLAAEN---CIR-LTCYHVYHWSCLNHY 82 (226)
Q Consensus 40 YlqWL~Ds-Dyd~~C~IC~~~L~~gd---~vR-L~C~HvFH~~CLd~w 82 (226)
.-+|++.. .....|.+|.+...... -.| +-|+=.+|.+|+++.
T Consensus 27 ~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 27 PHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred eeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 45677764 33579999999865422 355 689999999999876
No 189
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.22 E-value=31 Score=24.69 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=27.7
Q ss_pred hhhccCCCCCCcCccccccccCCCcee----ecCCCccCHHHHHHH
Q psy15061 41 LQWLEDSDYNPTCELCRKDLAAENCIR----LTCYHVYHWSCLNHY 82 (226)
Q Consensus 41 lqWL~DsDyd~~C~IC~~~L~~gd~vR----L~C~HvFH~~CLd~w 82 (226)
..|+.|.+ ...|.+|...|.- ..| -.||.+|=..|....
T Consensus 6 ~~W~pd~~-~~~C~~C~~~F~~--~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 6 SGRYPTNN-FGNCTGCSATFSV--LKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSCSCCC-CSSCSSSCCCCCS--SSCCEECSSSCCEECTTTSCEE
T ss_pred CccccCCC-CCcCcCcCCcccc--chhhhhhcCCCcEEChhhcCCc
Confidence 46888853 4689999999843 233 379999988775543
No 190
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.73 E-value=15 Score=27.13 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCC
Q psy15061 94 GYKCPQCKTGLFP 106 (226)
Q Consensus 94 g~~CP~C~~~I~P 106 (226)
|-.||+|+.++-+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5579999998875
No 191
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.53 E-value=41 Score=31.28 Aligned_cols=56 Identities=25% Similarity=0.549 Sum_probs=36.6
Q ss_pred ccCCC-CCCcCccccccccCCCcee-e--cCCCccCHHHHHHHHHhCCCC--CCCCCCCCCCCCC
Q psy15061 44 LEDSD-YNPTCELCRKDLAAENCIR-L--TCYHVYHWSCLNHYARQLPST--TAPAGYKCPQCKT 102 (226)
Q Consensus 44 L~DsD-yd~~C~IC~~~L~~gd~vR-L--~C~HvFH~~CLd~wl~~~p~n--Tapag~~CP~C~~ 102 (226)
..|.| |+..|.+|-+. |+.+- = .|..+|=.+||+..+...-.. .+...-.|=.|.-
T Consensus 86 ~~D~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 86 LYDDDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CBCSSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred ccCCCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45554 78999999863 44332 2 799999999999987321000 0124678999964
No 192
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.76 E-value=41 Score=22.80 Aligned_cols=13 Identities=46% Similarity=1.247 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q psy15061 91 APAGYKCPQCKTG 103 (226)
Q Consensus 91 apag~~CP~C~~~ 103 (226)
.|..+.||.|+.+
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 4678999999864
No 193
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.19 E-value=35 Score=23.23 Aligned_cols=12 Identities=42% Similarity=1.229 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q psy15061 92 PAGYKCPQCKTG 103 (226)
Q Consensus 92 pag~~CP~C~~~ 103 (226)
|..+.||.|+.+
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 567999999864
No 194
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.12 E-value=32 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=34.1
Q ss_pred CcCccccccccCC-Cceee--cCCCccCHHHHHHHH---HhCCCCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAE-NCIRL--TCYHVYHWSCLNHYA---RQLPSTTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~g-d~vRL--~C~HvFH~~CLd~wl---~~~p~nTapag~~CP~C~~~I~P 106 (226)
-.|.+|..++.++ +-|.= .|.-=||..|+.--. +.+.. .....|.||.|...--+
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~-~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTT-EASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHH-CTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhcc-CCCCCEECccccCcCCC
Confidence 3699999998554 33432 688999999985221 11100 01146999999765443
No 195
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.81 E-value=42 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q psy15061 91 APAGYKCPQCKTG 103 (226)
Q Consensus 91 apag~~CP~C~~~ 103 (226)
.|..+.||.|+.+
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 4678999999863
No 196
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.24 E-value=56 Score=22.67 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=33.5
Q ss_pred CcCccccccccCCCcee-ecCCCccCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCC
Q psy15061 51 PTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLP-STTAPAGYKCPQCKTGLFP 106 (226)
Q Consensus 51 ~~C~IC~~~L~~gd~vR-L~C~HvFH~~CLd~wl~~~p-~nTapag~~CP~C~~~I~P 106 (226)
..| +|..+...+..|. -.|..=||..|+.--..... ....+..|.||.|+..--|
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 446 8999876445455 37999999999853221100 0001346999999754443
No 197
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=20.18 E-value=24 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=22.4
Q ss_pred cccccceeeecccccccccc-CCCCcceee
Q psy15061 10 KVTNQFCYEHRVNVCEYCMV-TNHPKCIVQ 38 (226)
Q Consensus 10 k~T~~fCf~HrvnVCe~C~v-~~H~~CvVq 38 (226)
+.-++||-+....||..|.+ .+|..-.+.
T Consensus 27 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 27 EKVNMYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp SCCCEEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred ccccEEcCCCCceEcccCcCCCCCCCCCcc
Confidence 45678999999999999985 777554443
No 198
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.18 E-value=40 Score=22.60 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q psy15061 91 APAGYKCPQCKTG 103 (226)
Q Consensus 91 apag~~CP~C~~~ 103 (226)
.|..+.||.|+.+
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 4678999999863
Done!