RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15061
(226 letters)
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 40.1 bits (93), Expect = 3e-04
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 28 MVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLP 87
+H K + Y + E C++C ++ ++ C H+ SCL +
Sbjct: 310 TPQDHIKVTQEQYELYCEMGSTFQLCKICAEN--DKDVKIEPCGHLMCTSCLTSWQESEG 367
Query: 88 STTAPAGYKCPQCKTGLFPPNNLV 111
CP C+ + +V
Sbjct: 368 QG-------CPFCRCEIKGTEPIV 384
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 40.2 bits (93), Expect = 3e-04
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 29 VTNHPKCIVQSYLQWLEDSDYNPTCELC------RKDLAAENCIRLTCYHVYHWSCLNHY 82
+ P + E+ + C +C ++ +C C H CL +
Sbjct: 287 LCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346
Query: 83 ARQLPSTTAPAGY---KCPQCKT 102
+ L +CP CK
Sbjct: 347 FKTLMDGKTFLEVSFGQCPFCKA 369
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 54/169 (31%)
Query: 43 WLEDSDYNP---TCELCRKDLAAENCIRLTC--YHVY-------------HWSCLNHY-- 82
W + + +L + L + T +Y H S ++HY
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 83 ARQLPSTTAPA-----------GYKCPQC----KTGLFPPNNLVSPVADV--LREKL--S 123
+ S G+ + LF L D L +K+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-----DFRFLEQKIRHD 510
Query: 124 SVNWARVGLGLPLLNDE-------VEHKPS---MTSAAKSFVHTYNKSV 162
S W G L L ++ P + +A F+ +++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 35.2 bits (80), Expect = 0.017
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 193 HHHHHHPVAPVSRDHDENKYKRRSIVE 219
HHHHHH + + E++Y+ + I+
Sbjct: 1 HHHHHH----MDFETGEHQYQYKDILS 23
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 37.4 bits (86), Expect = 0.002
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 28 MVTNHPKCIVQSYLQWLED-SDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQL 86
T H + I++ E D C +C L + TC H C+ Y +
Sbjct: 157 EFTLHGRAILEMEQYIRETYPDAVKICNIC-HSLLIQGQSCETCGIRMHLPCVAKYFQSN 215
Query: 87 PSTTAPAGYKCPQCKT 102
CP C
Sbjct: 216 AEPR------CPHCND 225
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 35.2 bits (81), Expect = 0.003
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 52 TCELCRKDLAAENCIRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
C+LC + E + C ++ CL Y L CP
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 34.4 bits (79), Expect = 0.004
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 45 EDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104
E+ + C +CR+ +N + C H + SC + R P +C C
Sbjct: 10 EEEEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRATP--------RCYICDQ-- 57
Query: 105 FPPNNLVSPVADVLREKL 122
P + A L KL
Sbjct: 58 --PTGGIFNPAKELMAKL 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 32.6 bits (74), Expect = 0.013
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 48 DYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
D C +C L TC H C+ Y + CP C
Sbjct: 13 DAVKICNICHSLLIQGQSCE-TCGIRMHLPCVAKYFQSNAEPR------CPHCND 60
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 34.0 bits (77), Expect = 0.020
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 109 NLVSPVADVLREKLSSVNWARVGLGLPLLNDEVEH-KPSMTSAAKSFVHT---YNKSVEP 164
+ +A ++E L +VN +EH K +KSF T Y K +
Sbjct: 122 QTIKDIASAIKELLDTVN-NVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKA 180
Query: 165 ADVYTSGMSVQNTRRVYQSVDI----EEVPPSHHHHHH 198
+V+ S R ++Q+ I + V HHHHHH
Sbjct: 181 INVFVSA-----NRLIHQTNLILQTFKTVALEHHHHHH 213
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8,
structural genomics, PSI-2, protein structure
initiative; NMR {Desulfitobacterium hafniense Y51} PDB:
2l3u_A
Length = 98
Score = 32.2 bits (73), Expect = 0.035
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 170 SGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
+G+ + + V ++ +E P HHHHHH
Sbjct: 70 AGIEMVSIPDVTYTLKAKEDPLEHHHHHH 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.035
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 82/230 (35%)
Query: 41 LQWLEDSDYNPTCE-LCRKDLAAENC--IRLT---CYHVY-HWSCLNH--YARQLPSTTA 91
L+WLE+ P + L +C I + Y V L T
Sbjct: 216 LEWLENPSNTPDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 92 PAGYKCPQCKTGLFPPNNLVSPVA-----------DVLREKLSSVNWARVGL-------- 132
G LV+ VA +R+ ++ + + +G+
Sbjct: 273 --------HSQG------LVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPN 316
Query: 133 -GLP--LLNDEVEH---KPS-MTS-------AAKSFVHTYNKSVEPAD--VYTSGMSVQN 176
LP +L D +E+ PS M S + +V+ N + PA V +S+ N
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVE---ISLVN 372
Query: 177 TRRVYQSVDIEEV---PPS-----HHHHHHPVAPVSRDHDENKYKRRSIV 218
+ V PP + AP D + R +
Sbjct: 373 GAKNL-------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.0 bits (70), Expect = 0.048
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 51 PTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
P C +C + + + L C HV+ + C+ + G +C C+ P + L
Sbjct: 16 PECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL--------GKRCALCRQ-EIPEDFL 64
Query: 111 VSP 113
S
Sbjct: 65 DSG 67
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 31.8 bits (72), Expect = 0.050
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 42 QWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
Q +E C +C + + + C + +SC+ + + + CP C+
Sbjct: 14 QSVESIAEVFRCFIC-MEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQ-------CPHCR 65
Query: 102 TGLFPPNNLVSPVADVLREKLSSV 125
L + A+ + ++L ++
Sbjct: 66 APLQLRELVNCRWAEEVTQQLDTL 89
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 30.8 bits (70), Expect = 0.053
