Query psy15062
Match_columns 375
No_of_seqs 129 out of 1212
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 19:29:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 6.1E-66 2.1E-70 482.9 30.2 342 2-375 5-358 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 2.3E-64 7.9E-69 469.3 31.3 327 1-375 5-342 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 1.3E-64 4.5E-69 477.1 27.5 325 2-375 59-395 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.7E-63 5.8E-68 464.7 23.4 329 3-375 1-350 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 1.1E-61 3.7E-66 460.1 26.6 320 2-375 11-393 (404)
6 1vjv_A Ubiquitin carboxyl-term 100.0 4.2E-61 1.4E-65 457.2 24.5 298 2-375 21-413 (415)
7 1nb8_A Ubiquitin carboxyl-term 100.0 5.8E-60 2E-64 439.2 28.0 294 1-375 2-314 (353)
8 3mhs_A Ubiquitin carboxyl-term 100.0 1.5E-59 5.1E-64 454.0 24.3 310 2-375 138-473 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 9.9E-57 3.4E-61 437.9 25.3 293 2-375 172-483 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 8.9E-57 3E-61 455.7 24.1 254 2-301 341-624 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 4E-34 1.4E-38 255.7 9.6 225 4-347 8-308 (374)
12 3mp2_A Non-structural protein 97.4 0.00036 1.2E-08 57.6 7.1 69 4-102 12-80 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 96.7 0.025 8.6E-07 49.8 12.8 74 4-102 101-174 (315)
14 1qmy_A Protease, leader protea 90.3 0.13 4.6E-06 38.8 2.2 38 314-357 109-146 (167)
15 4ekf_A Adenain; alpha and beta 60.3 8.9 0.0003 30.6 3.9 35 314-348 38-73 (204)
16 2ww6_A Fibritin, T4 fibritin; 38.5 21 0.00073 18.4 1.9 14 332-347 12-25 (27)
17 3ie4_A GRAM-negative binding p 35.1 63 0.0021 23.3 4.8 39 311-349 25-66 (107)
18 2lv7_A Calcium-binding protein 33.3 1E+02 0.0034 21.5 5.7 39 47-85 30-68 (100)
19 3o65_A Putative ataxin-3-like 30.2 46 0.0016 26.8 3.7 33 314-353 110-142 (191)
20 3aqy_A Beta-1,3-glucan-binding 28.9 86 0.003 22.5 4.6 23 326-348 44-66 (106)
21 1flt_X FLT-1, VGR1, FMS-like t 26.3 59 0.002 22.8 3.3 66 279-346 22-88 (95)
22 1k9u_A Polcalcin PHL P 7; poll 24.9 1.1E+02 0.0039 19.3 4.6 30 54-83 4-33 (78)
23 3a43_A HYPD, hydrogenase nicke 24.4 95 0.0033 23.4 4.4 17 156-172 66-82 (139)
24 2kha_A Beta-1,3-glucan-binding 23.5 1.3E+02 0.0044 22.5 4.8 23 326-348 53-75 (130)
25 2opo_A Polcalcin CHE A 3; calc 22.3 1.6E+02 0.0053 19.1 5.0 34 50-83 8-41 (86)
26 1qmy_A Protease, leader protea 20.7 60 0.002 24.6 2.5 21 5-25 13-33 (167)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.1e-66 Score=482.85 Aligned_cols=342 Identities=33% Similarity=0.625 Sum_probs=278.2
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCC--CCCChhhHHHHHHHHHHHHhcCCCccccHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHP--DSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILL 77 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~ 77 (375)
.+|++||.|+||||||||+||+|+++|+||++++..... .+. .......+..+|+.||++|+.+....++|..|..
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~ 84 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT 84 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHH
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 689999999999999999999999999999999875432 111 1134568999999999999998888999999999
Q ss_pred HHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCC-CCC-CCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVP-DQY-NGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
++....+.|..++||||+|||.+||+.|+++++... .++ ...+..+.++ ...+...|........++|.++|+|
T Consensus 85 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~----~~~a~~~w~~~~~~~~s~i~~~F~G 160 (367)
T 2y6e_A 85 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPD----AVVAKEAWENHRLRNDSVIVDTFHG 160 (367)
T ss_dssp HHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCH----HHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCch----hHHHHHHHHHHHHhcCCccccccCc
Confidence 999999999999999999999999999999984332 222 2222222221 2245566777777788999999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
++.+.++|..|+..+...++|..|+|+||......... . .+.. .....+..+|+++|+.|
T Consensus 161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~--------~-----------~~~~-~~~~~~~~sL~~~L~~f 220 (367)
T 2y6e_A 161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEG--------P-----------MLQP-QKKKKTTVALRDCIELF 220 (367)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSEEEECCC---------------------------------------CEEHHHHHHHH
T ss_pred EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCccee--------e-----------eecc-ccccCCCCCHHHHHHHh
Confidence 99999999999999999999999999999754210000 0 0000 00011223899999999
Q ss_pred cccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCc
Q psy15062 236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESR 309 (375)
Q Consensus 236 ~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~ 309 (375)
+..|.+++ +|++|+....+.++..|.++|++|+|||+||.++. ..|+...|.||.+.|||++|+.... ...
T Consensus 221 ~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~---~~~ 297 (367)
T 2y6e_A 221 TTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS---ARP 297 (367)
T ss_dssp TSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS---SCC
T ss_pred cccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC---CCC
Confidence 99999986 89999999999999999999999999999999875 6899999999973399999987653 345
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
..|+|+|||+|.|.. ++|||+||+|.+.+++|++|||+.|+++++++|.... ||||||+|+
T Consensus 298 ~~Y~L~avv~H~G~~-~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~----aYiLfY~r~ 358 (367)
T 2y6e_A 298 YVYDLIAVSNHYGAM-GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKA----AYVLFYQRR 358 (367)
T ss_dssp CEEEEEEEEEEECSS-SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTT----EEEEEEEEC
T ss_pred ceEEEEEEeecCCCC-CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCC----cEEEEEEEc
Confidence 799999999999985 9999999999966789999999999999999998766 999999996
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=2.3e-64 Score=469.30 Aligned_cols=327 Identities=39% Similarity=0.718 Sum_probs=279.3
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCCCCCChhhHHHHHHHHHHHHh-cCCCccccHHHHHH
Q psy15062 1 MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHPDSKSQGQLVDALVNFMKMMW-SSGNLVLNTKAILL 77 (375)
Q Consensus 1 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~v~~~~~~~ 77 (375)
.++|++||.|+||||||||+||+|+++|+||+++++.... .........++.++|+.||+.|+ ......++|..|..
