Query psy15062
Match_columns 375
No_of_seqs 129 out of 1212
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 19:28:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865|consensus 100.0 5.5E-61 1.2E-65 438.9 19.9 299 4-375 107-410 (545)
2 cd02668 Peptidase_C19L A subfa 100.0 7.4E-60 1.6E-64 434.1 27.6 291 7-373 1-324 (324)
3 cd02663 Peptidase_C19G A subfa 100.0 2.7E-59 6E-64 425.7 25.3 286 7-373 1-300 (300)
4 cd02660 Peptidase_C19D A subfa 100.0 2.5E-58 5.5E-63 425.9 26.6 314 6-373 1-328 (328)
5 cd02657 Peptidase_C19A A subfa 100.0 5.4E-58 1.2E-62 419.4 27.3 291 7-373 1-305 (305)
6 cd02658 Peptidase_C19B A subfa 100.0 4.4E-58 9.5E-63 420.9 26.4 291 7-373 1-311 (311)
7 cd02671 Peptidase_C19O A subfa 100.0 1.1E-57 2.4E-62 416.9 27.3 295 2-373 21-332 (332)
8 cd02664 Peptidase_C19H A subfa 100.0 6.2E-58 1.3E-62 421.0 25.2 279 7-373 1-327 (327)
9 cd02669 Peptidase_C19M A subfa 100.0 3.7E-57 8E-62 429.6 29.5 305 2-373 116-440 (440)
10 cd02661 Peptidase_C19E A subfa 100.0 3.6E-57 7.8E-62 414.3 27.5 300 5-373 1-304 (304)
11 cd02659 peptidase_C19C A subfa 100.0 2E-57 4.3E-62 421.0 25.8 298 4-375 1-332 (334)
12 cd02667 Peptidase_C19K A subfa 100.0 1.6E-56 3.4E-61 403.2 23.7 249 7-373 1-279 (279)
13 COG5560 UBP12 Ubiquitin C-term 100.0 1.9E-56 4.2E-61 410.2 17.7 365 3-375 263-822 (823)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 3.7E-52 8E-57 352.4 18.2 325 5-374 71-413 (415)
15 KOG0944|consensus 100.0 5.3E-52 1.2E-56 383.9 19.0 298 2-374 304-761 (763)
16 cd02662 Peptidase_C19F A subfa 100.0 1.8E-51 3.9E-56 361.7 19.9 214 7-373 1-240 (240)
17 cd02674 Peptidase_C19R A subfa 100.0 3.3E-48 7.2E-53 340.6 19.5 224 7-373 1-230 (230)
18 PF00443 UCH: Ubiquitin carbox 100.0 2.2E-47 4.8E-52 342.8 21.6 258 5-372 1-269 (269)
19 KOG1868|consensus 100.0 9E-48 2E-52 368.2 15.9 332 2-374 298-645 (653)
20 cd02666 Peptidase_C19J A subfa 100.0 5.6E-47 1.2E-51 345.6 16.5 292 5-373 1-343 (343)
21 KOG1866|consensus 100.0 1.6E-47 3.5E-52 356.7 4.8 301 2-375 92-434 (944)
22 cd02665 Peptidase_C19I A subfa 100.0 1.5E-45 3.3E-50 315.5 14.6 221 7-373 1-228 (228)
23 cd02673 Peptidase_C19Q A subfa 100.0 1.2E-44 2.7E-49 316.3 18.2 243 8-373 2-245 (245)
24 COG5207 UBP14 Isopeptidase T [ 100.0 1.7E-43 3.6E-48 317.6 16.5 301 2-374 299-748 (749)
25 cd02257 Peptidase_C19 Peptidas 100.0 7.7E-43 1.7E-47 310.0 19.9 245 7-373 1-255 (255)
26 KOG1867|consensus 100.0 1.4E-42 3.1E-47 327.0 18.0 315 3-374 159-483 (492)
27 COG5077 Ubiquitin carboxyl-ter 100.0 4.9E-43 1.1E-47 327.4 8.5 296 2-375 190-511 (1089)
28 KOG1870|consensus 100.0 4.9E-41 1.1E-45 338.5 17.9 360 2-375 243-841 (842)
29 KOG1873|consensus 100.0 3.3E-40 7.2E-45 308.7 8.8 361 3-374 203-876 (877)
30 cd02672 Peptidase_C19P A subfa 100.0 3.9E-39 8.4E-44 285.4 14.3 239 2-373 12-268 (268)
31 PF13423 UCH_1: Ubiquitin carb 100.0 1.6E-36 3.4E-41 275.4 23.0 285 6-350 1-295 (295)
32 KOG1863|consensus 100.0 6.9E-38 1.5E-42 323.1 13.9 298 3-375 167-485 (1093)
33 KOG4598|consensus 100.0 1.4E-38 3E-43 295.0 3.9 277 2-374 84-440 (1203)
34 cd02670 Peptidase_C19N A subfa 100.0 1E-34 2.2E-39 250.9 15.3 127 227-373 81-241 (241)
35 KOG1872|consensus 100.0 1.6E-34 3.4E-39 260.0 6.9 300 5-374 105-468 (473)
36 KOG1864|consensus 100.0 2.5E-33 5.5E-38 268.4 15.4 327 4-375 231-572 (587)
37 KOG1871|consensus 100.0 1.3E-32 2.8E-37 241.3 12.8 333 4-375 27-419 (420)
38 KOG2026|consensus 100.0 2.7E-32 5.8E-37 238.3 14.4 301 3-375 132-441 (442)
39 KOG1275|consensus 99.9 1.6E-21 3.5E-26 187.0 14.2 325 3-372 497-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 99.3 8.6E-11 1.9E-15 99.1 12.3 141 139-351 113-254 (275)
41 KOG1887|consensus 98.0 1.3E-06 2.8E-11 85.4 0.5 232 89-374 547-789 (806)
42 KOG3556|consensus 97.9 4E-06 8.7E-11 77.6 2.1 98 4-106 367-471 (724)
43 KOG1864|consensus 97.4 0.0003 6.6E-09 68.9 6.7 106 8-113 34-156 (587)
44 PF08715 Viral_protease: Papai 96.7 0.011 2.4E-07 53.5 8.9 78 4-107 101-179 (320)
45 PF05408 Peptidase_C28: Foot-a 95.4 0.0087 1.9E-07 48.6 1.7 29 327-357 138-166 (193)
46 PF05408 Peptidase_C28: Foot-a 83.6 3.4 7.4E-05 33.9 5.6 22 4-25 32-53 (193)
47 PF03292 Pox_P4B: Poxvirus P4B 77.1 4.5 9.7E-05 39.6 5.0 72 265-352 479-573 (666)
48 PF00770 Peptidase_C5: Adenovi 63.9 13 0.00029 30.2 4.3 35 314-348 19-54 (183)
49 KOG2906|consensus 61.4 18 0.00039 26.4 4.1 20 244-263 67-86 (105)
50 PF13405 EF-hand_6: EF-hand do 54.6 29 0.00063 19.1 3.6 27 54-80 1-27 (31)
51 PF14353 CpXC: CpXC protein 53.4 15 0.00032 28.6 3.0 18 237-254 33-50 (128)
52 PF01473 CW_binding_1: Putativ 49.7 24 0.00052 17.1 2.4 14 333-348 3-16 (19)
53 KOG1867|consensus 47.2 5.5 0.00012 38.9 -0.4 101 4-106 76-181 (492)
54 PF02099 Josephin: Josephin; 44.7 36 0.00079 27.6 4.0 33 314-353 99-131 (157)
55 COG3478 Predicted nucleic-acid 44.3 17 0.00037 24.2 1.7 32 244-275 6-39 (68)
56 PF00036 EF-hand_1: EF hand; 43.7 53 0.0012 18.0 3.4 27 55-81 2-28 (29)
57 PF10748 DUF2531: Protein of u 42.5 66 0.0014 25.2 4.9 34 309-349 33-66 (132)
58 PF13499 EF-hand_7: EF-hand do 42.2 76 0.0016 20.8 4.8 50 54-106 1-50 (66)
59 PF10264 Stork_head: Winged he 42.0 1.2E+02 0.0025 21.6 5.6 55 49-108 10-64 (80)
60 PF14205 Cys_rich_KTR: Cystein 35.8 26 0.00056 22.6 1.4 13 159-171 3-15 (55)
61 KOG1871|consensus 33.6 20 0.00044 33.3 1.0 37 4-40 177-213 (420)
62 cd01269 PLX Pollux (PLX) Phosp 32.4 69 0.0015 24.7 3.5 27 310-336 81-107 (129)
63 PF13002 LDB19: Arrestin_N ter 31.3 1.5E+02 0.0033 24.9 5.6 65 244-320 24-88 (191)
64 KOG2757|consensus 30.9 1.2E+02 0.0026 28.2 5.4 80 18-100 147-230 (411)
65 PF09871 DUF2098: Uncharacteri 29.6 86 0.0019 22.8 3.5 35 315-351 6-40 (91)
66 COG0093 RplN Ribosomal protein 27.2 1.3E+02 0.0028 23.0 4.1 34 313-356 57-90 (122)
67 smart00054 EFh EF-hand, calciu 25.9 96 0.0021 15.2 2.8 26 55-80 2-27 (29)
68 PHA02131 hypothetical protein 24.8 81 0.0017 20.3 2.3 24 327-355 22-45 (70)
69 PF13202 EF-hand_5: EF hand; P 24.4 1.2E+02 0.0026 15.8 3.1 24 55-78 1-24 (25)
70 PRK09750 hypothetical protein; 21.7 1.6E+02 0.0035 19.3 3.2 36 310-359 2-37 (64)
71 COG3012 Uncharacterized protei 21.6 1.3E+02 0.0029 23.8 3.5 12 339-350 119-130 (151)
72 KOG1491|consensus 21.0 47 0.001 30.7 1.0 20 3-22 23-42 (391)
73 PF08882 Acetone_carb_G: Aceto 20.8 83 0.0018 23.7 2.1 23 160-183 24-46 (112)
74 COG0012 Predicted GTPase, prob 20.5 48 0.001 31.0 1.0 22 2-23 4-25 (372)
No 1
>KOG1865|consensus
Probab=100.00 E-value=5.5e-61 Score=438.89 Aligned_cols=299 Identities=32% Similarity=0.573 Sum_probs=269.9
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
-..||.|.|||||+|||||||.+.||+.++|++..+. ..+.....+++++|+..+.........+++|..|+.-|..+.
T Consensus 107 ~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs-~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~ 185 (545)
T KOG1865|consen 107 VGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHS-RSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLRNIS 185 (545)
T ss_pred CCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhh-hhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhc
Confidence 3689999999999999999999999999999987653 444467889999999999988888877999999999999999
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEE
Q psy15062 84 KKFDGNQQQDAQEFLLYLLAALNEEAK-VVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVR 162 (375)
Q Consensus 84 ~~~~~~~QqDa~E~l~~ll~~L~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~ 162 (375)
..|..|+|+||||||.++++.++..+- ..... ....+...+|.++|+|-+.+.++
T Consensus 186 ~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~------------------------~~~sq~ttlv~~iFGG~LrS~vk 241 (545)
T KOG1865|consen 186 AHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQV------------------------DPRSQDTTLVHQIFGGYLRSQIK 241 (545)
T ss_pred ccccCCchhhHHHHHHHHHHHHHHhhcCCCccC------------------------Ccccccceehhhhhccchhhcee
Confidence 999999999999999999999998872 11000 01123457899999999999999
Q ss_pred ecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccccccc
Q psy15062 163 CSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLH 242 (375)
Q Consensus 163 C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~ 242 (375)
|..|.+++...|+...|.|.|.... +|+++|++|+..|.++
T Consensus 242 C~~C~~vS~tyE~~~dltvei~d~~---------------------------------------sl~~AL~qFt~~E~L~ 282 (545)
T KOG1865|consen 242 CLHCKGVSDTYEPYLDLTLEIQDAS---------------------------------------SLQQALEQFTKPEKLD 282 (545)
T ss_pred cccCCCcccccccccceEEEeccch---------------------------------------hHHHHHHHhhhHHhhC
Confidence 9999999999999999999998332 8999999999999997
Q ss_pred c----cccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEe
Q psy15062 243 N----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVS 318 (375)
Q Consensus 243 ~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv 318 (375)
+ .|++|+++..+.|++.|.++|.||+|+|+||......||.++|.||++ |||.+|++.+. .....|.|+|||
T Consensus 283 gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~-LDl~PyMS~~~---e~s~~Y~LYavl 358 (545)
T KOG1865|consen 283 GENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPET-LDLQPYMSQPN---EGSTVYKLYAVL 358 (545)
T ss_pred CccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCccc-ccccccccCCC---CCCceEEEEEEE
Confidence 7 899999999999999999999999999999999879999999999999 99999999553 467899999999
Q ss_pred eeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 319 NHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 319 ~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
+|.|....+|||+||||. ..|.||.+||+.|+.++.+.|++.. ||||||.|+
T Consensus 359 VH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~~~VLsq~----AYmLfY~R~ 410 (545)
T KOG1865|consen 359 VHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSIESVLSQQ----AYILFYARK 410 (545)
T ss_pred EeccccccCCceEEEEEc-CCCceEEccCceeeeccccceeccc----ceEEEEEee
Confidence 999999899999999999 5899999999999999999999998 999999984
No 2
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.4e-60 Score=434.05 Aligned_cols=291 Identities=31% Similarity=0.541 Sum_probs=250.6
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCC--CC----C--CChhhHHHHHHHHHHHHhcCCCccccHHHHHHH
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIH--PD----S--KSQGQLVDALVNFMKMMWSSGNLVLNTKAILLA 78 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~--~~----~--~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~ 78 (375)
||.|+||||||||+||+|+++|+||++++....... .. . ....+++++|+.||.+|+.+....++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987653211 00 0 123589999999999999988889999999999
Q ss_pred HhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeee
Q psy15062 79 LRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLR 158 (375)
Q Consensus 79 l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~ 158 (375)
+. +..++||||+||+..||+.|++++..... ....+++.++|.|++.
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~----------------------------~~~~~~i~~~F~G~~~ 127 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN----------------------------PDLKNIVQDLFRGEYS 127 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC----------------------------CcccchhhhhcceEEE
Confidence 85 67889999999999999999998742210 1124678899999999
Q ss_pred ceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccc
Q psy15062 159 SSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238 (375)
Q Consensus 159 ~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~ 238 (375)
..++|..|+..+...++|..|+|+++... +|+++|+.++..
T Consensus 128 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~~---------------------------------------sl~~~L~~~~~~ 168 (324)
T cd02668 128 YVTQCSKCGRESSLPSKFYELELQLKGHK---------------------------------------TLEECIDEFLKE 168 (324)
T ss_pred EEEEeCCCCCccccccccEEEEEEecccC---------------------------------------CHHHHHHHhhCc
Confidence 99999999999988999999999998533 899999999999
Q ss_pred ccccc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCce
Q psy15062 239 ETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRY 310 (375)
Q Consensus 239 e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~ 310 (375)
|.+++ .|++|+.+..+.++..|.++|++|+|||+||.++. ..|+...|.||.+ |||++|+.... ....
T Consensus 169 e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~-Ldl~~~~~~~~---~~~~ 244 (324)
T cd02668 169 EQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEI-LDMGEYLAESD---EGSY 244 (324)
T ss_pred eecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCe-Eechhhccccc---CCCc
Confidence 98865 79999999999999999999999999999999874 6899999999998 99999986543 4567
Q ss_pred eeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccc-----------------cCCCceEEEEEE
Q psy15062 311 TYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA-----------------EAEHGAYILVYQ 373 (375)
Q Consensus 311 ~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~-----------------~~~~~~yll~Y~ 373 (375)
.|+|+|||+|.|.++++|||+||+|...+++|++|||+.|++++++.|... ....+||||||+
T Consensus 245 ~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 245 VYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 899999999999877999999999986568999999999999998888521 135779999996
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-59 Score=425.70 Aligned_cols=286 Identities=31% Similarity=0.498 Sum_probs=242.7
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCc--cccHHHHHHHHhhhcc
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNL--VLNTKAILLALRSYTK 84 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~--~v~~~~~~~~l~~~~~ 84 (375)
||.|+||||||||+||+|++ .+++.+|+.+|.+|+.+... .++|..|..+|....+
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~ 58 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE 58 (300)
T ss_pred CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence 89999999999999999987 37888999999999987543 7999999999999889
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEec
Q psy15062 85 KFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCS 164 (375)
Q Consensus 85 ~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~ 164 (375)
.|..++||||+|||..||+.|+++++......... .. ..+........+++.++|+|.+...++|.
T Consensus 59 ~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~-~~-------------~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 59 LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN-RK-------------LNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc-cc-------------ccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 99999999999999999999999984332111000 00 00011122346789999999999999999
Q ss_pred CCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-
Q psy15062 165 NCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN- 243 (375)
Q Consensus 165 ~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~- 243 (375)
.|+..+...++|..|+|+|+... +|+++|+.|+.+|.+++
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~---------------------------------------sl~~~L~~~~~~E~l~~~ 165 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNT---------------------------------------SITSCLRQFSATETLCGR 165 (300)
T ss_pred CCCCCccccceeEEeccCCCCcC---------------------------------------CHHHHHHHhhcccccCCC
Confidence 99999999999999999998743 89999999999999876
Q ss_pred ---cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEE
Q psy15062 244 ---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCA 316 (375)
Q Consensus 244 ---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~ 316 (375)
.|++|+.+..+.++..|.++|++|+|||+||.++. ..|+..+|.||.+ |+|..+.... ......|+|+|
T Consensus 166 ~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~-L~~~~~~~~~---~~~~~~Y~L~~ 241 (300)
T cd02663 166 NKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE-LRLFNTTDDA---ENPDRLYELVA 241 (300)
T ss_pred CcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcE-Eecccccccc---CCCCeEEEEEE
Confidence 79999999999999999999999999999999875 5799999999999 9998764332 23457999999
Q ss_pred EeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcc----ccCCCceEEEEEE
Q psy15062 317 VSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVES----AEAEHGAYILVYQ 373 (375)
Q Consensus 317 vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~----~~~~~~~yll~Y~ 373 (375)
||+|.|.++++|||+||+|. +++|++|||+.|+++++++|.. .....+||||||+
T Consensus 242 vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 242 VVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99999987799999999999 6999999999999999999962 1235779999996
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-58 Score=425.92 Aligned_cols=314 Identities=32% Similarity=0.572 Sum_probs=259.5
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCC-CCCCCChhhHHHHHHHHHHHHhcC-CCccccHHHHHHHHhhhc
Q psy15062 6 NGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI-HPDSKSQGQLVDALVNFMKMMWSS-GNLVLNTKAILLALRSYT 83 (375)
Q Consensus 6 ~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~-~~~~v~~~~~~~~l~~~~ 83 (375)
+||.|+||||||||+||+|+++|+||++++...... ........++.++|+.+|..|+.. ....+.|..++.++....
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999998864321 122345678999999999999544 344889999999998888
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEe
Q psy15062 84 KKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRC 163 (375)
Q Consensus 84 ~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C 163 (375)
+.|..++||||+|||..||+.|++++....... .......++|.++|+|++...++|
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-----------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-----------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccc-----------------------cccccCCceeEEecccEEEeeeEc
Confidence 889999999999999999999999984322110 001123468999999999999999
Q ss_pred cCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc
Q psy15062 164 SNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN 243 (375)
Q Consensus 164 ~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~ 243 (375)
..|++.+...++|..|+|++|........ ..........+|+++|+.++.+|.+.+
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~~------------------------~~~~~~~~~~sl~~~L~~~~~~e~~~~ 193 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSWA------------------------LGESGVSGTPTLSDCLDRFTRPEKLGD 193 (328)
T ss_pred CCCCCccceecccceeeeecccccccccc------------------------ccccCCCCCCCHHHHHHHhcCccccCC
Confidence 99999999999999999999876421000 000111223499999999999998877
Q ss_pred ---cccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCcccccccC------CCCCCCcee
Q psy15062 244 ---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISAS------GRRVESRYT 311 (375)
Q Consensus 244 ---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~------~~~~~~~~~ 311 (375)
.|++|+.+..+.++..|.++|++|+|+|+||.++. ..|+...|.||.+ |+|.+|+... .........
