RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15061
(226 letters)
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 36.6 bits (84), Expect = 3e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 52 TCELCRKDLAAENCIRLT-CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK---TGLFPP 107
C+LC + E + C ++ CL Y L CP G
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66
Query: 108 NNLVSPVADVLREKL 122
N + VA + ++
Sbjct: 67 NEIECMVAAEIMQRY 81
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.5 bits (79), Expect = 0.002
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLV 111
+C++C L + + +C H++ C+ + G CP C+ F P +L
Sbjct: 25 SCQICEHIL--ADPVETSCKHLFCRICILRCLKV-------MGSYCPSCRYPCF-PTDLE 74
Query: 112 SPV 114
SPV
Sbjct: 75 SPV 77
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 30.0 bits (67), Expect = 0.053
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 31 NHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTT 90
+H K + Y + E C++C ++ ++ C H+ SCL +
Sbjct: 4 DHIKVTQEQYELYCEMGSTFQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQESEGQG- 60
Query: 91 APAGYKCPQCKT 102
CP C+
Sbjct: 61 ------CPFCRC 66
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 30.0 bits (67), Expect = 0.065
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL----FPP 107
C +C + + + + C H++ C+ Q +CP CK +
Sbjct: 23 ECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQ-----KKGPSQCPLCKNDITKRSLQE 75
Query: 108 NNLVSPVADVLREKLSSVN 126
+ S + + L + + +
Sbjct: 76 STRFSQLVEELLKIICAFQ 94
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 29.1 bits (65), Expect = 0.082
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 53 CELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
C +C +D + + L C H + + C+ + RQ P+ CP CK
Sbjct: 8 CPICLEDPS-NYSMALPCLHAFCYVCITRWIRQNPT--------CPLCKV 48
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 28.9 bits (64), Expect = 0.10
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 45 EDSDYNPTCELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAG-YKCPQCKT 102
E D N +CR+ I C +H C+ + Y CP C
Sbjct: 10 EVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
Query: 103 GLFP 106
P
Sbjct: 70 LSGP 73
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 28.3 bits (63), Expect = 0.11
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 52 TCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFPPNNLV 111
C+ C+ + + L C H CL +CP C+ +
Sbjct: 8 RCQQCQAEA--KCPKLLPCLHTLCSGCLEASGM-----------QCPICQAPWPLGADTP 54
Query: 112 S 112
+
Sbjct: 55 A 55
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 28.3 bits (62), Expect = 0.24
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 48 DYNPTCELCRKDLAAENCIRLTCYH---VYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
+ C +CR+ A + C +YH C + C +C
Sbjct: 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 26.8 bits (59), Expect = 0.47
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 44 LEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
L + C +C+ C C YH CLN ++P+ + CP+C
Sbjct: 3 LGSDHHMEFCRVCKDGGELLCCDT--CPSSYHIHCLNPPLPEIPN----GEWLCPRCT 54
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 26.0 bits (56), Expect = 1.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 46 DSDYNPTCELCRKDLAAE---NCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
+ + P C +C ++L E C H SCL+ + +T C C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA------CQICGV 55
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 26.5 bits (57), Expect = 1.3
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 10 KVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLT 69
+V ++ E +V E C++ + Y + P
Sbjct: 11 QVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRL----------TK 60
Query: 70 CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
C H +H CL + +CP CKT
Sbjct: 61 CSHAFHLLCLLAM---YCNGNKDGSLQCPSCKT 90
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 25.2 bits (55), Expect = 1.4
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 13 NQFCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDL 60
+ C H +C+ WL + TC LCR +
Sbjct: 13 AELEDGEEARFLPRCGHGFHAECV----DMWLGS---HSTCPLCRLTV 53
Score = 24.4 bits (53), Expect = 2.9
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 10/53 (18%)
Query: 52 TCELCRKDLAAENCIRLT--CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
C +C +L R C H +H C++ + + CP C+
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST--------CPLCRL 51
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 25.0 bits (54), Expect = 2.2
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 47 SDYNPTCELCRKDLAAENCIRL--TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104