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 3689999999999999999999999999999999875332 22333567899999999999999 45556999999999
Q ss_pred HHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCC--CCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQY--NGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
++....+.|..++||||+|||.+||+.|+++++...... ..... +.......+...|........++|.++|.|
T Consensus 85 ~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g 160 (348)
T 3nhe_A 85 QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL----DHLPDDEKGRQMWRKYLEREDSRIGDLFVG 160 (348)
T ss_dssp HHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCC----TTSCHHHHHHHHHHHHHTTCCCHHHHHHCE
T ss_pred HHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCcccc----ccCCchHHHHHHHHHHHhhcCCccccccce
Confidence 999999999999999999999999999999994432222 11111 112223356667777778889999999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
++.+.++|..|+..+...++|..|+|+|+..... .. +|+++|+.|
T Consensus 161 ~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~--~~---------------------------------sl~~~L~~~ 205 (348)
T 3nhe_A 161 QLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYP--EV---------------------------------TLMDCMRLF 205 (348)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCCSSCSS--CE---------------------------------EHHHHHHHH
T ss_pred EEEEEEEcCCCCCEeeeeccceEEeeeCCCcccC--CC---------------------------------CHHHHHHHh
Confidence 9999999999999999999999999999875321 11 899999999
Q ss_pred cccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCc
Q psy15062 236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESR 309 (375)
Q Consensus 236 ~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~ 309 (375)
+..|.+++ .|++|+....+.++..|.++|++|+|||+||.++. ..|+...|.||.+.|||.+++... ...
T Consensus 206 ~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~----~~~ 281 (348)
T 3nhe_A 206 TKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASEN----TNH 281 (348)
T ss_dssp HSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTT----CCC
T ss_pred cCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCC----CCC
Confidence 99999986 89999999999999999999999999999998775 789999999995339999998765 355
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
..|+|+|||+|.|+. .+|||+||+|.+.+++|++|||+.|+++++++|.... ||||||+|+
T Consensus 282 ~~Y~L~avv~H~G~~-~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~----aY~LfY~r~ 342 (348)
T 3nhe_A 282 AVYNLYAVSNHSGTT-MGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSD----AYLLFYELA 342 (348)
T ss_dssp CEEEEEEEEEEEECS-SCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTT----EEEEEEEEC
T ss_pred CcEEEEEEEEccCCC-CCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCC----ceEEEEEec
Confidence 789999999999965 8999999999976799999999999999999998766 999999995
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.3e-64 Score=477.06 Aligned_cols=325 Identities=34% Similarity=0.654 Sum_probs=275.1
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCCC--CCChhhHHHHHHHHHHHHhcCCCccccHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHPD--SKSQGQLVDALVNFMKMMWSSGNLVLNTKAILL 77 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~ 77 (375)
++|++||.|+||||||||+||+|+++|+||++++..... .... ......+..+|..++++||.+....++|..|..
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~ 138 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKI 138 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHH
Confidence 479999999999999999999999999999999875321 1111 134568999999999999998878999999999
Q ss_pred HHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCC-CC-CCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062 78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPD-QY-NGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG 155 (375)
Q Consensus 78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~ 155 (375)
++....+.|..++||||+|||.+||+.|++++..... .. .....+. ......+...|........++|.++|+|
T Consensus 139 ~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~----~~~~~~a~~~w~~~~~~~~s~I~~lF~G 214 (396)
T 2gfo_A 139 TIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH----LDDFKAAEHAWQKHKQLNESIIVALFQG 214 (396)
T ss_dssp HHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TT----SCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccc----cchhhHHHHHHHHhhhccCCccchhhCc
Confidence 9999999999999999999999999999999843321 11 1111111 1112345567777777888999999999
Q ss_pred eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062 156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF 235 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~ 235 (375)
++.+.++|..|+..+...++|..|+|+||... .. +|+++|+.|
T Consensus 215 ~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~----~~---------------------------------sL~~~L~~f 257 (396)
T 2gfo_A 215 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS----KC---------------------------------TLQDCLRLF 257 (396)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCSCSS----EE---------------------------------EHHHHHHHH
T ss_pred EEEEEEEeCCCCceecccccceeeeecccccc----cC---------------------------------CHHHHHHHh
Confidence 99999999999999999999999999998753 12 899999999
Q ss_pred cccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCc
Q psy15062 236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESR 309 (375)
Q Consensus 236 ~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~ 309 (375)
+..|.+++ +|++|+....+.++..|.++|+||+|||+||.++. ..|+...|.||.+.|||.+|+..+. ...
T Consensus 258 ~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~---~~~ 334 (396)
T 2gfo_A 258 SKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK---NNL 334 (396)
T ss_dssp TSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCC---SSC
T ss_pred CCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCC---CCC
Confidence 99999876 89999999999999999999999999999999886 5799999999953499999987643 345
Q ss_pred eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
..|+|+|||+|.| ++++|||+||+|...+++|++|||+.|+++++++|.... ||||||+|+
T Consensus 335 ~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~----aYiLfY~r~ 395 (396)
T 2gfo_A 335 KKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSA----AYILFYTSL 395 (396)
T ss_dssp CCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTT----EEEEEEECC
T ss_pred ceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCC----ceEEEEEEc
Confidence 6899999999999 559999999999966799999999999999999998766 999999985
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.7e-63 Score=464.72 Aligned_cols=329 Identities=34% Similarity=0.604 Sum_probs=265.1
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-CCCCCCChhhHHHHHHHHHHHHhcCCC-ccccHHHHHHHHh
Q psy15062 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-IHPDSKSQGQLVDALVNFMKMMWSSGN-LVLNTKAILLALR 80 (375)
Q Consensus 3 ~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~v~~~~~~~~l~ 80 (375)
+|++||.|+||||||||+||+|+++|+||+++++.... ..+......++..+|+.||.+|+.+.. ..++|..|..++.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 58999999999999999999999999999999864322 112223456899999999999998775 5899999999999
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCC--CCCC-----------CCCCCcccccchhhhhHHHHhhccCCC
Q psy15062 81 SYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQY--NGST-----------YSNTSSKQVGSFRALHYWEKFQTTEAS 147 (375)
Q Consensus 81 ~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (375)
...+.|..++||||+|||.+||+.|+++++...... .... .............+...|........+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999984322111 0000 000011111223455667777778889
Q ss_pred ccccccceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCC
Q psy15062 148 VFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT 227 (375)
Q Consensus 148 ~i~~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 227 (375)
+|.++|.|++.+.++|..|+..+...++|..|+|++|........ .+
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~---------------------------------~s 207 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGK---------------------------------VS 207 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC----------------------------------------CB
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCc---------------------------------cC
Confidence 999999999999999999999999999999999999875321111 28
Q ss_pred HHHHHhhhcccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCccccccc
Q psy15062 228 LYECLNKFFNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISA 301 (375)
Q Consensus 228 l~~~l~~~~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~ 301 (375)
|+++|+.|+..|.+++ .|++|+....+.++..|.++|++|+|||+||.++. ..|+...|.||.+.|+|.+++..
