RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15062
(375 letters)
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 222 bits (567), Expect = 4e-70
Identities = 112/376 (29%), Positives = 161/376 (42%), Gaps = 69/376 (18%)
Query: 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMM 62
G G+AN GNTCY+NSVLQ L + P R+ LL + S QL AL + +
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHAL 60
Query: 63 WS--SGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGST 120
S S N ++ K L AL + +F G QQDA EFLL+LL L+E+
Sbjct: 61 QSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHED------------ 108
Query: 121 YSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELS 180
+L + S+ + +F GQL S ++C CK+ S+ E F +LS
Sbjct: 109 -----------LNSLKKRKSHAAENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLS 157
Query: 181 LPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240
LP+ SSV + E+ E
Sbjct: 158 LPIED----------SSSVLKLLTGNFLKLEELEKEEK---------------------- 185
Query: 241 LHNTCQYCKKQSDLVKLYEIQRLPPVLIL---WFKRFSSNFTQKVTSPIKFPREGLDMEY 297
C C + + +K +I RLPPVLI+ F+ F+ +K++ ++FP E LD+
Sbjct: 186 --YYCPKCGGKQNAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLE-LDLSS 242
Query: 298 YISASGRRVESRYT-YDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ 356
Y+ E T Y+L AV H G + GHY AY ++ +W +DD VS V +
Sbjct: 243 YLE-EELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEE 301
Query: 357 TVESAEAEHGAYILVY 372
V + AYIL Y
Sbjct: 302 EVLRSS----AYILFY 313
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 190 bits (484), Expect = 8e-59
Identities = 95/291 (32%), Positives = 123/291 (42%), Gaps = 86/291 (29%)
Query: 89 NQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASV 148
QQDAQEFLL+LL L+ S+
Sbjct: 20 ADQQDAQEFLLFLLDGLH----------------------------------------SI 39
Query: 149 FSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTS 208
D+F GQL+S + C C +TST +E F LSLP+P G G +
Sbjct: 40 IVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKV--------------- 84
Query: 209 TVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN----TCQYCKKQSDLVKLYEIQRLP 264
TL +CL F ETL C CKK+ K I RLP
Sbjct: 85 ------------------TLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLP 126
Query: 265 PVLILWFKRFSSN--FTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIG 322
VLI+ KRFS + T+K+T+P+ FP LD+ Y+ + YDL AV NH G
Sbjct: 127 KVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSF--TGPFKYDLYAVVNHYG 184
Query: 323 KTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373
GHYTAYC+ T WY +DD+ V+ V +V S+ AYIL Y+
Sbjct: 185 SLN-GGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS----SAYILFYE 230
Score = 45.7 bits (109), Expect = 1e-05
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 7 GIANAGNTCYINSVLQCLSNT 27
G+ N GNTCY+NS+LQCLS
Sbjct: 1 GLRNLGNTCYMNSILQCLSAD 21
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 181 bits (461), Expect = 4e-55
Identities = 89/309 (28%), Positives = 125/309 (40%), Gaps = 75/309 (24%)
Query: 74 AILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFR 133
++L AL S +QQDA EFLL+LL L+EE K + + S+
Sbjct: 13 SVLQALFS--------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK---------- 54
Query: 134 ALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYEC 193
S+ D+F G+L S++ C C S E LSLP+P G
Sbjct: 55 -------------SLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQV-- 99
Query: 194 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYC---KK 250
+L +CL KFF E L Y KK
Sbjct: 100 ---------------------------------SLEDCLEKFFKEEILEGDNCYKCEKKK 126
Query: 251 QSDLVKLYEIQRLPPVLILWFKRFSSNFT---QKVTSPIKFPREGLDMEYYISA--SGRR 305
+ + K +I++LPPVLI+ KRFS N +K+ + + FP E Y
Sbjct: 127 KQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDS 186
Query: 306 VESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEH 365
Y Y+L AV H G +A GHY AY + G+WY ++D V+ V + V +
Sbjct: 187 DNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLS 246
Query: 366 G-AYILVYQ 373
AYIL Y+
Sbjct: 247 SSAYILFYE 255
Score = 43.2 bits (102), Expect = 9e-05
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 7 GIANAGNTCYINSVLQCLSN 26
G+ N GNTCY+NSVLQ L +
Sbjct: 1 GLNNLGNTCYLNSVLQALFS 20
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 176 bits (448), Expect = 1e-52
Identities = 116/371 (31%), Positives = 162/371 (43%), Gaps = 75/371 (20%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQG-QLVDALVNFMKMMWSS 65
G+ N GNTC++NSVLQCL++TP N LL+ + D ++G ++ AL ++ +S
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREH--SKDCCNEGFCMMCALEAHVERALAS 60
Query: 66 GNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTS 125
+ L+ +K F +Q+DA EFL YLL A+ K D++ + S
Sbjct: 61 SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQ---KACLDRFKKLKAVDPS 117
Query: 126 SKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPP 185
S+ T+ V +IF