S + C C + AA+ C +H C+ + YKCP C
Sbjct: 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEH---IKQYKCPSCSNKS 59
Query: 105 FP 106
P
Sbjct: 60 GP 61
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.1 bits (54), Expect = 2.6
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 42 QWLEDSDYNPTCELCRKDLAAEN---CIRLTCYHVYHWSCLNHYARQLPS-TTAPAGYKC 97
+ + C +C L ++ C C+ H C+ + + P + C
Sbjct: 8 EDPFQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYC 66
Query: 98 PQCKTGLFP 106
C+ P
Sbjct: 67 EICRLTSGP 75
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 135
Score = 25.9 bits (57), Expect = 3.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 102 TGLFPPNNLVSPVADVLREKLSSV 125
G P + +V D L++K++S+
Sbjct: 102 VGSIPVDQVVVRGIDTLQKKVASI 125
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.7 bits (53), Expect = 3.2
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 52 TCELCRKDLAAENCIRL---TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGL 104
C C+ ++L C H SC++ + CP+C T L
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGN-------CPECGTPL 53
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 24.6 bits (53), Expect = 3.7
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 70 CYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLFP 106
C +H C+ P+ + C +C P
Sbjct: 37 CGVWHHTRCIGINNADAL----PSKFLCFRCIELSGP 69
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 24.7 bits (53), Expect = 4.1
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 8/59 (13%)
Query: 44 LEDSDYNPTCELCRKDLAAENCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKT 102
+ D C H +H+ C++ + + CP
Sbjct: 31 IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV--------CPLDNR 81
Score = 23.9 bits (51), Expect = 8.1
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 1 MGLCKCPKRKVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKD 59
M LC + + E V C H CI +WL+ C L ++
Sbjct: 32 MDLCIECQANQASATSEECTV-AWGVCNHAFHFHCI----SRWLK---TRQVCPLDNRE 82
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.0 bits (52), Expect = 4.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 5 KCPK-RKVTNQFCYEHRVNVCEYCMVTNHPKCIVQS 39
KCP K FC + +C CM H +
Sbjct: 13 KCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVT 48
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.8 bits (51), Expect = 5.1
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 53 CELCRKDLAAENCIRL-TCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCK 101
C++CRK + I C +H CL ++P ++CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD----GEWQCPACQ 48
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 25.1 bits (55), Expect = 5.9
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 115 ADVLREKLSSVNWARVGLGLP 135
+DV+ + + ++W R G+
Sbjct: 79 SDVIWKVVEELDWKRYGIESD 99
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 25.5 bits (55), Expect = 6.4
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 9 RKVTNQFCYEHRVNVCEYCMVTNHPKCIVQSYLQW--LEDSDYNPTCELCRKDLAAENCI 66
+ F + + +++ C+ + +V Y++ L + N T KDL
Sbjct: 79 GIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ 138
Query: 67 RLTCYHVYHWSCLNH 81
H
Sbjct: 139 VAKGMKFLASKKFVH 153
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga
maritima [TaxId: 2336]}
Length = 98
Score = 24.4 bits (53), Expect = 6.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 192 SHHHHHHPVAPVSRDHDENKYK 213
SHHHHHH V R KY+
Sbjct: 3 SHHHHHHSSGLVPRGSHMAKYQ 24
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 24.1 bits (51), Expect = 8.2
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 15 FCYEHRVNVCEYCMVTNHPKCIVQSYLQWLEDSDYNPTCELCRKDLAAENCIRLTC 70
FC E ++ C + C+V+ L E ++ + + +C
Sbjct: 33 FCSEKHLSPIGACRM-----CLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASC 83
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 23.5 bits (50), Expect = 9.2
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 50 NPTCELCRKDLAAE----NCIRLTCYHVYHWSCLNHYARQLPSTTAPAGYKCPQCKTGLF 105
P LCR+ C C +H SC+ Y CP C+
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENAVD---IDIYHCPDCEAVFG 65
Query: 106 P 106
P
Sbjct: 66 P 66
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 170
Score = 24.5 bits (53), Expect = 9.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 192 SHHHHHHPVAPVSR 205
SHHHHHH V R
Sbjct: 3 SHHHHHHSSGLVPR 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.448
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 936,166
Number of extensions: 42937
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 60
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)