T Consensus 194 ~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~ 272 (328)
T cd02660 194 FAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLE-LNMTPYTSSSIGDTQDSNSLDPDYT 272 (328)
T ss_pred CCccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCE-echhhhcccccccccccccCCCCce
Confidence 69999999999999999999999999999999875 5899999999999 9999998752 223356689
Q ss_pred eEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 312 YDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 312 Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
|+|+|||.|.|+. .+|||+||+|.. +++|++|||+.|+++++++|.... ||||||.
T Consensus 273 Y~L~avi~H~G~~-~~GHY~~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~----ayil~Y~ 328 (328)
T cd02660 273 YDLFAVVVHKGTL-DTGHYTAYCRQG-DGQWFKFDDAMITRVSEEEVLKSQ----AYLLFYH 328 (328)
T ss_pred EEEEEEEEeeccC-CCCcEEEEEECC-CCcEEEEECCeeEECCHHHhcCCC----cEEEEeC
Confidence 9999999999976 889999999994 699999999999999999998776 9999995
No 5
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-58 Score=419.36 Aligned_cols=291 Identities=30% Similarity=0.432 Sum_probs=248.6
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|+||||||||+||+|+++|+||+++++.............++.++|+.||.+|+.+. ..++|..|...+....+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~~~f 79 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAFPQF 79 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHCcCc
Confidence 899999999999999999999999999987654322123456789999999999999865 3899999999999888877
Q ss_pred C------CCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeece
Q psy15062 87 D------GNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSS 160 (375)
Q Consensus 87 ~------~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~ 160 (375)
. .++||||+||+..||+.|+++++.. ....+.|.++|+|.+...
T Consensus 80 ~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~------------------------------~~~~~~i~~~F~g~~~~~ 129 (305)
T cd02657 80 AEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA------------------------------GSKGSFIDQLFGIELETK 129 (305)
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHhccc------------------------------CCCCcHHHHhhceEEEEE
Confidence 4 4589999999999999999987321 123567999999999999
Q ss_pred EEecCCC-CcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccc
Q psy15062 161 VRCSNCK-RTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGE 239 (375)
Q Consensus 161 ~~C~~C~-~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e 239 (375)
++|..|+ ..+...++|..|+++|+.... ..+|+++|+.++.++
T Consensus 130 ~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~------------------------------------~~~l~~~L~~~~~~~ 173 (305)
T cd02657 130 MKCTESPDEEEVSTESEYKLQCHISITTE------------------------------------VNYLQDGLKKGLEEE 173 (305)
T ss_pred EEcCCCCCCCccccccceEEEeecCCCcc------------------------------------cccHHHHHHHhhhhh
Confidence 9999999 788889999999999987521 017999999998765
Q ss_pred cccccccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCceeeEEE
Q psy15062 240 TLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLC 315 (375)
Q Consensus 240 ~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~ 315 (375)
.. ..|+.|+......+..+|.++|++|+|||+||.++. ..|+...|.||.+ ||+.+++.. ...|+|.
T Consensus 174 ~~-~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~-------~~~Y~L~ 244 (305)
T cd02657 174 IE-KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFE-LDLYELCTP-------SGYYELV 244 (305)
T ss_pred hh-hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCce-EecccccCC-------CCcEEEE
Confidence 43 479999988888999999999999999999999764 5799999999999 999998763 3589999
Q ss_pred EEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccc---cCCCceEEEEEE
Q psy15062 316 AVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA---EAEHGAYILVYQ 373 (375)
Q Consensus 316 ~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~---~~~~~~yll~Y~ 373 (375)
|||+|.|.++.+|||+||+|.+.+++|+.|||+.|++++.++|... ....+||||||+
T Consensus 245 ~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 245 AVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999877999999999996558999999999999999999742 234679999996
No 6
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.4e-58 Score=420.93 Aligned_cols=291 Identities=29% Similarity=0.438 Sum_probs=244.1
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-CCCCCCChhhHHHHHHHHHHHHhcCCC--------------cccc
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-IHPDSKSQGQLVDALVNFMKMMWSSGN--------------LVLN 71 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~--------------~~v~ 71 (375)
||.|+||||||||+||+|+++|+||+++++.... ......+..++.++|++++..|+.... ..++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 8999999999999999999999999999763221 122234567899999999999986432 3689
Q ss_pred HHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCcccc
Q psy15062 72 TKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSD 151 (375)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (375)
|..|..++....+.|..++||||+||+..||+.|+++++.. ....+.+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------------------~~~~~~~ 128 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN--------------------------------LGLNPND 128 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc--------------------------------ccCCchh
Confidence 99999999998999999999999999999999999987311 1234778
Q ss_pred ccceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHH
Q psy15062 152 IFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYEC 231 (375)
Q Consensus 152 ~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~ 231 (375)
+|.+.+...++|..|+..+...+.+..|+|++|........ .........+|+++
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~-------------------------~~~~~~~~~sl~~~ 183 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKE-------------------------EGELVYEPVPLEDC 183 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccc-------------------------cccccCCCCCHHHH
Confidence 99999999999999998888899999999999875421000 00011122389999
Q ss_pred HhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCcccccccCCCCCCC
Q psy15062 232 LNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISASGRRVES 308 (375)
Q Consensus 232 l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~ 308 (375)
|+.|+..|.++.+|++|+.+..+.++.+|.++|++|+|+|+||.++. ..|+...|.+|.+ + .
T Consensus 184 L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~-l--------------~ 248 (311)
T cd02658 184 LKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEE-L--------------G 248 (311)
T ss_pred HHHHcCcccccccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCc-C--------------C
Confidence 99999999999899999999999999999999999999999999853 6799999999987 5 2
Q ss_pred ceeeEEEEEeeeccCCCCCCeEEEEEEeC--CCCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 309 RYTYDLCAVSNHIGKTALYGHYTAYCRRE--GTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 309 ~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~--~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
...|+|+|||+|.|.++++|||+||+|.+ .+++|++|||+.|++++..++.... ||||||+
T Consensus 249 ~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~----~YilfY~ 311 (311)
T cd02658 249 PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKL----GYIYFYQ 311 (311)
T ss_pred CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCc----ceEEEEC
Confidence 25799999999999877999999999995 3489999999999999999987666 9999996
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-57 Score=416.91 Aligned_cols=295 Identities=29% Similarity=0.425 Sum_probs=236.5
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
.+|++||.|+||||||||+||+|+++|+||+.+.+.... .......+.+..++..++......+.|..|..++..
T Consensus 21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~-----~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l~~ 95 (332)
T cd02671 21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL-----ISSVEQLQSSFLLNPEKYNDELANQAPRRLLNALRE 95 (332)
T ss_pred CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc-----cCcHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHH
Confidence 478999999999999999999999999999998765311 111111222223334444444446679999999999
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
..+.|..+.||||+|||..||+.|+.. +.++|+|.+...+
T Consensus 96 ~~~~f~~~~QQDA~EFl~~LLd~L~~~----------------------------------------i~~~F~g~~~~~~ 135 (332)
T cd02671 96 VNPMYEGYLQHDAQEVLQCILGNIQEL----------------------------------------VEKDFQGQLVLRT 135 (332)
T ss_pred hccccCCccccCHHHHHHHHHHHHHHH----------------------------------------HHhhhceEEEEEE
Confidence 999999999999999999999999853 6789999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
+|..|+..+...++|..|+|+|+......... + .........+..+|+++|+.|+..|.+
T Consensus 136 ~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~--------------~------~~~~~~~~~~~~tL~~~L~~f~~~E~l 195 (332)
T cd02671 136 RCLECETFTERREDFQDISVPVQESELSKSEE--------------S------SEISPDPKTEMKTLKWAISQFASVERI 195 (332)
T ss_pred EeCCCCCeeceecccEEEEEEeCCCccccccc--------------c------cccccccccccCCHHHHHHHhCCccee
Confidence 99999999999999999999999764211100 0 000000001123899999999999998
Q ss_pred cc----cccccccccceeEEEEeccCCceEEEEEcccccc--------ccccccCcccCCCCCCCcccccccCCCCCCCc
Q psy15062 242 HN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSN--------FTQKVTSPIKFPREGLDMEYYISASGRRVESR 309 (375)
Q Consensus 242 ~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~--------~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~ 309 (375)
.+ +|++|+....+.+...|.++|++|+|||+||.++ ...|+...|.||.+ |++.++.... ..
T Consensus 196 ~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~-L~~~~~~~~~-----~~ 269 (332)
T cd02671 196 VGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLK-LSLEEWSTKP-----KN 269 (332)
T ss_pred cCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccc-cccccccCCC-----CC
Confidence 65 8999999999999999999999999999999964 26799999999999 9998765432 45
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccc-----cCCCceEEEEEE
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA-----EAEHGAYILVYQ 373 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~-----~~~~~~yll~Y~ 373 (375)
..|+|+|||+|.|.+.++|||+||+| |++|||+.|+.++++++... ....+||||||+
T Consensus 270 ~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 270 DVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 79999999999998778999999998 99999999999998887631 235779999995
No 8
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-58 Score=421.01 Aligned_cols=279 Identities=31% Similarity=0.523 Sum_probs=238.1
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHH-HHHHHhhhccC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKA-ILLALRSYTKK 85 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~-~~~~l~~~~~~ 85 (375)
||.|+||||||||+||+|+++|+||+++++...+ .......+..+|+.+|..|.......+.|.. +..++. .+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~---~~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~ 75 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLP---RLGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPW 75 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcc---ccCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--ccc
Confidence 8999999999999999999999999999987632 1123456788999999999877666666665 655543 467
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecC
Q psy15062 86 FDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSN 165 (375)
Q Consensus 86 ~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~ 165 (375)
|..++||||+||+..||+.|+. +|.++|.|++...++|..
T Consensus 76 f~~~~QqDa~EFl~~lLd~l~~----------------------------------------~i~~~F~G~~~~~i~C~~ 115 (327)
T cd02664 76 FTPGSQQDCSEYLRYLLDRLHT----------------------------------------LIEKMFGGKLSTTIRCLN 115 (327)
T ss_pred cCCCCcCCHHHHHHHHHHHHHH----------------------------------------HHHhhCcEEeEeEEEcCC
Confidence 8999999999999999999982 378999999999999999
Q ss_pred CCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc--
Q psy15062 166 CKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-- 243 (375)
Q Consensus 166 C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~-- 243 (375)
|+..+...+.|..|+|+|| +++++|+.++..|.+++
T Consensus 116 C~~~s~~~e~f~~l~L~i~------------------------------------------sl~~~l~~~~~~E~l~g~n 153 (327)
T cd02664 116 CNSTSARTERFRDLDLSFP------------------------------------------SVQDLLNYFLSPEKLTGDN 153 (327)
T ss_pred CCCEecccccceeeecCCC------------------------------------------CHHHHHHHhcCeeEccCCC
Confidence 9999988999999999886 68999999999988875
Q ss_pred --cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccC---------------
Q psy15062 244 --TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISAS--------------- 302 (375)
Q Consensus 244 --~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~--------------- 302 (375)
+|++|+....+.++..|.++|++|+|||+||.++. ..|+..+|.||.+ |+|..+....
T Consensus 154 ~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~-ldl~~~~~~~~~~~~~~~~~~~~~~ 232 (327)
T cd02664 154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEV-LSLPVRVESKSSESPLEKKEEESGD 232 (327)
T ss_pred ceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCE-EecCccccccccccccccccccccc
Confidence 89999999999999999999999999999999875 5799999999999 9999886421
Q ss_pred -CCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCC--------------------CCcEEEecCCceeeeCchhhcc-
Q psy15062 303 -GRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREG--------------------TGRWYLYDDTVVSPVDAQTVES- 360 (375)
Q Consensus 303 -~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~--------------------~~~W~~~nD~~V~~~~~~~v~~- 360 (375)
.........|+|.|||+|.|.++++|||+||+|.+. .++|+.|||+.|+.++.++|..
T Consensus 233 ~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~ 312 (327)
T cd02664 233 DGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNV 312 (327)
T ss_pred cccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHh
Confidence 111234679999999999998779999999999853 3789999999999999999975
Q ss_pred --ccCCCceEEEEEE
Q psy15062 361 --AEAEHGAYILVYQ 373 (375)
Q Consensus 361 --~~~~~~~yll~Y~ 373 (375)
...+.+||||||+
T Consensus 313 ~~~~~~~~aYlLfY~ 327 (327)
T cd02664 313 TSRFPKDTPYILFYE 327 (327)
T ss_pred hCCCCCCCEEEEEeC
Confidence 2345679999996
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-57 Score=429.57 Aligned_cols=305 Identities=27% Similarity=0.391 Sum_probs=248.9
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCC--ccccHHHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGN--LVLNTKAILLAL 79 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~v~~~~~~~~l 79 (375)
.+|++||.|+||||||||+||+|+++|+||++++...... .......++.++|..+++.+|++.. ..++|..|+.++
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l 194 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHH
Confidence 5799999999999999999999999999999999754321 1112456899999999999998763 489999999999
Q ss_pred hhhc-cCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeee
Q psy15062 80 RSYT-KKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLR 158 (375)
Q Consensus 80 ~~~~-~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~ 158 (375)
.... +.|..++||||+|||.+||+.|++++... .....++|.++|+|++.
T Consensus 195 ~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~-----------------------------~~~~~~ii~~~F~G~l~ 245 (440)
T cd02669 195 SKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS-----------------------------KKPNSSIIHDCFQGKVQ 245 (440)
T ss_pred HhhcccccCCcccCCHHHHHHHHHHHHHHHhccC-----------------------------CCCCCCcceeccCceEE
Confidence 8764 56889999999999999999999987421 12246789999999999
Q ss_pred ceEEecCCC--------------C-cceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCC
Q psy15062 159 SSVRCSNCK--------------R-TSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPP 223 (375)
Q Consensus 159 ~~~~C~~C~--------------~-~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
..++|..|. . .+...++|+.|+|+||......... ....+|
T Consensus 246 ~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~---------------------~~~~l~--- 301 (440)
T cd02669 246 IETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGN---------------------EENIIP--- 301 (440)
T ss_pred EEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccc---------------------cccccC---
Confidence 999987554 2 3455789999999999764321100 000011
Q ss_pred CCCCHHHHHhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCccccccc
Q psy15062 224 GGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISA 301 (375)
Q Consensus 224 ~~~sl~~~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~ 301 (375)
..++.++|+.|. |+.|.....+.++++|.++|+||+|||+||.++. .+|+...|.||.+.|||.+|+..
T Consensus 302 -~~~l~e~L~ky~--------~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~ 372 (440)
T cd02669 302 -QVPLKQLLKKYD--------GKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHF 372 (440)
T ss_pred -cccHHHHHHhcC--------CccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCc
Confidence 128999998765 4556666777899999999999999999999875 78999999999965899999975
Q ss_pred CCCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 302 SGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 302 ~~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
..........|+|+|||+|.|..+++|||+||+|+..+++|+.|||+.|+++++++|...+ ||||||+
T Consensus 373 ~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~e----aYll~Y~ 440 (440)
T cd02669 373 DKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSE----SYIQIWE 440 (440)
T ss_pred cccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCC----ceEEEeC
Confidence 5444456789999999999998879999999999866799999999999999999999888 9999996
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-57 Score=414.31 Aligned_cols=300 Identities=35% Similarity=0.567 Sum_probs=259.2
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhcc
Q psy15062 5 LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTK 84 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~ 84 (375)
++||.|+||||||||+||+|+++|+||+++++..... .......++.++|..++.+++......+.|..|..++....+
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 79 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-DCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISK 79 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-hccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHH
Confidence 6899999999999999999999999999998644321 122345689999999999999888789999999999999989
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEec
Q psy15062 85 KFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCS 164 (375)
Q Consensus 85 ~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~ 164 (375)
.|..+.||||+|||..||+.|+.++......... ........+++.++|+|++...++|.
T Consensus 80 ~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~F~g~~~~~~~C~ 139 (304)
T cd02661 80 HFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA--------------------VDPSSQETTLVQQIFGGYLRSQVKCL 139 (304)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc--------------------cCccccCCChhhhcCCcEEeeeEEeC
Confidence 9999999999999999999999886321111000 00112345689999999999999999
Q ss_pred CCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-
Q psy15062 165 NCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN- 243 (375)
Q Consensus 165 ~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~- 243 (375)
.|+..+...+.+..|+|+++... +++++|+.++..+.+++
T Consensus 140 ~C~~~s~~~e~~~~l~l~i~~~~---------------------------------------~l~~~l~~~~~~e~~~~~ 180 (304)
T cd02661 140 NCKHVSNTYDPFLDLSLDIKGAD---------------------------------------SLEDALEQFTKPEQLDGE 180 (304)
T ss_pred CCCCCcCccccceeeeeecCCCC---------------------------------------cHHHHHHHhcCceeeCCC
Confidence 99999999999999999998653 89999999999888776
Q ss_pred ---cccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeee
Q psy15062 244 ---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNH 320 (375)
Q Consensus 244 ---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H 320 (375)
.|++|++...+.++..+.++|++|+|+|+||.++...|+...|.||.+ |+|.+++.... .....|+|+|||+|
T Consensus 181 ~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~-L~l~~~~~~~~---~~~~~Y~L~~vi~H 256 (304)
T cd02661 181 NKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPET-LDLSPYMSQPN---DGPLKYKLYAVLVH 256 (304)
T ss_pred CCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCe-echhhccccCC---CCCceeeEEEEEEE
Confidence 799999999999999999999999999999999866899999999999 99999987642 46679999999999
Q ss_pred ccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 321 IGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 321 ~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
.|..+.+|||+||+|. .+++|++|||+.|+++++++|.... ||||||.
T Consensus 257 ~G~~~~~GHY~~~~~~-~~~~W~~~nD~~V~~v~~~~v~~~~----aYil~Y~ 304 (304)
T cd02661 257 SGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQK----AYILFYI 304 (304)
T ss_pred CCCCCCCcCCEEEEEC-CCCCEEEEeCCeeEECCHHHhcCCC----cEEEEeC
Confidence 9998899999999998 4789999999999999999998776 9999994
No 11
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-57 Score=421.04 Aligned_cols=298 Identities=33% Similarity=0.535 Sum_probs=250.5
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
|++||.|+||||||||+||+|+++|+||+++++... .........+.++|+.+|.+|+......+.+..+..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPP--TEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCC--cccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCC
Confidence 799999999999999999999999999999998631 112245567999999999999987765555555542222223
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEe
Q psy15062 84 KKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRC 163 (375)
Q Consensus 84 ~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C 163 (375)
..|..++||||+|||..||+.|+++++.. ...+.+.++|.|.+...++|
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~~~~C 127 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT-------------------------------GQEGLIKNLFGGKLVNYIIC 127 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC-------------------------------cccchhhhhCceEEEeEEEe
Confidence 46788999999999999999999987421 12356899999999999999
Q ss_pred cCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc
Q psy15062 164 SNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN 243 (375)
Q Consensus 164 ~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~ 243 (375)
..|+..+...++|..|+|+++... +++++|+.++..+.+++
T Consensus 128 ~~C~~~s~~~e~f~~l~l~i~~~~---------------------------------------~l~~~l~~~~~~e~l~~ 168 (334)
T cd02659 128 KECPHESEREEYFLDLQVAVKGKK---------------------------------------NLEESLDAYVQGETLEG 168 (334)
T ss_pred cCCCceecccccceEEEEEcCCCC---------------------------------------CHHHHHHHhcCeeEecC
Confidence 999999999999999999998643 89999999999888876
Q ss_pred ----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCC--------CCC
Q psy15062 244 ----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGR--------RVE 307 (375)
Q Consensus 244 ----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~--------~~~ 307 (375)
.|++|+....+.++..|.++|++|+|+|+||.++. ..|+...|.||.+ |+|+.++..... ...