Sbjct: 118 SQ----------------------------------------ETTLVQQIF--------- 128
Query: 186 GGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-- 243
GG LRS V+C NCK S Y+ F +LSL + G +L + L +F E L
Sbjct: 129 GGY------LRSQVKCLNCKHVSNTYDPFLDLSLDIK-GADSLEDALEQFTKPEQLDGEN 181
Query: 244 --TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISA 301
C+ CKK+ K I R P VL + KRFS+ K+ I FP E LD+ Y+S
Sbjct: 182 KYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFP-ETLDLSPYMSQ 240
Query: 302 SGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESA 361
+ Y L AV H G + GHY Y + G+WY DD+ VSPV +TV S
Sbjct: 241 PN---DGPLKYKLYAVLVHSGFSPHSGHYYCYV-KSSNGKWYNMDDSKVSPVSIETVLS- 295
Query: 362 EAEHGAYILVY 372
AYIL Y
Sbjct: 296 ---QKAYILFY 303
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 174 bits (443), Expect = 1e-51
Identities = 111/381 (29%), Positives = 160/381 (41%), Gaps = 70/381 (18%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQ-GQLVDALVNFMKMMWSS 65
G+ N G TC++N +LQ L + P RN L++ S S L A+ + + S
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61
Query: 66 GNLVLNTKAILLALRSYT--KKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSN 123
G+ LL L S+ + G QQDA EF +LL L+ ++ N ++ N
Sbjct: 62 GDRSPYGPINLLYL-SWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCN 120
Query: 124 TSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPV 183
Q F G L+SSV C C ST + F +LSL +
Sbjct: 121 CIIHQ-----------------------TFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157
Query: 184 PPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL-- 241
P W L G TL +CL++F E L
Sbjct: 158 PNKSTP------------------------SWALGESGVSGTPTLSDCLDRFTRPEKLGD 193
Query: 242 -HNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQ---KVTSPIKFPREGLDMEY 297
C C + K I++LPPVL KRF + + K+ + ++FP E L+M
Sbjct: 194 FAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLE-LNMTP 252
Query: 298 YISASGRRV------ESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVS 351
Y S+S + YTYDL AV H G T GHYTAYC R+G G+W+ +DD +++
Sbjct: 253 YTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYC-RQGDGQWFKFDDAMIT 310
Query: 352 PVDAQTVESAEAEHGAYILVY 372
V + V ++ AY+L Y
Sbjct: 311 RVSEEEVLKSQ----AYLLFY 327
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 153 bits (390), Expect = 1e-43
Identities = 102/414 (24%), Positives = 145/414 (35%), Gaps = 126/414 (30%)
Query: 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIH-PDSKS---QGQLVDALVNFM 59
G G+ N G TCY+NS+LQ L TP FRN + + D+KS Q + +
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60
Query: 60 KMMWSSGNLVLNTKAILLALRSYTKKFDGN-----QQQDAQEFLLYLLAALNEEAKVVPD 114
+ + L T+ F + +Q D QEF L L E+ K
Sbjct: 61 E-----------SPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLK---- 105
Query: 115 QYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYE 174
T + + ++F G+L + + C C S E
Sbjct: 106 ---------------------------GTGQEGLIKNLFGGKLVNYIICKECPHESEREE 138
Query: 175 IFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNK 234
F +L + V K L E L+
Sbjct: 139 YFLDLQVAV------------------KGKK---------------------NLEESLDA 159
Query: 235 FFNGETLH--N--TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFT----QKVTSPI 286
+ GETL N C+ C K+ D K ++LPPVL L KRF +F K+
Sbjct: 160 YVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRF 219
Query: 287 KFPREGLDMEYYISASGRR--------VESRYTYDLCAVSNHIGKTALYGHYTAYCRREG 338
+FP E LDME Y + Y Y+L V H G A GHY +Y +
Sbjct: 220 EFPLE-LDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRD 277
Query: 339 TGRWYLYDDTVVSPVDAQTVESA------------------EAEHGAYILVYQR 374
G+WY ++D VV+P D E + AY+L Y+R
Sbjct: 278 DGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYER 331
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 136 bits (344), Expect = 1e-37
Identities = 102/395 (25%), Positives = 140/395 (35%), Gaps = 144/395 (36%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG 66
G++N GNTC+ N+V+Q LS TPA R +L
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------ 30
Query: 67 NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSS 126
K + + +F G QQQD+ E L YLL L D
Sbjct: 31 ----TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR----TFIDS----------- 71
Query: 127 KQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPG 186
IF G+L S++ C +C S VYE F +LSLP
Sbjct: 72 -------------------------IFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSD- 105
Query: 187 GGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQ 246
EI E S+ CL +F E L +
Sbjct: 106 -------------------------EIKSECSIE---------SCLKQFTEVEILEGNNK 131
Query: 247 Y-CKKQSDLVKLYEIQRLPPVLILWFKRF----SSNFTQKVTSPIKFPREGLDMEYYISA 301
+ C+ + K Y I +LPPVL++ KRF S+N +KV+ + FP E LD+ +
Sbjct: 132 FACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANL-RKVSRHVSFP-EILDLAPFCDP 189
Query: 302 SGRRVE--SRYTYDLCAVSNHIGKTALYGHYTAYCR---------------------REG 338
E S Y L V H G T GHY AY + G