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 47 SDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
+ C +C +D + + L C H + + C+ + RQ P+ CP CK
Sbjct: 2 ATVAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQNPT--------CPLCKV 48
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A
{Yersinia pestis} SCOP: e.46.1.1
Length = 310
Score = 32.5 bits (73), Expect = 0.090
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 136 LLNDEVEHKPSMTSAAKSFVHTYNKSVEPADVYTSGMSVQNTRRVYQSVDIEEVPPSHHH 195
LND V K + S S +N ++E + + +Q V Q + +++ HHH
Sbjct: 257 PLNDLVSQKTTQLSDITS---RFNSAIEALNRF-----IQKYDSVMQRL-LDDTSGKHHH 307
Query: 196 HHH 198
HHH
Sbjct: 308 HHH 310
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 31.1 bits (70), Expect = 0.10
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 42 QWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
+L + C C++ + I C H CL+ R + CP C+
Sbjct: 44 LFLSKVEETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA-------QVFSCPACR 94
Query: 102 TGLFPPNNL 110
L +
Sbjct: 95 YDLGRSYAM 103
>3gio_A Putative uncharacterized protein; antiparallel beta sheet,
four-helix bundle, loop, DNA binding protein; 2.40A
{Helicobacter pylori}
Length = 186
Score = 31.7 bits (71), Expect = 0.11
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 192 SHHHHHHPVAPVSR-DHDENKYKRRSIVEWISRW 224
SHHHHHH V R H N +R S ++ + W
Sbjct: 4 SHHHHHHSSGLVPRGSHMPNTSQRNSFLQDVPYW 37
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 30.4 bits (69), Expect = 0.12
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 45 EDSDYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103
C +C + + L C+H +H C++ + ++ + CP C+
Sbjct: 35 GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGT--------CPVCRCM 86
Query: 104 LFPP 107
PP
Sbjct: 87 FPPP 90
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis
virus} SCOP: d.254.1.1
Length = 69
Score = 29.8 bits (66), Expect = 0.13
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIVEWISRWWM 226
+HHHHHH P HD N+ +R ++ + R++M
Sbjct: 2 AHHHHHH--EPGDLRHDLNQQERATLSSNVQRFFM 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 29.3 bits (66), Expect = 0.19
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 44 LEDSDYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
+++ + + C +C +D + + C H +H CL + CP C
Sbjct: 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV--------CPLCNM 60
Query: 103 GLFPPNNLVSP 113
+ L P
Sbjct: 61 PVLQLAQLSGP 71
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 28.8 bits (65), Expect = 0.22
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 47 SDYNPTCELCRKDLAA--ENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
S + C +C +D+ L C H+ H +C ++ GY+CP C
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--------GYRCPLCS 50
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 31.5 bits (70), Expect = 0.22
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 10/102 (9%)
Query: 2 GLCKCPKRKVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPT-CELCRKDL 60
+C C + +C C +L D D + C +C
Sbjct: 51 DICICCGSLQVHTQHPLFEGGICAPCKDKFLDA-------LFLYDDDGYQSYCSICCSGE 103
Query: 61 AAENCIRLTCYHVYHWSCLNHY--ARQLPSTTAPAGYKCPQC 100
C C Y + C++ A + + C C
Sbjct: 104 TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 29.4 bits (66), Expect = 0.26
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 191 PSHHHHHHPVAPVSRDHDENKYKRRSIVEWISR 223
SHHHHHH V R + + W+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMSGLGEAGMSAWLRA 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 28.6 bits (64), Expect = 0.29
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 52 TCELCRKDL-----AAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104
+C +C + C HV+ CL + CP C+ +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--------TCPTCRKKI 54
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 29.1 bits (65), Expect = 0.40
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIVEW 220
SHHHHHH V R + I W
Sbjct: 4 SHHHHHHSSGLVPRGSHMAAPQDLDIAVW 32
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 28.5 bits (64), Expect = 0.41
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 45 EDSDYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103
E C +C++D A +R L C H++H SC+ + Q S CP C+
Sbjct: 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS--------CPVCRKS 61
Query: 104 LFPPNNLVSP 113
L N +P
Sbjct: 62 LTGQNTATNP 71
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 29.3 bits (65), Expect = 0.46
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 3 LCK-CPKRKVTNQFCYEHRVNVCEYCMVTNHPKCI--------VQSYLQWLEDSDYNPTC 53
+C C K N+ + C C + HP C+ L+W TC
Sbjct: 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRW--QCIECKTC 64
Query: 54 ELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCK 101
CR + + +C +H C + P T P G + C C+
Sbjct: 65 SSCRDQGKNADNMLFCDSCDRGFHMECCDP-----PLTRMPKGMWICQICR 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 28.8 bits (64), Expect = 0.54
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 23 VCEYCMVTNHPKCIVQSYLQWLEDSDY---NPTCELCRKDLAAEN-CIRLTCYHVYHWSC 78
C C H C+ + C+ C++ + TC YH C
Sbjct: 24 FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFC 83
Query: 79 LNHYARQLPSTTAPAGYKCPQCKTGLFPPNN 109
L + +P+ G+KC C+ + P++
Sbjct: 84 LQPVMKSVPTN----GWKCKNCRICISGPSS 110
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 29.9 bits (67), Expect = 0.57
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIV 218