T Consensus 208 l~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~ 287 (355)
T 3i3t_A 208 LRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASD 287 (355)
T ss_dssp HHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-
T ss_pred HHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccC
Confidence 9999999999999985 89999999999999999999999999999998875 78999999999544999999866
Q ss_pred CCCCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 302 SGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 302 ~~~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
. .....|+|+|||+|.|+ +.+|||+||+|.+ +.|++|||+.|+++++++|.... ||||||+|.
T Consensus 288 ~----~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~--~~W~~~nD~~V~~v~~~~v~~~~----aYiLfY~r~ 350 (355)
T 3i3t_A 288 K----AGSPVYQLYALCNHSGS-VHYGHYTALCRCQ--TGWHVYNDSRVSPVSENQVASSE----GYVLFYQLM 350 (355)
T ss_dssp -------CCEEEEEEEEEEEEE-TTEEEEEEEEEET--TEEEEEETTEEEEECHHHHHTSC----CSEEEEEEC
T ss_pred C----CCCcceEEEEEEEecCC-CCCCeEEEEEEcC--CeEEEEcCCCcEECCHHHcCCCC----cEEEEEEec
Confidence 5 35578999999999996 4999999999995 77999999999999999998877 999999984
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.1e-61 Score=460.09 Aligned_cols=320 Identities=23% Similarity=0.325 Sum_probs=259.7
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLAL 79 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l 79 (375)
..+++||.|+||||||||+||+|+++|+||+++++.... .........+++++|+.||..|+.+. ..++|..|+.++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~l 89 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFL 89 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHHH
Confidence 357999999999999999999999999999999986543 11122456789999999999999865 789999999999
Q ss_pred hhhccCCC------CCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCcccccc
Q psy15062 80 RSYTKKFD------GNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIF 153 (375)
Q Consensus 80 ~~~~~~~~------~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F 153 (375)
....+.|. .++||||+|||.+||+.|+++++........ ...+...|........++|.++|
T Consensus 90 ~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~------------e~~~~~~~~~~~~~~~s~i~~~F 157 (404)
T 2ayn_A 90 HMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK------------ETDSSSASAATPSKKKSLIDQFF 157 (404)
T ss_dssp HHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------------------CCHHHHHT
T ss_pred HHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCccc------------ccchhhhhhhhccccCchhhhhc
Confidence 99888887 4899999999999999999998433211100 00122234444456678999999
Q ss_pred ceeeeceEEecCCCCcc--eeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHH
Q psy15062 154 VGQLRSSVRCSNCKRTS--TVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYEC 231 (375)
Q Consensus 154 ~~~~~~~~~C~~C~~~~--~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~ 231 (375)
+|.+.+.++|..|+..+ ...++|..|+|+|+.... +|.++
T Consensus 158 ~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~--------------------------------------~l~~~ 199 (404)
T 2ayn_A 158 GVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVK--------------------------------------YLFTG 199 (404)
T ss_dssp CEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCC--------------------------------------BHHHH
T ss_pred cEEEEEEEEecCCCCccCceeeccCceEEeecCCCcc--------------------------------------cHHHH
Confidence 99999999999999995 679999999999987532 89999
Q ss_pred HhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCC----
Q psy15062 232 LNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASG---- 303 (375)
Q Consensus 232 l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~---- 303 (375)
|+.++. +.+...|++|+....+.++..|.++|+||+|||+||.++. ..|+...|.||.+ |||.+|+....
T Consensus 200 L~~~~~-e~l~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~~~~~~ 277 (404)
T 2ayn_A 200 LKLRLQ-EEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLM-LDMYELCTPELQEKM 277 (404)
T ss_dssp HHHTTE-ECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSE-EECGGGBCHHHHHHT
T ss_pred HHHhcc-cceeecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCce-eEHhHhcChhhhhhc
Confidence 999886 4556689999999999999999999999999999999874 5899999999998 99999986420
Q ss_pred ------------------------------------------CCCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCc
Q psy15062 304 ------------------------------------------RRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGR 341 (375)
Q Consensus 304 ------------------------------------------~~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~ 341 (375)
........|+|+|||+|.|.++++|||+||+|. .+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~ 356 (404)
T 2ayn_A 278 VSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDE 356 (404)
T ss_dssp TTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTE
T ss_pred chhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC-CCCe
Confidence 011345789999999999986799999999998 3699
Q ss_pred EEEecCCceeeeCchhhccc---cCCCceEEEEEEeC
Q psy15062 342 WYLYDDTVVSPVDAQTVESA---EAEHGAYILVYQRR 375 (375)
Q Consensus 342 W~~~nD~~V~~~~~~~v~~~---~~~~~~yll~Y~r~ 375 (375)
|++|||+.|+++++++|... ..+++||||||+|+
T Consensus 357 W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~ 393 (404)
T 2ayn_A 357 WIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 393 (404)
T ss_dssp EEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred EEEeecccceecCHHHHHhhhCCCCCceEEEEEEEec
Confidence 99999999999999999753 35788999999985
No 6
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=4.2e-61 Score=457.18 Aligned_cols=298 Identities=22% Similarity=0.309 Sum_probs=249.9
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCC------ChhhHHHHHHHHHHHHhcCCCccccHHHH
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSK------SQGQLVDALVNFMKMMWSSGNLVLNTKAI 75 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~------~~~~l~~~l~~l~~~l~~~~~~~v~~~~~ 75 (375)
..+++||.|+||||||||+||+|+++|+||++++........... ...++.++|+.||..|+.+....++|..|
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~ 100 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL 100 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHH
Confidence 467999999999999999999999999999999986543211111 25689999999999999987789999999
Q ss_pred HHHHhhhccCCC-------CCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCc
Q psy15062 76 LLALRSYTKKFD-------GNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASV 148 (375)
Q Consensus 76 ~~~l~~~~~~~~-------~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (375)
..++....+.|. .++||||+|||.+||+.|+++++. ++
T Consensus 101 ~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----------------------------------~~ 145 (415)
T 1vjv_A 101 LNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----------------------------------KF 145 (415)
T ss_dssp HHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----------------------------------HH
T ss_pred HHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----------------------------------ch
Confidence 999999988888 799999999999999999998721 46
Q ss_pred cccccceeeeceEEecCCCCcc--eeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCC
Q psy15062 149 FSDIFVGQLRSSVRCSNCKRTS--TVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGG 226 (375)
Q Consensus 149 i~~~F~~~~~~~~~C~~C~~~~--~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
|.++|+ .+...++|..|+..+ ...++|..|+|+|+....