Sbjct: 190 KCNSSEDKSSVLYRLYGVVEHSG-TMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPG 248
Query: 339 TGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373
+G+WY D+ V V + V +E AY+L Y+
Sbjct: 249 SGQWYYISDSDVREVSLEEVLKSE----AYLLFYE 279
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 130 bits (328), Expect = 4e-35
Identities = 94/381 (24%), Positives = 135/381 (35%), Gaps = 95/381 (24%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG 66
G+ N GNTCY NSVLQ L L+ L + + +
Sbjct: 1 GLENFGNTCYCNSVLQALYFE----------------------NLLTCLKDLFESISEQK 38
Query: 67 NL--VLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNT 124
V++ K + L+ + FD QDA EFL +LL + E D + +N
Sbjct: 39 KRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEIL----DAERKAEKANR 94
Query: 125 SSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVP 184
+ W +IF G L + RC C+ S+ E F +LS+ V
Sbjct: 95 KLNNNNNAEPQPTW----------VHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVE 144
Query: 185 PGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNT 244
N TS CL +F ETL
Sbjct: 145 Q-----------------NTSITS----------------------CLRQFSATETLCGR 165
Query: 245 ----CQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQ----KVTSPIKFPREGLDME 296
C C + K +I++LP +L L KRF + K+ + FP E L +
Sbjct: 166 NKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE-LRL- 223
Query: 297 YYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ 356
+ + Y+L AV HIG +GHY + + G W L+DD V +D
Sbjct: 224 --FNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDEN 279
Query: 357 TVESAEAEHG----AYILVYQ 373
VE + AY+L YQ
Sbjct: 280 AVEEFFGDSPNQATAYVLFYQ 300
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 127 bits (321), Expect = 3e-33
Identities = 100/392 (25%), Positives = 143/392 (36%), Gaps = 73/392 (18%)
Query: 6 NGIANAGNTCYINSVLQCLS-----NTPAFRNVLL---NEDIPIHPDSKSQGQLVDALVN 57
NG+ N GNTCY+N LQCL NT L N D P + + AL
Sbjct: 72 NGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYE 131
Query: 58 FMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEE----AKVVP 113
G ++ + + L K F G+ QQD+QEFL++ L L+E+ P
Sbjct: 132 ---TPGCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSP 188
Query: 114 DQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVY 173
+ + S + H W + S+ + F GQ +S ++C C TST
Sbjct: 189 ILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTI 248
Query: 174 EIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLN 233
+F L +P + L EC++
Sbjct: 249 AMFSTLLVPPY---------------------EVVQL----------------GLQECID 271
Query: 234 KFFNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRF--SSNFTQKVTSPI- 286
+F+ E L C C ++ K EI LP VLI+ RF S +K+ +P
Sbjct: 272 RFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQG 331
Query: 287 ---KFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALY-GHYTAYCRREGTGRW 342
E + + G Y L V H G L GHY + +R GT W
Sbjct: 332 WKNTASVEVNVTLLFNNGIG---YIPRKYSLLGVVCHNGT--LNGGHYFSEVKRSGT--W 384
Query: 343 YLYDDTVVSPVDAQTVESAEAEHGAYILVYQR 374
+YDD+ V T S +YIL Y R
Sbjct: 385 NVYDDSQVRKGSRTTSGS---HPSSYILFYTR 413
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 122 bits (307), Expect = 5e-32
Identities = 95/380 (25%), Positives = 142/380 (37%), Gaps = 90/380 (23%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG 66
G+ N GNTCY+NS LQCL + P R+ L N + ++S L +AL + M
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ 60
Query: 67 NLVLNTKAILLALR----SYTKKFDGNQ--QQDAQEFLLYLLAALNEEAKVVPDQYNGST 120
V L LR + +K + QQDA+E LL+ L+++
Sbjct: 61 EPV-PPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG--------- 110
Query: 121 YSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELS 180
++ S +F +L + ++C+ E
Sbjct: 111 ---------------------AGSKGSFIDQLFGIELETKMKCT-------------ESP 136
Query: 181 LPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240
+ Y+ Q + T+ V + L L E + K T
Sbjct: 137 DEEEVSTESEYKLQC-------HISITTEVNYLQDGLKK-------GLEEEIEKH--SPT 180
Query: 241 LHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRF----SSNFTQKVTSPIKFPREGLDME 296
L Y K I RLP L + F RF K+ +KFP E LD+
Sbjct: 181 LGRDAIYTKT-------SRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFE-LDLY 232
Query: 297 YYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ 356
+ SG Y+L AV H G++A GHY A+ RR+ G+W +DD VS V +
Sbjct: 233 ELCTPSG-------YYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEE 285
Query: 357 TVES----AEAEHGAYILVY 372
+ + H AYIL+Y
Sbjct: 286 DILKLSGGGDW-HIAYILLY 304
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 120 bits (304), Expect = 2e-31
Identities = 99/399 (24%), Positives = 144/399 (36%), Gaps = 109/399 (27%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSK--------SQGQLVDALVNF 58
G+ N G TCY+NS LQ FR + + + K ++D L
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 59 MKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
+ V++ + AL D QQQDAQEF L+ L EAK+