SHHHHHH V R + +
Sbjct: 4 SHHHHHHSSGLVPRG---SHMTPDFLA 27
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural
genomics, PSI, protein structure initiative; 1.90A
{Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Length = 80
Score = 28.3 bits (62), Expect = 0.60
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 174 VQNTRRVYQSVDIEEVPPSHHHHHH 198
+Q+ Y V E HHHHHH
Sbjct: 56 IQHLDEAYNKVKRGESKLEHHHHHH 80
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 27.9 bits (62), Expect = 0.66
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 13/65 (20%)
Query: 45 EDSDYNPTCELCRKDL-----AAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQ 99
+C +C + C HV+ CL + CP
Sbjct: 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--------TCPT 56
Query: 100 CKTGL 104
C+ +
Sbjct: 57 CRKKI 61
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB
fold, cold shock structural genomics; NMR
{Pectobacterium atrosepticum}
Length = 74
Score = 27.7 bits (62), Expect = 0.72
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 154 FVHTYNKSVEPADVYTSGMSV----QNTRRVYQSVDIEEVPPSHHHHHH 198
+ H V D+ +V + + ++ VP HHHHHH
Sbjct: 28 YFHV--IKVANPDLIKKDAAVTFEPTTNNKGLSAYAVKVVPLEHHHHHH 74
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 29.8 bits (68), Expect = 0.75
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 192 SHHHHHHPVAPVSRDH--DENKYKRRSIV 218
SHHHHHH V R E +R ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMLEMSQNKRVVI 32
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor,
hydrolase-hydrolase complex; 2.80A {Streptococcus
pyogenes}
Length = 268
Score = 29.4 bits (65), Expect = 0.76
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 193 HHHHHHPVAPVSRDHDENKYKRRSIVEWIS 222
HHHHHH + RD E K+K +W++
Sbjct: 2 HHHHHHTFGNMERDLFEKKFKEIK-DKWVT 30
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation,
cleavage of beta-1, 4-D-galactose linkages; HET: EPE;
2.30A {Zobellia galactanivorans} SCOP: b.29.1.2
Length = 346
Score = 29.4 bits (65), Expect = 0.83
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 179 RVYQSVDIEEVPPSHHHHHH 198
R+Y+ V+ E HHHHHH
Sbjct: 331 RIYKPVEKLE----HHHHHH 346
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 28.1 bits (62), Expect = 0.96
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 24 CEYCMVTNHPKCI------VQSYLQWLEDSDYNPTCELCRKDLAAEN---CIRLTCYHVY 74
C C + HP C+ ++ + +C LC + C C Y
Sbjct: 26 CADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD--CDRGY 83
Query: 75 HWSCLNHYARQLPSTTAPAG-YKCPQC 100
H CLN P P G + C C
Sbjct: 84 HMYCLNP-----PVAEPPEGSWSCHLC 105
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 29.6 bits (65), Expect = 1.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIVEWI 221
SHHHHHH V R K K ++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMRKVKIGELINSL 33
>1s3r_A Intermedilysin; toxin; 2.60A {Streptococcus intermedius}
Length = 535
Score = 29.5 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 192 SHHHHHHPVAPVSRDHDENK--YKRRSIVEWISR 223
SHHHHHH +A ++ + Y W S
Sbjct: 4 SHHHHHHGMASMTGGQQMGRDLYDDDDKDRWGSE 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 46 DSDYNPTCELCRKDLA-----AENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQC 100
+C +C + + C HV+ CL + CP C
Sbjct: 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTC 62
Query: 101 KTGL 104
+ +
Sbjct: 63 RKKI 66
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 192 SHHHHHHPVAPVSRD 206
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRG 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
C H + +C+ +T CP C+ +P NL
Sbjct: 35 ADCNHSFCRACITLNYESNRNTDGK--GNCPVCRV-PYPFGNL 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 28.6 bits (63), Expect = 1.3
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 8/83 (9%)
Query: 20 RVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCL 79
+C+ C +D Y C +C C C + C+
Sbjct: 55 VGGMCQNCKNCFLECAYQY------DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECV 108
Query: 80 NHYARQLPSTTAPAG--YKCPQC 100
+ + A + C C
Sbjct: 109 DLLVGPGAAQAAIKEDPWNCYMC 131
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia
coli} PDB: 2wz7_A
Length = 83
Score = 27.3 bits (60), Expect = 1.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 174 VQNTRRVYQSVD-----IEEVPPSHHHHHH 198
V+ +++ +D HHHHHH
Sbjct: 54 VERQKQILLQIDSLSSGGAAAQLEHHHHHH 83
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein
biogenesis, GET pathway hydrolase-transport protein
complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Length = 46
Score = 26.2 bits (57), Expect = 1.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 193 HHHHHHPVAPVSRDHDENKYKR 214
HHHHHHP+ + ++ + R
Sbjct: 3 HHHHHHPMGSELTEAEKRRLLR 24
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 27.9 bits (61), Expect = 1.4
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 44 LEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
L + + C H +H CL + +CP CKT
Sbjct: 35 LAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM---YCNGNKDGSLQCPSCKT 90
>3u07_A Uncharacterized protein VPA0106; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium; 2.08A {Vibrio parahaemolyticus}
Length = 443
Score = 28.8 bits (63), Expect = 1.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 185 DIEEVPPSHHHHHH 198
+I+ V HHHHHH
Sbjct: 430 EIKVVKLEHHHHHH 443
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 28.6 bits (64), Expect = 1.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIV 218
SHHHHHH V R +++ ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMAAIRKKLVI 30