T Consensus 169 ~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~ 247 (334)
T cd02659 169 DNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLE-LDMEPYTEKGLAKKEGDSEKKDS 247 (334)
T ss_pred CccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCce-ecCccccccccccccccccccCC
Confidence 79999999999999999999999999999998764 6799999999999 999998866431 234
Q ss_pred CceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccc------------------cCCCceEE
Q psy15062 308 SRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA------------------EAEHGAYI 369 (375)
Q Consensus 308 ~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~------------------~~~~~~yl 369 (375)
....|+|+|||+|.|+. .+|||+||+|...+++|++|||+.|+++++++|... ..+++|||
T Consensus 248 ~~~~Y~L~~vI~H~G~~-~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~ 326 (334)
T cd02659 248 ESYIYELHGVLVHSGDA-HGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYM 326 (334)
T ss_pred CCeeEEEEEEEEecCCC-CCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEE
Confidence 56789999999999975 899999999986679999999999999999999521 23578999
Q ss_pred EEEEeC
Q psy15062 370 LVYQRR 375 (375)
Q Consensus 370 l~Y~r~ 375 (375)
|||+|+
T Consensus 327 l~Y~~~ 332 (334)
T cd02659 327 LFYERK 332 (334)
T ss_pred EEEEEe
Confidence 999986
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-56 Score=403.16 Aligned_cols=249 Identities=37% Similarity=0.664 Sum_probs=220.6
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|+||||||||+||+|+++|+||+++++ +|..|+..+....+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~----------------------------------~P~~~~~~l~~~~~~f 46 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE----------------------------------TPKELFSQVCRKAPQF 46 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH----------------------------------CHHHHHHHHHHhhHhh
Confidence 899999999999999999999999999974 6777888887778889
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCC
Q psy15062 87 DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNC 166 (375)
Q Consensus 87 ~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C 166 (375)
..++||||+|||..||+.|+. .+.++|.|++...++|..|
T Consensus 47 ~~~~QqDA~Efl~~lld~l~~----------------------------------------~i~~~F~G~~~~~i~C~~C 86 (279)
T cd02667 47 KGYQQQDSHELLRYLLDGLRT----------------------------------------FIDSIFGGELTSTIMCESC 86 (279)
T ss_pred cCCchhhHHHHHHHHHHHHHH----------------------------------------hhhhhcceEEEEEEEcCCC
Confidence 999999999999999999983 3778999999999999999
Q ss_pred CCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc---
Q psy15062 167 KRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN--- 243 (375)
Q Consensus 167 ~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~--- 243 (375)
+..+...+.|..|+|+++.... ...+|+++|+.|+.+|.+++
T Consensus 87 ~~~s~~~E~f~~L~Lp~~~~~~-----------------------------------~~~sL~~~L~~~~~~E~l~~~~~ 131 (279)
T cd02667 87 GTVSLVYEPFLDLSLPRSDEIK-----------------------------------SECSIESCLKQFTEVEILEGNNK 131 (279)
T ss_pred CCEeCccccceEEecCCCcccC-----------------------------------CCCCHHHHHHhhcCeeEecCCCc
Confidence 9999999999999988764321 11189999999999999986
Q ss_pred -cccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCcccccccCC--CCCCCceeeEEEEE
Q psy15062 244 -TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISASG--RRVESRYTYDLCAV 317 (375)
Q Consensus 244 -~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~--~~~~~~~~Y~L~~v 317 (375)
.|+.|++ +.++..|.++|++|+|+|+||.++. ..|+...|.||.+ |||++|+.... ........|+|+||
T Consensus 132 ~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~~~~~~~~~~~~Y~L~~v 207 (279)
T cd02667 132 FACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEI-LDLAPFCDPKCNSSEDKSSVLYRLYGV 207 (279)
T ss_pred ccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCc-cchhhccCccccccccCCCceEEEEEE
Confidence 8999987 7888899999999999999999885 5899999999998 99999987621 12345679999999
Q ss_pred eeeccCCCCCCeEEEEEEeCC---------------------CCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 318 SNHIGKTALYGHYTAYCRREG---------------------TGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 318 v~H~G~~~~~GHY~a~v~~~~---------------------~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
|+|.|.. ++|||+||+|... +++|++|||+.|++++.++|...+ ||||||+
T Consensus 208 i~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~----aYiLfYe 279 (279)
T cd02667 208 VEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSE----AYLLFYE 279 (279)
T ss_pred EEEeCCC-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCC----cEEEEeC
Confidence 9999998 9999999999743 689999999999999999998876 9999996
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-56 Score=410.22 Aligned_cols=365 Identities=30% Similarity=0.554 Sum_probs=300.3
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCC--CCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHH
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHP--DSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLA 78 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~ 78 (375)
.|.+||.|+||||||||.||||.|++.+|+++++-... ++. .-+..+.++.++++|+.++..++.-.+.|..|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 37899999999999999999999999999999975544 333 33788899999999999999888789999999999
Q ss_pred HhhhccCCCCCCccchHHHHHHHHHHHHHHh-ccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceee
Q psy15062 79 LRSYTKKFDGNQQQDAQEFLLYLLAALNEEA-KVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQL 157 (375)
Q Consensus 79 l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~ 157 (375)
++.++..|.+..|||.+||+.++|+.||+++ +...+++.........+.......+..-|..+.++++++|.++|.|-.
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999999 777778766655555666666678888899999999999999999999
Q ss_pred eceEEecCCCCcceeecCCeeccccCCCCCCC------------------------------------------------
Q psy15062 158 RSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT------------------------------------------------ 189 (375)
Q Consensus 158 ~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~------------------------------------------------ 189 (375)
.+...|+.|+.++...+||..|+||+|....+
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 99999999999999999999999999987644
Q ss_pred -------------------------------c---ce-------------------------------------------
Q psy15062 190 -------------------------------L---YE------------------------------------------- 192 (375)
Q Consensus 190 -------------------------------~---~~------------------------------------------- 192 (375)
. ++
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence 0 00
Q ss_pred ------eeecc--------------------cc-cccCCCCCCcee--------------------------eee-----
Q psy15062 193 ------CQLRS--------------------SV-RCSNCKRTSTVY--------------------------EIF----- 214 (375)
Q Consensus 193 ------~~~~~--------------------~~-~~~~~~~~~~~~--------------------------~~~----- 214 (375)
++.+. .+ .|.+-..++... ++|
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence 00000 00 000000000000 000
Q ss_pred ccc-CCCCCCCCCCHHHHHhhhcccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCccc
Q psy15062 215 WEL-SLPVPPGGGTLYECLNKFFNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIK 287 (375)
Q Consensus 215 ~~~-~~~~~~~~~sl~~~l~~~~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~ 287 (375)
|.. .+.-....++|++||+.|.++|.+.- +|+.|+..-.+.|++.++++|.+|+|||+||.... +.|+..-|.
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 000 00001224699999999999998877 99999999999999999999999999999999776 899999999
Q ss_pred CCCCCCCcccccccCCCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCce
Q psy15062 288 FPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGA 367 (375)
Q Consensus 288 ~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~ 367 (375)
||-..|+|+.+...-. ++...|.|+||=.|+|.. .+|||+||+|++.+++||+|||++|+++.+++..... |
T Consensus 743 yPiddldLs~~~~~~~---~p~liydlyavDNHyggl-sgGHYtAyarn~~n~~wy~fdDsritevdped~vtss----a 814 (823)
T COG5560 743 YPIDDLDLSGVEYMVD---DPRLIYDLYAVDNHYGGL-SGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSS----A 814 (823)
T ss_pred cccccccccceEEeec---CcceEEEeeecccccccc-CCcceeeeeecccCCceEEecCccccccCccccccce----e
Confidence 9998899998765552 344899999999999988 8999999999988899999999999999999876666 9
Q ss_pred EEEEEEeC
Q psy15062 368 YILVYQRR 375 (375)
Q Consensus 368 yll~Y~r~ 375 (375)
|+|||+|+
T Consensus 815 YvLFyrrk 822 (823)
T COG5560 815 YVLFYRRK 822 (823)
T ss_pred EEEEEEec
Confidence 99999996
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-52 Score=352.40 Aligned_cols=325 Identities=27% Similarity=0.462 Sum_probs=256.6
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-----CCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHH
Q psy15062 5 LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-----IHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLAL 79 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-----~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l 79 (375)
++||.|+|||||||++||||+++.++...++..... ..+..+........|..+...+......+|+|..|...+
T Consensus 71 p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i~ 150 (415)
T COG5533 71 PNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDIL 150 (415)
T ss_pred CccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHHH
Confidence 789999999999999999999999999855432221 222335555788888888888888888899999999999
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHHhcc-CCC-CC-C-CCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 80 RSYTKKFDGNQQQDAQEFLLYLLAALNEEAKV-VPD-QY-N-GSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 80 ~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~-~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
+.+.+-|+...|||++||++++||.||+++.. ..+ +- + .++....-.+...+..+...|.-+.....+.+.+.|.|
T Consensus 151 ~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~g 230 (415)
T COG5533 151 SGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFG 230 (415)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhh
Confidence 99999999999999999999999999999922 222 11 1 11222222344455577788888888999999999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
+..++.+|..|++.+.+..+|..|.+|++... ++ .|+++|++|
T Consensus 231 q~~srlqC~~C~~TStT~a~fs~l~vp~~~v~----~~---------------------------------~l~eC~~~f 273 (415)
T COG5533 231 QDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV----QL---------------------------------GLQECIDRF 273 (415)
T ss_pred hhhhhhhhhhcCCceeEEeccceeeeccchhe----ee---------------------------------cHHHHHHHh
Confidence 99999999999999999999999999998754 22 799999999
Q ss_pred cccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCC---CCCcccccccCCCCC
Q psy15062 236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPRE---GLDMEYYISASGRRV 306 (375)
Q Consensus 236 ~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~---~l~l~~~~~~~~~~~ 306 (375)
+..|.+++ +|++|+.+....|++.|..+|++|||+++||.-.. .+|++.+--...+ +..+...+..+ ..
T Consensus 274 ~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~--~~ 351 (415)
T COG5533 274 YEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNG--IG 351 (415)
T ss_pred hhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCC--CC
Confidence 99999988 99999999999999999999999999999997332 4444444332221 02222211111 11
Q ss_pred CCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 307 ESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 307 ~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
-...+|.|.|||||.|.. .+|||+++|+.. +.|+.|||+.|.+++...-.. ..++|||||+|
T Consensus 352 ~~P~~Y~L~gv~Ch~G~L-~gGHY~s~v~~~--~~W~~~dDs~vr~~~~~t~~~---~pSsYilFY~r 413 (415)
T COG5533 352 YIPRKYSLLGVVCHNGTL-NGGHYFSEVKRS--GTWNVYDDSQVRKGSRTTSGS---HPSSYILFYTR 413 (415)
T ss_pred CCccceeEEEEEeeccee-cCceeEEeeeec--CceEEechhheeeccceeccc---CCcceEEEEEe
Confidence 244689999999999988 999999999995 999999999999997655433 23489999998
No 15
>KOG0944|consensus
Probab=100.00 E-value=5.3e-52 Score=383.91 Aligned_cols=298 Identities=28% Similarity=0.494 Sum_probs=256.0
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccC-CCCCCCCCCChhhHHHHHHHHHHHHhcCCC----------ccc
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNE-DIPIHPDSKSQGQLVDALVNFMKMMWSSGN----------LVL 70 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~-~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----------~~v 70 (375)
+|||+||.|+||+||||||||+|+.+|.|-..+... .........+..+|.++|.+|.+.|.++.. ..|
T Consensus 304 gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngI 383 (763)
T KOG0944|consen 304 GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGI 383 (763)
T ss_pred CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCc
Confidence 799999999999999999999999999999888766 222444457888999999999999997653 258
Q ss_pred cHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccc
Q psy15062 71 NTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFS 150 (375)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (375)
+|..|...+++.++.|.+.+||||+|||.+||+.|++..+.. ...++
T Consensus 384 sP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~---------------------------------~~npt 430 (763)
T KOG0944|consen 384 SPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS---------------------------------LPNPT 430 (763)
T ss_pred CHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc---------------------------------CCCHH
Confidence 999999999999999999999999999999999999876432 13588
Q ss_pred cccceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHH
Q psy15062 151 DIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYE 230 (375)
Q Consensus 151 ~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~ 230 (375)
++|.+.++.++.|..|++++++.+....|.++||........+ ++.+
T Consensus 431 d~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v---------------------------------~~~~ 477 (763)
T KOG0944|consen 431 DLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKV---------------------------------PISA 477 (763)
T ss_pred HHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccC---------------------------------CHHH
Confidence 9999999999999999999999999999999998532111111 8999
Q ss_pred HHhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccC------
Q psy15062 231 CLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISAS------ 302 (375)
Q Consensus 231 ~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~------ 302 (375)
+|+.|+.+.+.+..|..|+.+..+.+..+|+++|+||+||+.||.+.. .+|+...+++|++ ||++.|+..+
T Consensus 478 cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~-ldls~~rs~g~~p~ee 556 (763)
T KOG0944|consen 478 CLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEE-LDLSSYRSKGLQPGEE 556 (763)
T ss_pred HHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchh-hchhhhhhcCCCCccc
Confidence 999999995555599999999999999999999999999999999865 8999999999999 9999887655
Q ss_pred --------------------------------------------------------------------------------
Q psy15062 303 -------------------------------------------------------------------------------- 302 (375)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (375)
T Consensus 557 ~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e 636 (763)
T KOG0944|consen 557 ALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDE 636 (763)
T ss_pred ccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCCh
Confidence
Q ss_pred -------------------------------------------------------------CCCCCCceeeEEEEEeeec
Q psy15062 303 -------------------------------------------------------------GRRVESRYTYDLCAVSNHI 321 (375)
Q Consensus 303 -------------------------------------------------------------~~~~~~~~~Y~L~~vv~H~ 321 (375)
+...+...+|+|+|+|.|.
T Consensus 637 ~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHm 716 (763)
T KOG0944|consen 637 ESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHM 716 (763)
T ss_pred hHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecC
Confidence 1123566799999999999
Q ss_pred cCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 322 GKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 322 G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
|+++.+|||||++|+. |+|+.|||++|. .+.++ .++.+||+||+|
T Consensus 717 Gts~~sGHYV~hirKe--gkWVlfNDeKv~-~S~~p-----pK~lgYvY~y~R 761 (763)
T KOG0944|consen 717 GTSAHSGHYVCHIRKE--GKWVLFNDEKVA-ASQEP-----PKDLGYVYLYTR 761 (763)
T ss_pred CCCCCCcceEEEEeec--CcEEEEcchhhh-hccCC-----hhhcceEEEEEe
Confidence 9999999999999995 999999999997 33333 345599999998
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-51 Score=361.74 Aligned_cols=214 Identities=37% Similarity=0.629 Sum_probs=189.8
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986421
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCC
Q psy15062 87 DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNC 166 (375)
Q Consensus 87 ~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C 166 (375)
+||||+|||..||+.|+.. +.++|.|.+...++|..|
T Consensus 33 ---~QqDa~EFl~~ll~~l~~~----------------------------------------i~~~F~g~~~~~i~C~~C 69 (240)
T cd02662 33 ---EQQDAHELFQVLLETLEQL----------------------------------------LKFPFDGLLASRIVCLQC 69 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHHh----------------------------------------ccCccccEEEEEEEeCCC
Confidence 9999999999999999842 678999999999999999
Q ss_pred CCccee-ecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-c
Q psy15062 167 KRTSTV-YEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-T 244 (375)
Q Consensus 167 ~~~~~~-~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~-~ 244 (375)
+..+.. .++|+.|+|++|.... ....+|+++|+.++.+|.+++ .
T Consensus 70 ~~~s~~~~e~f~~LsL~ip~~~~----------------------------------~~~~sl~~~L~~~~~~E~l~~~~ 115 (240)
T cd02662 70 GESSKVRYESFTMLSLPVPNQSS----------------------------------GSGTTLEHCLDDFLSTEIIDDYK 115 (240)
T ss_pred CCccCcceeeeeeeEecccccCC----------------------------------CCCCCHHHHHHHhcCcccccCcC
Confidence 998765 8999999999997631 001189999999999999987 8
Q ss_pred ccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeec
Q psy15062 245 CQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHI 321 (375)
Q Consensus 245 C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~ 321 (375)
|++| +..|.++|++|+|+|+||.++. ..|++..|.||.+ | ....|+|+|||+|.
T Consensus 116 C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~-l--------------~~~~Y~L~avi~H~ 172 (240)
T cd02662 116 CDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPER-L--------------PKVLYRLRAVVVHY 172 (240)
T ss_pred CCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCc-c--------------CCceEEEEEEEEEe
Confidence 9999 5689999999999999998765 6899999999988 6 33689999999999
Q ss_pred cCCCCCCeEEEEEEeC--------------------CCCcEEEecCCceeeeCchhh-ccccCCCceEEEEEE
Q psy15062 322 GKTALYGHYTAYCRRE--------------------GTGRWYLYDDTVVSPVDAQTV-ESAEAEHGAYILVYQ 373 (375)
Q Consensus 322 G~~~~~GHY~a~v~~~--------------------~~~~W~~~nD~~V~~~~~~~v-~~~~~~~~~yll~Y~ 373 (375)
|.. ++|||+||+|.+ ..++|++|||+.|++++.++| ...+ ||||||+
T Consensus 173 G~~-~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~----aY~LfYe 240 (240)
T cd02662 173 GSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKS----AYMLFYE 240 (240)
T ss_pred ccC-CCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCC----EEEEEeC
Confidence 998 999999999986 348999999999999999999 5555 9999996
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-48 Score=340.61 Aligned_cols=224 Identities=48% Similarity=0.848 Sum_probs=198.2
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|+||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999997
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCC
Q psy15062 87 DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNC 166 (375)
Q Consensus 87 ~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C 166 (375)
+||||+||+..||+.|+. .+.++|.+++...++|..|
T Consensus 21 ---~QqDa~Ef~~~ll~~l~~----------------------------------------~i~~~F~~~~~~~~~C~~C 57 (230)
T cd02674 21 ---DQQDAQEFLLFLLDGLHS----------------------------------------IIVDLFQGQLKSRLTCLTC 57 (230)
T ss_pred ---hhhhHHHHHHHHHHHHhh----------------------------------------hHHheeCCEEeCcEEcCCC
Confidence 899999999999999982 3789999999999999999
Q ss_pred CCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc---
Q psy15062 167 KRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN--- 243 (375)
Q Consensus 167 ~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~--- 243 (375)
+..+...+.++.|.|++|...... +..+|+++|+.++..+.+++
T Consensus 58 ~~~~~~~e~~~~l~l~ip~~~~~~---------------------------------~~~sl~~~L~~~~~~e~~~~~~~ 104 (230)
T cd02674 58 GKTSTTFEPFTYLSLPIPSGSGDA---------------------------------PKVTLEDCLRLFTKEETLDGDNA 104 (230)
T ss_pred cCCcceecceeEEEEecccccCCC---------------------------------CCCCHHHHHHHhcCccccCCCCc
Confidence 999999999999999999754211 11289999999999888766
Q ss_pred -cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeee
Q psy15062 244 -TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNH 320 (375)
Q Consensus 244 -~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H 320 (375)
.|++|+..+.+.++..+.++|++|+|+|+||.++. ..|+...|.||.+.+++.+++... ......+|+|+|+|+|
T Consensus 105 ~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~--~~~~~~~Y~L~~vI~H 182 (230)
T cd02674 105 WKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTR--SFTGPFKYDLYAVVNH 182 (230)
T ss_pred eeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccccCcc--cCCCCceEEEEEEEEe
Confidence 89999999999999999999999999999999884 789999999997558998886332 2356679999999999
Q ss_pred ccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 321 IGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 321 ~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
.|.. .+|||+||+|.+.+++|++|||+.|++++.+++.... ||||||+
T Consensus 183 ~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~----~YlL~Y~ 230 (230)
T cd02674 183 YGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSS----AYILFYE 230 (230)
T ss_pred eCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCC----ceEEEeC
Confidence 9998 9999999999965699999999999999999984444 9999996
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.2e-47 Score=342.83 Aligned_cols=258 Identities=39% Similarity=0.690 Sum_probs=208.4
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC----CCCCCCChhhHHHHHHHHHHHHhcC--CCccccHHHHHHH
Q psy15062 5 LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP----IHPDSKSQGQLVDALVNFMKMMWSS--GNLVLNTKAILLA 78 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~----~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~v~~~~~~~~ 78 (375)
|+||.|.||||||||+||+|+++|+||+++.+.... .........++..+|+.+|..|+.. ....+.|..+..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 689999999999999999999999999999975111 1233345568999999999999998 5569999999999
Q ss_pred HhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeee
Q psy15062 79 LRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLR 158 (375)
Q Consensus 79 l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~ 158 (375)
+....+.|..++||||+|||..||+.|+++...... ...+........+++.++|.++..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~f~~~~~ 140 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK--------------------RKSWKNTNSSEDSLISDLFGGQFE 140 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS--------------------HHHHHHHHCCEESHHHHHH-EEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc--------------------cccccccccccccccccccccccc
Confidence 999998899999999999999999999998732211 112244455667888999999999
Q ss_pred ceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccc
Q psy15062 159 SSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238 (375)
Q Consensus 159 ~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~ 238 (375)
..+.|..|+..