Sbjct: 61 FAQLQFGNRSVVDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLL--EAKL------- 106
Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
S N K + D+F G+ +CS C R S++ F+E
Sbjct: 107 SKSKNPDLKNI-------------------VQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147
Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238
L L + G TL EC+++F
Sbjct: 148 LELQL---------------------------------------KGHKTLEECIDEFLKE 168
Query: 239 ETLHNTCQY----CKKQSDLVKLYEIQRLPPVLILWFKRFS----SNFTQKVTSPIKFPR 290
E L QY C ++D + + LPP L RF + +K+ + I FP
Sbjct: 169 EQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPE 228
Query: 291 EGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVV 350
LDM Y++ S E Y Y+L V H G +A GHY A+ + E TG WY ++D V
Sbjct: 229 I-LDMGEYLAESD---EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDV 284
Query: 351 SPVD------AQTVESAEAEHG-----------AYILVY 372
+ + + A+ AY+LVY
Sbjct: 285 EEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVY 323
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 121 bits (305), Expect = 1e-30
Identities = 92/381 (24%), Positives = 146/381 (38%), Gaps = 67/381 (17%)
Query: 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMM 62
PG G+ N N Y N ++Q LS+ RN L + + + + +LV L ++ +
Sbjct: 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDR-KSELVKRLSELIRKI 175
Query: 63 WSSGNLVLNTKAIL--------LALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPD 114
W+ N K + ++ S KKF +Q D EFL +LL L++
Sbjct: 176 WNPRNF----KGHVSPHELLQAVSKVS-KKKFSITEQSDPVEFLSWLLNTLHK------- 223
Query: 115 QYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYE 174
GS N+S F+ + T+ G + S K+TS
Sbjct: 224 DLGGSKKPNSSIIHD-CFQG----KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVS-- 276
Query: 175 IFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNK 234
F L+L +PP L++ + +P P L + L K
Sbjct: 277 PFLLLTLDLPPP--PLFKDGNEEN-------------------IIPQVP----LKQLLKK 311
Query: 235 FFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSP--IKFPREG 292
+ +G+T D +K Y I RLP LI KRFS N K +P + FP +
Sbjct: 312 Y-DGKTETEL-------KDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKN 363
Query: 293 LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSP 352
LD+ Y+ + Y+L A H G G + R + T +W+ D V
Sbjct: 364 LDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKE 423
Query: 353 VDAQTVESAEAEHGAYILVYQ 373
V Q + +E +YI +++
Sbjct: 424 VLPQLIFLSE----SYIQIWE 440
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 105 bits (264), Expect = 6e-26
Identities = 98/388 (25%), Positives = 149/388 (38%), Gaps = 98/388 (25%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAF--RNVLLNEDIPIHP-----DSKSQ-GQLVDALVN- 57
G+ N GN+CY+NSVLQ L + P+F R L P D Q +L D L++
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60
Query: 58 -FMKMMWSSGNLVLNTKAIL------LALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAK 110
+ K I L + + +F +QQDA EFLL+L+ L+ E+
Sbjct: 61 RYSKPASLKSENDPYQVGIKPSMFKALIGKGH-PEFSTMRQQDALEFLLHLIDKLDRESF 119
Query: 111 VVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTS 170
+D+F + + C +CK+
Sbjct: 120 --------------------------------KNLGLNPNDLFKFMIEDRLECLSCKKVK 147
Query: 171 TVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYE 230
E+ LSLPVP K +T E + PVP L +
Sbjct: 148 YTSELSEILSLPVP--------------------KDEATEKEEGELVYEPVP-----LED 182
Query: 231 CLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRF--SSNFTQ-KVTSPIK 287
CL +F ET+ + C CK+++ K + P L++ KRF N+ K+ PI
Sbjct: 183 CLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPID 242
Query: 288 FPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRRE--GTGRWYLY 345
P E G+ Y+L A +H G + GHY A+ ++E G G+W L+
Sbjct: 243 VPEELG--------PGK-------YELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLF 287
Query: 346 DDTVVSPVDAQTVESAEAEHGAYILVYQ 373
+D V + + E + YI YQ
Sbjct: 288 NDEKV----VASQDPPEMKKLGYIYFYQ 311
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 99 bits (249), Expect = 9e-24
Identities = 88/365 (24%), Positives = 132/365 (36%), Gaps = 95/365 (26%)
Query: 1 MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMK 60
G+ N GNTCY+NSVLQ L P F++ L + I S Q Q F+
Sbjct: 20 NLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS--SVEQLQSS-----FLL 72
Query: 61 MMWSSGNLVLNTKA--ILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
+ + N +L ALR ++G Q DAQE L +L + E
Sbjct: 73 NPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE----------- 121
Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
+ F GQL RC C+ + E F +
Sbjct: 122 -----------------------------LVEKDFQGQLVLRTRCLECETFTERREDFQD 152
Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLY--ECL---N 233
+S+PV + E S S +T + W +S E + +
Sbjct: 153 ISVPVQESELSKSE----ESSEISPDPKTEMK-TLKWAIS--------QFASVERIVGED 199
Query: 234 KFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQ--------KVTSP 285