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 28.6 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 192 SHHHHHHPVAPVSRDHD--ENKYKRRSIV 218
SHHHHHH V R K +V
Sbjct: 4 SHHHHHHSSGLVPRGSHMVTGKAFPYVVV 32
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 11/99 (11%)
Query: 101 KTGLFPPNNLVSPVA--DVLREKLSSVNWARVGLGLPLLNDEVEHKPSMTSAAKSFVHTY 158
G P + + R + L S S + + +
Sbjct: 311 LKGSIAARLDSDPSKYNAYGQSAMRDWRSNR---IVGSLVHGAVAPESFMSQFGTVMEIF 367
Query: 159 NKSVEPADVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHH 197
++ P + + V + + HHHHH
Sbjct: 368 LQTRNPQAA------ANAAQAIADQVGLGRLGQHHHHHH 400
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II,
cellulosome, structural protein; 1.20A {Acetivibrio
cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Length = 181
Score = 28.2 bits (62), Expect = 1.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 165 ADVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
D SG SV + ++D+ + HHHHHH
Sbjct: 150 GDRIQSGYSVIQPAVI--NLDMIKASLEHHHHHH 181
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 26.7 bits (59), Expect = 1.6
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106
CE C L + + C H + SC+ + KC C+ +
Sbjct: 17 KCEKCHLVL--CSPKQTECGHRFCESCMAALLSS-------SSPKCTACQESIVK 62
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
C+H CL + + CP C+ L +
Sbjct: 94 TECFHNVCKDCLQRSFKA-------QVFSCPACRHDLGQNYIM 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 26.6 bits (59), Expect = 1.6
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 19/71 (26%)
Query: 45 EDSDYNPTCELCRKDLAAENCIR-LTCYHVYHWSC-----LNHYARQLPSTTAPAGYKCP 98
+ D C +C L +R L C H++H C + + KCP
Sbjct: 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------------KKCP 55
Query: 99 QCKTGLFPPNN 109
C+ +
Sbjct: 56 ICRVDIEAQLP 66
>3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A
{Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
Length = 335
Score = 28.6 bits (62), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 173 SVQNTRRVYQSVDIEEVPPSHHHHHH 198
+ R Y ++D+E + HHHHH
Sbjct: 309 FENDLRPQYLTIDLEPISQLEHHHHH 334
>2xdh_A Cohesin; archaeal protein, cell adhesion; 1.96A {Archaeoglobus
fulgidus}
Length = 163
Score = 28.0 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 160 KSVEPADVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
+ +E D+ + + V ++ V EE +HHHHHH
Sbjct: 128 QGIEIYDIDGNSVKVATINGTFRIVSQEE---AHHHHHH 163
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA
domain, regula subunit of DDK, CDC7, phosphorylation,
nuclear; 2.70A {Saccharomyces cerevisiae}
Length = 151
Score = 27.8 bits (61), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIV 218
SHHHHHH V R + KR S +
Sbjct: 4 SHHHHHHSSGLVPRG---SHMKRDSRI 27
>2o8m_A Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB:
3lon_A* 2a4g_A* 2a4q_A* 2fm2_A* 2obo_A* 2obq_A 2a4r_A*
2oc1_A* 2oc7_A* 2oc8_A* 3eyd_A* 3kf2_A 3kn2_A* 3knx_A*
2oc0_A* 3lox_A* 2oin_A 1rtl_A* 1rgq_A* 2f9v_A* ...
Length = 200
Score = 28.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 165 ADVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
A V T G++ ++++ SHHHHHH
Sbjct: 167 AAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH 200
>2giy_A Glycoprotein E; viral FC receptor, IG V domain, viral protein;
1.78A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 191
Score = 27.8 bits (61), Expect = 2.0
Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 22/155 (14%)
Query: 48 DYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPA----GYKCPQCKTG 103
D +C R E+C+ YH CL+ A + + C
Sbjct: 55 DVPTSCAEMR---IYESCL----YHPQLPECLSP-ADAPCAASTWTSRLAVRSYAGCSRT 106
Query: 104 LFPPNNLVSPVADVLREKLSSVNWARVGLGLPLLNDEVEHKPSMTSAAKSFVHTYNKSVE 163
PP A+ E + + W + L + S V N +
Sbjct: 107 NPPPRCS----AEAHMEPVPGLAWQAASVNLEFRD-----ASPQHSGLYLCVVYVNDHIH 157
Query: 164 PADVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
+ + + R ++ HHHHHH
Sbjct: 158 AWG-HITISTAAQYRNAVVEQPLDIEGRGHHHHHH 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 27.4 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRS 216
SHHHHHH V R ++R
Sbjct: 4 SHHHHHHSSGLVPRGSHMGPFRRSD 28
>2ozn_A O-GLCNACASE NAGJ; EF hand, toxin; 1.60A {Clostridium perfringens}
SCOP: b.2.2.2 PDB: 2o4e_A 2jh2_A
Length = 165
Score = 27.9 bits (61), Expect = 2.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 192 SHHHHHHPVAPVSRDHD 208
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRGSH 20
>2nwa_A Hypothetical protein YTMB; mostly beta protein, structural
genomics, PSI-2, protein structure initiative; 2.70A
{Bacillus subtilis} SCOP: b.122.1.13
Length = 88
Score = 26.9 bits (59), Expect = 2.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 175 QNTRRVYQSVDIEEVPPSHHHHHH 198
T Y+ + V HHHHHH
Sbjct: 65 GRTIITYKLTSLHSVNLEHHHHHH 88
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide
binding protein; 1.40A {Saccharomyces cerevisiae} PDB:
3plv_A 1m94_A 1p0r_A
Length = 93
Score = 26.9 bits (59), Expect = 2.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>2f4i_A Hypothetical protein TM0957; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MLY MSE; 2.25A {Thermotoga maritima} SCOP:
b.40.11.1
Length = 197
Score = 27.8 bits (60), Expect = 2.2
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 193 HHHHHHPVAPVSRD 206
HHHHHH D
Sbjct: 7 HHHHHHEEMEXGFD 20
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 27.9 bits (63), Expect = 2.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIV 218