T Consensus 141 ~~~~c~~c~~~--------------------------------------------------------------------- 151 (269)
T PF00443_consen 141 SSIKCSSCKNS--------------------------------------------------------------------- 151 (269)
T ss_dssp EEEEETTTTCE---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 99999888744
Q ss_pred ccccccccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCC-CCCCCcccccccCCCCCCCceeeE
Q psy15062 239 ETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFP-REGLDMEYYISASGRRVESRYTYD 313 (375)
Q Consensus 239 e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p-~~~l~l~~~~~~~~~~~~~~~~Y~ 313 (375)
...+.++|++|+|+++||.++. ..|+..+|.+| ++ |+|+.++..+.........|+
T Consensus 152 ------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~-l~l~~~~~~~~~~~~~~~~Y~ 212 (269)
T PF00443_consen 152 ------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEE-LDLSPYLEKNNSECQSNVKYR 212 (269)
T ss_dssp ------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSE-EEGGGGBSSCCCTHTSSSEEE
T ss_pred ------------------ccccccccceeeeccccceeccccccccccccccccCchh-hhhhhhhccccccccccceee
Confidence 3468899999999999995443 68999999999 67 999999988754444578999
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEE
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVY 372 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y 372 (375)
|+|+|+|+| ..++|||+||+|+..+++|++|||+.|+++++++|.... ..+||||||
T Consensus 213 L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~-~~~~yll~Y 269 (269)
T PF00443_consen 213 LVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSS-NSTAYLLFY 269 (269)
T ss_dssp EEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGG-STCEEEEEE
T ss_pred ehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhcc-CCceEEEeC
Confidence 999999999 559999999999975567999999999999999997622 455999999
No 19
>KOG1868|consensus
Probab=100.00 E-value=9e-48 Score=368.16 Aligned_cols=332 Identities=36% Similarity=0.627 Sum_probs=267.9
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CC-CCCCChhhHHHHHHHHHHHHhcC-CCccccHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IH-PDSKSQGQLVDALVNFMKMMWSS-GNLVLNTKAILL 77 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~-~~~~~~~~l~~~l~~l~~~l~~~-~~~~v~~~~~~~ 77 (375)
..|.+||.|+||+||||++||||++++.||..+++.... ++ ........+..++..++..++.. ....+.|..|..
T Consensus 298 ~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~ 377 (653)
T KOG1868|consen 298 VFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIR 377 (653)
T ss_pred ccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHH
Confidence 468999999999999999999999999999666654322 22 12244557777777777777776 445999999999
Q ss_pred HHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCC----CCCCCCcccccchhhhhHHHHhhccCCCcccccc
Q psy15062 78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGS----TYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIF 153 (375)
Q Consensus 78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F 153 (375)
.+....+.|+...|||++||+..+++.||+++.....+.... ...........+..+...|.......++.|.++|
T Consensus 378 ~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf 457 (653)
T KOG1868|consen 378 VLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLF 457 (653)
T ss_pred HHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHH
Confidence 999999999998899999999999999999995544322111 1111222333344455566666556667799999
Q ss_pred ceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHh
Q psy15062 154 VGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLN 233 (375)
Q Consensus 154 ~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~ 233 (375)
.|+..+.++|..|+..+.+.+.|..++|+||........+ +|.+|+.
T Consensus 458 ~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~---------------------------------~L~~C~~ 504 (653)
T KOG1868|consen 458 VGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKV---------------------------------SLEDCLS 504 (653)
T ss_pred HHHHHhheehhhcCCcceeeecceeeEEeccccccccccc---------------------------------chHhhhc
Confidence 9999999999999999999999999999999876532222 7999999
Q ss_pred hhcccccccc----ccccccccccee--EEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCC
Q psy15062 234 KFFNGETLHN----TCQYCKKQSDLV--KLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRR 305 (375)
Q Consensus 234 ~~~~~e~~~~----~C~~C~~~~~~~--~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~ 305 (375)
.|++.|.+++ .|+.|++..... |+..+..+|++|++||+||..+. ..|...-|+||....++.++.....
T Consensus 505 ~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~-- 582 (653)
T KOG1868|consen 505 LFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKG-- 582 (653)
T ss_pred cccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccC--
Confidence 9999999998 899999988885 89999999999999999999884 8889999999986566665443332
Q ss_pred CCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 306 VESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 306 ~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
.....|+|+|||+|.|+. .+|||+|+|+....++|+.|||+.|+.++...+.... ||||||+|
T Consensus 583 -~~~~~Y~L~aVv~H~Gtl-~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~----aYIlFY~~ 645 (653)
T KOG1868|consen 583 -NNPKSYRLYAVVNHSGTL-NSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSS----AYILFYER 645 (653)
T ss_pred -CCccceeeEEEEeccCcc-cCCceEEEEeecCCCceEEecCeeeeccccccccCCC----ceEEEeec
Confidence 344559999999999955 9999999999876789999999999999999987555 99999997
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-47 Score=345.56 Aligned_cols=292 Identities=23% Similarity=0.325 Sum_probs=220.4
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCC------------C-CC------CChhhHHHHHHHHHHHHhcC
Q psy15062 5 LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIH------------P-DS------KSQGQLVDALVNFMKMMWSS 65 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~------------~-~~------~~~~~l~~~l~~l~~~l~~~ 65 (375)
|+||.|+||||||||+||+|+++|+||+++++...... . .. .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999997652100 0 00 12346999999999999998
Q ss_pred CCccccHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccC
Q psy15062 66 GNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTE 145 (375)
Q Consensus 66 ~~~~v~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (375)
....+.|..++..+.. .||||+||+..||+.|+.+++.........+. ......
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~------------------~~~~~~ 134 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDT------------------EDDKEQ 134 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCccc------------------ccccch
Confidence 8889999999887652 99999999999999999998533221100000 001234
Q ss_pred CCccccccceeeeceEEecCCC---CcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCC
Q psy15062 146 ASVFSDIFVGQLRSSVRCSNCK---RTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVP 222 (375)
Q Consensus 146 ~~~i~~~F~~~~~~~~~C~~C~---~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
.++|.++|.|++.+.+.|..|+ ..+...+.|+.|+++|+....- .++.
T Consensus 135 ~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~-----------------------------~~~~ 185 (343)
T cd02666 135 SDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGRE-----------------------------IVVL 185 (343)
T ss_pred hhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCccccc-----------------------------cccc
Confidence 5789999999999999999997 6777899999999999863210 0111
Q ss_pred CCCCCHHHHHhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccc
Q psy15062 223 PGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYIS 300 (375)
Q Consensus 223 ~~~~sl~~~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~ 300 (375)
.+..+|.++|+.|+..|. |.++|++|.|||+ +.+.. ..+...+.++|.. .+..+++.
T Consensus 186 ~~~~~L~d~L~~~~~~e~-------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~-~~~~~~l~ 244 (343)
T cd02666 186 LEPKDLYDALDRYFDYDS-------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSS-IDDIDELI 244 (343)
T ss_pred CCCCCHHHHHHHhcChhh-------------------hccCCHHHHHHHh-hcccccchheeeccccccch-HHHHHHHH
Confidence 122389999999998763 8999999999988 22111 4556666666665 55444432
Q ss_pred cCCC-------------------------CCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCc
Q psy15062 301 ASGR-------------------------RVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDA 355 (375)
Q Consensus 301 ~~~~-------------------------~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~ 355 (375)
.... ...+...|+|+|||+|.|.. ++|||++|+|...++.|++|||..|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~-~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 245 REAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEA-SSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCC-CCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 2100 12367789999999999998 999999999997678999999999999999
Q ss_pred hhhccc--cCCCceEEEEEE
Q psy15062 356 QTVESA--EAEHGAYILVYQ 373 (375)
Q Consensus 356 ~~v~~~--~~~~~~yll~Y~ 373 (375)
++|... ....+||+|+|+
T Consensus 324 ~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCCCCEEEEeC
Confidence 998743 345679999995
No 21
>KOG1866|consensus
Probab=100.00 E-value=1.6e-47 Score=356.70 Aligned_cols=301 Identities=30% Similarity=0.497 Sum_probs=261.1
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-CCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-IHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALR 80 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~ 80 (375)
..|++||+|.|+|||||+++|-|+++|.+|+.+...... ..++-.-+..+++.++.+|..|..+.-..+-|.-|...++
T Consensus 92 p~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr 171 (944)
T KOG1866|consen 92 PEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFR 171 (944)
T ss_pred CcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhh
Confidence 357999999999999999999999999999988765543 1122233334999999999999988888899999999998
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeece
Q psy15062 81 SYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSS 160 (375)
Q Consensus 81 ~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~ 160 (375)
..+...+..+||||.|||+.||+.+.+.+|....+ -++.+.|+|.....
T Consensus 172 ~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-------------------------------~lf~n~f~G~ysdq 220 (944)
T KOG1866|consen 172 LWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-------------------------------QLFSNTFGGSYSDQ 220 (944)
T ss_pred ccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-------------------------------HHHHHHhcCccchh
Confidence 88888889999999999999999999999654332 36788999999999
Q ss_pred EEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccccc
Q psy15062 161 VRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240 (375)
Q Consensus 161 ~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~ 240 (375)
..|.+|.+.-...|.|..|.|.|... +|+++|++|.+.+.
T Consensus 221 KIC~~CpHRY~~eE~F~~l~l~i~~~----------------------------------------nLeesLeqfv~gev 260 (944)
T KOG1866|consen 221 KICQGCPHRYECEESFTTLNLDIRHQ----------------------------------------NLEESLEQFVKGEV 260 (944)
T ss_pred hhhccCCcccCccccceeeeeecccc----------------------------------------hHHHHHHHHHHHHH
Confidence 99999999988899999999999843 89999999999999
Q ss_pred ccc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCC--------
Q psy15062 241 LHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGR-------- 304 (375)
Q Consensus 241 ~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~-------- 304 (375)
++| +|++|..+....++..|++||++|.|||+||.+|. ..|.+.-+.||.+ |||.+|+..+..
T Consensus 261 lEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~-ldMePYtvsg~a~~e~~~~~ 339 (944)
T KOG1866|consen 261 LEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE-LDMEPYTVSGVAKLEGENVE 339 (944)
T ss_pred hcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh-hcCCceeehhhhhhccccCC
Confidence 999 99999999999999999999999999999999996 8999999999999 999999876521
Q ss_pred ------CCCCceeeEEEEEeeeccCCCCCCeEEEEEEeC---CCCcEEEecCCceeeeCchhhcc---------------
Q psy15062 305 ------RVESRYTYDLCAVSNHIGKTALYGHYTAYCRRE---GTGRWYLYDDTVVSPVDAQTVES--------------- 360 (375)
Q Consensus 305 ------~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~---~~~~W~~~nD~~V~~~~~~~v~~--------------- 360 (375)
....+.+|+|+||++|.|.. ++|||++|++.. ..++||+|||..|++++.+++..
T Consensus 340 ~g~~~e~s~~t~~YeLvGVlvHSGqA-saGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~ 418 (944)
T KOG1866|consen 340 SGQQLEQSAGTTKYELVGVLVHSGQA-SAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMS 418 (944)
T ss_pred cCcccccccCcceeEEEEEEEecccc-cCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccc
Confidence 23466799999999999987 999999999652 23699999999999998777651
Q ss_pred -ccCCCceEEEEEEeC
Q psy15062 361 -AEAEHGAYILVYQRR 375 (375)
Q Consensus 361 -~~~~~~~yll~Y~r~ 375 (375)
...|.+||||||+|.
T Consensus 419 ~rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 419 YRRRWWNAYMLFYERM 434 (944)
T ss_pred hHHHhhhhHHHHHHHh
Confidence 136788999999984
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-45 Score=315.53 Aligned_cols=221 Identities=28% Similarity=0.415 Sum_probs=182.7
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999985
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCC
Q psy15062 87 DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNC 166 (375)
Q Consensus 87 ~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C 166 (375)
.||||+||+..||+.|+++++...... .......++|.++|.|+....+.| |
T Consensus 21 ---~QQDa~Ef~~~Lld~Le~~l~~~~~~~-----------------------~~~~~~~~~i~~lF~G~~~~~~~~--~ 72 (228)
T cd02665 21 ---QQQDVSEFTHLLLDWLEDAFQAAAEAI-----------------------SPGEKSKNPMVQLFYGTFLTEGVL--E 72 (228)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccccccc-----------------------cccccccchHhhceEEEEEEEEEE--C
Confidence 799999999999999999985321100 001134568999999999976666 7
Q ss_pred CCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-cc
Q psy15062 167 KRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-TC 245 (375)
Q Consensus 167 ~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~-~C 245 (375)
+..+.+.++|..|+|+|.... +|+++|+.++.++.+++ .|
T Consensus 73 ~~~s~~~E~F~~L~l~i~~~~---------------------------------------~L~e~L~~~~~ee~l~~~~~ 113 (228)
T cd02665 73 GKPFCNCETFGQYPLQVNGYG---------------------------------------NLHECLEAAMFEGEVELLPS 113 (228)
T ss_pred CCcccccCccEEEEEEECCCC---------------------------------------CHHHHHHHhhhhcccccccc
Confidence 777888999999999997653 89999999998888876 33
Q ss_pred cccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeeccC
Q psy15062 246 QYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGK 323 (375)
Q Consensus 246 ~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~G~ 323 (375)
. ......++..|.++|++|+|||+||.++. ..|+...|.||.+ | ....|+|+|||+|.|.