K+F C+ C ++ + +LP V+ + K F++N ++ KV +P
Sbjct: 200 KYF--------CENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTP 251
Query: 286 IKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLY 345
+ P L + ++ Y L AV H G T GHYTAY RW L+
Sbjct: 252 LLTP---LKLSLEEWSTK---PKNDVYRLFAVVMHSGATISSGHYTAYV------RWLLF 299
Query: 346 DDTVV 350
DD+ V
Sbjct: 300 DDSEV 304
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 98.3 bits (245), Expect = 4e-23
Identities = 90/416 (21%), Positives = 140/416 (33%), Gaps = 138/416 (33%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG 66
G+ N GNTCY+NSVLQ L FR +L+ ++P DS+S + + L +M +
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLL--QAHLMHTQR 58
Query: 67 NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSS 126
L A R F QQD E+L YLL L+
Sbjct: 59 RAEAPPDYFLEASRP--PWFTPGSQQDCSEYLRYLLDRLH-------------------- 96
Query: 127 KQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPG 186
++ +F G+L +++RC NC TS E F +L L P
Sbjct: 97 --------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134
Query: 187 GGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQ 246
++ + LN F + E L Q
Sbjct: 135 ----------------------------------------SVQDLLNYFLSPEKLTGDNQ 154
Query: 247 Y----CKKQSDLVKLYEIQRLPPVLILWFKRFS----SNFTQKVTSPIKFPREGLDMEYY 298
Y C D K ++ P LIL RFS ++ +K+ + +
Sbjct: 155 YYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN---EVLSLP 211
Query: 299 ISASGRRVESRYT------------------YDLCAVSNHIGKTALYGHYTAYCR----- 335
+ + ES Y L AV H G ++ GHY Y R
Sbjct: 212 VRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDA 271
Query: 336 ---------------REGTGRWYLYDDTVVSPVDAQTVESAEA---EHGAYILVYQ 373
+ + WYL++D+ V+ ++V++ + + YIL Y+
Sbjct: 272 DSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 98.8 bits (246), Expect = 2e-22
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 227 TLYECLNKFFNGETLHNT----CQYCKKQSDLVKLYEIQRLPPVLILWFKRFSS--NFTQ 280
TL +CLN+F E L + C CK+ K E+ RLP +LI+ KRFSS +F
Sbjct: 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
Query: 281 KVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTG 340
K+ +++P + LD+ + R YDL AV NH G + GHYTAY R
Sbjct: 736 KIDDLVEYPIDDLDLSGVEYM---VDDPRLIYDLYAVDNHYGGLS-GGHYTAYARNFANN 791
Query: 341 RWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR 375
WYL+DD+ ++ VD E + AY+L Y+R+
Sbjct: 792 GWYLFDDSRITEVDP---EDSVTSS-AYVLFYRRK 822
Score = 96.5 bits (240), Expect = 1e-21
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLL--------NEDIP--IHPDSKSQGQLVD 53
G G+ N GNTCY+NS LQCL +T R+ L NE+ P +H G +
Sbjct: 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMH------GSVAS 317
Query: 54 ALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEE-AKVV 112
A + +K ++ + S+ ++F G QQD+QEF+ +LL L+E+ +++
Sbjct: 318 AYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRII 377
Query: 113 PDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTV 172
Y + V +A W + S+ +D+F G +S++ C C S
Sbjct: 378 KKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSIT 437
Query: 173 YEIFWELSLPVP 184
++ F +L+LP+P
Sbjct: 438 FDPFMDLTLPLP 449
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 87.2 bits (216), Expect = 1e-18
Identities = 93/360 (25%), Positives = 130/360 (36%), Gaps = 94/360 (26%)
Query: 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI-HPDSKSQGQLVDALVNFMKMM 62
G G+ N G TCY+NS+LQ L FR + IP HP + L AL +
Sbjct: 192 GYVGLRNQGATCYMNSLLQSLFFIAKFRKDVY--GIPTDHPRGRDSVAL--ALQRLFYNL 247
Query: 63 WSSGNLVLNTKAILLALRSYT-KKFDGNQQQDAQEFLLYLLAALNEEAK--VVPDQYNGS 119
+ V T+ RS+ D Q D QEF L L + + VV + N
Sbjct: 248 QTGEEPVDTTELT----RSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALN-- 301
Query: 120 TYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWEL 179
IFVG+++S ++C N S E FW++
Sbjct: 302 -------------------------------GIFVGKMKSYIKCVNVNYESARVEDFWDI 330
Query: 180 SLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGE 239
L N K G L E ++ E
Sbjct: 331 QL---------------------NVK------------------GMKNLQESFRRYIQVE 351
Query: 240 TLH-NTCQYCKKQS--DLVKLYEIQRLPPVLILWFKRFSSNFTQ----KVTSPIKFPREG 292
TL + +K D K + LPPVL L KRF +F + K+ +FP E
Sbjct: 352 TLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLE- 410
Query: 293 LDMEYYISASGRRVESR-YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVS 351
+D+ ++ + E+ Y L V H G GHY A + E GRWY +DDT V+
Sbjct: 411 IDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLH-EGHYYALLKPEKDGRWYKFDDTRVT 469
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 80.5 bits (199), Expect = 4e-17
Identities = 71/356 (19%), Positives = 123/356 (34%), Gaps = 73/356 (20%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRN-VLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSS 65
G+ N G CY+N++LQ + P N +L + + + L + M+ S
Sbjct: 2 GLENNGPNCYLNALLQLMFFIPPLFNAILRHSADCPKENCLLC--ELGFLFD---MLDKS 56
Query: 66 GNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALN-EEAKVVPDQYNGSTYSNT 124