T Consensus 146 i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~-------------------------------------- 186 (415)
T 1vjv_A 146 SEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTN-------------------------------------- 186 (415)
T ss_dssp HTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCC--------------------------------------
T ss_pred HHHHHH-hheEEEEECCCCCCccccccccceeeeeccccccc--------------------------------------
Confidence 899999 999999999999987 468999999999987532
Q ss_pred CHHHHHhhhcccccccccccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccC
Q psy15062 227 TLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISAS 302 (375)
Q Consensus 227 sl~~~l~~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~ 302 (375)
+|.++|+.++.. .+...|++|+....+.++.+|.++|+||+|||+||.++. ..|+...|.||.+ |||.+|+...
T Consensus 187 ~l~~~L~~~~~e-~i~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~ 264 (415)
T 1vjv_A 187 FMRNGLLEGLNE-KIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQ-LDVADMLTPE 264 (415)
T ss_dssp BHHHHHHHHHEE-C---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSE-EECGGGBCHH
T ss_pred hHHHHHHHHhhh-hhhhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcE-eEhHHhcChh
Confidence 799999999874 455689999999999999999999999999999999875 5899999999998 9999998642
Q ss_pred C------------------------------------------------------------------------CCCCCce
Q psy15062 303 G------------------------------------------------------------------------RRVESRY 310 (375)
Q Consensus 303 ~------------------------------------------------------------------------~~~~~~~ 310 (375)
. .......
T Consensus 265 ~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (415)
T 1vjv_A 265 YAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSC 344 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSS
T ss_pred hhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCc
Confidence 0 0123457
Q ss_pred eeEEEEEeeeccCCCCCCeEEEEEEe-CCCCcEEEecCCceeeeCchhhccc---cCCCceEEEEEEeC
Q psy15062 311 TYDLCAVSNHIGKTALYGHYTAYCRR-EGTGRWYLYDDTVVSPVDAQTVESA---EAEHGAYILVYQRR 375 (375)
Q Consensus 311 ~Y~L~~vv~H~G~~~~~GHY~a~v~~-~~~~~W~~~nD~~V~~~~~~~v~~~---~~~~~~yll~Y~r~ 375 (375)
.|+|+|||+|.|.++++|||+||+|. ..+++||+|||+.|+++++++|... ..+++||||||+|+
T Consensus 345 ~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~ 413 (415)
T 1vjv_A 345 VYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF 413 (415)
T ss_dssp EEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred eEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEec
Confidence 89999999999976699999999998 5579999999999999999999853 35678999999996
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.8e-60 Score=439.21 Aligned_cols=294 Identities=26% Similarity=0.393 Sum_probs=249.3
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHh
Q psy15062 1 MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALR 80 (375)
Q Consensus 1 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~ 80 (375)
..+|++||.|+||||||||+||+|+++|+||++++..... ......++..+|+.+|..|+.+. ..+.|..|..++.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~---~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~ 77 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG 77 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT---TSCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHHT
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC---CCcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhhcC
Confidence 3689999999999999999999999999999999764321 12345678999999999999865 5788998888775
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeece
Q psy15062 81 SYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSS 160 (375)
Q Consensus 81 ~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~ 160 (375)
.+.|..++||||+|||.+||+.|+++++.. ...++|.++|+|++.+.
T Consensus 78 --~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-------------------------------~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 78 --WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp --CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS-------------------------------TTTTHHHHHHCEEEEEE
T ss_pred --CCCCCcccchhHHHHHHHHHHHHHHHhcCC-------------------------------CccchhhhhceeEEEEE
Confidence 356889999999999999999999987321 12457999999999999
Q ss_pred EEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccccc
Q psy15062 161 VRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240 (375)
Q Consensus 161 ~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~ 240 (375)
++|..|+..+...++|..|+|+|+... ++.++|..|+..|.
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~~---------------------------------------~l~~~L~~~~~~E~ 165 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGKK---------------------------------------NIFESFVDYVAVEQ 165 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTCS---------------------------------------BHHHHHHHHTCCEE
T ss_pred EEeccCCCeeceeeeeEEEEEEECCCc---------------------------------------chHHHHHHhhCccc
Confidence 999999999999999999999998653 89999999999999
Q ss_pred ccc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCceee
Q psy15062 241 LHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRYTY 312 (375)
Q Consensus 241 ~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y 312 (375)
+++ .|+.|+ ...+.++..|.++|++|+|||+||.++. ..|+...|.||.+ |||.+|+.... +.....|
T Consensus 166 l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~--~~~~~~Y 241 (353)
T 1nb8_A 166 LDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQ-LPLDEFLQKTD--PKDPANY 241 (353)
T ss_dssp ECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSE-EECGGGBSSCC--TTSCCEE
T ss_pred cCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCe-eehhhhhcccC--CCCCceE
Confidence 986 799886 4567888999999999999999999874 6899999999998 99999987643 2345789
Q ss_pred EEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcccc-----------CCCceEEEEEEeC
Q psy15062 313 DLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAE-----------AEHGAYILVYQRR 375 (375)
Q Consensus 313 ~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~-----------~~~~~yll~Y~r~ 375 (375)
+|+|||+|.|.. ++|||+||+|...+++|+.|||+.|+++++++|.... .+..||||||+|+
T Consensus 242 ~L~avv~H~G~~-~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 242 ILHAVLVHSGDN-HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp EEEEEEEEESST-TCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred EEEEEEEEeCCC-CCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence 999999999985 9999999999756799999999999999999886411 1356999999985
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.5e-59 Score=453.96 Aligned_cols=310 Identities=28% Similarity=0.531 Sum_probs=257.1
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC-CCCCCCChhhHHHHHHHHHHHHhcCCCc---------ccc
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP-IHPDSKSQGQLVDALVNFMKMMWSSGNL---------VLN 71 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~~---------~v~ 71 (375)
++|++||.|+||||||||+||+|+++|+||++++..... ......+..++.++|..+|+.|+..... .+.