+HHHHHH ++ R+ V
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMSRKYFV 28
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, unknown function; 1.20A {Bacillus subtilis}
SCOP: b.174.1.1
Length = 80
Score = 26.7 bits (58), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 181 YQSVDIEEVPPSHHHHHH 198
Y+ + EE+P HHHHH
Sbjct: 62 YEITNTEELPELEHHHHH 79
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix,
restriction- modification, transcription regulator;
2.80A {Enterobacter SP} PDB: 3fya_A
Length = 99
Score = 27.0 bits (60), Expect = 2.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSI 217
SHHHHHH V R + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMESFLLSKV 29
>3loq_A Universal stress protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Length = 294
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 193 HHHHHHPVAPVSRDHDENKYKRRSIV 218
HHHHHH V + ++ +++
Sbjct: 2 HHHHHHSS-GVDLGTENLYFQSNAML 26
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 26.8 bits (59), Expect = 2.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 189 VPPSHHHHHHP---VAPVSRDHDENKYKRRSIVEWISR 223
+ SHHHHHH V S + +S+ EW+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMISGLRTLEQSVGEWLES 38
>3faj_A ORF131, putative uncharacterized protein; archaeal virus,
extremophiles, bicaudavirus, structural PROT binding
protein; 1.70A {Acidianus two-tailed virus}
Length = 151
Score = 27.5 bits (60), Expect = 2.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRR 215
SHHHHHH V R KY+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMAKYEPK 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
L C H + +CL ++ CP C+ + P N+
Sbjct: 35 LDCGHSFCQACLTANHKKSMLDKGE--SSCPVCRI-SYQPENI 74
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 28.0 bits (62), Expect = 2.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 186 IEEVPPSHHHHHH 198
+ VP SHHHHHH
Sbjct: 439 VNPVPRSHHHHHH 451
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 65 CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
C C H +C+ + S P + C C+
Sbjct: 27 CEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum
cofactor, structural genomics, center for structural
genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm
1728}
Length = 136
Score = 27.3 bits (60), Expect = 2.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 166 DVYTS-GMSVQNTRRVYQSVDIEEVP-PSHHHHHH 198
DVY M V + ++ + P+H H HH
Sbjct: 101 DVYIVPEMPVADALKLILEGKVSPATAPTHDHGHH 135
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 26.4 bits (58), Expect = 2.8
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 45 EDSDYNPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCKT 102
E + C C K I C YHW C+ + + + CP+C
Sbjct: 13 EWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAAPPEEMQWFCPKCAN 67
Query: 103 GL 104
+
Sbjct: 68 KI 69
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 26.8 bits (59), Expect = 2.8
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLV 111
+C++C L + + +C H++ C+ + + S CP C+ F P +L
Sbjct: 25 SCQICEHIL--ADPVETSCKHLFCRICILRCLKVMGSY-------CPSCRYPCF-PTDLE 74
Query: 112 SPVADVLR 119
SPV L
Sbjct: 75 SPVKSFLN 82
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 27.2 bits (60), Expect = 2.8
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 70 CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLVS-PVADVLREKL 122
C H + C+ R +CP C+ L +L P D L K+
Sbjct: 73 CLHRFCADCIITALRS-------GNKECPTCRKKLVSKRSLRPDPNFDALISKI 119
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM
beta/alpha-barrel, PLC-like phosphodiesterase, inactive
H12A phospholipase D; HET: PGE; 1.60A {Loxosceles
intermedia} PDB: 3rlh_A*
Length = 302
Score = 27.8 bits (61), Expect = 2.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIVEWI 221
SHHHHHH V R + RR I WI
Sbjct: 4 SHHHHHHSSGLVPRGSHMLEGNRRPI--WI 31
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 26.3 bits (58), Expect = 2.9
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 45 EDSDYNPTCELCRKDLAAEN---CIRLTCYHVYHWSCLNHYARQLPSTTAPAGYK--CPQ 99
E ++ +C +C C C YH CLN P P CP
Sbjct: 21 EKKCHSCSCRVCGGKHEPNMQLLC--DECNVAYHIYCLNP-----PLDKVPEEEYWYCPS 73
Query: 100 CKT 102
CKT
Sbjct: 74 CKT 76
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 26.2 bits (57), Expect = 3.0
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 45 EDSDYNPTCELCRK--DLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
+ + C LC + ++ N TC + C + CP C+
Sbjct: 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG-------LCPACRK 58
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 27.7 bits (61), Expect = 3.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 191 PSHHHHHHPVAPVSRD 206
SHHHHHH V R
Sbjct: 3 SSHHHHHHSSGLVPRG 18
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.7 bits (62), Expect = 3.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 192 SHHHHHHPVAPVSRDH 207
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRGS 19
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 27.7 bits (61), Expect = 3.2
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 193 HHHHHHPVAPVSRDHDENKYKRRSI 217
HHHHHH + H N +
Sbjct: 7 HHHHHHSSGHIEGRHMANPLAGKPF 31
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel,
glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 28.0 bits (61), Expect = 3.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 192 SHHHHHHPVAPVSRDHDENKYK 213
SHHHHHH V R +
Sbjct: 4 SHHHHHHSSGLVPRGSHMVASE 25
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 32/66 (48%)