+L + QQD QE ++L L+ + PD ++
Sbjct: 57 TGQNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPDIFHNRCTGE- 115
Query: 125 SSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVP 184
+F SS+RC +C S E L LP P
Sbjct: 116 --------------------SGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYP 155
Query: 185 PGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN- 243
P P G T L + N E ++
Sbjct: 156 P----------------------------------IDKPQGRTFSNILERSLNREKINRI 181
Query: 244 TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFS---SNFTQKVTSPIKFPREGLDMEYYIS 300
TC C+K S ++ LPP+L + KR++ + ++ + + P E + + ++I
Sbjct: 182 TCNSCRKYSLANSRKHVKSLPPILGICLKRYNVTPNGNWSRLNTFVDIPLE-IRLPHFIQ 240
Query: 301 AS----GRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTG--RWYLYDDTVV 350
+ + Y+L V HIG + GH ++ R + +WYL++D +V
Sbjct: 241 DDEMVNEGPLSGNFKYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFNDFLV 296
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 72.0 bits (177), Expect = 2e-14
Identities = 79/392 (20%), Positives = 108/392 (27%), Gaps = 177/392 (45%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSG 66
G+ N GNTC++NSVLQ L++ P+
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSL------------------------------------ 24
Query: 67 NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSS 126
Y ++F +QQDA E LL L
Sbjct: 25 -------------IEYLEEF--LEQQDAHELFQVLLETL-------------------EQ 50
Query: 127 KQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTV-YEIFWELSLPVPP 185
F G L S + C C +S V YE F LSLPVP
Sbjct: 51 LLKFPFD---------------------GLLASRIVCLQCGESSKVRYESFTMLSLPVPN 89
Query: 186 GGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHN-T 244
TL CL+ F + E + +
Sbjct: 90 QSSGSGT----------------------------------TLEHCLDDFLSTEIIDDYK 115
Query: 245 CQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFT---QKVTSPIKFPREGLDMEYYISA 301
C C Q+ +V RLP +L + R + K + + FP
Sbjct: 116 CDRC--QTVIV------RLPQILCIHLSRSVFDGRGTSTKNSCKVSFPER---------- 157
Query: 302 SGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCR--------------------REGTGR 341
+ Y L AV H G + GHY Y R +
Sbjct: 158 -----LPKVLYRLRAVVVHYG-SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHP 211
Query: 342 WYLYDDTVVSPVDAQTVESAEAEHGAYILVYQ 373
W+ DT V V V + AY+L Y+
Sbjct: 212 WWRISDTTVKEVSESEVLEQK---SAYMLFYE 240
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 68.6 bits (167), Expect = 1e-12
Identities = 58/311 (18%), Positives = 102/311 (32%), Gaps = 83/311 (26%)
Query: 2 SPG-LNGIANAGNTCYINSVLQCLSNTPAFRNVLLNED-----IPIHPDSKSQGQLVDAL 55
P G+ N GN+CY++SV+Q L + +P QL+ L
Sbjct: 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLL 358
Query: 56 VNFMKMMWSSGNLVLNTKAILLALRSYTK---KFDGNQQQDAQEFLLYLLAALNEEAKVV 112
KM + N +N + L + +F QQDA EFLL+LL +
Sbjct: 359 ---SKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIR------ 409
Query: 113 PDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTV 172
+ ++ + +F ++ + CS C S
Sbjct: 410 --------------------------KGERSYLIPPITSLFEFEVERRLSCSGCMDVSYS 443
Query: 173 YEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECL 232
YE + L +R + +
Sbjct: 444 YE-------SMLMICIFLEGNDEPQDIR-----------------------------KSV 467
Query: 233 NKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSN--FTQKVTSPIKFPR 290
FF +T+ +C+ CK + + I+ LP LIL R+S +K++ PI+
Sbjct: 468 EAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRS 527
Query: 291 EG-LDMEYYIS 300
+ + + ++S
Sbjct: 528 DDMIKLGSFMS 538
Score = 41.6 bits (97), Expect = 5e-04
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 288 FPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGR--WYLY 345
FP + E + Y L AV H G + GHY + R+ G + W L
Sbjct: 664 FPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLK 723
Query: 346 DDTVVSPVDAQTVESAEAEHGAYILVYQR 374
+D V +VE + YI +++R
Sbjct: 724 NDEKT--VLNSSVE--VLKDNGYIYLFKR 748
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 57.2 bits (138), Expect = 2e-09
Identities = 78/368 (21%), Positives = 109/368 (29%), Gaps = 132/368 (35%)
Query: 10 NAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLV 69
N GN+CY NS +Q LS S G++
Sbjct: 4 NTGNSCYFNSTMQALS---------------------SIGKIN----------------- 25
Query: 70 LNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQV 129
+FD + QQDA EFLL LL A+++ +V SN K++
Sbjct: 26 --------------TEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTN---VPPSNIEIKRL 68
Query: 130 GSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGT 189
A Y T E SS C C V ++ L + +
Sbjct: 69 NPLEAFKY-----TIE-------------SSYVCIGCSFEENVSDVGNFLDVSMIDNKL- 109
Query: 190 LYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCK 249
+ SN K S + + C CK
Sbjct: 110 ---DIDELLI--SNFKTWSPIEKD-------------------------------CSSCK 133
Query: 250 KQSDLVKLYEIQRLPPVLILWFKRFSSNFTQ----KVTSPIKFPREGLDMEYYISASGRR 305