T Consensus 138 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 217 (476)
T 3mhs_A 138 RDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNR 217 (476)
T ss_dssp TTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCS
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccC
Confidence 589999999999999999999999999999999864322 1122245678999999999999975432 455
Q ss_pred HHHHHHHHh---hhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCc
Q psy15062 72 TKAILLALR---SYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASV 148 (375)
Q Consensus 72 ~~~~~~~l~---~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (375)
|..+...+. +..+.|.+++||||+|||.+||+.|++++....... ............++
T Consensus 218 ~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~------------------~~~~~~~~~~~~s~ 279 (476)
T 3mhs_A 218 QTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA------------------KEVSRANNKQCECI 279 (476)
T ss_dssp CHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------------------------CCCSCCSH
T ss_pred cchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc------------------ccccccccccCCCc
Confidence 655555554 778899999999999999999999999984321110 00011112334678
Q ss_pred cccccceeeeceEEecCCCCccee-ecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCC
Q psy15062 149 FSDIFVGQLRSSVRCSNCKRTSTV-YEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT 227 (375)
Q Consensus 149 i~~~F~~~~~~~~~C~~C~~~~~~-~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 227 (375)
|.++|+|.+.+.++|..|+..+.. .++|..|+|+|+... +
T Consensus 280 i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~---------------------------------------s 320 (476)
T 3mhs_A 280 VHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK---------------------------------------K 320 (476)
T ss_dssp HHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCC---------------------------------------B
T ss_pred ceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhh---------------------------------------H
Confidence 999999999999999999999755 899999999998653 8
Q ss_pred HHHHHhhhcccccccc---cccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCCCCCccccccc
Q psy15062 228 LYECLNKFFNGETLHN---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPREGLDMEYYISA 301 (375)
Q Consensus 228 l~~~l~~~~~~e~~~~---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~~l~l~~~~~~ 301 (375)
|+++|+.|+..|.+++ .|++|+....+.++.+|.++|++|+|+|+||.++. ..|+...|.||.+ |||++|+..
T Consensus 321 l~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~-Ldl~~~~~~ 399 (476)
T 3mhs_A 321 LYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTY-LNMKNYCST 399 (476)
T ss_dssp HHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSE-EECGGGBSC
T ss_pred HHHHHHHhcChhhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCe-eechhhcCc
Confidence 9999999999999984 89999999999999999999999999999998653 6899999999998 999999977
Q ss_pred CCC------CCCCceeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062 302 SGR------RVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375 (375)
Q Consensus 302 ~~~------~~~~~~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~ 375 (375)
... .......|+|+|||+|.|+ +++|||+||+|. .+++|++|||+.|+++++++|.... ||||||+||
T Consensus 400 ~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~~~v~~~~----aYiLfY~r~ 473 (476)
T 3mhs_A 400 KEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKI-SGGQWFKFNDSMVSSISQEEVLKEQ----AYLLFYTIR 473 (476)
T ss_dssp CBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEEC-TTSCEEEEETTEEEEECHHHHTTSC----EEEEEEEEE
T ss_pred ccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEEC-CCCcEEEEeCCceEECCHHHhccCC----cEEEEEEEe
Confidence 643 1345678999999999997 599999999988 4789999999999999999998876 999999986
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=9.9e-57 Score=437.94 Aligned_cols=293 Identities=26% Similarity=0.396 Sum_probs=248.6
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS 81 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~ 81 (375)
.+|++||.|+||||||||+||+|+++|+||++++..... ......++..+|+.||..|+.+. ..+.|..|..++.
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~---~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~- 246 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG- 246 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC---SSCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHHTC-
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc---CCcccchHHHHHHHHHHHHhcCC-CccCcHHHHhhcC-
Confidence 579999999999999999999999999999999764321 12345678999999999999865 5788888877764
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062 82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV 161 (375)
Q Consensus 82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 161 (375)
.+.|..++||||+|||..||+.|+++++.. ...++|.++|+|++.+.+
T Consensus 247 -~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-------------------------------~~~s~i~~lF~G~~~s~i 294 (522)
T 2f1z_A 247 -WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVSYI 294 (522)
T ss_dssp -CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEEEEE
T ss_pred -CccCCCcccccHHHHHHHHHHHHHhhccCC-------------------------------ccccchhhheeEEEEEEE
Confidence 356889999999999999999999987421 124579999999999999
Q ss_pred EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062 162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241 (375)
Q Consensus 162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~ 241 (375)
+|..|+..+...++|..|+|+|+... ++.++|+.|+..|.+
T Consensus 295 ~C~~C~~~s~~~e~f~~LsL~i~~~~---------------------------------------~l~~~L~~~~~~E~l 335 (522)
T 2f1z_A 295 QCKEVDYRSDRREDYYDIQLSIKGKK---------------------------------------NIFESFVDYVAVEQL 335 (522)
T ss_dssp CCSSSCCCCCEEEEESCEEECCTTCC---------------------------------------BHHHHHHHHTCEEEE
T ss_pred EcCCCCceeeeeeeeEEEEEEeCCcc---------------------------------------cchHHHHHhhceeec
Confidence 99999999999999999999998653 899999999999999
Q ss_pred cc----cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCceeeE
Q psy15062 242 HN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYD 313 (375)
Q Consensus 242 ~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~ 313 (375)
++ .|+.|+ ...+.++..|.++|++|+|||+||.++. ..|+...|.||.+ |||.+|+.... +.....|+
T Consensus 336 ~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~-Ldl~~~~~~~~--~~~~~~Y~ 411 (522)
T 2f1z_A 336 DGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQ-LPLDEFLQKTD--PKDPANYI 411 (522)
T ss_dssp CTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSE-EECGGGBSSCC--TTSCCEEE
T ss_pred CCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCe-ecchhhhcccc--CCCCcEEE
Confidence 86 799886 4667889999999999999999998774 5799999999998 99999987643 23457899
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcccc-----------CCCceEEEEEEeC
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAE-----------AEHGAYILVYQRR 375 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~-----------~~~~~yll~Y~r~ 375 (375)
|+|||+|.|.. ++|||+||+|...+++|++|||+.|+++++++|.... .+..||||||+|+
T Consensus 412 L~avv~H~G~~-~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 412 LHAVLVHSGDN-HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp EEEEEEEECSS-SCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred EEEEEEecccC-CCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence 99999999986 9999999999756799999999999999999887411 1356999999995
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.9e-57 Score=455.69 Aligned_cols=254 Identities=20% Similarity=0.331 Sum_probs=203.7
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCC--CCCCCChhhHHHHHHHHHHHHhcCC-------------
Q psy15062 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI--HPDSKSQGQLVDALVNFMKMMWSSG------------- 66 (375)
Q Consensus 2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~------------- 66 (375)
++|++||.|+||||||||+||+|+++|+||++++...... .....+..++.++|+.||..|+...