T Consensus 114 ~---~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~-l--------------~~~~Y~L~aVi~H~G~ 175 (228)
T cd02665 114 D---HSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQI-I--------------QQVPYELHAVLVHEGQ 175 (228)
T ss_pred c---chhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCc-c--------------CCceeEEEEEEEecCC
Confidence 2 23345556679999999999999999875 8999999999988 5 2258999999999998
Q ss_pred CCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcc----ccCCCceEEEEEE
Q psy15062 324 TALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVES----AEAEHGAYILVYQ 373 (375)
Q Consensus 324 ~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~----~~~~~~~yll~Y~ 373 (375)
. ++|||+||+|...+++|+.|||+.|++++.++|.. ...+++||||||+
T Consensus 176 ~-~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 176 A-NAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred C-CCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 5 99999999997567999999999999999999973 2346789999995
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-44 Score=316.29 Aligned_cols=243 Identities=27% Similarity=0.415 Sum_probs=185.6
Q ss_pred cccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCCC
Q psy15062 8 IANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFD 87 (375)
Q Consensus 8 L~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~~ 87 (375)
|.|.||+||+||++|+|.+ +++.++.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~----------------------------------------------------i~~~~~~F~ 29 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS----------------------------------------------------IGKINTEFD 29 (245)
T ss_pred ceecCCeeeehhHHHHHHH----------------------------------------------------HhhhhhhcC
Confidence 7899999999999999852 223356699
Q ss_pred CCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCCC
Q psy15062 88 GNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCK 167 (375)
Q Consensus 88 ~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C~ 167 (375)
+++||||+|||..||+.|++++........ ... .......+.++|.+.+.+.++|..|+
T Consensus 30 ~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~F~~~l~s~i~C~~C~ 88 (245)
T cd02673 30 NDDQQDAHEFLLTLLEAIDDIMQVNRTNVP---PSN------------------IEIKRLNPLEAFKYTIESSYVCIGCS 88 (245)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcccCC---CCc------------------ccccccCHhHheeeEEEeEEEecCCC
Confidence 999999999999999999987732111000 000 00011124578999999999999999
Q ss_pred CcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccccccc
Q psy15062 168 RTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQY 247 (375)
Q Consensus 168 ~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~~C~~ 247 (375)
..+...++++.|+|+++.... . .+++++..+...+.++..|++
T Consensus 89 ~~s~~~e~~~~L~L~i~~~~~----~---------------------------------~le~l~~~~~~~~~~e~~C~~ 131 (245)
T cd02673 89 FEENVSDVGNFLDVSMIDNKL----D---------------------------------IDELLISNFKTWSPIEKDCSS 131 (245)
T ss_pred CeeeeccccceeccccccCCc----c---------------------------------hHHHHHHHhhcccccCccCCC
Confidence 999999999999999987421 0 677888888777777669999
Q ss_pred cccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeeccCCCCC
Q psy15062 248 CKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALY 327 (375)
Q Consensus 248 C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~G~~~~~ 327 (375)
|+.. .+.++.+|.++|++|+|+|+||.+.. +....+..+ . +++.++.. ....|+|.|||+|.|.+..+
T Consensus 132 C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~~-~-~~~~~~~~-------~~~~Y~L~~VV~H~G~~~~~ 199 (245)
T cd02673 132 CKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKKN-E-EIMKKYCG-------TDAKYSLVAVICHLGESPYD 199 (245)
T ss_pred CCCc-cceeechhhhCChhhEEeeEeeeecc--ccccccccc-c-cccccccC-------CCceEEEEEEEEECCCCCCC
Confidence 9976 67777889999999999999997554 222222222 2 55655543 23579999999999987799
Q ss_pred CeEEEEEEeCC-CCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 328 GHYTAYCRREG-TGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 328 GHY~a~v~~~~-~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
|||+||+|... +++|+.|||+.|+++++++|... ....||||||+
T Consensus 200 GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~-~~~~aYiLFY~ 245 (245)
T cd02673 200 GHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN-ARSSGYLIFYD 245 (245)
T ss_pred ceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc-cCCceEEEEEC
Confidence 99999999865 58999999999999999999832 12449999996
No 24
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=317.64 Aligned_cols=301 Identities=23% Similarity=0.379 Sum_probs=248.0
Q ss_pred CCC-ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-CCCCCCChhhHHHHHHHHHHHHhcCCCc----cccHHHH
Q psy15062 2 SPG-LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-IHPDSKSQGQLVDALVNFMKMMWSSGNL----VLNTKAI 75 (375)
Q Consensus 2 ~~~-~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~~----~v~~~~~ 75 (375)
+|+ ++||.|+||+||++|+||.|+....+..-+...... ..-...+..+|.|++.+|+..|...... .++|..|
T Consensus 299 ~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~f 378 (749)
T COG5207 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDF 378 (749)
T ss_pred CCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhH
Confidence 456 999999999999999999999987777555433322 1222256779999999999999876643 7999999
Q ss_pred HHHHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 76 LLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 76 ~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
...++.-++.|...+||||+|||.+||+.|.+..+.. ..+.|+++|.+
T Consensus 379 k~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~--------------------------------~~~~It~lf~F 426 (749)
T COG5207 379 KMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY--------------------------------LIPPITSLFEF 426 (749)
T ss_pred HHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchh--------------------------------cCCCcchhhhh
Confidence 9999999999999999999999999999999865322 23568999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
+++.++.|..|+.++++.++..++.+++-... ...++.++++.|
T Consensus 427 e~e~rlsC~~C~~v~ySye~~~~i~i~le~n~------------------------------------E~~di~~~v~a~ 470 (749)
T COG5207 427 EVERRLSCSGCMDVSYSYESMLMICIFLEGND------------------------------------EPQDIRKSVEAF 470 (749)
T ss_pred hhcceecccccccccccccceEEEEeecccCc------------------------------------chhhHHHHHHhe
Confidence 99999999999999999888877776665432 222899999999
Q ss_pred cccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCC-CCcccccccC----------
Q psy15062 236 FNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREG-LDMEYYISAS---------- 302 (375)
Q Consensus 236 ~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~-l~l~~~~~~~---------- 302 (375)
+-+++++..|..|+.+.++.++..++++|++||++..||.... ..|+..++.+.+.+ ++++.|++.-
T Consensus 471 f~pdtiE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPd 550 (749)
T COG5207 471 FLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPD 550 (749)
T ss_pred ECccceeeehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCc
Confidence 9999999999999999999999999999999999999998776 78888888887643 7777777652
Q ss_pred --------------------------------------------------------------------------------
Q psy15062 303 -------------------------------------------------------------------------------- 302 (375)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (375)
T Consensus 551 edE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle 630 (749)
T COG5207 551 EDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLE 630 (749)
T ss_pred cccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHH
Confidence
Q ss_pred ---------------------------C---------------------CCCCCceeeEEEEEeeeccCCCCCCeEEEEE
Q psy15062 303 ---------------------------G---------------------RRVESRYTYDLCAVSNHIGKTALYGHYTAYC 334 (375)
Q Consensus 303 ---------------------------~---------------------~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v 334 (375)
. ..-.....|.|.|||+|.|+++.+||||+|+
T Consensus 631 ~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fI 710 (749)
T COG5207 631 NGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFI 710 (749)
T ss_pred cCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEE
Confidence 0 0002335699999999999999999999999
Q ss_pred EeCCCC--cEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 335 RREGTG--RWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 335 ~~~~~~--~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
|+...| +|+.+||+.+..++.=++.... +||+||+|
T Consensus 711 rk~~~~K~kWvl~nDek~v~~~svE~~k~n----GYiylf~R 748 (749)
T COG5207 711 RKNGKDKWKWVLKNDEKTVLNSSVEVLKDN----GYIYLFKR 748 (749)
T ss_pred ecccCcceeEEEEccchheehhhHHHHhhC----CeEEEEec
Confidence 986554 6899999998888666665555 99999998
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.7e-43 Score=310.03 Aligned_cols=245 Identities=41% Similarity=0.699 Sum_probs=205.0
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCC
Q psy15062 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKF 86 (375)
Q Consensus 7 GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~ 86 (375)
||.|+||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999997
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEecCC
Q psy15062 87 DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNC 166 (375)
Q Consensus 87 ~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~C 166 (375)
.||||+|||..+|+.|+.++...... ........+.+.++|.+.+...+.|..|
T Consensus 21 ---~q~Da~E~l~~ll~~l~~~~~~~~~~-----------------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c 74 (255)
T cd02257 21 ---EQQDAHEFLLFLLDKLHEELKKSSKR-----------------------TSDSSSLKSLIHDLFGGKLESTIVCLEC 74 (255)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhccc-----------------------ccccccCCchhhhhcccEEeeEEECCCC
Confidence 89999999999999999998432110 0111223567999999999999999999
Q ss_pred CCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-cc
Q psy15062 167 KRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-TC 245 (375)
Q Consensus 167 ~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~-~C 245 (375)
+..+.....+..+.+++|.... ...+|.++|+.++..+.+.+ .|
T Consensus 75 ~~~~~~~~~~~~l~l~~~~~~~-----------------------------------~~~~l~~~l~~~~~~e~~~~~~~ 119 (255)
T cd02257 75 GHESVSTEPELFLSLPLPVKGL-----------------------------------PQVSLEDCLEKFFKEEILEGDNC 119 (255)
T ss_pred CCCccCcccceeEEeeccCCCC-----------------------------------CCCcHHHHHHHhhhhhccCCCCc
Confidence 9888777788888888886531 01189999999999988888 89
Q ss_pred cccc--cccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCccccccc---CCCCCCCceeeEEEEE
Q psy15062 246 QYCK--KQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISA---SGRRVESRYTYDLCAV 317 (375)
Q Consensus 246 ~~C~--~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~---~~~~~~~~~~Y~L~~v 317 (375)
..|+ ......++..+.++|++|+|+++||..+. ..|+...|.+|.+ +++..++.. ..........|+|+||
T Consensus 120 ~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~Y~L~~v 198 (255)
T cd02257 120 YKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLE-LDLSPYLSEGEKDSDSDNGSYKYELVAV 198 (255)
T ss_pred ccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCc-ccCccccccccccccccCCCccEEEEEE
Confidence 9998 67888888999999999999999998764 7899999999999 999888753 2233456789999999
Q ss_pred eeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcc-ccCCCceEEEEEE
Q psy15062 318 SNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVES-AEAEHGAYILVYQ 373 (375)
Q Consensus 318 v~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~-~~~~~~~yll~Y~ 373 (375)
|+|.|..+.+|||+||+|.+.+++|++|||..|++++.+++.. ...+.+||+|||+
T Consensus 199 i~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 199 VVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred EEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999998899999999999655999999999999999999853 1234669999996
No 26
>KOG1867|consensus
Probab=100.00 E-value=1.4e-42 Score=327.01 Aligned_cols=315 Identities=32% Similarity=0.524 Sum_probs=260.8
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCC-CccccHHHHHHHHhh
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG-NLVLNTKAILLALRS 81 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~v~~~~~~~~l~~ 81 (375)
.++.||.|+|+||+||++||.|.+.+..++..+...+...+.+....++.+++.+++..++++. ...+.|..++..+.+
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 4789999999999999999999999999988887665534444447899999999999999999 789999999999999
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
..+.+.+.+||||+||+..+++.++.+.+.. ... ..... ....-.+++...|.|.+...+
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~-~k~---~~~~~----------------~~~~c~~iv~~~F~G~L~~~v 298 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREKDDC-GKS---LIASQ----------------SNKQCPCIVHTIFSGTLQSDV 298 (492)
T ss_pred hCcccccccccchHHHHHHhccccccccccc-ccc---ccccc----------------CCcccccccceeecceeccce
Confidence 9999999999999999999999999876000 000 00000 001346789999999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
.|..|+..+...++|+.|+|.||..-.....- .. ..++.+++..+...+..
T Consensus 299 ~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~--------------~~---------------~~~~~~cl~~~~~~~~~ 349 (492)
T KOG1867|consen 299 TCQTCGSKSTTYDPFMDISLDIPDQFTSSSVR--------------SP---------------ELTLLDCLDRFTRSEQL 349 (492)
T ss_pred eehhhcceeeeccCccceeeecchhccCcccc--------------cc---------------hhhhhhhhhhhhhhhhc
Confidence 99999999977999999999998653210000 00 01688888877766654
Q ss_pred cc----cccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCcccccccCCC--CCCCceee
Q psy15062 242 HN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISASGR--RVESRYTY 312 (375)
Q Consensus 242 ~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~~--~~~~~~~Y 312 (375)
.. .|..|+......+...+..+|.+|.++++||.+.. ..|+...|.||.. |++.+|+..+.. .+.....|
T Consensus 350 ~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~-l~m~p~~~~~~~~~~~~~~~~Y 428 (492)
T KOG1867|consen 350 GKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVL-LNMKPYCSSEKLKSQDNPDHLY 428 (492)
T ss_pred CcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchh-hcCCccccccccccCCCCCceE
Confidence 43 89999999999999999999999999999998775 4499999999999 999999886322 22457899
Q ss_pred EEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 313 DLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 313 ~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
+|.|||+|+|. .++|||+||.|+. +.|++|||+.|..++.++|.+.. ||+|||.+
T Consensus 429 ~L~AVV~H~G~-~~SGHY~aY~r~~--~~~~~~dDs~v~~~s~~eVl~~~----aylLFY~~ 483 (492)
T KOG1867|consen 429 ELRAVVVHHGT-VGSGHYVAYRRQS--GGWFKCDDSTVTKVSEEEVLSSQ----AYLLFYTQ 483 (492)
T ss_pred EEEEEEEeccC-CCCCceEEEEEeC--CCcEEEcCeEEEEeeHHHhhhch----hhheehhH
Confidence 99999999999 5999999999995 99999999999999999999888 99999976
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-43 Score=327.44 Aligned_cols=296 Identities=29% Similarity=0.454 Sum_probs=247.8
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
.+||+||+|.|.||||||+||.|+.+..||+.+...... .......+.-+|+++|..|+..+ .++++.+|....+-
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd---~p~grdSValaLQr~Fynlq~~~-~PvdTteltrsfgW 265 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD---HPRGRDSVALALQRLFYNLQTGE-EPVDTTELTRSFGW 265 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC---CCCccchHHHHHHHHHHHHhccC-CCcchHHhhhhcCc
Confidence 489999999999999999999999999999999876532 11223347789999999999765 78899888877652
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
..+....|||.+||=..|.+.|+...+.. .....+..+|-|+..+.+
T Consensus 266 --ds~dsf~QHDiqEfnrVl~DnLEksmrgt-------------------------------~VEnaln~ifVgkmksyi 312 (1089)
T COG5077 266 --DSDDSFMQHDIQEFNRVLQDNLEKSMRGT-------------------------------VVENALNGIFVGKMKSYI 312 (1089)
T ss_pred --ccchHHHHHhHHHHHHHHHHHHHHhhcCC-------------------------------hhhhHHhHHHHHHhhcee
Confidence 23556789999999999999999865322 123457889999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
.|-.=...+.+.+.||.+.+.+.... +|++.+++|...|++
T Consensus 313 kCvnvnyEsarvedfwdiqlNvK~~k---------------------------------------nLqeSfr~yIqvE~l 353 (1089)
T COG5077 313 KCVNVNYESARVEDFWDIQLNVKGMK---------------------------------------NLQESFRRYIQVETL 353 (1089)
T ss_pred eEEEechhhhhHHHHHHHHhcccchh---------------------------------------hHHHHHHHhhhheec
Confidence 99888888888999999999987654 899999999999999
Q ss_pred cc-cccccccc--cceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCC-CCceeeE
Q psy15062 242 HN-TCQYCKKQ--SDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRV-ESRYTYD 313 (375)
Q Consensus 242 ~~-~C~~C~~~--~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~-~~~~~Y~ 313 (375)
+| -|=.|..+ +.+.|-.-|.++|++|.++|+||.+|. ..|++...+||.+ +|+.+|++...+.+ ...+.|.
T Consensus 354 ~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~e-iDl~pfld~da~ksen~d~vY~ 432 (1089)
T COG5077 354 DGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLE-IDLLPFLDRDADKSENSDAVYV 432 (1089)
T ss_pred cCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcch-hccccccCchhhhhcccCcEEE
Confidence 99 44444433 567778889999999999999999886 8999999999999 99999998875432 3458999
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcccc------------------CCCceEEEEEEeC
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAE------------------AEHGAYILVYQRR 375 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~------------------~~~~~yll~Y~r~ 375 (375)
|+||++|.|+. ..|||+|++|...+|+|++|||++|+.+...+|+..+ ..-+||||+|-||
T Consensus 433 LygVlVHsGDl-~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRk 511 (1089)
T COG5077 433 LYGVLVHSGDL-HEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRK 511 (1089)
T ss_pred EEEEEEecccc-CCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehH
Confidence 99999999998 9999999999777899999999999999998887210 1234799999986
No 28
>KOG1870|consensus
Probab=100.00 E-value=4.9e-41 Score=338.45 Aligned_cols=360 Identities=33% Similarity=0.610 Sum_probs=294.3
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC----CCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP----IHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILL 77 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~----~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~ 77 (375)
.+|.+||.|+|||||||+.+|+|.+.+.+++++...... .....+..+.+...+..+..++|......+.|..++.
T Consensus 243 ~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~ 322 (842)
T KOG1870|consen 243 ERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRT 322 (842)
T ss_pred cccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhh
Confidence 479999999999999999999999999999999865443 2223367788999999999999998877899999999
Q ss_pred HHhhhccCCCCCCccchHHHHHHHHHHHHHHh-ccCCCCC-CCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEA-KVVPDQY-NGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
.+....+.|.+..|+|.+||+.++++.||+.+ +....++ ...+.+..++.+ .+...|..+..+..+.+.++|.+
T Consensus 323 ~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~----~~~~~~~~~~~~~~s~i~d~~~~ 398 (842)
T KOG1870|consen 323 SLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQE----VAAEVWDYHLKRNRSVIVDLFDG 398 (842)
T ss_pred hhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhh----hhHHHHHhhhhhccceeeeeecc
Confidence 99999999999999999999999999999999 5555555 666666665555 77888999999999999999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCC----------------------------------------------
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT---------------------------------------------- 189 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~---------------------------------------------- 189 (375)
...+...|..|+..+...++|..|++++|.....
T Consensus 399 ~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 478 (842)
T KOG1870|consen 399 TYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWEL 478 (842)
T ss_pred eecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhc
Confidence 9999999999999999999999999999966644
Q ss_pred ----------------------------------cc------e---e-------eec-----------------cccccc
Q psy15062 190 ----------------------------------LY------E---C-------QLR-----------------SSVRCS 202 (375)
Q Consensus 190 ----------------------------------~~------~---~-------~~~-----------------~~~~~~ 202 (375)
.. . + +.. ....+.
T Consensus 479 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~ 558 (842)
T KOG1870|consen 479 KPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVL 558 (842)
T ss_pred ccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeecc
Confidence 00 0 0 000 000000
Q ss_pred C-CC---------------C---C--------------------------------------------------------
Q psy15062 203 N-CK---------------R---T-------------------------------------------------------- 207 (375)
Q Consensus 203 ~-~~---------------~---~-------------------------------------------------------- 207 (375)
+ +. + .
T Consensus 559 ~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (842)
T KOG1870|consen 559 SGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFF 638 (842)
T ss_pred CCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccc
Confidence 0 00 0 0
Q ss_pred ----------------Cceeeeecc-------------cCCC----------CCCCCCCHHHHHhhhcccccccc----c
Q psy15062 208 ----------------STVYEIFWE-------------LSLP----------VPPGGGTLYECLNKFFNGETLHN----T 244 (375)
Q Consensus 208 ----------------~~~~~~~~~-------------~~~~----------~~~~~~sl~~~l~~~~~~e~~~~----~ 244 (375)
+......|. -+.+ -.+...+|+++|+.|+..|.+.. +
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~ 718 (842)
T KOG1870|consen 639 QSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWY 718 (842)
T ss_pred ccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCcccccc
Confidence 000000000 0000 01114689999999999999986 9
Q ss_pred ccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeecc
Q psy15062 245 CQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIG 322 (375)
Q Consensus 245 C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~G 322 (375)
|++|+....+.|+..++++|++|||||+||.+.. ..|+...|+||...||+++|+..... ..|+|.|++.|+|
T Consensus 719 C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~-----~~Y~l~av~nHyG 793 (842)
T KOG1870|consen 719 CPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ-----VLYDLYAVGNHYG 793 (842)
T ss_pred ChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc-----ceeeeeeeecccC
Confidence 9999999999999999999999999999999887 89999999999988999999888742 8999999999999
Q ss_pred CCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 323 KTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 323 ~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
.. .+|||+||.|...+++|+.|||+.|.+++++++.... ||+|||+|+
T Consensus 794 ~l-~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~----aY~Lfy~r~ 841 (842)
T KOG1870|consen 794 QL-SGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEA----AYVLFYRRL 841 (842)
T ss_pred Cc-CCcchhhhhhcCCCCceEEeccccCCCCChhhccccc----ceEEEEEec
Confidence 95 9999999999977899999999999999999998887 999999996
No 29
>KOG1873|consensus
Probab=100.00 E-value=3.3e-40 Score=308.72 Aligned_cols=361 Identities=32% Similarity=0.504 Sum_probs=247.8
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-----CCC-----------CCCChhhHHHHHHHHHHHHhcCC
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-----IHP-----------DSKSQGQLVDALVNFMKMMWSSG 66 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-----~~~-----------~~~~~~~l~~~l~~l~~~l~~~~ 66 (375)
.-..||.|+|||||+|||||.|.++|.+|+.+...... +.+ ...+..++..+|.. +..|..+.
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ 281 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETT 281 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhcc
Confidence 34689999999999999999999999999999865433 111 11455567777777 45555566
Q ss_pred CccccHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHHh-ccCCCC----CCCCCCCCCCcccccchhhhhHHHHh
Q psy15062 67 NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEA-KVVPDQ----YNGSTYSNTSSKQVGSFRALHYWEKF 141 (375)
Q Consensus 67 ~~~v~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (375)
..++.|..|...+....++|.++.|||+||+|..||+.|..|. +..... ...+..+-.+... .....+....+
T Consensus 282 ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle--~~q~sKvYe~f 359 (877)
T KOG1873|consen 282 KSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLE--CGQKSKVYEPF 359 (877)
T ss_pred CCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhh--ccchhhccccc
Confidence 6799999999999999999999999999999999999998876 211111 1111000000000 00000111111
Q ss_pred hccCCCccccccceeeeceEEecCCCCcceeecCCeeccccCCCCCCC--------------------------------
Q psy15062 142 QTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT-------------------------------- 189 (375)
Q Consensus 142 ~~~~~~~i~~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~-------------------------------- 189 (375)
+....++...|.+.+.+.+.|..|. ++...+.|...+++|......
T Consensus 360 -~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~ 437 (877)
T KOG1873|consen 360 -KDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPS 437 (877)
T ss_pred -ccCCcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccc
Confidence 1122345578899999999999998 666678888888877655422
Q ss_pred -------------------------------------------------------------------c-----------c
Q psy15062 190 -------------------------------------------------------------------L-----------Y 191 (375)
Q Consensus 190 -------------------------------------------------------------------~-----------~ 191 (375)
. .
T Consensus 438 ~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~ld 517 (877)
T KOG1873|consen 438 SELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLD 517 (877)
T ss_pred ccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccc
Confidence 0 0
Q ss_pred eeeecc----------------ccccc----CCCC---------------------------------CCc---------
Q psy15062 192 ECQLRS----------------SVRCS----NCKR---------------------------------TST--------- 209 (375)
Q Consensus 192 ~~~~~~----------------~~~~~----~~~~---------------------------------~~~--------- 209 (375)
.....+ .+.+- .|.. .++
T Consensus 518 e~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs 597 (877)
T KOG1873|consen 518 EANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVS 597 (877)
T ss_pred cccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeec
Confidence 000000 00000 0000 000
Q ss_pred ----------eeee---ecc-------------------------cCCCC--------------------------CCCC
Q psy15062 210 ----------VYEI---FWE-------------------------LSLPV--------------------------PPGG 225 (375)
Q Consensus 210 ----------~~~~---~~~-------------------------~~~~~--------------------------~~~~ 225 (375)
..+. |.. +++-+ ..+.
T Consensus 598 ~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p 677 (877)
T KOG1873|consen 598 GNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEP 677 (877)
T ss_pred cccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCC
Confidence 0000 000 00001 2225
Q ss_pred CCHHHHHhhhcccccccc----cccccccc---------------------------cceeEEEEeccCCceEEEEEccc
Q psy15062 226 GTLYECLNKFFNGETLHN----TCQYCKKQ---------------------------SDLVKLYEIQRLPPVLILWFKRF 274 (375)
Q Consensus 226 ~sl~~~l~~~~~~e~~~~----~C~~C~~~---------------------------~~~~~~~~~~~~P~~L~i~l~R~ 274 (375)
.+++.||.+|+..|.+.+ .|+.|.+. +.+.+...|..+|+||+||++||
T Consensus 678 ~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf 757 (877)
T KOG1873|consen 678 CSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRF 757 (877)
T ss_pred ccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhh
Confidence 689999999999999988 89999430 11355667889999999999999
Q ss_pred cccc---cccccCcccCCCCCCCcccccccCCC--CCCCceeeEEEEEeeeccCCCCCCeEEEEEEeC------------
Q psy15062 275 SSNF---TQKVTSPIKFPREGLDMEYYISASGR--RVESRYTYDLCAVSNHIGKTALYGHYTAYCRRE------------ 337 (375)
Q Consensus 275 ~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~~--~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~------------ 337 (375)
..+. ..|.+.++.|++. +++.+|+...-. ....+..|+|.|+|.|.|+. +.||||+|++..