+S + I P L + KR+ K I G D
Sbjct: 134 CESAISS-ERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCGTDA---------- 182
Query: 306 VESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLY-DDTVVSPVDAQTVESAEAE 364
Y L AV H+G++ GHY AY + G +LY D + PV V S A
Sbjct: 183 -----KYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDV-STNAR 236
Query: 365 HGAYILVY 372
Y++ Y
Sbjct: 237 SSGYLIFY 244
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 54.0 bits (130), Expect = 4e-08
Identities = 88/400 (22%), Positives = 136/400 (34%), Gaps = 94/400 (23%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNED------IPIHPDSKSQG----------- 49
G+ N GNTCY+NS+LQ R+++LN D +P + G
Sbjct: 3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQR 62
Query: 50 --QLVDALVN-FMKMMWSSGNLVLNTKAI-LLALRSYTKKFDGNQQQDAQEFLLYLLAAL 105
Q V L + F ++ S+ V +K + LALR QQD E + +L L
Sbjct: 63 SNQFVYELRSLFNDLIHSNTRSVTPSKELAYLALR----------QQDVTECIDNVLFQL 112
Query: 106 NEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSN 165
+ + + + G + Q + L + Q + + SVR
Sbjct: 113 EVALEPISNAFAGPDTEDDKE-QSDLIKRLFSGKTKQQLVPESMGN------QPSVR--- 162
Query: 166 CKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGG 225
T E F LSL V G K+ + V
Sbjct: 163 -----TKTERF--LSLLVDVG------------------KKGREI---------VVLLEP 188
Query: 226 GTLYECLNKFFNGETLHNTCQYCKKQSDLV------KLYEIQRLPPVLILWFKRFSSNFT 279
LY+ L+++F+ ++L Q + Q+ L + + P I
Sbjct: 189 KDLYDALDRYFDYDSLTKLPQRSQVQAQLAQPLQRELISMDRYELPSSIDDIDELIREAI 248
Query: 280 QKVTSPIKFPREG---LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRR 336
Q +S ++ + L E + Y Y L AV H G+ + GHY Y +
Sbjct: 249 QSESSLVRQAQNELAELKHEIEKQFDDLK---SYGYRLHAVFIHRGEAS-SGHYWVYIKD 304
Query: 337 EGTGRWYLYDDTVVSPVDAQTV----ESAEAEHGAYILVY 372
W Y+D V+ V A V A Y LVY
Sbjct: 305 FEENVWRKYNDETVTVVPASEVFLFTLGNTAT--PYFLVY 342
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 45.2 bits (107), Expect = 2e-05
Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 32/200 (16%)
Query: 193 CQLRSSVRCSNCKRTST--VYEIFWELSLPVPPGGGTLYECLNKFFNGE--TLHNTCQYC 248
+ R S +Y + L T + L + + E T C
Sbjct: 82 QDQLGTPFSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCC 141
Query: 249 KKQSDLVKLYEIQRLPP----VLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISA--- 301
K Q I+ LP VL++ + F + + + + + A
Sbjct: 142 KYQPLEQTTS-IRHLPDILLLVLVINLSVTNGEFD--DINVVLPSGKVMQNKVSPKAIDH 198
Query: 302 ----SGRRVESRYTYDLCAVSNHIGKTALYGHYTA----YCRREGTGRWYLYDDTVVSPV 353
R ES Y Y+L I ++ H GRWYL++D +V+PV
Sbjct: 199 DKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPV 258
Query: 354 DAQTVESAEAEHGAYILVYQ 373
AYIL+YQ
Sbjct: 259 SEL----------AYILLYQ 268
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 43.7 bits (103), Expect = 5e-05
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 212 EIFWELSLPVPPGGGTLYECLN-KFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILW 270
E F + L V G G L+ECL F GE + +S + + LPPVL
Sbjct: 80 ETFGQYPLQVN-GYGNLHECLEAAMFEGE-VELLPSDHSVKSGQERWFT--ELPPVLTFE 135
Query: 271 FKRFS--SNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYG 328
RF +K+ ++FP+ + Y+L AV H G+ A G
Sbjct: 136 LSRFEFNQGRPEKIHDKLEFPQI---------------IQQVPYELHAVLVHEGQ-ANAG 179
Query: 329 HYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHG----AYILVY 372
HY AY ++ W Y+D V+ + VE G AY L+Y
Sbjct: 180 HYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMY 227
Score = 29.4 bits (66), Expect = 2.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 7 GIANAGNTCYINSVLQCLSNT 27
G+ N GNTC+ ++V+Q L +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQ 21
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 40.2 bits (94), Expect = 8e-04
Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 56/175 (32%)
Query: 208 STVYEIFWELSLPVPPGGG--TLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPP 265
V E ++ +P GG TL +CL ++FN S K P
Sbjct: 60 KLVNERLLQIPVPDDDDGGGITLEQCLEQYFN-------------NSVFAKA------PS 100
Query: 266 VLILWFKRFSSN--FTQKVTSPIKFPREGLDMEYYISASGRRV-----ESRYTYD----- 313
LI+ KR+ QK+ I + +D+ +++ R E R YD
Sbjct: 101 CLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFS 159
Query: 314 ---------LCAVSNHIGKTALYGHYTAYCRREGTGR------------WYLYDD 347
LC+ H G + GHY A+ R G+ W +DD
Sbjct: 160 PTCGKFKLSLCSAVCHRGTSLETGHYVAFV-RYGSYSLTETDNEAYNAQWVFFDD 213
>gnl|CDD|205892 pfam13717, zinc_ribbon_4, zinc-ribbon domain. This family consists
of a single zinc ribbon domain, ie half of a pair as in
family DZR, pfam12773.
Length = 36
Score = 27.9 bits (63), Expect = 0.82
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 161 VRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRT 207
+ C NCK YEI E +PP G VRCS C
Sbjct: 3 ITCPNCK---AKYEIDDEK---IPPKGR---------KVRCSKCGHV 34
>gnl|CDD|176652 cd06140, DNA_polA_I_Bacillus_like_exo, inactive DEDDy 3'-5'
exonuclease domain of Bacillus stearothermophilus DNA
polymerase I and similar family-A DNA polymerases.