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~ 420 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER 420 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence 5899999999999999999999999999999998532210 1223567789999999999999743
Q ss_pred -------CccccHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHH
Q psy15062 67 -------NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWE 139 (375)
Q Consensus 67 -------~~~v~~~~~~~~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (375)
...++|..|..++....+.|..++||||+|||.+||+.|+++++
T Consensus 421 ~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~----------------------------- 471 (854)
T 3ihp_A 421 VPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR----------------------------- 471 (854)
T ss_dssp --------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-----------------------------
T ss_pred ccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-----------------------------
Confidence 23899999999999999999999999999999999999999873
Q ss_pred HhhccCCCccccccceeeeceEEecCCCCcceeecCCeeccccCCCCCCCcce-e---eecccccccCCCCCCceeeeec
Q psy15062 140 KFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYE-C---QLRSSVRCSNCKRTSTVYEIFW 215 (375)
Q Consensus 140 ~~~~~~~~~i~~~F~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
..+.+.++|.|.+.+.++|..|+..+...++|+.|+|+||........ . +.+....-....+
T Consensus 472 -----~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~--------- 537 (854)
T 3ihp_A 472 -----SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMA--------- 537 (854)
T ss_dssp -----TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCC---------
T ss_pred -----ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhccccccccccccc---------
Confidence 134689999999999999999999999999999999999975321000 0 0000000000000
Q ss_pred ccCCCCCCCCCCHHHHHhhhcccccccc-cccccccccceeEEEEeccCCceEEEEEccccccc---cccccCcccCCCC
Q psy15062 216 ELSLPVPPGGGTLYECLNKFFNGETLHN-TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF---TQKVTSPIKFPRE 291 (375)
Q Consensus 216 ~~~~~~~~~~~sl~~~l~~~~~~e~~~~-~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~---~~k~~~~v~~p~~ 291 (375)
......+..+|+++|+.|+..|.+++ +|++|+.+..+.++..|.++|+||+|||+||.++. ..|+...|.||..
T Consensus 538 --~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~ 615 (854)
T 3ihp_A 538 --LPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEE 615 (854)
T ss_dssp --CCCCCCEECCHHHHHHHHHSCEEEEEEEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSE
T ss_pred --ccccccCCCCHHHHHHHhcCceEeeeeeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCc
Confidence 00000112389999999999999997 99999999999999999999999999999999854 6899999999998
Q ss_pred CCCccccccc
Q psy15062 292 GLDMEYYISA 301 (375)
Q Consensus 292 ~l~l~~~~~~ 301 (375)
|||++|+..
T Consensus 616 -LDl~~y~~~ 624 (854)
T 3ihp_A 616 -LDISQLRGT 624 (854)
T ss_dssp -EECGGGBCC
T ss_pred -EehHHhccC
Confidence 999999663
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=255.74 Aligned_cols=225 Identities=20% Similarity=0.313 Sum_probs=158.5
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHH-HHHHHHHhcCCCccccHHHHHHHHhhh
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDAL-VNFMKMMWSSGNLVLNTKAILLALRSY 82 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~v~~~~~~~~l~~~ 82 (375)
-+.||.|+||||||||+||+|+++|.+++.++........ ......+..+| +.+|..|.. ..+.|..++..|++.
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR~~ 83 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLRKI 83 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHHH
Confidence 4899999999999999999999999999999977533222 23435688899 899999997 578888888888888
Q ss_pred ccCCCC-----CCccchHHHHHHHHHHHHHH-h--ccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccc
Q psy15062 83 TKKFDG-----NQQQDAQEFLLYLLAALNEE-A--KVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFV 154 (375)
Q Consensus 83 ~~~~~~-----~~QqDa~E~l~~ll~~L~~e-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~ 154 (375)
.|+|.. ..||||+|||+.||..|... + +..... .....+.+.++|.