Query: 154 FVHTYNKSVEPADVYTSGMSVQNTRRV------YQ----SVDIEEV-----------PPS 192
+ +T N + ++ R + +Q V + + P +
Sbjct: 482 YAYTLN---------NTALAT--PRILAMLLENHQLQDGRVRVPQALIPYMGKEVLEPGA 530
Query: 193 HHHHHH 198
HHHHHH
Sbjct: 531 HHHHHH 536
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 25.8 bits (57), Expect = 3.4
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 42 QWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
++ C +C + + L C H + C++ ++ + CP C+
Sbjct: 7 GRVKQLTDEEECCIC---MDGRADLILPCAHSFCQKCIDKWSDR--HRN------CPICR 55
Query: 102 TGLFPPNNLVSPVA 115
+ N P +
Sbjct: 56 LQMTGANESSGPSS 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 49 YNPTCELCRKDLAAENCIRL--TCYHVYHWSCL 79
C C+ + E+C+ + C H +H C+
Sbjct: 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCM 57
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 27.3 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 192 SHHHHHHPVAPVSRDHDENK 211
SHHHHHH V R +K
Sbjct: 4 SHHHHHHSSGLVPRGSHMSK 23
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519
protein structure initiative, NEW YORK SGX research
center structural genomics; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 27.1 bits (60), Expect = 3.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 185 DIEEVPPSHHHHHH 198
+ SHHHHHH
Sbjct: 176 PVVSEGGSHHHHHH 189
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT----GLFPPNNLVSPVADVLREKLS 123
C H++ C+ Q +CP CK + S + + L + +
Sbjct: 37 TKCDHIFCKFCMLKLLNQKKGP-----SQCPLCKNDITKRSLQESTRFSQLVEELLKIIC 91
Query: 124 S 124
+
Sbjct: 92 A 92
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 25.8 bits (57), Expect = 4.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
+ C H + C+ T+ +KCP CKT N +
Sbjct: 36 IDCGHNFCLKCITQIGE-----TSCGFFKCPLCKT-SVRKNAI 72
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 25.5 bits (56), Expect = 4.0
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 43 WLEDSDYNPTCELCRKD---LAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCP 98
++D+ CE+C++ + + C R YH CL+ AP G + CP
Sbjct: 4 GSYETDHQDYCEVCQQGGEIILCDTCPR-----AYHMVCLD-----PDMEKAPEGKWSCP 53
Query: 99 QCK 101
C+
Sbjct: 54 HCE 56
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29,
ataxia-telangiectasia group D-associated protein, ATDC,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.43.1.1
Length = 72
Score = 25.8 bits (57), Expect = 4.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 5 KCPK-RKVTNQFCYEHRVNVCEYCMVTNH 32
KCP K FC + +C CM H
Sbjct: 20 KCPVHGKTMELFCQTDQTCICYLCMFQEH 48
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 27.3 bits (61), Expect = 4.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family;
2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A
Length = 124
Score = 26.6 bits (58), Expect = 4.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 192 SHHHHHHPVAPVSRDHDENK 211
SHHHHHH V R N+
Sbjct: 4 SHHHHHHSSGLVPRGSHMNR 23
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich,
unknown function; 1.85A {Streptococcus mutans} SCOP:
d.64.2.1 PDB: 2g0j_A
Length = 145
Score = 26.6 bits (58), Expect = 4.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 185 DIEEVPPSHHHHHH 198
++ V HHHHHH
Sbjct: 276 HLKAVDEGHHHHHH 289
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus
binding, gene-3-protein, receptor binding, N-pilus;
1.61A {Enterobacteria phage ike}
Length = 115
Score = 26.4 bits (57), Expect = 4.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 179 RVYQSVDIEEVPPSHHHHHH 198
R DI+ P HHHHHH
Sbjct: 96 RAQVEGDIQRSVPDHHHHHH 115
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 27.2 bits (61), Expect = 4.6
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 154 FVHTYNKSVEPADVYTSGM---------------SVQNTRRVYQSVDIEEVPPSHHHHHH 198
+ K A++ GM V+N ++ ++ + E+ HHHHH
Sbjct: 263 LAYGLAKDAPAAELLKWGMAAGMANAQERMTGHVDVENVKKHLMNIQVVEIAKEGHHHHH 322
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 27.5 bits (62), Expect = 4.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 192 SHHHHHHPVAPVSRD-------HDENKYKRR 215
SHHHHHH +A ++ +D++ R
Sbjct: 4 SHHHHHHGMASMTGGQQMGRTLYDDDDKDRW 34
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin, pilus
filament, forming protein, adhesin, fimbriae, cell
adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2 PDB:
3hrv_A
Length = 192
Score = 27.1 bits (59), Expect = 4.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A
{Thermoproteus}
Length = 216
Score = 27.0 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 192 SHHHHHHPVA--PVSRDHDENKY 212
SHHHHHH P Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMKVWDY 26
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 27.3 bits (61), Expect = 4.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 193 HHHHHHPVAPVSRDHD------ENKYKRR 215
HHHHHH V + ++ EN +K
Sbjct: 5 HHHHHHDVDIPTTENLYFQGAMENSFKAA 33
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 26.0 bits (57), Expect = 4.7
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 52 TCELCRKDLAAEN---CIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCKTG 103
C++C + + C C YH CL P P G ++CP+C
Sbjct: 18 ICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLP-----PLPEIPRGIWRCPKCILA 66
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
protein structure initiative; 2.05A {Thermotoga
maritima}
Length = 278
Score = 27.1 bits (59), Expect = 4.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 184 VDIEEVPPSHHHHHH 198
+ I EV HHHHHH
Sbjct: 264 LRILEVVEGHHHHHH 278