T Consensus 758 ~q~~~~~~~k~~~h~~f~E~-~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm-~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 758 FQDIRGRLSKLNKHVDFKEF-EDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTM-SYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhhchhhcccccchHHHH-HHHHHHhhhhccccCCcchhhhhhccceeccccc-cCCcchhhhhccchhhccCccccc
Confidence 8664 7899999999998 999988866522 22366799999999999988 999999999863
Q ss_pred --------CCCcEEEecCCceeeeCchhhccccCCCceEEEEEEe
Q psy15062 338 --------GTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374 (375)
Q Consensus 338 --------~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r 374 (375)
..++||+..|+.|.++++++|+..+ ||||||+|
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkse----AYlLFYER 876 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREVSLDEVLKSE----AYLLFYER 876 (877)
T ss_pred cchhccCCCCcceEEecchheecccHHHHhhhh----hhhhheec
Confidence 3579999999999999999999988 99999998
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-39 Score=285.42 Aligned_cols=239 Identities=25% Similarity=0.397 Sum_probs=189.4
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
.++++||.|.|.+||+||+||+|+.+|+||+.+.. +........++.++|..||. .+.
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~----~~~~~~~~~~l~~el~~lfs-------------~~i----- 69 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI----ILVACPKESCLLCELGYLFS-------------TLI----- 69 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHh----hcccCCcCccHHHHHHHHHH-------------HHH-----
Confidence 36799999999999999999999999999997322 23344677899999999991 111
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
.-|-.+|++.+..+.+. .+
T Consensus 70 -------------q~F~~fll~~i~~~~~~----------------------------------------~~-------- 88 (268)
T cd02672 70 -------------QNFTRFLLETISQDQLG----------------------------------------TP-------- 88 (268)
T ss_pred -------------HHHHHHHHHHHHHHhcc----------------------------------------cC--------
Confidence 22345667777755310 00
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
..|+..+...+++..|+|++|.... ....++.++|+.++..|..
T Consensus 89 --~~C~~~s~~~~~~~~LsLpip~~~~----------------------------------~~~~sl~~cL~~~~~~E~~ 132 (268)
T cd02672 89 --FSCGTSRNSVSLLYTLSLPLGSTKT----------------------------------SKESTFLQLLKRSLDLEKV 132 (268)
T ss_pred --CCCCceeeccccceeeeeecCcccc----------------------------------ccCCCHHHHHHHHhhhhhc
Confidence 6799999999999999999986320 0112899999999998877
Q ss_pred cc-cccccccccceeEEEEeccCCc----eEEEEEccccccc---------cccccCcccCCCCCCCcccccccCCCCCC
Q psy15062 242 HN-TCQYCKKQSDLVKLYEIQRLPP----VLILWFKRFSSNF---------TQKVTSPIKFPREGLDMEYYISASGRRVE 307 (375)
Q Consensus 242 ~~-~C~~C~~~~~~~~~~~~~~~P~----~L~i~l~R~~~~~---------~~k~~~~v~~p~~~l~l~~~~~~~~~~~~ 307 (375)
.. .|++|+....+.++.+|+++|+ +|+|+++||.... ..++...|.+|.. +++......+ ..
T Consensus 133 ~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~~~~~---~~ 208 (268)
T cd02672 133 TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAI-DHDKLVKNRG---QE 208 (268)
T ss_pred ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeeccccc-ccchhhhccC---CC
Confidence 66 9999999999999999999999 9999999998643 3467778888877 6555443332 23
Q ss_pred CceeeEEEEEeeeccCCCCCCeEEEEEEeCC----CCcEEEecCCceeeeCchhhccccCCCceEEEEEE
Q psy15062 308 SRYTYDLCAVSNHIGKTALYGHYTAYCRREG----TGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373 (375)
Q Consensus 308 ~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~----~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~ 373 (375)
...+|+|+|||+|.|....+|||+||+|... +++|++|||..|++++. . ||||||+
T Consensus 209 ~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~----aYiLfY~ 268 (268)
T cd02672 209 SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------L----AYILLYQ 268 (268)
T ss_pred CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------h----heeeecC
Confidence 5579999999999998668999999999853 57899999999999988 3 9999995
No 31
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.6e-36 Score=275.42 Aligned_cols=285 Identities=25% Similarity=0.374 Sum_probs=236.0
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHh-cCCCccccHHHHHHHHhhhcc
Q psy15062 6 NGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMW-SSGNLVLNTKAILLALRSYTK 84 (375)
Q Consensus 6 ~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~v~~~~~~~~l~~~~~ 84 (375)
+||.|.+++||+||+||+|+.+|++|+.++.+. ......++.++|+.||++|. .+...++.+..|.++++....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~ 75 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPE 75 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHH
Confidence 599999999999999999999999999999876 23577899999999999999 888889999999999998876
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEEec
Q psy15062 85 KFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCS 164 (375)
Q Consensus 85 ~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~ 164 (375)
.-+.+.|+|..+|+.+|++.|+.++.......... ...........+.++|+.......+|.
T Consensus 76 a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~i~~~f~~~~~~~~~c~ 137 (295)
T PF13423_consen 76 AAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT------------------SENSSSSPESSISQLFGTSFETTIRCT 137 (295)
T ss_pred HHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccc------------------cccccCCCcchHHHHhCcceeeeeccc
Confidence 67788899999999999999999984332211000 000012234579999999999999999
Q ss_pred CCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccc-
Q psy15062 165 NCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN- 243 (375)
Q Consensus 165 ~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~- 243 (375)
.|+..+...+....+.+..|... ...++.+.|+.++..+....
T Consensus 138 ~c~~~~~~~~~~~~~~l~yp~~~------------------------------------~~~tf~~~Le~sl~~e~~~~a 181 (295)
T PF13423_consen 138 SCGHESVKESSTLVLDLPYPPSN------------------------------------SNVTFSQVLEHSLNREQQTRA 181 (295)
T ss_pred ccCCeEEeecceeeeeccCCCCC------------------------------------ccchHHHHHHHHHhhcccccc
Confidence 99999877777777766666522 12289999999998888777
Q ss_pred cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCC----CCCCceeeEEEEE
Q psy15062 244 TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGR----RVESRYTYDLCAV 317 (375)
Q Consensus 244 ~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~----~~~~~~~Y~L~~v 317 (375)
.|++|++......+..+.++|++|.|.++|...+. ..|....+.+|.. +++..++..... ......+|+|.|+
T Consensus 182 ~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~-i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~ 260 (295)
T PF13423_consen 182 WCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPS-INLPHFIADDSQSDLEGESGIFKYELRSM 260 (295)
T ss_pred cccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceeccee-eeccccccccccccccCCCCceEEEEEEE
Confidence 99999999888888899999999999999988774 6788899999998 988888755421 3467789999999
Q ss_pred eeeccCCCCCCeEEEEEEeCC--CCcEEEecCCce
Q psy15062 318 SNHIGKTALYGHYTAYCRREG--TGRWYLYDDTVV 350 (375)
Q Consensus 318 v~H~G~~~~~GHY~a~v~~~~--~~~W~~~nD~~V 350 (375)
|+|.|++..+|||||+||.+. +++||+|||..|
T Consensus 261 V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 261 VCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999889999999999853 379999999765
No 32
>KOG1863|consensus
Probab=100.00 E-value=6.9e-38 Score=323.12 Aligned_cols=298 Identities=30% Similarity=0.444 Sum_probs=256.1
Q ss_pred CCc-cccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 3 PGL-NGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 3 ~~~-~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
+|+ +||.|.||||||||+||+|+.++.||+.+.+.... ....++...+..+|+.||..|+....+.|++..+..++..
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~-~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~ 245 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPF-TGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGW 245 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCC-CCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhc
Confidence 676 99999999999999999999999999999987742 2333455669999999999999999889999999999986
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
.. ...+.|||++||...|++.|+..+.... ....+.++|.|...+.+
T Consensus 246 ~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~-------------------------------~~~~l~~lf~g~~~~~i 292 (1093)
T KOG1863|consen 246 DS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK-------------------------------VENTLQDLFTGKMKSVI 292 (1093)
T ss_pred cc--ccHHhhhhHHHHHHHHHHHHHhhccchh-------------------------------hhhhhhhhhcCCcceEE
Confidence 54 4467999999999999999998874321 24468899999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
.|..|...+...+.|+.+.+++.... ++.+.|+.|+..|.+
T Consensus 293 ~c~~~~~~s~r~e~f~d~ql~~~g~~---------------------------------------nl~~sf~~y~~~E~l 333 (1093)
T KOG1863|consen 293 KCIDVDFESSRSESFLDLQLNGKGVK---------------------------------------NLEDSLHLYFEAEIL 333 (1093)
T ss_pred EEEeeeeeccccccccCccccccchh---------------------------------------hHHHHHHHhhhHHHh
Confidence 99999999989999999999987654 899999999999999
Q ss_pred cc---cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCccccccc-CCCCCCCceeeE
Q psy15062 242 HN---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISA-SGRRVESRYTYD 313 (375)
Q Consensus 242 ~~---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~-~~~~~~~~~~Y~ 313 (375)
.+ +|..|.....+.+...+.++|++|.|+|.||.++. ..|++..+.||.. |++..++.. ........+.|.
T Consensus 334 ~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~-i~~d~~~~~~~~~~~~~~~~y~ 412 (1093)
T KOG1863|consen 334 LGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLI-IDMDRYLSRFKAEESERSAVYS 412 (1093)
T ss_pred cCCccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccc-cccchhccccchhhhhccceec
Confidence 88 79999999999999999999999999999999874 8999999999999 999999885 322233446999
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccc------------cCCCceEEEEEEeC
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA------------EAEHGAYILVYQRR 375 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~------------~~~~~~yll~Y~r~ 375 (375)
|.||.+|.|.. .+|||++|++.+..++|+.|||..|..++..++... .....||+++|.|+
T Consensus 413 l~~v~vh~g~~-~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 413 LHAVLVHSGDA-HSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred cchhhcccccc-cCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEec
Confidence 99999997766 999999999977779999999999999997777622 01122799999885
No 33
>KOG4598|consensus
Probab=100.00 E-value=1.4e-38 Score=295.01 Aligned_cols=277 Identities=26% Similarity=0.444 Sum_probs=232.7
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
+.||+||.|-.-+||+|+.+|+|+..|.|++.+.... ...+....+.+.++.
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~----------------------------~~~~et~dlt~sfgw 135 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE----------------------------NDSLETKDLTQSFGW 135 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC----------------------------cccccchhhHhhcCC
Confidence 4689999999999999999999999999999987332 124555556555542
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
-. -...+|||.+|+....++.|+-..+. +....+|.+++.|+....+
T Consensus 136 ~s--~ea~~qhdiqelcr~mfdalehk~k~-------------------------------t~~~~li~~ly~g~m~d~v 182 (1203)
T KOG4598|consen 136 TS--NEAYDQHDVQELCRLMFDALEHKWKG-------------------------------TEHEKLIQDLYRGTMEDFV 182 (1203)
T ss_pred Cc--chhhhhhhHHHHHHHHHHHHHhhhcC-------------------------------chHHHHHHHHhcchHHHHH
Confidence 21 22468999999999999999876642 3345689999999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
.|..|+..+...+.|..|+|++.+-+..-.-. +++++|..|..+|.+
T Consensus 183 ~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~---------------------------------sieeal~afvqpe~l 229 (1203)
T KOG4598|consen 183 ACLKCGRESVKTDYFLDLPLAVKPFGAIHAYK---------------------------------SVEEALTAFVQPELL 229 (1203)
T ss_pred HHHHcCccccccceeecccccccCCcchhhhh---------------------------------hHHHHHHHhcChhhc
Confidence 99999999999999999999887654321111 899999999999999
Q ss_pred cc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCC---------
Q psy15062 242 HN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGR--------- 304 (375)
Q Consensus 242 ~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~--------- 304 (375)
++ .|++|+++..+.+-..|+++|=+|.|||+||.++. +.|++..+.||.. |+|..|+.....
T Consensus 230 dg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~-l~ln~~in~~~~s~~~~~~~~ 308 (1203)
T KOG4598|consen 230 DGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDV-LDLNDYVNKEKRSTTSSAWQQ 308 (1203)
T ss_pred CCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCccc-ccHHHhhhhccCCcchhHhhh
Confidence 99 89999999999999999999999999999999886 8999999999999 999999866500
Q ss_pred ------------------------------------------------------CCCCceeeEEEEEeeeccCCCCCCeE
Q psy15062 305 ------------------------------------------------------RVESRYTYDLCAVSNHIGKTALYGHY 330 (375)
Q Consensus 305 ------------------------------------------------------~~~~~~~Y~L~~vv~H~G~~~~~GHY 330 (375)
...+...|+|++|++|.|+. .+|||
T Consensus 309 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a-~gghy 387 (1203)
T KOG4598|consen 309 IGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNA-AGGHY 387 (1203)
T ss_pred cccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCC-CCcee
Confidence 11355789999999999987 99999
Q ss_pred EEEEEeCCCCcEEEecCCceeeeCchhhccc---------cCCCceEEEEEEe
Q psy15062 331 TAYCRREGTGRWYLYDDTVVSPVDAQTVESA---------EAEHGAYILVYQR 374 (375)
Q Consensus 331 ~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~---------~~~~~~yll~Y~r 374 (375)
+||+++..+++||+|||++|+.+.+.+++.. +.+..||||+|+|
T Consensus 388 ~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~ 440 (1203)
T KOG4598|consen 388 FAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRR 440 (1203)
T ss_pred eeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhh
Confidence 9999998889999999999999999999832 2346699999986
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-34 Score=250.91 Aligned_cols=127 Identities=27% Similarity=0.551 Sum_probs=102.6
Q ss_pred CHHHHHhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCC-
Q psy15062 227 TLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASG- 303 (375)
Q Consensus 227 sl~~~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~- 303 (375)
+|+++|+.|+..|. |.++|++|+|||+||.++. ..|+...|.||.+ |+|.+|+....
T Consensus 81 tLedcLe~~~~~e~-------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~-Ldl~~~~~~~~~ 140 (241)
T cd02670 81 TLEQCLEQYFNNSV-------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDE-IDIPDFVADDPR 140 (241)
T ss_pred CHHHHHHHHhchhh-------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCc-CCchhhcccccc
Confidence 99999999998763 8899999999999999876 6899999999998 99999986542
Q ss_pred ------------------CCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCC-----------CCcEEEecCCceeeeC
Q psy15062 304 ------------------RRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREG-----------TGRWYLYDDTVVSPVD 354 (375)
Q Consensus 304 ------------------~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~-----------~~~W~~~nD~~V~~~~ 354 (375)
........|+|.|||+|.|.+..+|||+||+|... ++.|++|||..|..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~ 220 (241)
T cd02670 141 ACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGV 220 (241)
T ss_pred cccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccccc
Confidence 11234578999999999998779999999999964 3799999999887765
Q ss_pred chhhc--cccCCCceEEEEEE
Q psy15062 355 AQTVE--SAEAEHGAYILVYQ 373 (375)
Q Consensus 355 ~~~v~--~~~~~~~~yll~Y~ 373 (375)
..... ......+||||||+
T Consensus 221 ~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 221 SNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccchhcccCCceEEEeC
Confidence 33211 01123449999996
No 35
>KOG1872|consensus
Probab=100.00 E-value=1.6e-34 Score=259.97 Aligned_cols=300 Identities=23% Similarity=0.318 Sum_probs=230.9
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCC--CChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhh
Q psy15062 5 LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDS--KSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSY 82 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~ 82 (375)
++||.|+|||||||+.+|+|..+|+++..+....-...... .....+..+++.+|+.|... ..+.|..+.+++.+.
T Consensus 105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~ 182 (473)
T KOG1872|consen 105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQ 182 (473)
T ss_pred CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHH
Confidence 67999999999999999999999999988875442211111 22456788899999999988 799999999999998
Q ss_pred ccCCCC------CCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCcccccccee
Q psy15062 83 TKKFDG------NQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQ 156 (375)
Q Consensus 83 ~~~~~~------~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~ 156 (375)
.|.|.- ..||||.|++..++..++..++...... .....+...|+..
T Consensus 183 ~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~---------------------------~~~~~~d~~f~~~ 235 (473)
T KOG1872|consen 183 YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP---------------------------CLEAEAAAGFGAE 235 (473)
T ss_pred hHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc---------------------------chhHHHHHhhccc
Confidence 888765 6799999999999999998774332111 2334577788888
Q ss_pred eeceEEecCCCCccee--ecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhh
Q psy15062 157 LRSSVRCSNCKRTSTV--YEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNK 234 (375)
Q Consensus 157 ~~~~~~C~~C~~~~~~--~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~ 234 (375)
+.....|..-...... .+.|..|.+.+...-. .+...|+.
T Consensus 236 ~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~--------------------------------------~~k~Gl~~ 277 (473)
T KOG1872|consen 236 FSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVH--------------------------------------DMRFGLKS 277 (473)
T ss_pred cccceeeccCcccccccccccccccceEEeeeec--------------------------------------hhhhhhhh
Confidence 8889999776666554 5666666666654322 33333433
Q ss_pred hcccccccccccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCC-------
Q psy15062 235 FFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASG------- 303 (375)
Q Consensus 235 ~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~------- 303 (375)
=+. |.++...+.-+......+.+.|.++|.||.|+..||.+.. ..|+-+.|.||.. ||..+++...-
T Consensus 278 ~~~-e~~~K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~-ld~~d~ct~el~~k~~~~ 355 (473)
T KOG1872|consen 278 GLS-EEIQKISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKD-LDQQDLCTPELKKKLLCR 355 (473)
T ss_pred hhh-hhhhccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhh-hhHHHhhCHHhhcCccch
Confidence 322 2222244445556667778889999999999999999886 7788889999999 99999987760
Q ss_pred ---------------------------------------C-CCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEE
Q psy15062 304 ---------------------------------------R-RVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWY 343 (375)
Q Consensus 304 ---------------------------------------~-~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~ 343 (375)
. .......|.|.|||.|.|.+..+|||+||+|. ++++|+
T Consensus 356 r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~-s~~~w~ 434 (473)
T KOG1872|consen 356 RKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRV-SEDKWG 434 (473)
T ss_pred HHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEec-cCCcee
Confidence 0 11226789999999999999999999999999 578999
Q ss_pred EecCCceeeeCchhhcc---ccCCCceEEEEEEe
Q psy15062 344 LYDDTVVSPVDAQTVES---AEAEHGAYILVYQR 374 (375)
Q Consensus 344 ~~nD~~V~~~~~~~v~~---~~~~~~~yll~Y~r 374 (375)
+|||..|+.+..+.+.+ +..|++||+|+|+=
T Consensus 435 ~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~ 468 (473)
T KOG1872|consen 435 HFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKA 468 (473)
T ss_pred eccccccccccccceeeecCCCccchhhheeecc
Confidence 99999999999888873 45689999999973
No 36
>KOG1864|consensus
Probab=100.00 E-value=2.5e-33 Score=268.36 Aligned_cols=327 Identities=26% Similarity=0.396 Sum_probs=250.4
Q ss_pred CccccccCCchhhHH--HHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCc--cccHHHHHHHH
Q psy15062 4 GLNGIANAGNTCYIN--SVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNL--VLNTKAILLAL 79 (375)
Q Consensus 4 ~~~GL~N~gntCy~N--svLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~--~v~~~~~~~~l 79 (375)
..-|..|.+++|+.| ++.+.++.+-.+++..................+...+.+++...-..... .+.|..++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 467888999999999 99999999999996665433211121123445666666666654443333 79999999999
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHHh-ccCCCCCCCCCCCCCCcccccchhhhhHHH--HhhccCCCcccccccee
Q psy15062 80 RSYTKKFDGNQQQDAQEFLLYLLAALNEEA-KVVPDQYNGSTYSNTSSKQVGSFRALHYWE--KFQTTEASVFSDIFVGQ 156 (375)
Q Consensus 80 ~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~F~~~ 156 (375)
.+....|..+.||||+||+.++++.+++-+ +............. ........+..++. ........++..+|.|+
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~--~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~ 388 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKE--SDGNSSTSAASWTNKGHHKSLRENWVSKLFQGI 388 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccC--CCCccccccccccccccccccchhHHHHhhcCe
Confidence 999999999999999999999999999877 22211111111000 00000001111111 22344567899999999
Q ss_pred eeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhc
Q psy15062 157 LRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFF 236 (375)
Q Consensus 157 ~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~ 236 (375)
+....+|..|+..+...+.|.+++++++.... . ++..+|+.|.