T Consensus 84 ~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~--------------------------~~~~~~~~~q~f~ 137 (374)
T 2vhf_A 84 LEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAG--------------------------QKVQDCYFYQIFM 137 (374)
T ss_dssp HHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETT--------------------------CCCEEESCEECCC
T ss_pred hHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccccc--------------------------ccccccHHHHHhc
Confidence 776653 67999999999999988754 2 100000 0000123333332
Q ss_pred eeeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHh-
Q psy15062 155 GQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLN- 233 (375)
Q Consensus 155 ~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~- 233 (375)
.-+.. +...+++++++
T Consensus 138 ---------------------------E~~e~------------------------------------~~~e~~~qL~e~ 154 (374)
T 2vhf_A 138 ---------------------------EKNEK------------------------------------VGVPTIQQLLEW 154 (374)
T ss_dssp ---------------------------CCC--------------------------------------CCCCBHHHHHHH
T ss_pred ---------------------------Ccccc------------------------------------cCCcHHHHhhhH
Confidence 00000 00116777765
Q ss_pred hhcccccccccccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCC----------
Q psy15062 234 KFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASG---------- 303 (375)
Q Consensus 234 ~~~~~e~~~~~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~---------- 303 (375)
+|+... .+|.++|+||+||+.|| +...||.+.|.||.+ ||+.++++..-
T Consensus 155 nfl~~g------------------ikisrLP~yLtVq~vRF--gKkaKIlrkV~fp~e-LDvtdl~tdelr~~~vr~kl~ 213 (374)
T 2vhf_A 155 SFINSN------------------LKFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLE-LNITDLLEDTPRQCRICGGLA 213 (374)
T ss_dssp HHHHHT------------------EEESSCCSEEEEECCCC--SSSSSCCCCCBCCSE-ECCGGGBSSSCCBCTTTSCBC
T ss_pred HHHHcC------------------CeeecCCcceEEeeecc--CccccccCCCCCcch-hccHhhcCcchhhccHhHHHH
Confidence 344332 34999999999999999 445699999999999 99999876530
Q ss_pred ----------------C---------------------------------------CCCCceeeEEEEEeeeccCCCCCC
Q psy15062 304 ----------------R---------------------------------------RVESRYTYDLCAVSNHIGKTALYG 328 (375)
Q Consensus 304 ----------------~---------------------------------------~~~~~~~Y~L~~vv~H~G~~~~~G 328 (375)
. ....+..|+|+|||+ +++|
T Consensus 214 e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsg 288 (374)
T 2vhf_A 214 MYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETS 288 (374)
T ss_dssp CEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETT
T ss_pred HHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCC
Confidence 0 011237899999999 4789
Q ss_pred eEEEEEEeC-CCCcEEEecC
Q psy15062 329 HYTAYCRRE-GTGRWYLYDD 347 (375)
Q Consensus 329 HY~a~v~~~-~~~~W~~~nD 347 (375)
||+||||.+ ++++|+.||-
T Consensus 289 HYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 289 HYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp EEEEEEECSSSTTCEEEEET
T ss_pred ceEEEEEecCCCCCeEEEec
Confidence 999999973 4689999984
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.40 E-value=0.00036 Score=57.55 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=45.7
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
|.+=|.-.-|+||+||++=.|=.+... ++.++.++..+ +|..|...+-...
T Consensus 12 G~~vLkq~dNNCwVNaa~l~LQ~~~~~------------------------~~~aw~~f~~G-----d~~~fV~~~Ya~~ 62 (211)
T 3mp2_A 12 GKIILKQGDNNCWINACCYQLQAFDFF------------------------NNEAWEKFKKG-----DVMDFVNLCYAAT 62 (211)
T ss_dssp TEEEECCCTTCHHHHHHHHHHTTCTTC------------------------CCHHHHHHTTT-----CCHHHHHHHHHHH
T ss_pred CEEEEEccCCCcHHHHHHHHHHhcChh------------------------HHHHHHHHhCC-----ChHHHHHHHHHHc
Confidence 444455567999999998766544432 22334443333 3677777775544
Q ss_pred cCCCCCCccchHHHHHHHH
Q psy15062 84 KKFDGNQQQDAQEFLLYLL 102 (375)
Q Consensus 84 ~~~~~~~QqDa~E~l~~ll 102 (375)
....|+--||+++|..|+
T Consensus 63 -~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 63 -TLARGHSGDAEYLLELML 80 (211)
T ss_dssp -TCCTTSCCCHHHHHHHHH
T ss_pred -CCCCCCCcCHHHHHHHHH
Confidence 355789999999999987
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.73 E-value=0.025 Score=49.75 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=46.7
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
|++=|.=.-|+||+||++=.|=.+.. . -..+ .++.++.++..+ +|..|...+-...
T Consensus 101 G~~vLkq~dNNCwVNaa~l~LQ~~~~--------~--------F~~~---~l~~aw~~f~~G-----d~~~FVa~~Ya~~ 156 (315)
T 2fe8_A 101 GLTSIKWADNNCYLSSVLLALQQLEV--------K--------FNAP---ALQEAYYRARAG-----DAANFCALILAYS 156 (315)
T ss_dssp TEECCCCCTTTHHHHHHHHHHHTSCC--------C--------BSSH---HHHHHHHHHHHT-----CCHHHHHHHHHHT
T ss_pred CEEEEeecCCccHHHHHHHHHHhcCC--------c--------cCCH---HHHHHHHHHhCC-----ChHHHHHHHHHhc
Confidence 44455556799999999866643321 0 0112 233444444444 4778888886655
Q ss_pred cCCCCCCccchHHHHHHHH
Q psy15062 84 KKFDGNQQQDAQEFLLYLL 102 (375)
Q Consensus 84 ~~~~~~~QqDa~E~l~~ll 102 (375)
. ...|+--||+++|..|+
T Consensus 157 ~-~~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 157 N-KTVGELGDVRETMTHLL 174 (315)
T ss_dssp T-CCTTSCCCHHHHHHHHH
T ss_pred C-CCCCCCccHHHHHHHHH
Confidence 4 34789999999999984
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=90.31 E-value=0.13 Score=38.82 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=27.5
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchh
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQT 357 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~ 357 (375)
.+|-|.-.| .+|-|-++-. +.-||.+||+...+..++.
T Consensus 109 fhAgIflkg----~eHAVFa~~T--S~GWyaiDDe~fypwtPdp 146 (167)
T 1qmy_A 109 FHAGIFLKG----QEHAVFACVT--SNGWYAIDDEDFYPWTPDP 146 (167)
T ss_dssp EEEEEEEET----TTEEEEEECC--TTSSEEEETTEEEECCCCG
T ss_pred hhhheeecC----CCceEEEEEc--cCceEEecccccccCCCCh
Confidence 455555555 3898877766 4889999999999986544
No 15
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=60.29 E-value=8.9 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=23.9
Q ss_pred EEEEeeeccCCCCCC-eEEEEEEeCCCCcEEEecCC
Q psy15062 314 LCAVSNHIGKTALYG-HYTAYCRREGTGRWYLYDDT 348 (375)
Q Consensus 314 L~~vv~H~G~~~~~G-HY~a~v~~~~~~~W~~~nD~ 348 (375)
+...|+-.|...++| ||.|+..+|...+-|+||--
T Consensus 38 ~a~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDPf 73 (204)
T 4ekf_A 38 LACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPF 73 (204)
T ss_dssp CEEEEEESCC----CCCEEEEEEETTTTEEEEECTB
T ss_pred cceeEEecCCcccCceeEEEeEecCCcceEEEeCCC
Confidence 444555556554555 99999999988899999853
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=38.45 E-value=21 Score=18.35 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=11.1
Q ss_pred EEEEeCCCCcEEEecC
Q psy15062 332 AYCRREGTGRWYLYDD 347 (375)
Q Consensus 332 a~v~~~~~~~W~~~nD 347 (375)
+|||++ +.|+..++
T Consensus 12 ~Yvr~d--g~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKF--GEWVLLST 25 (27)
T ss_dssp EEEEET--TEEEEGGG
T ss_pred eeEEEc--CeEEEccc
Confidence 588884 99998765
No 17
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=35.10 E-value=63 Score=23.27 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=27.0
Q ss_pred eeEEEEEeeeccC---CCCCCeEEEEEEeCCCCcEEEecCCc
Q psy15062 311 TYDLCAVSNHIGK---TALYGHYTAYCRREGTGRWYLYDDTV 349 (375)
Q Consensus 311 ~Y~L~~vv~H~G~---~~~~GHY~a~v~~~~~~~W~~~nD~~ 349 (375)
.+.|+|+=.-... ....|+|...+..+.+|+|+.-|+..