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain,
isgylation, antiviral protein-viral P complex; 2.01A
{Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Length = 109
Score = 26.2 bits (57), Expect = 5.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 183 SVDIEEVPPSHHHHHH 198
S IE P HHHHHH
Sbjct: 94 SAGIEGFEPYHHHHHH 109
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 5.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 68 LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNL 110
L C H +C+ ++ T+ CP C + +L
Sbjct: 28 LDCGHSLCRACITVSNKE-AVTSMGGKSSCPVCGI-SYSFEHL 68
>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein
ST initiative, northeast structural genomics consortium,
NESG; 1.80A {Vibrio parahaemolyticus} SCOP: e.65.1.1
Length = 491
Score = 27.2 bits (59), Expect = 5.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 185 DIEEVPPSHHHHHH 198
DIE V HHHHHH
Sbjct: 478 DIELVKLEHHHHHH 491
>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis,
DOM-fold, amidohy transferase; 1.60A {Streptomyces
cattleya}
Length = 419
Score = 27.2 bits (59), Expect = 5.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 192 SHHHHHHPVAPVSRD 206
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRG 18
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon,
beta-sheet, structural switching; NMR {Enterobacteria
phage P22} SCOP: a.43.1.1
Length = 64
Score = 25.1 bits (54), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 178 RRVYQSVDIEEVPPSHHHHHH 198
+RV +S E +HHHHHH
Sbjct: 39 QRVMESFKKEGRIGAHHHHHH 59
>3ded_A Probable hemolysin; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG, membrane; HET: MSE; 2.14A {Chromobacterium
violaceum} SCOP: d.145.1.4
Length = 113
Score = 26.0 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 192 SHHHHHHPVAP-----VSRDHDENKYKRRS 216
SHHHHHH D +E++ +R
Sbjct: 4 SHHHHHHSSGRENLYFQGHDGEEDEIVQRE 33
>1y08_A Hypothetical protein SPY0861; cysteine proteinase, papain-like fold
with major insertions, hydrolase; 1.93A {Streptococcus
pyogenes} SCOP: d.3.1.12 PDB: 2avw_A 2au1_A
Length = 323
Score = 26.9 bits (58), Expect = 5.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKRRSIVEWISRW 224
SHHHHHH V R +Y + S W
Sbjct: 4 SHHHHHHSSGLVPRGSHMIRYSEVTPYHVTSVW 36
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 26.7 bits (59), Expect = 5.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure,
transferase-antibiotic CO; HET: APC CLY; 2.00A
{Enterococcus faecium} PDB: 3jyy_A*
Length = 287
Score = 26.8 bits (58), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 27.0 bits (60), Expect = 5.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
+HHHHHH ++
Sbjct: 2 AHHHHHHMGTLEAQ 15
>2iec_A Uncharacterized protein conserved in archaea; tetramer with
intra-molecular and inter-molecular disufide bonds,
structural genomics, PSI-2; 2.33A {Methanopyrus
kandleri} SCOP: d.316.1.1
Length = 131
Score = 26.0 bits (57), Expect = 5.9
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 184 VDIEEVPP-SHHHHHH 198
+I V HHHHHH
Sbjct: 116 EEIRRVEQEGHHHHHH 131
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Length = 109
Score = 26.0 bits (57), Expect = 6.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 166 DVYTSGMSVQNTR--RVYQSVDIEEVPPSHHHHHH 198
Y VQ + + + + EV HHHHHH
Sbjct: 75 GEYNDRFQVQVNKNSSIEKLSEPIEVGLEHHHHHH 109
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Length = 182
Score = 26.7 bits (58), Expect = 6.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 192 SHHHHHHPVAPVSRDHDE 209
SHHHHHH PV DE
Sbjct: 3 SHHHHHHSQDPVQDIEDE 20
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 25.9 bits (56), Expect = 6.2
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 193 HHHHHHPVAPVSRDHDENKYKRRSIV 218
HHHHHH +A +SR + + +YK +V
Sbjct: 2 HHHHHHAMA-MSRSNRQKEYKCGDLV 26
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 26.8 bits (58), Expect = 6.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 192 SHHHHHHPVAPVSRD 206
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRG 18
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 26.9 bits (59), Expect = 6.5
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 188 EVPPSHHHHHH 198
HHHHHH
Sbjct: 413 RSGTKHHHHHH 423
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 192 SHHHHHHPVAPVSRD 206
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRG 18
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity;
beta-lactam, D- transpeptidase, D-carboxypeptidase,
biosynthetic protein; 1.80A {Staphylococcus aureus}
SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A
1mws_A* 1mwt_A*
Length = 646
Score = 26.9 bits (60), Expect = 6.6
Identities = 3/29 (10%), Positives = 6/29 (20%), Gaps = 8/29 (27%)
Query: 40 YLQWLEDSDYNPTCELCRKDLAAENCIRL 68
L W + + I +
Sbjct: 102 KLDWDHSVII--------PGMQKDQSIHI 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 25.0 bits (55), Expect = 6.7
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 45 EDSDYNPTCELCRKDLAAENCIR-LTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103
C +C D + +R L C H +H C++ + + + CP C+
Sbjct: 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT--------CPICRAD 69
Query: 104 LFP 106
P
Sbjct: 70 SGP 72
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 24.6 bits (54), Expect = 6.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 45 EDSDYNPTCELCRKD---LAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQC 100
S + C +CRK L + C R VYH CL+ P T P G + CP+C