T Consensus 389 l~~et~Clsc~t~T~~de~f~D~~~~v~~de~----~---------------------------------si~~~l~~~~ 431 (587)
T KOG1864|consen 389 LTNETRCLSCETITSRDEGFLDLSVAVEIDEN----T---------------------------------SITNLLKSFS 431 (587)
T ss_pred eeeeeeeccccccccccccccccceecccccc----c---------------------------------cHHHHHHHhc
Confidence 99999999999999999999999999986421 1 8999999999
Q ss_pred ccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCC
Q psy15062 237 NGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVES 308 (375)
Q Consensus 237 ~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~ 308 (375)
..|.+.+ +|++|.....+.+++.++.+|.+|+|+|+||.++. ..|+...+.+|.+ +.+...+.... ..
T Consensus 432 ~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~ple-l~l~~~~~~~~---~~ 507 (587)
T KOG1864|consen 432 STETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLE-LRLKDTLKDDN---NP 507 (587)
T ss_pred chhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccc-eeecccccccc---Cc
Confidence 9999988 89999999999999999999999999999999885 7899999999988 77766655542 22
Q ss_pred ceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 309 RYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 309 ~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
...|.|+|||+|.|.+++.|||+||+|.. .-.|+.|||..|..++.++|.... ..++|+++|.++
T Consensus 508 ~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nWl~fdD~~V~~~s~~~v~~~~-~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 508 DRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNWLLFDDDNVEPISEEPVSEFT-GSSGDTLFYYVQ 572 (587)
T ss_pred cceeeEEEEEEeccCCCCCcceEEEEeeC-CCCceecccccccccCcchhhhcc-CCCccceeeeEE
Confidence 47999999999999999999999999995 334999999999999999997543 344788887653
No 37
>KOG1871|consensus
Probab=100.00 E-value=1.3e-32 Score=241.29 Aligned_cols=333 Identities=25% Similarity=0.338 Sum_probs=239.4
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCC----------------
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGN---------------- 67 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---------------- 67 (375)
.|.|+.|.||-|||||+||+|+.|++|.+.+...............+++.++..+.....+-..
T Consensus 27 ~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~ 106 (420)
T KOG1871|consen 27 DPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVV 106 (420)
T ss_pred CCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccccc
Confidence 5899999999999999999999999999988754422222225666788887777665552111
Q ss_pred ------------ccccHHHHHHHHhhhc--cCCCCCCccchHHHHHHHHHHHHHHhccCC----CCCCCCCC----C---
Q psy15062 68 ------------LVLNTKAILLALRSYT--KKFDGNQQQDAQEFLLYLLAALNEEAKVVP----DQYNGSTY----S--- 122 (375)
Q Consensus 68 ------------~~v~~~~~~~~l~~~~--~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~----~~~~~~~~----~--- 122 (375)
..+-|..+...+.... .....|+|+||.||+..+|+.||+|.-..+ .+...... .
T Consensus 107 ~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n 186 (420)
T KOG1871|consen 107 EKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGN 186 (420)
T ss_pred chhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccc
Confidence 0122222222222111 122358999999999999999999982111 11111000 0
Q ss_pred --CCCcccccchhhhhHHHHhh-----------ccCCCccccccceeeeceEEecCCCCcceeecCCeeccccCCCCCCC
Q psy15062 123 --NTSSKQVGSFRALHYWEKFQ-----------TTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT 189 (375)
Q Consensus 123 --~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~ 189 (375)
+.............+|.... ....++|+++|+|.+.+...-.+ .+.+...+||..+.++|......
T Consensus 187 ~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~ 265 (420)
T KOG1871|consen 187 LCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIH 265 (420)
T ss_pred cccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccC
Confidence 01111111112222222211 22357899999999999887665 44457789999999999776543
Q ss_pred cceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccccccccccccceeEEEEeccCCceEEE
Q psy15062 190 LYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLIL 269 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i 269 (375)
++++++..+...|.+.++..+-+....+.+.+.+..+|++|++
T Consensus 266 -------------------------------------sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlil 308 (420)
T KOG1871|consen 266 -------------------------------------SVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLIL 308 (420)
T ss_pred -------------------------------------CHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhh
Confidence 8999999999999888865555666778888899999999999
Q ss_pred EEccccccc---cccccCcccCCCCCCCcccccccCCCC---CCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEE
Q psy15062 270 WFKRFSSNF---TQKVTSPIKFPREGLDMEYYISASGRR---VESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWY 343 (375)
Q Consensus 270 ~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~~~~~---~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~ 343 (375)
|++||.+.. ..|+.+.+++|-+ +.+..-+-...-. ..-...|+|.++|.|+|.+++.|||..-+.+-..+.|+
T Consensus 309 hlkrF~ye~tgg~~k~~K~i~~~~~-l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~ 387 (420)
T KOG1871|consen 309 HLKRFVYEKTGGARKLGKKIEYPWT-LKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQ 387 (420)
T ss_pred hhhHHHHHhccchhhhchhhhccce-eeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCcee
Confidence 999998763 8999999999998 8877554322211 23456899999999999999999999999987678999
Q ss_pred EecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 344 LYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 344 ~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
.+||..|..+..++|+..+...+||+|+|+|.
T Consensus 388 rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 388 RIDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred EeccceeeeccHhhhccccCccchheeEeeec
Confidence 99999999999999998888888999999973
No 38
>KOG2026|consensus
Probab=100.00 E-value=2.7e-32 Score=238.26 Aligned_cols=301 Identities=24% Similarity=0.352 Sum_probs=239.7
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCc--cccHHHHHHHHh
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNL--VLNTKAILLALR 80 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~--~v~~~~~~~~l~ 80 (375)
+|.+||.|+.++-|+|++||+|.+.+++|++++.... -.+....++..|..+.+++|++... .++|.++.+++.
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n----~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN----YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc----ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 7999999999999999999999999999999987531 2256679999999999999998876 899999999998
Q ss_pred hhc-cCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeec
Q psy15062 81 SYT-KKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRS 159 (375)
Q Consensus 81 ~~~-~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~ 159 (375)
... ..|..++|-|+.||++++|+.||..++... ...++|++.|+|.++.
T Consensus 208 ~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k------------------------------~~~SIi~~~fqG~~ri 257 (442)
T KOG2026|consen 208 KLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK------------------------------KASSIIHKSFQGEVRI 257 (442)
T ss_pred HHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC------------------------------CchhHhhHhhcceEEe
Confidence 765 478999999999999999999999985442 2347899999999886
Q ss_pred eEEecC----CCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 160 SVRCSN----CKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 160 ~~~C~~----C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
..+-.. -.......-+|+.|.|++|+.+......+ ..-+|+- .|.++|++|
T Consensus 258 ~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e---------------------~niiPQV----~l~~lL~Kf 312 (442)
T KOG2026|consen 258 VKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVME---------------------KNIIPQV----ALFDLLKKF 312 (442)
T ss_pred eeeccccccccccceEEEEeeEEEEecCCCCCcccchhh---------------------hcccccc----hHHHHHHHh
Confidence 655433 33334557889999999999887633221 1112221 799999998
Q ss_pred cccccccccccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCceeeE
Q psy15062 236 FNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYD 313 (375)
Q Consensus 236 ~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~ 313 (375)
.+....+- .....+ ++..+.++|+||||+++||..+. ..|+.+.++||-..+++.+++.........-..|.
T Consensus 313 ~g~t~~e~-----~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (442)
T KOG2026|consen 313 DGETVTEV-----VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYS 386 (442)
T ss_pred cCceeeee-----cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCcccccc
Confidence 76543221 111112 67889999999999999999887 89999999999444777766544332223447899
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
|.|-+.|.- .-|||...+++++.++||..+|-.|++..++.+...+ +||-+|+|+
T Consensus 387 ~~~N~i~~~---e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~E----s~iQiwe~~ 441 (442)
T KOG2026|consen 387 LVANAIHED---EDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKE----SFIQIWEKQ 441 (442)
T ss_pred chhhhhcCc---ccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHH----HHHHHHhcc
Confidence 999999985 4599999999998999999999999999999999888 899888875
No 39
>KOG1275|consensus
Probab=99.87 E-value=1.6e-21 Score=187.01 Aligned_cols=325 Identities=18% Similarity=0.180 Sum_probs=216.1
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhh
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSY 82 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~ 82 (375)
+-|.||.-.+-+-|.||+||+|+.+|++|..++.+.+ ....|+.|+|..||.+|..+.........|..+++..
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C------~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~ 570 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC------TKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTN 570 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc------chhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhC
Confidence 4588999999999999999999999999999998754 5778999999999999999999999999999999876
Q ss_pred ccCCCCCC---ccchHHHHHH--HHHHHHHHhccCCCCCCCCCCCCCCcccc--cchhh-hhHHHHhhccCCCccccccc
Q psy15062 83 TKKFDGNQ---QQDAQEFLLY--LLAALNEEAKVVPDQYNGSTYSNTSSKQV--GSFRA-LHYWEKFQTTEASVFSDIFV 154 (375)
Q Consensus 83 ~~~~~~~~---QqDa~E~l~~--ll~~L~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~i~~~F~ 154 (375)
...-+.|. +.++.+.+.. +++..+... ..+. ....+.+. +...+ ........-.....+.+.|+
T Consensus 571 ~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~--~set------~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~ 642 (1118)
T KOG1275|consen 571 PEASALGLVLSDTQISGTVNDDVLIQDAEGFI--SSET------SRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFC 642 (1118)
T ss_pred hHhhhhcccccchhhccccchHHHhhhhhhcc--chhh------hhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhh
Confidence 54333221 1112232221 111111000 0000 00000000 00000 00000011223457889999
Q ss_pred eeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhh
Q psy15062 155 GQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNK 234 (375)
Q Consensus 155 ~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~ 234 (375)
.+.+...+|-.|+..+.....-..+.+..|....- ........+.+.|++
T Consensus 643 ~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~i------------------------------d~~~~~~~F~~iL~R 692 (1118)
T KOG1275|consen 643 QEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLI------------------------------DTLAKSNNFVEILKR 692 (1118)
T ss_pred hHHHHhhhcccccchhhhhhhhhheeecCCCccch------------------------------hhcccccchHHHhhh
Confidence 99999999999999876654545555555543210 000001146666665
Q ss_pred hccccc-ccccccccccccceeEEEEeccCCceEEEEEccccccc------cccccCcccCCCCCCCcccccccC-----
Q psy15062 235 FFNGET-LHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF------TQKVTSPIKFPREGLDMEYYISAS----- 302 (375)
Q Consensus 235 ~~~~e~-~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~------~~k~~~~v~~p~~~l~l~~~~~~~----- 302 (375)
...... +..-|+.|.+......+..++.+|.+|.|...-+.... ..|....|-+|++ +.+...-...
T Consensus 693 ~l~l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~-~~~~~~k~~~~~v~~ 771 (1118)
T KOG1275|consen 693 SLSLFKNKQAWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEW-FHMIISKNKAQLVST 771 (1118)
T ss_pred hhhcccccccccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchh-eeEEEecccceeeee
Confidence 544333 22389999999888888889999999999887665443 3345667777776 5554321111
Q ss_pred ----------CCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeC--------CCCcEEEecCCceeeeCchhhc-cccC
Q psy15062 303 ----------GRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRRE--------GTGRWYLYDDTVVSPVDAQTVE-SAEA 363 (375)
Q Consensus 303 ----------~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~--------~~~~W~~~nD~~V~~~~~~~v~-~~~~ 363 (375)
+.+.....+|+|.|+|+|.|+..+.+|+|++++.. .+.+||+|||..|++++++|.. -..+
T Consensus 772 ~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~ 851 (1118)
T KOG1275|consen 772 ISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGP 851 (1118)
T ss_pred eccccCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccC
Confidence 11234558999999999999988899999999752 3468999999999999888776 4568
Q ss_pred CCceEEEEE
Q psy15062 364 EHGAYILVY 372 (375)
Q Consensus 364 ~~~~yll~Y 372 (375)
|+.|.||+|
T Consensus 852 WKvP~Il~Y 860 (1118)
T KOG1275|consen 852 WKVPAILYY 860 (1118)
T ss_pred ccCcEEEEE
Confidence 999999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=99.26 E-value=8.6e-11 Score=99.07 Aligned_cols=141 Identities=16% Similarity=0.316 Sum_probs=90.8
Q ss_pred HHhhccCCCccccccceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccC
Q psy15062 139 EKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELS 218 (375)
Q Consensus 139 ~~~~~~~~~~i~~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
-..--+.+..+.++|.-.......|..||.....+-.-...
T Consensus 113 lPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~--------------------------------------- 153 (275)
T PF15499_consen 113 LPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLV--------------------------------------- 153 (275)
T ss_pred hHHHHhcchHHHhHhheeeEEEEEccccCChhhhhheeeec---------------------------------------
Confidence 33344556778999999999999999999985432111111
Q ss_pred CCCCCCCCCHHHHHhhhccccccc-ccccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCccc
Q psy15062 219 LPVPPGGGTLYECLNKFFNGETLH-NTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEY 297 (375)
Q Consensus 219 ~~~~~~~~sl~~~l~~~~~~e~~~-~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~ 297 (375)
++...+..|-...-.. +.|.+|+.+. ..+++.+.++|+++++|+. .+-..+.-....|-
T Consensus 154 --------TFtnv~pdwhPLnA~h~~pCn~C~~ks-Q~rkMvlekv~~vfmLHFV---eGLP~ndl~~ysF~-------- 213 (275)
T PF15499_consen 154 --------TFTNVIPDWHPLNAVHFGPCNSCNSKS-QRRKMVLEKVPPVFMLHFV---EGLPHNDLQHYSFH-------- 213 (275)
T ss_pred --------ccCCCCCCCCcccccccCCCcccCChH-HhHhhhhhcCchhhhhhhh---ccCCccCCCcccee--------
Confidence 1111111111111111 1799998665 5567889999999999943 33322222222221
Q ss_pred ccccCCCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCcee
Q psy15062 298 YISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVS 351 (375)
Q Consensus 298 ~~~~~~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~ 351 (375)
-....|++.+||.+.-. -.|+++|+++ .+|.|..|||-+=-
T Consensus 214 ---------feg~~Y~Vt~VIQY~~~---~~HFvtWi~~-~dGsWLecDDLkgp 254 (275)
T PF15499_consen 214 ---------FEGCLYQVTSVIQYQAN---LNHFVTWIRD-SDGSWLECDDLKGP 254 (275)
T ss_pred ---------ecCeeEEEEEEEEEecc---CceeEEEEEc-CCCCeEeeccCCCc
Confidence 13368999999999874 4899999999 58999999997643
No 41
>KOG1887|consensus
Probab=98.02 E-value=1.3e-06 Score=85.41 Aligned_cols=232 Identities=18% Similarity=0.269 Sum_probs=130.9
Q ss_pred CCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHh-hccCCCccccccceeeeceEEecCCC
Q psy15062 89 NQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKF-QTTEASVFSDIFVGQLRSSVRCSNCK 167 (375)
Q Consensus 89 ~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~F~~~~~~~~~C~~C~ 167 (375)
....++.++|..++..|++.......-. +. ..+-...|... .....++.+++|+........|.+|.
T Consensus 547 ~~~~~~S~lL~~ll~~l~~~~~~ss~~~---------~v---~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr 614 (806)
T KOG1887|consen 547 KHEGVYSELLSDLLLSLEEVHNASSSAA---------DV---VVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCR 614 (806)
T ss_pred HhhhhHHHHHHHHHhhhHHHhhhcchhh---------HH---HHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccc
Confidence 4566889999999999988763221000 00 00011111111 12234678889999999999999998
Q ss_pred CcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccccccccc
Q psy15062 168 RTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQY 247 (375)
Q Consensus 168 ~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~~~C~~ 247 (375)
....-.+... +.+.+....... +-...+.+++.+.|+..-..... .|+.
T Consensus 615 ~~~n~peqsS-~~~~~~a~slr~----------------------------~k~a~~n~~f~~ilk~i~m~~~m--~cD~ 663 (806)
T KOG1887|consen 615 RDLNYPEQSS-YGIVIAADSLRQ----------------------------LKCAFQNITFEDILKNIRMNDKM--LCDK 663 (806)
T ss_pred cCCCCcchhh-hhhhccchhhhh----------------------------HHHHhhhhhHHHHHHHhhhhhhh--cccc
Confidence 7754432221 111122111100 00011112556666552211111 4544
Q ss_pred ----cccccceeEEEEeccCCceEEEEEccccccc-cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeecc
Q psy15062 248 ----CKKQSDLVKLYEIQRLPPVLILWFKRFSSNF-TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIG 322 (375)
Q Consensus 248 ----C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~-~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~G 322 (375)
|+...... .-|.+.|++.+|.+.+-.... ..--.+...+..+ +|++.....+ .....+|+|+++|..+.
T Consensus 664 ~~gGCgk~n~v~--h~is~~P~vftIvlewEk~ETe~eI~~T~~aL~te-idis~~y~~g---~ep~t~yrLVSmv~~~e 737 (806)
T KOG1887|consen 664 ETGGCGKANLVH--HILSPCPPVFTIVLEWEKSETEKEISETTKALATE-IDISRLYREG---LEPNTKYRLVSMVGNHE 737 (806)
T ss_pred cCCCCcchhhhh--hhcCCCCCeeEeeeehhcccchHHHHHHHHHHHhh-hhHHHHhhhc---cCcCceeEEEEEeeecc
Confidence 65443332 347889999999777643332 1222233334455 8888766422 25667999999999875
Q ss_pred CCCCCCeEEEEEEeCCCCcEE--EecCCceeee-Cchhhccc--cCCCceEEEEEEe
Q psy15062 323 KTALYGHYTAYCRREGTGRWY--LYDDTVVSPV-DAQTVESA--EAEHGAYILVYQR 374 (375)
Q Consensus 323 ~~~~~GHY~a~v~~~~~~~W~--~~nD~~V~~~-~~~~v~~~--~~~~~~yll~Y~r 374 (375)
. .++|.|+.+.+ ++|+ +.+|..+..+ +|.+|.+- ...-.+-+|||+.
T Consensus 738 ~---~~~~~C~Aye~--Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 738 E---GEEYICFAYEP--NRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEA 789 (806)
T ss_pred c---cceEEEeeccC--CcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHH
Confidence 3 49999999997 7777 9999998887 67777631 1111144666654
No 42
>KOG3556|consensus
Probab=97.94 E-value=4e-06 Score=77.59 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=52.7
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHH-----HHhcCCCc-cccHHHHHH
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMK-----MMWSSGNL-VLNTKAILL 77 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~-----~l~~~~~~-~v~~~~~~~ 77 (375)
.+.|++-.-|+||+||.|-+++.-..+...++-...+ ..+..-..+++.+++ .|+...-. .-...+++.