Bacillus stearothermophilus-like Polymerase I (Pol I),
a subgroup of the family-A DNA polymerases, contains an
inactive DnaQ-like 3'-5' exonuclease domain in the same
polypeptide chain as the polymerase region. The
exonuclease-like domain of these proteins possess the
same fold as the Klenow fragment (KF) of Escherichia
coli Pol I, but does not contain the four critical
metal-binding residues necessary for activity. The
function of this domain is unknown. It might act as a
spacer between the polymerase and the 5'-3' exonuclease
domains. Some members of this subgroup, such as those
from Bacillus sphaericus and Thermus aquaticus, are
thermostable DNA polymerases.
Length = 178
Score = 30.3 bits (69), Expect = 1.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI--HPDSK 46
+AN G YI L L + A + L +E IP H D+K
Sbjct: 26 ALANGGGAYYIPLEL-ALLDLAALKEWLEDEKIPKVGH-DAK 65
>gnl|CDD|205894 pfam13719, zinc_ribbon_5, zinc-ribbon domain. This family consists
of a single zinc ribbon domain, ie half of a pair as in
family DZR, pfam12773.
Length = 37
Score = 27.5 bits (62), Expect = 1.1
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 161 VRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRT 207
+ C NC+ YEI E +PP G VRCS C
Sbjct: 3 ITCPNCQ---AKYEIDDEK---IPPKGR---------KVRCSKCGHV 34
>gnl|CDD|204610 pfam11207, DUF2989, Protein of unknown function (DUF2989). Some
members in this bacterial family of proteins are
annotated as lipoproteins however this cannot be
confirmed.
Length = 203
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 53 DALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVV 112
AL F+ + G L T + AL +Y K D + L + L N K
Sbjct: 124 AALRQFLAL---EGQPELETAELQYALATYYIKRD---PDKTIQLLYHALELSNPGDKFN 177
Query: 113 PD 114
P+
Sbjct: 178 PE 179
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 258
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 91 QQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYW--EKF 141
+ A+E +Y++ E+ V YN + + + +G +R +H W EK
Sbjct: 71 SELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWGLEKQ 123
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease. 3\' -5' exonuclease
proofreading domain present in DNA polymerase I, Werner
syndrome helicase, RNase D and other enzymes.
Length = 172
Score = 29.2 bits (66), Expect = 2.3
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 8 IANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPI 41
I+ G +I L + +++L +E I
Sbjct: 45 ISVTGEGAFIIDPLALGDDLEILKDLLEDETITK 78
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 29.0 bits (65), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 26 NTPAFRNVLLNEDIPIHP---DSKSQGQLVDALVNFMK 60
N + NV++NE+I H D + L+DA +NF K
Sbjct: 1359 NAKKYHNVIINENIQTHQCDGDEDAVFLLLDAFLNFSK 1396
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
Length = 258
Score = 28.2 bits (63), Expect = 6.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 349 VVSPVDAQTVESAEAEHGAYI 369
VV PVD + V A EHGA I
Sbjct: 27 VVDPVDPEKVLQAAHEHGAKI 47
>gnl|CDD|238775 cd01517, PAP_phosphatase, PAP-phosphatase_like domains.
PAP-phosphatase is a member of the inositol
monophosphatase family, and catalyses the hydrolysis of
3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In
Saccharomyces cerevisiae, HAL2 (MET22) is involved in
methionine biosynthesis and provides increased salt
tolerance when over-expressed. Bacterial members of this
domain family may differ in their substrate specificity
and dephosphorylate different targets, as the substrate
binding site does not appear to be conserved in that
sub-set.
Length = 274
Score = 28.0 bits (63), Expect = 7.6
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 324 TALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGA 367
+A+ G +G+ L + + A ES E+ H +
Sbjct: 126 SAVRGQGAWLRPLDGSSLQPLSVRQLTNAARASFCESVESAHSS 169
>gnl|CDD|119329 cd06572, Histidinol_dh, Histidinol dehydrogenase, HisD, E.C
1.1.1.23. Histidinol dehydrogenase catalyzes the last
two steps in the L-histidine biosynthesis pathway,
which is conserved in bacteria, archaea, fungi, and
plants. These last two steps are (i) the NAD-dependent
oxidation of L-histidinol to L-histidinaldehyde, and
(ii) the NAD-dependent oxidation of L-histidinaldehyde
to L-histidine. In most fungi and in the unicellular
choanoflagellate Monosiga bevicollis, the HisD domain
is fused with units that catalyze the second and third
biosynthesis steps in this same pathway.
Length = 390
Score = 28.2 bits (64), Expect = 8.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 78 ALRSYTKKFDG 88
AL YT+KFDG
Sbjct: 19 ALLEYTEKFDG 29
>gnl|CDD|234853 PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol
dehydrogenase; Reviewed.
Length = 425
Score = 28.1 bits (64), Expect = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 78 ALRSYTKKFDG 88
AL YT+KFDG
Sbjct: 47 ALLEYTEKFDG 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,544,258
Number of extensions: 1704690
Number of successful extensions: 1415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 77
Length of query: 375
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 277
Effective length of database: 6,590,910
Effective search space: 1825682070
Effective search space used: 1825682070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)