Sbjct: 4 GSSGHEDFCSVCRKSGQLLMCDTCSR-----VYHLDCLD-----PPLKTIPKGMWICPRC 53
Query: 101 K 101
+
Sbjct: 54 Q 54
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 24.6 bits (54), Expect = 7.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 70 CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
C+ H SC + + P + C +C+
Sbjct: 24 CHTWIHLSCAK-----IRKSNVPEVFVCQKCR 50
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase;
signal recognition particle, SRP, SRP54, FFH, signal
sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Length = 42
Score = 24.2 bits (52), Expect = 7.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 191 PSHHHHHH 198
P HHHHHH
Sbjct: 35 PHHHHHHH 42
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 26.8 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 192 SHHHHHHPVAPVSR----DHDENKYKRRSI 217
SHHHHHH V R D R +I
Sbjct: 4 SHHHHHHSSGLVPRGSHMAADNRVQMRTTI 33
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET:
CMP; 1.90A {Anabaena SP}
Length = 398
Score = 26.8 bits (58), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 171 GMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
G+++QN + E+ SHHHHHH
Sbjct: 371 GVALQNAQLFATVKQQEQGSRSHHHHHH 398
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex,
gene regulation; HET: MLC; 3.10A {Bacillus subtilis}
SCOP: d.38.1.5
Length = 157
Score = 26.3 bits (58), Expect = 7.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 192 SHHHHHHP 199
SHHHHHH
Sbjct: 4 SHHHHHHG 11
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 26.8 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 26.2 bits (57), Expect = 7.4
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 179 RVYQSVDIEE--VPPSHHHHHHPVAP 202
R++ E SHHHHHH P
Sbjct: 119 RIFCLKRTAENLYFQSHHHHHHWSHP 144
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
4ado_A
Length = 222
Score = 26.5 bits (58), Expect = 7.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 192 SHHHHHHPVAPVSRDHDENKYKR 214
+HHHHHH + + H N +
Sbjct: 2 AHHHHHHGMKTMIYPHQYNYIRS 24
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 26.7 bits (58), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 191 PSHHHHHHPVAPVSRDHDENKYKRRSIVEWISR 223
SHHHHHH +A + + + K +E SR
Sbjct: 2 GSHHHHHHGMARLENLYFQGKQPVPKQIERYSR 34
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 24.7 bits (54), Expect = 7.8
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 44 LEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTG 103
L + C +C K + C H + SC+ + +CP+C
Sbjct: 9 LSELTPYILCSIC-KGYLIDATTITECLHTFCKSCIVRHFYYSN--------RCPKCNIV 59
Query: 104 LFPPNNLVSP 113
+ L P
Sbjct: 60 VHQTQPLSGP 69
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 26.4 bits (58), Expect = 8.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake,
regulation, amino-acid transport, ATP-BIN hydrolase,
inner membrane, membrane; 2.10A {Escherichia coli} SCOP:
d.58.18.13
Length = 106
Score = 25.5 bits (56), Expect = 8.2
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 182 QSVDIEE---VPPSHHHHH 197
V +E V HHHHH
Sbjct: 88 HHVKVEVLGYVLEHHHHHH 106
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 26.4 bits (59), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 192 SHHHHHHPVAPVS 204
SHHHHHH +A ++
Sbjct: 4 SHHHHHHGMASMT 16
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked
homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Length = 113
Score = 25.5 bits (55), Expect = 8.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 192 SHHHHHHPVAPVSR-DHDENKYKRRSI 217
SHHHHHH V R H +K R I
Sbjct: 4 SHHHHHHSSGLVPRGSHMNSKALPRQI 30
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 26.2 bits (58), Expect = 8.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
+HHHHHH ++
Sbjct: 2 AHHHHHHMGTLEAQ 15
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle,
antimicrobial protein; 1.80A {Enterococcus mundtii}
Length = 118
Score = 25.7 bits (56), Expect = 8.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 26.0 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase,
structural genomi consortium, SGC; 2.08A {Homo sapiens}
Length = 141
Score = 25.9 bits (56), Expect = 9.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPR 17
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function,
PSI-2, protein structure initiative; HET: CDP; 1.85A
{Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2
PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Length = 146
Score = 25.6 bits (56), Expect = 9.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 184 VDIEEVPPSHHHHHH 198
+ ++ HHHHHH
Sbjct: 132 IKGDKDEEGHHHHHH 146
>2nsf_A Hypothetical protein CGL3021; metal binding, isomerase; 1.75A
{Corynebacterium glutamicum} SCOP: a.213.1.4 d.106.1.2
PDB: 2nsg_A
Length = 261
Score = 26.2 bits (57), Expect = 9.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 192 SHHHHHHPVAPVSRDHD 208
SHHHHHH V R
Sbjct: 4 SHHHHHHSSGLVPRGSH 20
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 26.3 bits (57), Expect = 9.9
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 166 DVYTSGMSVQNTRRVYQSVDIEEVPPSHHHHHH 198
D + S + V++ EE P HHHHHH
Sbjct: 385 DFFNSLLRVESRETPGN----EEHPLEHHHHHH 413
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.448
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,668,653
Number of extensions: 215667
Number of successful extensions: 4281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4186
Number of HSP's successfully gapped: 267
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)