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~-----p~d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~ 441 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPP-----PSDSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRV 441 (724)
T ss_pred ccccccCCcchhhccccccccccccccccccccCCCC-----cccccccHHHHHHHHHhhhchhhhcceeecCHHHHHHH
Confidence 3568888889999999999888665555444432221 222233333333332 12111111 111234555
Q ss_pred HHhhhccCC-CCCCccchHHHHHHHHHHHH
Q psy15062 78 ALRSYTKKF-DGNQQQDAQEFLLYLLAALN 106 (375)
Q Consensus 78 ~l~~~~~~~-~~~~QqDa~E~l~~ll~~L~ 106 (375)
.+.++.-.. .+-+..|++|||+.++..+-
T Consensus 442 ~ldql~~~sG~tceekdpEEFLn~l~t~i~ 471 (724)
T KOG3556|consen 442 ELDQLNFRSGDTCEEKDPEEFLNGLKTLIA 471 (724)
T ss_pred HHHhhhccccCcccccCHHHHHHHHHHHhc
Confidence 555443211 13457799999988876554
No 43
>KOG1864|consensus
Probab=97.43 E-value=0.0003 Score=68.91 Aligned_cols=106 Identities=28% Similarity=0.400 Sum_probs=61.6
Q ss_pred cccCCchhhHHHHHHHHhCCHHHHHHHccCCCCC------CCCC-CChh------hHHHHHHHHHHHHhcC-CCccccHH
Q psy15062 8 IANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI------HPDS-KSQG------QLVDALVNFMKMMWSS-GNLVLNTK 73 (375)
Q Consensus 8 L~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~------~~~~-~~~~------~l~~~l~~l~~~l~~~-~~~~v~~~ 73 (375)
|.|.||+||.||+||+|..+|+|+..+....... ..+. .... ....+....+...-.. +....+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 8999999999999999999999997776422210 0000 0111 1111111122211000 01133344
Q ss_pred HHHHHHhhh---ccCCCCCCccchHHHHHHHHHHHHHHhccCC
Q psy15062 74 AILLALRSY---TKKFDGNQQQDAQEFLLYLLAALNEEAKVVP 113 (375)
Q Consensus 74 ~~~~~l~~~---~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~ 113 (375)
.+.+.+... ...|....|+||++++..++-.+....+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~~ 156 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGVSE 156 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcccCc
Confidence 444444332 3457888999999999998888877764433
No 44
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.67 E-value=0.011 Score=53.53 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=43.1
Q ss_pred CccccccCCchhhHHHHHHHHhCCHH-HHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhh
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPA-FRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSY 82 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~-~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~ 82 (375)
|++=|.=.-|+||+||++=.|=++.. |+. + .+..++.++..++ |..|...+-..
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------~---~l~~aw~~f~~G~-----~~~fVa~~Ya~ 155 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------P---GLDEAWNEFKAGD-----PAPFVAWCYAS 155 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS-----------------H---HHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------H---HHHHHHHHHhCCC-----hHHHHHHHHHH
Confidence 44445556799999999876654432 221 1 2334444444444 77888777664
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHH
Q psy15062 83 TKKFDGNQQQDAQEFLLYLLAALNE 107 (375)
Q Consensus 83 ~~~~~~~~QqDa~E~l~~ll~~L~~ 107 (375)
.. ...|+.-||+++|..|++.+..
T Consensus 156 ~~-~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 156 TN-AKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp TT---TTS---HHHHHHHHHTTB-T
T ss_pred cC-CCCCCCcCHHHHHHHHHHhccc
Confidence 33 5578999999999999876653
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=95.38 E-value=0.0087 Score=48.55 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCCcEEEecCCceeeeCchh
Q psy15062 327 YGHYTAYCRREGTGRWYLYDDTVVSPVDAQT 357 (375)
Q Consensus 327 ~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~ 357 (375)
.||.+.+.+.. +.||.+||+.+.+..++.
T Consensus 138 ~~Havfa~~ts--~gWy~iDDe~~y~~tPdp 166 (193)
T PF05408_consen 138 QEHAVFACVTS--DGWYAIDDEDFYPWTPDP 166 (193)
T ss_dssp TTEEEEEEEET--TCEEEEETTEEEE----G
T ss_pred CcceEEEEEee--CcEEEecCCeeeeCCCCh
Confidence 59999999884 999999999998875443
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=83.63 E-value=3.4 Score=33.93 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=15.9
Q ss_pred CccccccCCchhhHHHHHHHHh
Q psy15062 4 GLNGIANAGNTCYINSVLQCLS 25 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~ 25 (375)
.++|+.|.+|+||+||++|.+.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~ 53 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFR 53 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHH
Confidence 3679999999999999999875
No 47
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=77.06 E-value=4.5 Score=39.56 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=42.8
Q ss_pred ceEEEEEccccccc-----------cccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeeec-cCCC-------
Q psy15062 265 PVLILWFKRFSSNF-----------TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHI-GKTA------- 325 (375)
Q Consensus 265 ~~L~i~l~R~~~~~-----------~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H~-G~~~------- 325 (375)
.+|++.++|-.... ..-...++++..+ +.+ ....|+|.+.|||. |+..
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~-i~i------------ngimyrL~SAVCYK~~d~~~d~C~~~ 545 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQE-ITI------------NGIMYRLKSAVCYKIGDQFFDGCNGN 545 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccc-eee------------cceeeeeehhheeeccccccCCCCCC
Confidence 78999999864321 3444555555554 444 34689999999994 4322
Q ss_pred ---CCCeEEEEEEeCCCCcEEEecC-Cceee
Q psy15062 326 ---LYGHYTAYCRREGTGRWYLYDD-TVVSP 352 (375)
Q Consensus 326 ---~~GHY~a~v~~~~~~~W~~~nD-~~V~~ 352 (375)
-.|||+. ++.. .-||++|- +.++.
T Consensus 546 diflkG~ytI-lfTe--~Gpw~YDP~s~~s~ 573 (666)
T PF03292_consen 546 DIFLKGYYTI-LFTE--MGPWMYDPLSIFSK 573 (666)
T ss_pred cceeceeEEE-EEec--CCceeeCchhhcCc
Confidence 1378874 4452 44555554 44443
No 48
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=63.88 E-value=13 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=22.5
Q ss_pred EEEEeeeccCCCCCC-eEEEEEEeCCCCcEEEecCC
Q psy15062 314 LCAVSNHIGKTALYG-HYTAYCRREGTGRWYLYDDT 348 (375)
Q Consensus 314 L~~vv~H~G~~~~~G-HY~a~v~~~~~~~W~~~nD~ 348 (375)
+...|+-.|...++| ||.|+..+|...+-|+||--
T Consensus 19 ~acAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDPf 54 (183)
T PF00770_consen 19 PACAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDPF 54 (183)
T ss_dssp -EEEEEESS-TTT--S-EEEEEEETTTTEEEEE-TT
T ss_pred cceEEEecCCcccCceeEEEEEecCCcceEEEeCCC
Confidence 555566666554555 99999999988899999854
No 49
>KOG2906|consensus
Probab=61.36 E-value=18 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=14.2
Q ss_pred cccccccccceeEEEEeccC
Q psy15062 244 TCQYCKKQSDLVKLYEIQRL 263 (375)
Q Consensus 244 ~C~~C~~~~~~~~~~~~~~~ 263 (375)
.|++|++.......+++.++
T Consensus 67 ~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 67 TCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred cCCCCCCCceEEEEeeeccC
Confidence 89999987766666555443
No 50
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=54.65 E-value=29 Score=19.06 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHh
Q psy15062 54 ALVNFMKMMWSSGNLVLNTKAILLALR 80 (375)
Q Consensus 54 ~l~~l~~~l~~~~~~~v~~~~~~~~l~ 80 (375)
.|..+|+.+.......|+..+|...|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367889999888888999999999987
No 51
>PF14353 CpXC: CpXC protein
Probab=53.39 E-value=15 Score=28.59 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=11.2
Q ss_pred ccccccccccccccccce
Q psy15062 237 NGETLHNTCQYCKKQSDL 254 (375)
Q Consensus 237 ~~e~~~~~C~~C~~~~~~ 254 (375)
..+.....|+.||.....
T Consensus 33 ~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCcCEEECCCCCCceec
Confidence 333333389999976543
No 52
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=49.69 E-value=24 Score=17.06 Aligned_cols=14 Identities=29% Similarity=1.070 Sum_probs=10.7
Q ss_pred EEEeCCCCcEEEecCC
Q psy15062 333 YCRREGTGRWYLYDDT 348 (375)
Q Consensus 333 ~v~~~~~~~W~~~nD~ 348 (375)
+++. ++.|+.|++.
T Consensus 3 W~~~--~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD--NGNWYYFDSD 16 (19)
T ss_dssp EEEE--TTEEEEETTT
T ss_pred CEEE--CCEEEEeCCC
Confidence 5666 4899999875
No 53
>KOG1867|consensus
Probab=47.18 E-value=5.5 Score=38.85 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=53.3
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHh----cCCCc-cccHHHHHHH
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMW----SSGNL-VLNTKAILLA 78 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~----~~~~~-~v~~~~~~~~ 78 (375)
-..|+.+.+|+|++|+.++.++.++.|.-.............. ..++...+..+...++ ..... ...+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~ 153 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYK-EQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRLV 153 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhh-ccchhhccchhhhhhhhhhccchhcccCCcc-cccc
Confidence 3578899999999999999999999776433221111000000 1122222222111111 11110 11111 1122
Q ss_pred HhhhccCCCCCCccchHHHHHHHHHHHH
Q psy15062 79 LRSYTKKFDGNQQQDAQEFLLYLLAALN 106 (375)
Q Consensus 79 l~~~~~~~~~~~QqDa~E~l~~ll~~L~ 106 (375)
+......+.+.+-.++.+|++.|+..|.
T Consensus 154 ~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 154 LSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred cceeeecccccccccHHHHHHHHHHHhh
Confidence 2223334556678899999999999986
No 54
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=44.73 E-value=36 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=25.2
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeee
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPV 353 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~ 353 (375)
..|+|++.+ .||+|..+- ++.||-+|=..-.+.
T Consensus 99 ~~gfI~N~~-----~HWf~iRki--~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI--GGQWYNLDSKLKEPE 131 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE--TTEEEEECTTTSS-E
T ss_pred ceEEEeccC-----cceEEEEee--CCeeEeccCCCCCCc
Confidence 468888844 999999988 499999987654443
No 55
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=44.29 E-value=17 Score=24.21 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.1
Q ss_pred cccccccccceeEEEEe--ccCCceEEEEEcccc
Q psy15062 244 TCQYCKKQSDLVKLYEI--QRLPPVLILWFKRFS 275 (375)
Q Consensus 244 ~C~~C~~~~~~~~~~~~--~~~P~~L~i~l~R~~ 275 (375)
.|++|+...-.++.... ..+.+++-||.++|.
T Consensus 6 kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 6 KCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred cCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 59999988766666554 357788888888875
No 56
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=43.66 E-value=53 Score=17.95 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 55 LVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 55 l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
+..+|+.+.......|+...|...+.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567888888888888888888888764
No 57
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=42.49 E-value=66 Score=25.22 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=27.1
Q ss_pred ceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCc
Q psy15062 309 RYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTV 349 (375)
Q Consensus 309 ~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~ 349 (375)
...++|.|||- .+++|++++..+ +++|.+.-...
T Consensus 33 Ls~WrlqGiVg------~~~~~~gwl~~p-~g~W~Rv~~g~ 66 (132)
T PF10748_consen 33 LSQWRLQGIVG------QGDRWIGWLQDP-QGKWLRVRQGQ 66 (132)
T ss_pred cccceEccEEC------CCCcEEEEEECC-CCCeEEeccCC
Confidence 35899999993 348999999995 89999876554
No 58
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=42.23 E-value=76 Score=20.81 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHH
Q psy15062 54 ALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALN 106 (375)
Q Consensus 54 ~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~ 106 (375)
.|..+|..+.......++...|..++..+..... ++...+.+..++..+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~D 50 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS---DEESDEMIDQIFREFD 50 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST---HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhC
Confidence 3678899999988889999999999987654322 4555565555555444
No 59
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=41.97 E-value=1.2e+02 Score=21.55 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHH
Q psy15062 49 GQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEE 108 (375)
Q Consensus 49 ~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e 108 (375)
.+|...+...+.+|.... ..+..+.+++.|.+.++.+..-.+ |.+..-|..|-.+
T Consensus 10 iPL~EvlC~~I~dln~~~-~~at~E~l~~~L~~~yp~i~~Ps~----e~l~~~L~~Li~e 64 (80)
T PF10264_consen 10 IPLPEVLCWVISDLNAAG-QPATQETLREHLRKHYPGIAIPSQ----EVLYNTLGTLIKE 64 (80)
T ss_pred eeHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHc
Confidence 467888888888888655 688899999999998887665444 4444444444443
No 60
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=35.78 E-value=26 Score=22.59 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=9.3
Q ss_pred ceEEecCCCCcce
Q psy15062 159 SSVRCSNCKRTST 171 (375)
Q Consensus 159 ~~~~C~~C~~~~~ 171 (375)
..+.|+.||+.+.
T Consensus 3 ~Wi~CP~CgnKTR 15 (55)
T PF14205_consen 3 EWILCPICGNKTR 15 (55)
T ss_pred eEEECCCCCCccc
Confidence 3467889987753
No 61
>KOG1871|consensus
Probab=33.56 E-value=20 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=33.4
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP 40 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~ 40 (375)
-++|+.|.||-|+.++..|.+++..++...+...+..
T Consensus 177 t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~ 213 (420)
T KOG1871|consen 177 TPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKT 213 (420)
T ss_pred cccccccccccccccchhhcccccCchhhhcCCcccC
Confidence 3789999999999999999999999999998876655
No 62
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.43 E-value=69 Score=24.73 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=22.2
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEe
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRR 336 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~ 336 (375)
..-+.+|+|+-......+-||+|||.+
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 356789999998876456799999988
No 63
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=31.31 E-value=1.5e+02 Score=24.90 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=40.0
Q ss_pred cccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEeee
Q psy15062 244 TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNH 320 (375)
Q Consensus 244 ~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv~H 320 (375)
.|..|.......++..|.+-|..|..-..-|-+.. .+.- .+|.. ++|.. .......|+|.|.+..
T Consensus 24 ~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~--LiPG--~LPaS-~~lgs-------~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 24 HCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSY--LIPG--HLPAS-MDLGS-------TPLVSIKYELKAEATY 88 (191)
T ss_pred cChhHhccceeeeecceecCccccCCCcccCCeeE--ECCC--CCccc-cccCC-------CCcEEEEEEEEEEEEE
Confidence 89999999888888888888887654322222211 1111 22333 33322 1245679999999998
No 64
>KOG2757|consensus
Probab=30.90 E-value=1.2e+02 Score=28.16 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHhCCHHHHHHHccCCCC-CCCCCC-ChhhHHHHHHHHHHHHhcCCCcccc--HHHHHHHHhhhccCCCCCCccc
Q psy15062 18 NSVLQCLSNTPAFRNVLLNEDIP-IHPDSK-SQGQLVDALVNFMKMMWSSGNLVLN--TKAILLALRSYTKKFDGNQQQD 93 (375)
Q Consensus 18 NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~-~~~~l~~~l~~l~~~l~~~~~~~v~--~~~~~~~l~~~~~~~~~~~QqD 93 (375)
--+.|.|-.+|+||+++-+.... +..... ........|+.+|..|+......+. ...+.+.+ ...-+.+...|
T Consensus 147 ~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~---~~~~~~~~~~d 223 (411)
T KOG2757|consen 147 EEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRL---QNELNGFNLTD 223 (411)
T ss_pred HHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH---hccccccCccc
Confidence 35789999999999988642221 111111 2345667788899998887755322 22333333 33333344456
Q ss_pred hHHHHHH
Q psy15062 94 AQEFLLY 100 (375)
Q Consensus 94 a~E~l~~ 100 (375)
..|++..
T Consensus 224 ~~eli~~ 230 (411)
T KOG2757|consen 224 LEELILK 230 (411)
T ss_pred HHHHHHH
Confidence 5554443
No 65
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=29.56 E-value=86 Score=22.81 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=24.7
Q ss_pred EEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCcee
Q psy15062 315 CAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVS 351 (375)
Q Consensus 315 ~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~ 351 (375)
-+.|.+.++. +.|+-+.. +...++.|...|++..-
T Consensus 6 Gs~VRY~~TG-T~G~V~di-K~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 6 GSYVRYINTG-TVGKVVDI-KEEDGETWVLLDSTDLY 40 (91)
T ss_pred CCEEEECCCC-eEEEEEEE-EEeCCCeEEEEccCCce
Confidence 3456666655 78998888 44457899999887543
No 66
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=27.17 E-value=1.3e+02 Score=23.00 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.0
Q ss_pred EEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCch
Q psy15062 313 DLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ 356 (375)
Q Consensus 313 ~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~ 356 (375)
-+.|||+..-.. +.|. +|.|++|||.-...++.+
T Consensus 57 V~~AViVRtkk~--------~rR~--DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKKE--------VRRP--DGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCCc--------eEcC--CCCEEEeCCceEEEECCC
Confidence 356777765432 3333 799999999998888655
No 67
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=25.90 E-value=96 Score=15.23 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHh
Q psy15062 55 LVNFMKMMWSSGNLVLNTKAILLALR 80 (375)
Q Consensus 55 l~~l~~~l~~~~~~~v~~~~~~~~l~ 80 (375)
+..+|..+.......++...|...+.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666555545666666666654
No 68
>PHA02131 hypothetical protein
Probab=24.76 E-value=81 Score=20.31 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCeEEEEEEeCCCCcEEEecCCceeeeCc
Q psy15062 327 YGHYTAYCRREGTGRWYLYDDTVVSPVDA 355 (375)
Q Consensus 327 ~GHY~a~v~~~~~~~W~~~nD~~V~~~~~ 355 (375)
-|||.--+ ..|++|-|..|..+..
T Consensus 22 rgh~~~g~-----~c~imfk~~~v~dctf 45 (70)
T PHA02131 22 RGHYRFGI-----SCWIMFKNDQVIDCTF 45 (70)
T ss_pred ccceecce-----EEEEEEcCCCEEEeee
Confidence 38886333 5699999999988753
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=24.43 E-value=1.2e+02 Score=15.80 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCccccHHHHHHH
Q psy15062 55 LVNFMKMMWSSGNLVLNTKAILLA 78 (375)
Q Consensus 55 l~~l~~~l~~~~~~~v~~~~~~~~ 78 (375)
|...|..+.......|+..++.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456777888777778888777653
No 70
>PRK09750 hypothetical protein; Provisional
Probab=21.66 E-value=1.6e+02 Score=19.30 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=24.9
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhc
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVE 359 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~ 359 (375)
++|++.|.|.--|.+ | -.|.+|.|...+...=+..+
T Consensus 2 ykY~I~Ati~KpGg~------------P--~~W~r~s~~~mtk~ECeK~~ 37 (64)
T PRK09750 2 YMYKITATIEKEGGT------------P--TNWTRYSKSKLTKSECEKML 37 (64)
T ss_pred ceeEEEEEEECCCCC------------c--cceeEecCCcCCHHHHHHHh
Confidence 478888888777733 1 46999999887765544444
No 71
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=1.3e+02 Score=23.80 Aligned_cols=12 Identities=58% Similarity=1.165 Sum_probs=9.1
Q ss_pred CCcEEEecCCce
Q psy15062 339 TGRWYLYDDTVV 350 (375)
Q Consensus 339 ~~~W~~~nD~~V 350 (375)
+++||..|-+.-
T Consensus 119 ngrWyyiDgtv~ 130 (151)
T COG3012 119 NGRWYYIDGTVP 130 (151)
T ss_pred CCEEEEECCCCC
Confidence 589999887643
No 72
>KOG1491|consensus
Probab=20.96 E-value=47 Score=30.66 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=17.6
Q ss_pred CCccccccCCchhhHHHHHH
Q psy15062 3 PGLNGIANAGNTCYINSVLQ 22 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ 22 (375)
-|++||.|.|-+-++|++--
T Consensus 23 iGIVGlPNvGKST~fnalT~ 42 (391)
T KOG1491|consen 23 IGIVGLPNVGKSTFFNALTK 42 (391)
T ss_pred eeEeeCCCCchHHHHHHHhc
Confidence 58999999999999998754
No 73
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=20.78 E-value=83 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=13.6
Q ss_pred eEEecCCCCcceeecCCeeccccC
Q psy15062 160 SVRCSNCKRTSTVYEIFWELSLPV 183 (375)
Q Consensus 160 ~~~C~~C~~~~~~~~~~~~l~l~i 183 (375)
.++| .||+.--.-...+-+...|
T Consensus 24 ~vkc-~CGh~f~d~r~NwK~~alv 46 (112)
T PF08882_consen 24 VVKC-DCGHEFCDARENWKLGALV 46 (112)
T ss_pred eeec-cCCCeecChhcChhhCcEE
Confidence 5677 8888855544445444433
No 74
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=20.51 E-value=48 Score=30.96 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.1
Q ss_pred CCCccccccCCchhhHHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQC 23 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~ 23 (375)
.-|++||.|.|-+-++||+-+.
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~ 25 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKA 25 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcC
Confidence 3589999999999999998754
Done!