T Consensus 25 gi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~ 66 (107)
T 3ie4_A 25 GITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWTFRDRIT 66 (107)
T ss_dssp TEEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEESSC
T ss_pred CCEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEEEECCCc
Confidence 4556555444332 23559999999888889999988863
No 18
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=33.33 E-value=1e+02 Score=21.48 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhccC
Q psy15062 47 SQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKK 85 (375)
Q Consensus 47 ~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~~~ 85 (375)
....-...|+..|+.++......|+...|..+|..++..
T Consensus 30 l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~ 68 (100)
T 2lv7_A 30 IPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYM 68 (100)
T ss_dssp CCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC
Confidence 344567789999999998888899999999999887543
No 19
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=30.18 E-value=46 Score=26.77 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=25.7
Q ss_pred EEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeee
Q psy15062 314 LCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPV 353 (375)
Q Consensus 314 L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~ 353 (375)
..|+|++.. -||+|..|-+ +.||-+|=..-.+.
T Consensus 110 ~~~FI~N~~-----~HWfaiRkig--g~WyNLdS~l~~P~ 142 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKFG--KHWFNLNSLLAGPE 142 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEET--TEEEECCTTSSSCE
T ss_pred hhhhhhccc-----cceeeEEecC--CEEEEccCCCCCCC
Confidence 457888864 8999999884 89999997654443
No 20
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=28.87 E-value=86 Score=22.48 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.8
Q ss_pred CCCeEEEEEEeCCCCcEEEecCC
Q psy15062 326 LYGHYTAYCRREGTGRWYLYDDT 348 (375)
Q Consensus 326 ~~GHY~a~v~~~~~~~W~~~nD~ 348 (375)
..|+|...+..+.+|+|+.-|+.
T Consensus 44 ~~g~~~~dit~~~~GrW~~~d~~ 66 (106)
T 3aqy_A 44 EAGHWARDITKPKEGRWTFRDRN 66 (106)
T ss_dssp CCCSEEEEECCCBTTEEEEEECS
T ss_pred ccceeeeeeeEecCCEEEEECCc
Confidence 45999999988888999988875
No 21
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=26.26 E-value=59 Score=22.76 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=41.9
Q ss_pred cccccCcccCCCCCCCcccccccCCCCCCCceeeEE-EEEeeeccCCCCCCeEEEEEEeCCCCcEEEec
Q psy15062 279 TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDL-CAVSNHIGKTALYGHYTAYCRREGTGRWYLYD 346 (375)
Q Consensus 279 ~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L-~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~n 346 (375)
..-+.+.+..|...+.|..+-...-..+.....|.. .|++.|.-.....|.|+|-.+.+ |+++.=+
T Consensus 22 ~~viPC~vTdP~~~VtL~~~~~~~l~~d~~~~~~D~k~Gf~I~~~~~~~~g~y~C~a~~~--g~~~~S~ 88 (95)
T 1flt_X 22 ELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN--GHLYKTN 88 (95)
T ss_dssp CEEECCCBSCTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET--TEEEEEE
T ss_pred cEEEEeEcCCCCCcEEEEecCCcccCcCCceeeECCCCCEEEeCCCcccCcEEEEEEEEC--CEEEEEE
Confidence 367888888887545553221111112234567776 58888876655789999999885 7766543
No 22
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=24.88 E-value=1.1e+02 Score=19.31 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 54 ALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 54 ~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
.+..+|..+.......|+...+..++..++
T Consensus 4 ~l~~~F~~~D~~~~G~i~~~el~~~l~~~g 33 (78)
T 1k9u_A 4 DMERIFKRFDTNGDGKISLSELTDALRTLG 33 (78)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhC
Confidence 466777777776666888888888887654
No 23
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.40 E-value=95 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=12.6
Q ss_pred eeeceEEecCCCCccee
Q psy15062 156 QLRSSVRCSNCKRTSTV 172 (375)
Q Consensus 156 ~~~~~~~C~~C~~~~~~ 172 (375)
...-..+|..||+.-..
T Consensus 66 ~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EECCEEEETTTCCEEEG
T ss_pred ecCCcEECCCCCCEEec
Confidence 45567889999988544
No 24
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=23.54 E-value=1.3e+02 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.5
Q ss_pred CCCeEEEEEEeCCCCcEEEecCC
Q psy15062 326 LYGHYTAYCRREGTGRWYLYDDT 348 (375)
Q Consensus 326 ~~GHY~a~v~~~~~~~W~~~nD~ 348 (375)
..|+|...+....+|+|+.-|+.
T Consensus 53 ~~G~~~~dit~~~~GrW~~~d~~ 75 (130)
T 2kha_A 53 EAGHWARDITKPKEGRWTFRDRN 75 (130)
T ss_dssp CCCSEEEEECSCSSSEEEEEETT
T ss_pred ccceeeeeeeeecCCEEEEECCc
Confidence 45899988888888899887764
No 25
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.31 E-value=1.6e+02 Score=19.08 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062 50 QLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT 83 (375)
Q Consensus 50 ~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~ 83 (375)
.-...+..+|..+.......|+...+..++..++
T Consensus 8 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 8 QDIADRERIFKRFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC
Confidence 4467788899999887777999999999998754
No 26
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=20.72 E-value=60 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.8
Q ss_pred ccccccCCchhhHHHHHHHHh
Q psy15062 5 LNGIANAGNTCYINSVLQCLS 25 (375)
Q Consensus 5 ~~GL~N~gntCy~NsvLQ~L~ 25 (375)
+.|+.|.-++||+|++||+..
T Consensus 13 fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHH
Confidence 578999999999999999765
Done!